Citrus Sinensis ID: 011369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHcccccEEEccHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEEcHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHcccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrppplaeAEMAtrslsedspptpswftpkrLLVIFCVINMLnyvdrgaiasngvngsqrtcddkgictsgsgiqgdfklnnfqdgvlSSAFMVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlqvcl
Flexible Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrpPPLAEAEMATRslsedspptpswftpKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIfgdvpssplvgvlqvCL
Low Complexity Region (SEG)
MLSTSSNRSddvvdvdQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Disordered region (IsUnstruct)
***********************************************************WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC*
Disordered Region (DISOPRED)
*************************************************************TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF*******AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Disordered Region (DISEMBL)
*************DVDQNSQPNLP*********************************PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Disordered Region (DISPRO)
**********************************************************SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ*****************************************************NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
F4IKF6	510	Probable sphingolipid tra	yes	no	0.924	0.882	0.647	1e-173
Q9FLG8	484	Probable sphingolipid tra	no	no	0.827	0.832	0.704	1e-169
Q6NMN6	492	Probable sphingolipid tra	no	no	0.858	0.849	0.599	1e-153
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.733	0.590	0.271	6e-28
A8WGF7	526	Protein spinster homolog	yes	no	0.739	0.684	0.267	6e-28
Q5XGK0	526	Protein spinster homolog	N/A	no	0.741	0.686	0.275	9e-28
B0JZE1	513	Protein spinster homolog	no	no	0.835	0.793	0.250	6e-24
A2SWM2	504	Protein spinster homolog	yes	no	0.714	0.690	0.256	9e-24
Q8IVW8	549	Protein spinster homolog	yes	no	0.718	0.637	0.248	1e-23
Q6ZMD2	512	Protein spinster homolog	no	no	0.770	0.732	0.270	4e-23

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  607 bits (1564), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 307/474 (64%), Positives = 364/474 (76%), Gaps = 24/474 (5%)

Query: 12  VVDVDQNSQPNLPIQQSKSQSLS-HRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIF 70
           +V  +++  P  P+ ++ S+  S     PLAE E   RSL  +   + S  +P  LLVIF
Sbjct: 1   MVTKEEDCLP--PVTETTSRCYSTSSSTPLAELE-TVRSL--EIVESSSSLSPVWLLVIF 55

Query: 71  CVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGL 130
           C+IN+LNY+DRGAIASNGVNGS R+C+DKG CT  +GIQG F L+NF+DGVLSS+FMVGL
Sbjct: 56  CIINLLNYMDRGAIASNGVNGSTRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGL 115

Query: 131 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL 190
           L+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISL
Sbjct: 116 LIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISL 170

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250
           AAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM PFA
Sbjct: 171 AAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFA 230

Query: 251 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES 310
           VL F++KPLQLKG            +   + +    +++ +  D  + + E S  S   +
Sbjct: 231 VLGFLMKPLQLKG------------SETLKNNNRLQVDNEIEHDQFEVSIETSKSSYANA 278

Query: 311 RFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF 370
            F    + F++D KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F
Sbjct: 279 VF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIF 337

Query: 371 GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF 430
           G VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF
Sbjct: 338 GAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALF 397

Query: 431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ 484
            +GELLVFATQAPVNYVCLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++Q
Sbjct: 398 ALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQ 451

Probable sphingolipid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  594 bits (1532), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/433 (70%), Positives = 344/433 (79%), Gaps = 30/433 (6%)

Query: 52  EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
           +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct: 24  KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query: 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
           F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct: 84  FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query: 172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS 231
           SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS
Sbjct: 144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query: 232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV 291
            L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK +            NLN   
Sbjct: 204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN--- 250

Query: 292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY 351
                       +  +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSY
Sbjct: 251 ------------VLPVGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSY 293

Query: 352 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 411
           WGPKAGYNIY M NADM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GA
Sbjct: 294 WGPKAGYNIYKMENADMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGA 353

Query: 412 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF 471
           I C  AFC  S+Y FLALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSIHIF
Sbjct: 354 IFCFAAFCFKSMYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIF 413

Query: 472 GDVPSSPLVGVLQ 484
           GDVPSSPLVGVLQ
Sbjct: 414 GDVPSSPLVGVLQ 426

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/437 (59%), Positives = 327/437 (74%), Gaps = 19/437 (4%)

Query: 51  SEDSPPT--PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGI 108
            E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GI
Sbjct: 12  KEEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGI 71

Query: 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168
           QG+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S+
Sbjct: 72  QGEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSY 131

Query: 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228
           +FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG 
Sbjct: 132 NFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGY 191

Query: 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           +G+HL WR+AF+ EAI M  F +L+F IK P QLKGFA  +S K          ++A   
Sbjct: 192 IGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE-- 249

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                   + Q   ++ KS       N +  F +D K L  EKV++VNVLGYI YNFVIG
Sbjct: 250 --------ASQIKTKTPKS------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIG 295

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAG+ IY M NADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T
Sbjct: 296 AYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAAST 355

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
            LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV 
Sbjct: 356 LLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVL 415

Query: 468 IHIFGDVPSSPLVGVLQ 484
           IHI GDVPSSPL G +Q
Sbjct: 416 IHILGDVPSSPLYGKMQ 432

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 192/439 (43%), Gaps = 82/439 (18%)

Query: 60  WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQD 119
           WFT    + + C +N++NY+DR  IA              G+ T    ++ DF + N   
Sbjct: 114 WFT----VTVLCFVNLINYMDRFTIA--------------GVLTD---VRNDFDIGNDSA 152

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRM 178
           G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T        F W IA  R 
Sbjct: 153 GLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAF-RA 211

Query: 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWR 236
           LVG+GEAS+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR
Sbjct: 212 LVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWR 270

Query: 237 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS 296
           +A     IL +    L  +IK                 V   SEGS   NL         
Sbjct: 271 WALRVTPILGIVAVFLILLIK---------------DPVRGHSEGSH--NL--------- 304

Query: 297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356
                             + + + QD K L++ + ++++  G+    FV GA ++WGP  
Sbjct: 305 ------------------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSF 346

Query: 357 GYNIYHMS--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
            Y    M   N +++       FG +T++ G++G   G F+   +      A  ++ A  
Sbjct: 347 IYLGMKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFG 406

Query: 408 FLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464
            L +   LT  CL   S+  G  AL   G+L +    A V  + L+ V P+ R+ + A  
Sbjct: 407 LLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQ 466

Query: 465 TVSIHIFGDVPSSPLVGVL 483
            +  H  GD  S  LVG +
Sbjct: 467 ILISHALGDAGSPYLVGAI 485

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 191/437 (43%), Gaps = 77/437 (17%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+    S I+ D+ +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVL---SDIKEDYHISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ +G+S W+  T  +   S   FW   + R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGE 242
           EAS+ ++A   I D     Q++  LS FY   P G  LGY+ G  V S   +W +A    
Sbjct: 164 EASYSTIAPTIIADLFLADQRSRMLSFFYFATPVGCGLGYIAGSKVTSTAGDWHWAL--- 220

Query: 243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER 302
                                         +V   +   +    +   V+++    A ER
Sbjct: 221 ------------------------------RVTPGLGLVAVLLLI--FVAKEPPRGALER 248

Query: 303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGY 358
                   R L   S FS D K LL+   ++++  G+    FV GA + WGP    ++  
Sbjct: 249 K-----SDRPLTNTSWFS-DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRR 302

Query: 359 NIYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
            IY        + N D  M+FGG+T V G++G ++G  I  +   T   A  L+ A   +
Sbjct: 303 VIYKTEPCQGGICNYDDSMIFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMI 362

Query: 410 GAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV 466
            +   L    AF  +SL    A   +GE L+    A V  + L+ V P+ R+ + A+  V
Sbjct: 363 SSAPFLYLSLAFADTSLVATYAFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIV 422

Query: 467 SIHIFGDVPSSPLVGVL 483
             H+ GD  S  L+GV+
Sbjct: 423 VSHLLGDAGSPYLIGVI 439

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 190/436 (43%), Gaps = 75/436 (17%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+      I+  F +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVLPD---IKKAFNISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ VG+S W+  T  +   S+  FW   I R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243
           EAS+ ++A   I D     Q+T  LS FY   P G  LGY    +VGS +      W  A
Sbjct: 164 EASYSTIAPTIIADLFLADQRTRMLSFFYFATPVGCGLGY----IVGSEMTSAAGDWHWA 219

Query: 244 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303
           + + P   L  V+  +                               V+E+    A ER 
Sbjct: 220 LRVTPGLGLLAVLLLI------------------------------FVAEEPPRGALERK 249

Query: 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYN 359
                  R L   S +S D K LL+   ++++  G+    FV GA + WGP    ++   
Sbjct: 250 -----TDRPLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMV 303

Query: 360 IYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG 410
           IY        + N D  M+FGG+T + GI+G ++G  I  +   T   A  L+ A   + 
Sbjct: 304 IYKSKPCEGGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMIS 363

Query: 411 AISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           +   L    AF  +SL        +GE L+    A V  + L+ V P+ R+ + A+  V 
Sbjct: 364 SAPFLFLSLAFADTSLVATYVFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVV 423

Query: 468 IHIFGDVPSSPLVGVL 483
            H+ GD  S  L+GV+
Sbjct: 424 SHLLGDAGSPYLIGVI 439

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 201/499 (40%), Gaps = 92/499 (18%)

Query: 11  DVVDVDQNSQPNLPIQQSKS-QSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLV- 68
           D V    NSQ  +P  + +  ++L  R  P +    A    S  S P  + +  KR  V 
Sbjct: 6   DGVGTVSNSQGCIPGAEERGLETLPGRMNPTSLDVKAVELESSSSKPDKA-YNWKRASVA 64

Query: 69  ---IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
              I  V N+LNY+DR  +A   ++                 IQ  F++ +   G+L + 
Sbjct: 65  AAGILSVGNVLNYLDRYTVAGVLLD-----------------IQQHFEVKDSGAGLLQTV 107

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGV 182
           F+   +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+
Sbjct: 108 FICSFMVAAPIFGYLGDRFNRKVILSSGIFFWSAITFSSSFIPKKY-FWLLVLSRGLVGI 166

Query: 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWG 241
           GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +WR+A   
Sbjct: 167 GEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGDWRWALRV 226

Query: 242 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 301
             +L +    L  +  P   +G A    G                               
Sbjct: 227 SPVLGVITGTLLLIFVPTAKRGHAEQLKG------------------------------- 255

Query: 302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--- 358
                          S + +D + L++ + YV + L     +F  GA   W P   Y   
Sbjct: 256 ---------------SSWIRDMRGLIKNRSYVFSSLATSTVSFATGALGMWIPLYLYRAQ 300

Query: 359 ---------NIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 408
                    NI   S  D ++FG +T + G +G I G             A  L+ A   
Sbjct: 301 VVQKSVEPCNIPPCSTKDSLIFGAITCLTGFLGVIIGAGATKWCRRKTQRADPLVCAVGM 360

Query: 409 LGA--ISCLTAFCLSS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464
           LG+    CL      S  +  ++ +F  GE L+F+  A    + ++ V P+ RA ++A+ 
Sbjct: 361 LGSAIFICLVFVAAKSSIIAAYICIFA-GETLLFSNWAITADMLMYVVIPTRRATAVALQ 419

Query: 465 TVSIHIFGDVPSSPLVGVL 483
           + + H+ GD  S  L+G +
Sbjct: 420 SFTSHLLGDAGSPYLIGFI 438

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Xenopus tropicalis (taxid: 8364)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score =  112 bits (279), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 177/433 (40%), Gaps = 85/433 (19%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  FK+ +   G+L + F+   +VA
Sbjct: 65  NVLNYMDRYTVAGVLLD-----------------IQKQFKVGDSSAGLLQTVFICSFMVA 107

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     +W + + R LVG+GE+S+ S
Sbjct: 108 APIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSFITKEYYWLLVLSRCLVGIGESSYSS 165

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV---VGSHLNWRYAFWGEAILM 246
           ++   I D     ++T  LS+FY+ IP G  LGY+ G +    G H  W +A     +L 
Sbjct: 166 ISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGH--WYWALRVSPMLG 223

Query: 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 306
           L    L  +                      VSE    S          +DQ   R    
Sbjct: 224 LTAGTLILIF---------------------VSEPKRGS----------ADQPGGR---- 248

Query: 307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK----------- 355
                 L   + +  D K L + + YV + L   A +F  GA+  W P+           
Sbjct: 249 ------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFGIWIPQYLVRAQVVQKS 302

Query: 356 AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 411
           A    Y    S   ++FG +T V G++G + G             A  L+ A + LG+  
Sbjct: 303 AESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCRQKTERADPLVCAVSMLGSAI 362

Query: 412 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 470
            I  +      S+ G      +GE L+F   A    + ++ V P+ RA ++A    + H+
Sbjct: 363 FICLIFVVAKKSIVGAYICIFIGETLLFLNWAITADILMYVVIPTRRATAVAFQGFTSHL 422

Query: 471 FGDVPSSPLVGVL 483
            GD  S  L+G++
Sbjct: 423 LGDAGSPYLIGLI 435

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 174/431 (40%), Gaps = 81/431 (18%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  F + +   G+L S F+   +VA
Sbjct: 112 NVLNYLDRYTVAGVLLD-----------------IQQHFGVKDRGAGLLQSVFICSFMVA 154

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     FW + + R LVG+GEAS+ +
Sbjct: 155 APIFGYLGDRFNRKVILSCGIFFWSAVTFS--SSFIPQQYFWLLVLSRGLVGIGEASYST 212

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLP 248
           +A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L + 
Sbjct: 213 IAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLGMI 272

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L  ++ P   +G A                           + + DQ   R      
Sbjct: 273 TGTLILILVPATKRGHA---------------------------DQLGDQLKAR------ 299

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-- 366
                   + + +D K L++ + YV + L   A +F  GA   W P   +    +     
Sbjct: 300 --------TSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKTAE 351

Query: 367 -----------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA---I 412
                       ++FG +T   G +G ++G             A  L+ A   LG+   I
Sbjct: 352 TCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLKTQRADPLVCAVGMLGSAIFI 411

Query: 413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG 472
             +     SS+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+ G
Sbjct: 412 CLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHLLG 471

Query: 473 DVPSSPLVGVL 483
           D  S  L+G +
Sbjct: 472 DAGSPYLIGFI 482

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|Q6ZMD2|SPNS3_HUMAN Protein spinster homolog 3 OS=Homo sapiens GN=SPNS3 PE=2 SV=2

 Score =  110 bits (274), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 192/459 (41%), Gaps = 84/459 (18%)

Query: 55  PPTP-SW-FTPKRLLV---IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQ 109
           P TP SW   P R  V   + C IN+LNY++   IA   ++                 IQ
Sbjct: 31  PITPTSWSLPPWRAYVAAAVLCYINLLNYMNWFIIAGVLLD-----------------IQ 73

Query: 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF- 168
             F++++   G+L + F+  LL+++P+F  L   H+    +  G+ +W+   AG  SSF 
Sbjct: 74  EVFQISDNHAGLLQTVFVSCLLLSAPVFGYLGDRHSRKATMSFGILLWS--GAGLSSSFI 131

Query: 169 ---DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225
                W   + R +VG G AS+ ++A   + D     Q+T  L++FY+ IP G  LGYV 
Sbjct: 132 SPRYSWLFFLSRGIVGTGSASYSTIAPTVLGDLFVRDQRTRVLAVFYIFIPVGSGLGYVL 191

Query: 226 GGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA 284
           G  V     NWR+A      L     +L  ++ P   +G            A+ ++G  A
Sbjct: 192 GSAVTMLTGNWRWALRVMPCLEAVALILLILLVPDPPRG------------AAETQGEGA 239

Query: 285 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344
                                 +G  R     S + +D + L +   +V + LG  A  F
Sbjct: 240 ----------------------VGGFR-----SSWCEDVRYLGKNWSFVWSTLGVTAMAF 272

Query: 345 VIGAYSYWGPK--AGYNIYH----------MSNAD-MMFGGVTIVCGIVGTISGGFILDQ 391
           V GA  +W PK      + H           SN D ++FG +TI+ G++G I G     +
Sbjct: 273 VTGALGFWAPKFLLEARVVHGLQPPCFQEPCSNPDSLIFGALTIMTGVIGVILGAEAARR 332

Query: 392 MGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVC 448
               I  A  L+ A++ L    CL        ++L        +GELL+    A V  + 
Sbjct: 333 YKKVIPGAEPLICASSLLATAPCLYLALVLAPTTLLASYVFLGLGELLLSCNWAVVADIL 392

Query: 449 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL 487
           L  V P  R  + A+     HI GD  S  L G++   L
Sbjct: 393 LSVVVPRCRGTAEALQITVGHILGDAGSPYLTGLISSVL 431

Sphingolipid transporter.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
255576025	505	transporter, putative [Ricinus communis]	0.889	0.857	0.819	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.903	0.823	0.782	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.885	0.845	0.793	0.0
255554517	541	transporter, putative [Ricinus communis]	0.938	0.844	0.723	0.0
357485271	497	Spinster-like protein [Medicago truncatu	0.868	0.851	0.746	0.0
356531403	496	PREDICTED: protein spinster homolog 1-li	0.866	0.850	0.759	0.0
224105833	468	sugar transporter/spinster transmembrane	0.839	0.873	0.739	0.0
356546730	532	PREDICTED: protein spinster homolog 1-li	0.930	0.851	0.698	0.0
356519493	530	PREDICTED: protein spinster homolog 1-li	0.926	0.850	0.701	0.0
357164805	606	PREDICTED: protein spinster homolog 1-li	0.891	0.716	0.724	0.0

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/437 (81%), Positives = 390/437 (89%), Gaps = 4/437 (0%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           R+ + DS   PSWFTPKRLL++FCVINM+NYVDRGAIASNGVNGS RTCD+KGIC SGSG
Sbjct: 3   RTSTNDSSSDPSWFTPKRLLMLFCVINMINYVDRGAIASNGVNGSIRTCDEKGICNSGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF LNNFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSS
Sbjct: 63  IQGDFNLNNFQDGVLSSAFMVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG
Sbjct: 123 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
            VGS+ NWRYAFWGEA+LMLPFAVL F +KPLQLKGFAPAES KA + +S+   + AS  
Sbjct: 183 FVGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASIT 239

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
            D+ +EDIS +A + S K  GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIG
Sbjct: 240 EDNGNEDISSRAFKAS-KLKGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIG 298

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIYHMSNADMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS AT
Sbjct: 299 AYSYWGPKAGYNIYHMSNADMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGAT 358

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           FLGAI C +AFCL +LYGF+ LF+VGELLVFATQAPVNYVCLH VKP LR LSMAISTVS
Sbjct: 359 FLGAIFCFSAFCLKNLYGFIILFSVGELLVFATQAPVNYVCLHCVKPGLRPLSMAISTVS 418

Query: 468 IHIFGDVPSSPLVGVLQ 484
           IHIFGDVPSSPLVGVLQ
Sbjct: 419 IHIFGDVPSSPLVGVLQ 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/445 (78%), Positives = 384/445 (86%), Gaps = 5/445 (1%)

Query: 43  AEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGIC 102
           +EMA   +  D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+C
Sbjct: 23  SEMAKTPIG-DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVC 81

Query: 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 162
           T GSGIQGDF L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATA
Sbjct: 82  TPGSGIQGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATA 141

Query: 163 GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG 222
           GCGSSFDFWSIAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALG
Sbjct: 142 GCGSSFDFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALG 201

Query: 223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS 282
           YVYGG VG H NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG 
Sbjct: 202 YVYGGFVGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGP 260

Query: 283 EASNLNDHV---SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339
             SN+N  V   +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY
Sbjct: 261 GLSNVNGGVLIRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGY 320

Query: 340 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA 399
           ++YNFVIGAYSYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNA
Sbjct: 321 VSYNFVIGAYSYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNA 380

Query: 400 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL 459
           FKLLS ATFLGAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR L
Sbjct: 381 FKLLSGATFLGAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPL 440

Query: 460 SMAISTVSIHIFGDVPSSPLVGVLQ 484
           SMA+STV+IHIFGDVPSSPLVG+LQ
Sbjct: 441 SMAMSTVAIHIFGDVPSSPLVGILQ 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/435 (79%), Positives = 379/435 (87%), Gaps = 4/435 (0%)

Query: 53  DSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF 112
           D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+CT GSGIQGDF
Sbjct: 8   DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVCTPGSGIQGDF 67

Query: 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS 172
            L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWS
Sbjct: 68  NLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWS 127

Query: 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH 232
           IAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H
Sbjct: 128 IAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEH 187

Query: 233 LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV- 291
            NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V 
Sbjct: 188 FNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVL 246

Query: 292 --SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY 349
             +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAY
Sbjct: 247 IRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAY 306

Query: 350 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
           SYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFL
Sbjct: 307 SYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFL 366

Query: 410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH 469
           GAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IH
Sbjct: 367 GAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIH 426

Query: 470 IFGDVPSSPLVGVLQ 484
           IFGDVPSSPLVG+LQ
Sbjct: 427 IFGDVPSSPLVGILQ 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/466 (72%), Positives = 382/466 (81%), Gaps = 9/466 (1%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           +Q K  S S  P P  +A+MA +  +  S P PSWFTP+RLLVIFC+IN++NYVDRGAIA
Sbjct: 8   KQVKPLSSSEEPNPSRDAQMA-KVPTPSSAPAPSWFTPRRLLVIFCIINLINYVDRGAIA 66

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNG++RTC   G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 67  SNGVNGNRRTCTS-GTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSFN 125

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 126 PFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEASFISLAAPFIDDNAPVAQKT 185

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAILMLPF VL F++KPLQLKGFA
Sbjct: 186 AWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILMLPFVVLGFLMKPLQLKGFA 245

Query: 266 PAESGKA--QVVASVS-----EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ 318
           PAES KA   V  +VS     E S     N  V E+++D++ + S  S   +  LNQ S+
Sbjct: 246 PAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDKSPKPSCMSRYATFSLNQFSR 305

Query: 319 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCG 378
           F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY+M+NADM+FGG+TIVCG
Sbjct: 306 FIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYNMTNADMIFGGITIVCG 365

Query: 379 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF 438
           I+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AFC  S+Y FLALF +GELLVF
Sbjct: 366 ILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAFCFKSMYVFLALFAIGELLVF 425

Query: 439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ 484
           ATQ PVNY+CLH VKPS+R LSMA+S VSIHIFGDVPSSPLVGVLQ
Sbjct: 426 ATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSPLVGVLQ 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/430 (74%), Positives = 365/430 (84%), Gaps = 7/430 (1%)

Query: 55  PPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL 114
           PP PSWFTPKRLL+IFC+IN++NYVDRGAIASNGVNG+  TC + G+CT+G+GIQGDF L
Sbjct: 8   PPNPSWFTPKRLLIIFCIINLINYVDRGAIASNGVNGTLETCTESGVCTAGTGIQGDFNL 67

Query: 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA 174
           +NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIA
Sbjct: 68  SNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIA 127

Query: 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234
           ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  N
Sbjct: 128 ICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFN 187

Query: 235 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED 294
           WR AFWGEAI MLPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +
Sbjct: 188 WRVAFWGEAIFMLPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE 244

Query: 295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP 354
             DQA  R  K    S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGP
Sbjct: 245 --DQAFIRGSKL--TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGP 300

Query: 355 KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           KAGY+IYHMSNAD++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI C
Sbjct: 301 KAGYSIYHMSNADLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFC 360

Query: 415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV 474
           L AF    L+GF+ LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSIHIFGDV
Sbjct: 361 LVAFLFKGLFGFIILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDV 420

Query: 475 PSSPLVGVLQ 484
           PS+PLVGVLQ
Sbjct: 421 PSAPLVGVLQ 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/429 (75%), Positives = 362/429 (84%), Gaps = 7/429 (1%)

Query: 56  PTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLN 115
           P PSWFTPKRLL+IFC+INMLNYVDRGAIASNGVNGS  TC D GICT GSGIQGDF LN
Sbjct: 9   PNPSWFTPKRLLMIFCLINMLNYVDRGAIASNGVNGSLATCTDSGICTGGSGIQGDFNLN 68

Query: 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI 175
           NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSFDFWSIAI
Sbjct: 69  NFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAI 128

Query: 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235
           CRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+VGS  NW
Sbjct: 129 CRMLVGVGEASFISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNW 188

Query: 236 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 295
           R AFW EAILMLPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +D ++E  
Sbjct: 189 RVAFWVEAILMLPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-DDTLAE-- 244

Query: 296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK 355
            DQA  +  KS   S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGAYSYWGPK
Sbjct: 245 -DQALLKGSKS--TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGAYSYWGPK 301

Query: 356 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL 415
           AGY+IYHM+NAD++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATFLGAI CL
Sbjct: 302 AGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATFLGAIFCL 361

Query: 416 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 475
            AF   SL GF+  F++GELL+F TQAPVNYV L  VKPSLR LSMAISTVSIH+FGDVP
Sbjct: 362 IAFLFKSLSGFIVFFSMGELLIFVTQAPVNYVSLRCVKPSLRPLSMAISTVSIHVFGDVP 421

Query: 476 SSPLVGVLQ 484
           SSPLVGVLQ
Sbjct: 422 SSPLVGVLQ 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105833|ref|XP_002313948.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222850356|gb|EEE87903.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/437 (73%), Positives = 359/437 (82%), Gaps = 28/437 (6%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           RS +  SPP PSWFTPKRLLVIFCVIN++NYVDRGAIASNGVNGS+RTC   G CT GSG
Sbjct: 3   RSSTALSPPAPSWFTPKRLLVIFCVINLINYVDRGAIASNGVNGSRRTCSKSGTCTFGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF L+NF+DGVLSSAFMVGLLVA PIFASLAKS NPFRLIGVGLSVWT A  GCG S
Sbjct: 63  IQGDFNLSNFEDGVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCGFS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           F+FW+I ICRMLVGVGEASFISLAAPFIDDNAPV +KT WL +FYMCIPTG ALGYVYGG
Sbjct: 123 FNFWTITICRMLVGVGEASFISLAAPFIDDNAPVAKKTLWLGIFYMCIPTGYALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           ++G H NWR+AF+GEAILMLPFAVL FV+KPLQLKGFAPAES KA               
Sbjct: 183 LIGGHFNWRFAFYGEAILMLPFAVLGFVMKPLQLKGFAPAESKKAL-------------- 228

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                      + E ++  +  ++F    S+F  D KVLL EKVYVVNVLGYIAYNFVIG
Sbjct: 229 ----------TSIETAVLEVQGAQF----SRFMIDVKVLLLEKVYVVNVLGYIAYNFVIG 274

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIY+MSNADM+FGGVTIVCGIVGTI GG++LD + +TISNAFKLLSA T
Sbjct: 275 AYSYWGPKAGYNIYNMSNADMIFGGVTIVCGIVGTIGGGYVLDLINSTISNAFKLLSAVT 334

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           F+GAI C +AFC  ++Y FLA F +GELLVFATQAPVNYVCLH VKPSLR +SMA+STV+
Sbjct: 335 FVGAIFCFSAFCFKNMYAFLAFFAIGELLVFATQAPVNYVCLHCVKPSLRPISMAMSTVA 394

Query: 468 IHIFGDVPSSPLVGVLQ 484
           IHIFGDVPSSPLVGVLQ
Sbjct: 395 IHIFGDVPSSPLVGVLQ 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/465 (69%), Positives = 370/465 (79%), Gaps = 12/465 (2%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           Q   SQ      P L E  ++T        PT SWFTPKRLL IFCVIN+LNYVDRGAIA
Sbjct: 3   QDDHSQVKPKPSPQLVEPRISTMI------PTASWFTPKRLLAIFCVINLLNYVDRGAIA 56

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNGS+ TC + G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 57  SNGVNGSKGTCTEGGTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVN 116

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 117 PFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEASFISLAAPFIDDNAPVTQKT 176

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ M+PFA+    +KPLQL+GF 
Sbjct: 177 AWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLFMVPFAISGLFMKPLQLRGFV 236

Query: 266 PAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQF 319
           PA+S K    + VAS  +  EASN  D    +  ++ D++S    KS   ++   + S+F
Sbjct: 237 PADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKSSNDHSKSKSVTQIFEKFSRF 296

Query: 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGI 379
             D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM++AD++FGG+TIVCGI
Sbjct: 297 LNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMTDADLIFGGITIVCGI 356

Query: 380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA 439
           VGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF   S+YGFLALF++GELLVFA
Sbjct: 357 VGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFLFRSMYGFLALFSIGELLVFA 416

Query: 440 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ 484
           TQ PVNYVCL  VKPSLR LSMA+STV IHIFGDVPSSPLVGVLQ
Sbjct: 417 TQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPLVGVLQ 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/463 (70%), Positives = 374/463 (80%), Gaps = 12/463 (2%)

Query: 28  SKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASN 87
           ++ Q    +P    E +M T S      P+ SWFTPKRLL IFCVIN+LNY+DRGAIASN
Sbjct: 2   AQQQEHEGKPESSLEPDMGTNS---TMIPSTSWFTPKRLLAIFCVINLLNYLDRGAIASN 58

Query: 88  GVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF 147
           GVNGSQRTC+  G C SG+GIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPF
Sbjct: 59  GVNGSQRTCEG-GTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPF 117

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207
           RLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEASFISLAAPFIDDNAPV QKTAW
Sbjct: 118 RLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAPVSQKTAW 177

Query: 208 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267
           L++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM PFA+L FV+KPLQLKGFAP 
Sbjct: 178 LAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQLKGFAPT 237

Query: 268 ESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQFSQ 321
           +S KA  + +V SE S+  ASN  D    +  +  D++S    +S  +   L+Q S+F +
Sbjct: 238 DSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSSHEPSRS--KCTILDQFSRFLK 295

Query: 322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVG 381
           D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+IY+M+NADMMFGG+T+VCGI+G
Sbjct: 296 DMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILG 355

Query: 382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           T++GGF+LD M  TISNAFKLLS ATF+G   C  AF   S YGFLALF VGELLVFATQ
Sbjct: 356 TVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELLVFATQ 415

Query: 442 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ 484
            PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVG++Q
Sbjct: 416 GPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQ 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164805|ref|XP_003580172.1| PREDICTED: protein spinster homolog 1-like [Brachypodium distachyon]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/443 (72%), Positives = 365/443 (82%), Gaps = 9/443 (2%)

Query: 49  SLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGI 108
           S S  +   PSWFTPKRLLV+FC+INMLNYVDRG IASNGVNGS+ +C   G CTSGSGI
Sbjct: 100 STSGSAEEKPSWFTPKRLLVMFCIINMLNYVDRGVIASNGVNGSRGSCSG-GTCTSGSGI 158

Query: 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168
           QGDF LNNF+DGVLSSAFMVGLLVASPIFASLAK HNPFRLIGVGL VWT ATAGCG SF
Sbjct: 159 QGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSF 218

Query: 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228
           DFWSI ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG+
Sbjct: 219 DFWSITICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLAMFYMCIPTGIALGYVYGGL 278

Query: 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 288
           VG  L+WR AFWGE+ILMLPF +L FVIKPL+LKGF   +  K        E  + +N N
Sbjct: 279 VGKRLHWRAAFWGESILMLPFVILGFVIKPLELKGFTHNKKTKEYGPMLNPELRDETNNN 338

Query: 289 D------HVSEDISDQASER-SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341
                    +E ++++  +R S  S G+ + + ++  F QD K LLQEKVYV+NVLGYIA
Sbjct: 339 GIKQGVPAGTEGLTEKIPQRFSFSSFGK-KVMIEIGHFGQDMKELLQEKVYVINVLGYIA 397

Query: 342 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK 401
           YNFVIGAYSYWGPKAG +IY M++AD+MFGG+TIVCGI GT++GGFILD++ +TISNAFK
Sbjct: 398 YNFVIGAYSYWGPKAGQDIYKMASADLMFGGITIVCGIFGTLAGGFILDKIESTISNAFK 457

Query: 402 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM 461
           LLS ATFLGAI C +AFC  SLYGF+  F+VGELLVFATQAPVNY+CLH VKPSLR LSM
Sbjct: 458 LLSGATFLGAIFCFSAFCFKSLYGFIPFFSVGELLVFATQAPVNYICLHCVKPSLRPLSM 517

Query: 462 AISTVSIHIFGDVPSSPLVGVLQ 484
           A+STVSIHIFGDVPSSPLVG+LQ
Sbjct: 518 AMSTVSIHIFGDVPSSPLVGLLQ 540

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.451	0.454	0.731	1.1e-146
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.856	0.847	0.557	8.9e-125
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.665	0.635	0.617	9.5e-105
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.301	0.242	0.305	2.6e-20
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.416	0.406	0.282	1.9e-18
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.271	0.25	0.322	4.3e-18
RGD|1305613	528	Spns1 "spinster homolog 1 (Dro	0.271	0.25	0.322	8.8e-18
UNIPROTKB|F1RGP3	518	SPNS3 "Uncharacterized protein	0.414	0.389	0.271	2.5e-17
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.271	0.25	0.309	3.8e-17
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.271	0.235	0.309	4.4e-17

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
 Identities = 161/220 (73%), Positives = 181/220 (82%)

Query:    52 EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
             +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct:    24 KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query:   112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
             F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct:    84 FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query:   172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXS 231
             SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPT             S
Sbjct:   144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query:   232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK 271
              L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK
Sbjct:   204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGK 243

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 243/436 (55%), Positives = 304/436 (69%)

Query:    52 EDSPPTPS--WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQ 109
             E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GIQ
Sbjct:    13 EEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGIQ 72

Query:   110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD 169
             G+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++
Sbjct:    73 GEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYN 132

Query:   170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXX 229
             FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP             
Sbjct:   133 FWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYI 192

Query:   230 XSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNLN 288
              +HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K              ++ 
Sbjct:   193 GNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPST-----------SIE 241

Query:   289 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 348
                  D   +AS+   K+  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIGA
Sbjct:   242 TVAPTDA--EASQIKTKT-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGA 296

Query:   349 YSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATF 408
             YSYWGPKAG+ IY M NADM+F                ++LD++ AT+SN FKLL+A+T 
Sbjct:   297 YSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTL 356

Query:   409 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 468
             LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV I
Sbjct:   357 LGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLI 416

Query:   469 HIFGDVPSSPLVGVLQ 484
             HI GDVPSSPL G +Q
Sbjct:   417 HILGDVPSSPLYGKMQ 432

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 208/337 (61%), Positives = 241/337 (71%)

Query:   148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:   208 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   268 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 327
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 387
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   388 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 447
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   448 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ 484
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++Q
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQ 451

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
 Identities = 47/154 (30%), Positives = 76/154 (49%)

Query:   108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
             ++ DF + N   G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T   GS 
Sbjct:   141 VRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTL-LGSF 199

Query:   168 F-DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXX 225
                F W IA  R LVG+GEAS+ ++A   I D      ++  L++FY  IP         
Sbjct:   200 MKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIV 258

Query:   226 XXXXXSHL--NWRYAFWGEAILMLPFAVLAFVIK 257
                  +HL  +WR+A     IL +    L  +IK
Sbjct:   259 GSKT-AHLANDWRWALRVTPILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 68/241 (28%), Positives = 105/241 (43%)

Query:    35 HRPPPLAEAEMATR----SLSEDSP---P-TPSW--FTPKRLLV---IFCVINMLNYVDR 81
             HRP P      +T     S+S + P   P TP     + +R  +   + C IN+LNY+DR
Sbjct:     6 HRPKPRLSLRSSTTIRYGSMSSEHPDGDPSTPQTTSISQRRSYIAVAVLCYINLLNYMDR 65

Query:    82 GAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141
               IA              G+      IQ  F +++   G+L + F+   +  +P+F  L 
Sbjct:    66 YTIA--------------GVLLR---IQKFFFISDSTSGLLQTVFICSFMFLAPVFGYLG 108

Query:   142 KSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDD 197
               ++   ++ VGL +W   T G  SSF     FW +   R LVG GEAS+ ++A   I D
Sbjct:   109 DRYDRKLIMIVGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYSTIAPTIIGD 166

Query:   198 NAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILMLPFAVLAFV 255
                  ++T  +S FY+ IP                  +WR+A     A+  L   +L F+
Sbjct:   167 LFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGLGLLLLVFL 226

Query:   256 I 256
             I
Sbjct:   227 I 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1305613 Spns1 "spinster homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1RGP3 SPNS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 63/232 (27%), Positives = 105/232 (45%)

Query:    45 MATRSLSEDSPPT-PS-WFTPK-RLLV---IFCVINMLNYVDRGAIASNGVNGSQRTCDD 98
             +  R   E SPP+ P+ W  P+ R  +   + C IN+LNY++   IA             
Sbjct:    26 LGVRGSGEYSPPSSPAPWSLPRWRAYLAAAVLCYINLLNYMNWFIIA------------- 72

Query:    99 KGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT 158
              G+      +Q  F +++ + G+L + F+  LL+++P+F  L   H+    + VG+ +W+
Sbjct:    73 -GVLLD---VQKFFHISDSKAGLLQTVFIGCLLLSAPVFGYLGDRHSRKVTLSVGIILWS 128

Query:   159 FATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC 214
                AG  SSF      W   + R +VG+G AS+ ++A   + D     Q+T  L++FY+ 
Sbjct:   129 --GAGLSSSFISPSHAWLFFLSRGVVGIGTASYSTIAPTVLGDLFVRDQRTCVLAIFYLF 186

Query:   215 IPTXXXXXXXXXXXXXSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
             IP                  NWR+A      L     +L  V+ P   +G A
Sbjct:   187 IPVGSGLGYVLGSAVAELSGNWRWALRITPCLEAVALILLLVLVPDPPRGAA 238

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    61 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    94 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFDIGDSSSGLIQTV 136

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   137 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVG 194

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   195 VGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IKF6	SPNS3_ARATH	No assigned EC number	0.6476	0.9240	0.8823	yes	no
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.7043	0.8275	0.8326	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-19
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-18
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	5e-08
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	5e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.001
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.001
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	0.003
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.004

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 67  LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAF 126
           L++  +   L+ +DRG ++                      +  D  L+  Q G++ SAF
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPL-----------------LAEDLGLSASQAGLIVSAF 43

Query: 127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186
            +G  + S +   L+      R++ +GL ++   +     +   W + + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 246
               AA  I +  P  ++   L +F      G  LG + GG++   L WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 247 LPFAVLAFVIKPL 259
           L  A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 67/364 (18%), Positives = 124/364 (34%), Gaps = 47/364 (12%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           +  D  ++  + G+L +AF +G  +A P+   L+      R++ +GL ++         +
Sbjct: 23  LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
              W + + R+L G+G  +    AA  I D  P  ++   L +       G ALG + GG
Sbjct: 83  SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           ++ S   WR AF   AIL L  AVLA ++ P                             
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLP----------------------------R 174

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
               S+         +         L                   +  +L  + + F   
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKLLLRD---------------PVLWLLLALLLFGFAFF 219

Query: 348 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA 406
           A   + P     +  +S     +  G+  + G +G +  G + D++G        LL   
Sbjct: 220 ALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI 278

Query: 407 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV 466
                +  L +   SSL+  +AL  +G          +N +         R  +  +   
Sbjct: 279 LAALGL-ALLSLTESSLWLLVALLLLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNT 336

Query: 467 SIHI 470
           +  +
Sbjct: 337 AGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G+L + + +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G G A  +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 240 WGEAILML-PFAVLAFVIKP 258
              AIL L  F +LAF++  
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 40/354 (11%)

Query: 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG 165
             I  ++ L+  Q G L SA ++G+   +  F  LA      R++   + +++  T  C 
Sbjct: 41  PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCA 100

Query: 166 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225
            + +   + I R L G+G    +      + + AP   +   + + +   P G A+G   
Sbjct: 101 LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160

Query: 226 GGVVGSHLNWRYAFW-GEAILMLPFAVLAFV----IKPLQLKGFAPAESGKAQVVASVSE 280
            G +     WR  F+ G    +L   +L       I  L  K          + + +   
Sbjct: 161 AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-----PETVRRIVNAIA 215

Query: 281 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVL 337
               +     + E  + Q ++RS+                   K L Q    ++ V+  L
Sbjct: 216 PQMQAEAQSALPEQKATQGTKRSVF------------------KALFQGKTARITVLLWL 257

Query: 338 GYIAYNFVIGAYSYWGPK----AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMG 393
            Y      +   + W PK     G++     +     G +    G++G+I  G++ D++G
Sbjct: 258 LYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLG 313

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA-LFTVGELLVFATQAPVNY 446
             ++    LL A   +   S L +  L  L G +A  F  G          + Y
Sbjct: 314 PRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 65/357 (18%), Positives = 122/357 (34%), Gaps = 67/357 (18%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G L +A+ +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G+    F S+AA       P  ++   L++ +  +     LG   G  +G    WR  F
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
              A+L    A+LA +   L  K   P+E   +                           
Sbjct: 171 LAIAVL----ALLALL---LLWKLLPPSEISGS--------------------------- 196

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
                           L    +   VLL     +   L    +      Y+Y  P    +
Sbjct: 197 --------LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-S 240

Query: 360 IYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           +   S +      + FG    + G +G + GG + D+         + L AA  L A++ 
Sbjct: 241 VAGFSVSAVSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA- 289

Query: 415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHI 470
           L A   +     LAL  +       + A        + + P    L+ +++  + ++
Sbjct: 290 LLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL 346

Length = 394

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 228
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 229 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 275
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 335
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 393
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 433
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGS 166
           +Q    L+  + G+L S F +G ++ + +   L+ +      L+ +GL +          
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 167 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226
           +     + +  +L+G G             + AP   +     +F      G ALG +  
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257
           G++     +   F   A L L  A+L  ++ 
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 71/358 (19%), Positives = 122/358 (34%), Gaps = 71/358 (19%)

Query: 76  LNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASP 135
           +NY+DR  ++                  +   +Q D  L+  Q G + SAF  G +V   
Sbjct: 5   INYLDRANLSF-----------------AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQF 47

Query: 136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS-----L 190
               L       + + V + +W   T     +  + S+ I R+L+G  EA F       +
Sbjct: 48  PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLP 248
           A+ F     P  ++   +S+F      G  +G    G +  H +W++AF  E +L  +  
Sbjct: 108 ASWF-----PASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L F+  P Q   +   E     V   ++E                      + K   
Sbjct: 163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGP---------------STPKK-- 205

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHM 363
                       Q  ++L   +V+ +  LG    N  +G +  W P     + G +I   
Sbjct: 206 -----------YQIKELLKDRRVWGL-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA 253

Query: 364 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS 421
                    +  + G +G I GG + D     +    K L  A     I+ L    L 
Sbjct: 254 G----FMASLPGIVGFIGMILGGRLSD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           I GD   +  Q   + +++M+   ++ P+   LAK     RL  +    +T  +  CG +
Sbjct: 28  IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
            +   + I R++ G G    I L+   + +  P  ++   ++++ + +    ALG   GG
Sbjct: 88  PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES 269
            +  + +WR+ F       +P  ++  V+    L    PA S
Sbjct: 148 WIIENYHWRWIFLIN----VPIGIIVVVVAFFILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 5/138 (3%)

Query: 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 394
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 395 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 454
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 455 SLRALSMAISTVSIHIFG 472
             R  +  +      + G
Sbjct: 297 EARGTASGLFNTFGSLGG 314

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 164 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 224 VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 48/298 (16%)

Query: 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS 166
            +  D  L+  Q G+L SAF +   V+  +   L+   NP   +  GL +        G 
Sbjct: 54  ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF 113

Query: 167 SFDFWSIAICRMLVGV-----GEASFISLAAPFIDDNAPVPQKTAWLSMFYMC--IPTGV 219
           S   +  A+  +L G            ++   F        ++  W S++     I   +
Sbjct: 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF-----SRKERGTWWSIWNTSHNIGGAL 168

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI---KPLQLKGFAPAESGKAQVVA 276
           A           H  WR AF+   I+ +  A++   +   +P Q +G  P E  +     
Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP-QSEGLPPIEEYRG---- 223

Query: 277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
                 +   + +   E+    A +  +K +      N+L        + L   + + NV
Sbjct: 224 ------DPLEIYEEEKENEGLTAWQIFVKYV----LKNKL--------IWL---LALANV 262

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI--VCGIVGTISGGFILDQM 392
             Y+    V    + WGP     +   S     +  +++  V G+ GT+  G++ D++
Sbjct: 263 FVYV----VRYGINDWGPLYLSEVKGFSLVKANW-AISLFEVAGLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK--SHNPFRLIGVGLSVWTFATAGCGSS 167
           G    +    G++ S F VG L+ S     L          LIG  L V        G +
Sbjct: 39  GACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFV--IGALLQGFA 96

Query: 168 FD--FWSIAICRMLVGVGEASFISLAAP-FIDDNAPVPQKTAWLSMFYMCIPTGVALGYV 224
               F+ + + R++VG+G    IS+  P +I + AP   + A  S++ + I  G+ +  +
Sbjct: 97  KGKSFYMLIVGRVIVGLG-VGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAI 155

Query: 225 YG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256
            G       +   WR     + +  +   +    +
Sbjct: 156 IGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFL 190

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00805	633	oat sodium-independent organic anion transporter.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.98
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.98
TIGR00898	505	2A0119 cation transport protein.	99.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.98
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK12382	392	putative transporter; Provisional	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
KOG0569	485	consensus Permease of the major facilitator superf	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PRK09528	420	lacY galactoside permease; Reviewed	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
PTZ00207	591	hypothetical protein; Provisional	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
KOG3626	735	consensus Organic anion transporter [Secondary met	99.91
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.91
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
PRK09669	444	putative symporter YagG; Provisional	99.85
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.84
PF13347	428	MFS_2: MFS/sugar transport protein	99.84
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.83
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.82
PRK10429	473	melibiose:sodium symporter; Provisional	99.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.8
KOG2563	480	consensus Permease of the major facilitator superf	99.79
PRK09848	448	glucuronide transporter; Provisional	99.78
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.74
PRK11462	460	putative transporter; Provisional	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.71
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.69
COG2211	467	MelB Na+/melibiose symporter and related transport	99.67
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.58
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.57
PRK15011	393	sugar efflux transporter B; Provisional	99.55
PRK09528	420	lacY galactoside permease; Reviewed	99.55
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.54
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.52
PRK05122	399	major facilitator superfamily transporter; Provisi	99.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
PRK10489	417	enterobactin exporter EntS; Provisional	99.49
PRK12382	392	putative transporter; Provisional	99.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.48
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.44
PRK03699	394	putative transporter; Provisional	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.42
PRK09705	393	cynX putative cyanate transporter; Provisional	99.41
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.4
PRK03633	381	putative MFS family transporter protein; Provision	99.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.35
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.33
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.28
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.27
PRK09952	438	shikimate transporter; Provisional	99.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.23
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.22
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.2
TIGR00900	365	2A0121 H+ Antiporter protein.	99.2
PRK12307	426	putative sialic acid transporter; Provisional	99.18
PRK15075	434	citrate-proton symporter; Provisional	99.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
PRK10054	395	putative transporter; Provisional	99.17
PRK10504	471	putative transporter; Provisional	99.16
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.15
TIGR00895	398	2A0115 benzoate transport.	99.14
TIGR00898	505	2A0119 cation transport protein.	99.14
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.12
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.1
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.1
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.1
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.08
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.08
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.07
PRK10091	382	MFS transport protein AraJ; Provisional	99.06
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.05
KOG3762	618	consensus Predicted transporter [General function	99.04
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.04
KOG0569	485	consensus Permease of the major facilitator superf	99.01
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.01
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.01
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.99
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.93
PRK10133	438	L-fucose transporter; Provisional	98.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.91
COG0477	338	ProP Permeases of the major facilitator superfamil	98.9
TIGR00901	356	2A0125 AmpG-related permease.	98.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.89
PRK09848	448	glucuronide transporter; Provisional	98.89
PF13347	428	MFS_2: MFS/sugar transport protein	98.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.84
KOG3762	618	consensus Predicted transporter [General function	98.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.82
PRK11043	401	putative transporter; Provisional	98.81
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.79
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.78
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.77
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.77
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.77
KOG0637	498	consensus Sucrose transporter and related proteins	98.76
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.72
KOG3810	433	consensus Micronutrient transporters (folate trans	98.7
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.69
PRK09669	444	putative symporter YagG; Provisional	98.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.65
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.64
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.6
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.56
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.54
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.52
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.49
KOG2532	466	consensus Permease of the major facilitator superf	98.43
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.42
COG2211	467	MelB Na+/melibiose symporter and related transport	98.38
PRK11462	460	putative transporter; Provisional	98.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.31
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.29
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.28
KOG0254	513	consensus Predicted transporter (major facilitator	98.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.21
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.13
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.09
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.06
PTZ00207	591	hypothetical protein; Provisional	98.05
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.04
TIGR00805	633	oat sodium-independent organic anion transporter.	98.03
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.91
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.88
KOG2615	451	consensus Permease of the major facilitator superf	97.87
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.82
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.75
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.74
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.67
KOG2533	495	consensus Permease of the major facilitator superf	97.66
PF12832	77	MFS_1_like: MFS_1 like family	97.65
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.63
KOG3880	409	consensus Predicted small molecule transporter inv	97.27
COG3202	509	ATP/ADP translocase [Energy production and convers	97.25
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.13
PRK03612	521	spermidine synthase; Provisional	97.09
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.05
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.68
PF12832	77	MFS_1_like: MFS_1 like family	96.59
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.29
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.2
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.16
KOG2563	480	consensus Permease of the major facilitator superf	96.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.88
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.44
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.91
KOG0637	498	consensus Sucrose transporter and related proteins	94.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.51
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.47
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.01
KOG3097	390	consensus Predicted membrane protein [Function unk	92.32
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.96
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	91.87
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	90.69
COG0477	338	ProP Permeases of the major facilitator superfamil	89.21
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	87.99
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	85.26
KOG3880	409	consensus Predicted small molecule transporter inv	85.21
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	83.95
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	83.25
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	81.42
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	81.11
KOG3626	735	consensus Organic anion transporter [Secondary met	80.14

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-40  Score=297.08  Aligned_cols=379  Identities=16%  Similarity=0.144  Sum_probs=307.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      .+++++..+++++...|+.|.+++.+                 +|.+.+|.++|..|+|++.|.+++.++++-++.|.++
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a-----------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~s   88 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLA-----------------MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLS   88 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhc-----------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            34568888899999999999999874                 5999999999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      ||.++|..+.+++++.++.+++++++++++.+.+..+++|..+|.-+|.+...+..|++++|||+..++++++-++|..+
T Consensus        89 Dr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal  168 (448)
T COG2271          89 DRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL  168 (448)
T ss_pred             ccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH--HhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhh
Q 011369          222 GYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA  299 (487)
Q Consensus       222 g~~~~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (487)
                      .|++.  +.+..+.+||..|++.++++++.+++.++..+++|....-++-++...+.               .+..+   
T Consensus       169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~---------------~e~~~---  230 (448)
T COG2271         169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDP---------------LEIYE---  230 (448)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCc---------------hhhhh---
Confidence            99999  89999899999999999999999999999887765544333222111000               00000   


Q ss_pred             hhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeeccc
Q 011369          300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCG  378 (487)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~  378 (487)
                       ++++.+        .....-.-.+.+++||.+|.+++.+++....-+++..|.|.|+.|..|++...+ ...+.+-+++
T Consensus       231 -~~~~~~--------~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~ag  301 (448)
T COG2271         231 -EEKENE--------GLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAG  301 (448)
T ss_pred             -hhccCC--------CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence             000000        000001235568999999999999999999999999999999999999997776 5556778999


Q ss_pred             chhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCc
Q 011369          379 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL  456 (487)
Q Consensus       379 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (487)
                      ++|++++||++||+.+.++.  +..++..+...++.......+  +.+...++++..|++..+-+..+-....|..|++.
T Consensus       302 l~G~Ll~GwlSDklfkgrR~--p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A  379 (448)
T COG2271         302 LPGTLLAGWLSDKLFKGRRG--PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA  379 (448)
T ss_pred             hHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh
Confidence            99999999999998633221  344444444444444444443  34666777777787777776666677888898899


Q ss_pred             hhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          457 RALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       457 r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .|++.|+...+.+..|++.+....|++.|.
T Consensus       380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         380 AGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             ccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            999999986666666999999999999885

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.2e-39  Score=288.89  Aligned_cols=374  Identities=37%  Similarity=0.594  Sum_probs=299.5

Q ss_pred             CCccccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHH
Q 011369           58 PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIF  137 (487)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~  137 (487)
                      ..++..++.+.++++...+++.|+..+...                 ++.+++.||++++..|++.+.+.+.+.+++|+.
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv-----------------~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~   88 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGV-----------------LKEVQTYFNISDSELGLLQTVFIVVFMIASPLF   88 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhh-----------------hHHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence            345556678999999999999999998864                 389999999999999999999999999999999


Q ss_pred             HHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh
Q 011369          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (487)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (487)
                      |+++|||.||+++.+|.++|.++.++++++..||++.++|.+.|+|.+...|.++++++|.+|..+|++++++++.+..+
T Consensus        89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv  168 (493)
T KOG1330|consen   89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV  168 (493)
T ss_pred             HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccch
Q 011369          218 GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  296 (487)
Q Consensus       218 G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (487)
                      |..+|.+.+..+.++.+ |||.|+..++++++++++.+++.+|+++...++.+.+...                      
T Consensus       169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----------------------  226 (493)
T KOG1330|consen  169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----------------------  226 (493)
T ss_pred             ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----------------------
Confidence            99999999999988766 9999999999999999999999877544311111100000                      


Q ss_pred             hhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccc---c-ccceeeec
Q 011369          297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM---S-NADMMFGG  372 (487)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~-~~~~~~~~  372 (487)
                                      .+...+.+++.+.+.+++.+....+.+....+....+..|.|.+.+..+.+   + .....+..
T Consensus       227 ----------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~  290 (493)
T KOG1330|consen  227 ----------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGG  290 (493)
T ss_pred             ----------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhh
Confidence                            022345567888888889888888888888888888888888876554322   2 23346677


Q ss_pred             eeecccchhhhhhhhhHhhhcccchhhh-----HHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCe
Q 011369          373 VTIVCGIVGTISGGFILDQMGATISNAF-----KLLS-AATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPV  444 (487)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (487)
                      +...++.+|.+++|.++||+.++.++..     .... .+....+..+.+..  ...+.+..+++.++.-......+.+.
T Consensus       291 vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n  370 (493)
T KOG1330|consen  291 VTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATN  370 (493)
T ss_pred             HHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccc
Confidence            8889999999999999999766433310     1111 11122222222222  12344555555555555666778888


Q ss_pred             eEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          445 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       445 ~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+..+.+||+.|.++.++...+...+|.+.+|++.|.+.|+
T Consensus       371 ~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  371 NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             cceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            899999999999999999998888999999999999999886

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.8e-38  Score=304.82  Aligned_cols=381  Identities=17%  Similarity=0.214  Sum_probs=269.9

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      +|+++..+++.++++++|+.+++..                 .|.+++|+|++..+.|++.+++.+++++++++.|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d   68 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFA-----------------GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA   68 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHH-----------------HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4568888888999999999999875                 38899999999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhH
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (487)
                      |+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..++
T Consensus        69 r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~  148 (412)
T TIGR02332        69 IIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG  148 (412)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCC-CCcccchhhcccccCcccCCCcccccccc
Q 011369          223 YVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP-AESGKAQVVASVSEGSEASNLNDHVSEDI  295 (487)
Q Consensus       223 ~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (487)
                      +++++.+.+      ..|||+.|++.+++.++..++.+++.||++++.+. .+++++...+....  +..+. ++..+..
T Consensus       149 ~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~~~~~  225 (412)
T TIGR02332       149 LILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDN--DQLTL-EQPEGAF  225 (412)
T ss_pred             HHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHh--ccccc-ccccccc
Confidence            999988763      46999999999998887777777777775533110 00000000000000  00000 0000000


Q ss_pred             hhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeec-ccccccce-eeece
Q 011369          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADM-MFGGV  373 (487)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~-~~~~~  373 (487)
                               .        +........++.++ ++.+|...+.+++.....+.+.+|+|.++++. .+.+.... .....
T Consensus       226 ---------~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~  287 (412)
T TIGR02332       226 ---------A--------HAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI  287 (412)
T ss_pred             ---------c--------cccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence                     0        00000011233333 57788888877877778888889999999873 35554444 45567


Q ss_pred             eecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC
Q 011369          374 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK  453 (487)
Q Consensus       374 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (487)
                      ..++.+++.++.|+++||+++|+    ...........+...+.....+....+...++..++.....+.......+..|
T Consensus       288 ~~l~~~~g~l~~g~l~dr~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  363 (412)
T TIGR02332       288 PQFCTIFGMIWWSRHSDRLKERK----HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS  363 (412)
T ss_pred             HHHHHHHHHHHHHHHhcccCccH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccc
Confidence            77889999999999999999773    12222222222222222222222222222222222222222222333345677


Q ss_pred             CCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          454 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       454 ~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.|+++.|+. .....+|++++|.+.|.+.|.
T Consensus       364 ~~~~~~a~g~~-~~~~~~g~~~~p~~~g~i~~~  395 (412)
T TIGR02332       364 LQARAIAIAVI-NATGNIGSALSPFLIGILKDA  395 (412)
T ss_pred             hHHHHHHHHHH-HHhhhhhhhhhhhhccccccc
Confidence            89999999998 556667889999999999885

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-38  Score=287.82  Aligned_cols=346  Identities=18%  Similarity=0.190  Sum_probs=283.2

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G  145 (487)
                      .+..+.++.|....+......                 .+|++.+|+|+|..+.|+..|+|.++..++.++...+.||+.
T Consensus        14 ~l~aLa~~~F~igttEfv~~g-----------------LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~   76 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVG-----------------LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE   76 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHh-----------------chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            444555555555554444443                 359999999999999999999999999999999999999999


Q ss_pred             CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHH
Q 011369          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (487)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  225 (487)
                      ||++++..+.++.++++++++++||+.++++|++.|+..|.+++....+..+..|+++|++++++...+..++.++|.++
T Consensus        77 Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL  156 (394)
T COG2814          77 RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL  156 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhc
Q 011369          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  305 (487)
Q Consensus       226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (487)
                      |.++.+.+|||++|++.++++++..+..+..+|  +++  .+++.+..                                
T Consensus       157 Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~--~~~~~~~~--------------------------------  200 (394)
T COG2814         157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE--ISGSLPGP--------------------------------  200 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--CCCCCCcc--------------------------------
Confidence            999999999999999999999999999988888  111  11111000                                


Q ss_pred             cccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhh
Q 011369          306 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS  384 (487)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  384 (487)
                                    .++..+++|+|.++...+..++...+.+...+|+..++++..|++.... .....+++++++|..+
T Consensus       201 --------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~  266 (394)
T COG2814         201 --------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL  266 (394)
T ss_pred             --------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence                          1223457899999999999999999999999999999999999987666 6667888999999999


Q ss_pred             hhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHH
Q 011369          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  463 (487)
Q Consensus       385 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~  463 (487)
                      +|++.|| +.|     +.+.....+.+...+.+. ...+.+...+..+++++..............+ .-|+.++.+.++
T Consensus       267 gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl  339 (394)
T COG2814         267 GGRLADR-GPR-----RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL  339 (394)
T ss_pred             Hhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence            9999999 665     555555444444444444 34455556666666776666655555555555 446889999999


Q ss_pred             HHHHHHhhcCCCccceeeeeecc
Q 011369          464 STVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       464 ~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      + .....+|..+|..++|.+.|+
T Consensus       340 ~-~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         340 N-VAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHh
Confidence            6 666666888999999988875

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2.9e-38  Score=308.93  Aligned_cols=373  Identities=15%  Similarity=0.120  Sum_probs=268.6

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      .++++..+++.++..+.|+.+++..                 +|.+.+|+|++..+.|++.+++.+++++++++.|+++|
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAA-----------------QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            4557778888899999999999864                 48999999999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhc-----chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (487)
                      |+|||+++.+++++++++.++.++     ++|++.+++.|+++|++.+...+....+++||+|+++||+++|++..+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999999988888777766554     689999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCccccccc
Q 011369          218 GVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (487)
Q Consensus       218 G~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (487)
                      |.+++++++..+....   +||..|.+.+++.++..++.+++.++.+++....++++      ..   .+... ++    
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~------~~---~~~~~-~~----  235 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE------IF---GEPIS-EE----  235 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh------cc---cCccc-hh----
Confidence            9999999887766543   69999999888888777766666555332211100000      00   00000 00    


Q ss_pred             chhhhhhhhhccccccchhhhhhhhhHH-HHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeec
Q 011369          295 ISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (487)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (487)
                          ....+.+.       ..   ..+. .+..+++|.+|...+..++......+..+|.|.|+++.+|.+..+. ....
T Consensus       236 ----~~~~~~~~-------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~  301 (467)
T PRK09556        236 ----DKETESTD-------MT---KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFT  301 (467)
T ss_pred             ----hhcccccc-------Cc---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence                00000000       00   0011 2236789999998888888877777788999999988888886655 4445


Q ss_pred             eeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEe
Q 011369          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC-LTAF-CLSSLYGFLALFTVGELLVFATQAPVNYVCLH  450 (487)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (487)
                      ...++.+++.+++|+++||+++|+     ............. +... ...+.+...+..++.+++.............+
T Consensus       302 ~~~~~~~ig~~~~G~lsDr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  376 (467)
T PRK09556        302 LFEIGALVGSLLWGWLSDLANGRR-----ALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVG  376 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCc-----hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            667788999999999999999883     3322222222211 1111 12233333344444443332222222234458


Q ss_pred             ecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          451 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       451 ~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      ..|++.+|++.|+.+...+..|.+++|.+.|++.|
T Consensus       377 ~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        377 FVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            88889999999998665565677899999999988

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.1e-37  Score=311.30  Aligned_cols=400  Identities=15%  Similarity=0.135  Sum_probs=281.0

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      ..|+++.+++++.+...+|...++..                 +|.+.++++++..+.+++.+++.++.+++++++|+++
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~i-----------------lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~Ls  226 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFV-----------------LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLA  226 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777788888877653                 4889999999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      ||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+....++.|++|+++|++.++++..++.+|.++
T Consensus       227 DR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il  306 (742)
T TIGR01299       227 DKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY  306 (742)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccc-------------cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc---ccchhhcccccCcccC
Q 011369          222 GYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES---GKAQVVASVSEGSEAS  285 (487)
Q Consensus       222 g~~~~~~l~~~-------------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~  285 (487)
                      ++.++..+...             .+||+.+++.+++.++. ++..+++||++++...+.+   ..+..++....+....
T Consensus       307 a~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~  385 (742)
T TIGR01299       307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAK  385 (742)
T ss_pred             HHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCc
Confidence            99887666532             36999999887765554 4455666888766432222   1111111111000000


Q ss_pred             -CCcccc-cccchhhhhhh-----hhccccc-----cchhhhhhhhhHHHHhhhcc---hhHHHHHHHHHHHHhhheeee
Q 011369          286 -NLNDHV-SEDISDQASER-----SIKSIGE-----SRFLNQLSQFSQDTKVLLQE---KVYVVNVLGYIAYNFVIGAYS  350 (487)
Q Consensus       286 -~~~~~~-~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  350 (487)
                       ...... .+..+......     .......     .+........+..++.+++.   ++.+..++.++...++++++.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~  465 (742)
T TIGR01299       386 GHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLS  465 (742)
T ss_pred             CchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000000 00000000000     0000000     00000111222334444443   345666777788888899999


Q ss_pred             ecccceeeec----c-------------------------------------cc-----c---------------c----
Q 011369          351 YWGPKAGYNI----Y-------------------------------------HM-----S---------------N----  365 (487)
Q Consensus       351 ~~~p~~~~~~----~-------------------------------------~~-----~---------------~----  365 (487)
                      .|+|.++++.    +                                     ++     .               .    
T Consensus       466 ~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (742)
T TIGR01299       466 VWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTF  545 (742)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchh
Confidence            9999764321    0                                     00     0               0    


Q ss_pred             -------------------------------------------------c-ceeeeceeecccchhhhhhhhhHhhhccc
Q 011369          366 -------------------------------------------------A-DMMFGGVTIVCGIVGTISGGFILDQMGAT  395 (487)
Q Consensus       366 -------------------------------------------------~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  395 (487)
                                                                       . ......+..++.+++.+++|+++||+|||
T Consensus       546 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr  625 (742)
T TIGR01299       546 FKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL  625 (742)
T ss_pred             hhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence                                                             0 00112344477789999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCC
Q 011369          396 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                           ++++++.++.++++++.....+...++++.++.+++.++.++....++.+.+|++.|++++|+. .....+|+++
T Consensus       626 -----~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~-~~~~rlGaii  699 (742)
T TIGR01299       626 -----RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL-NALCKAAAVL  699 (742)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-HHHHHHHHHH
Confidence                 7777777777777776666655555666666777777777788888899999999999999997 6777789999


Q ss_pred             ccceeeeeec
Q 011369          476 SSPLVGVLQV  485 (487)
Q Consensus       476 ~p~~~g~l~~  485 (487)
                      ||+++|.+.+
T Consensus       700 gp~i~g~L~~  709 (742)
T TIGR01299       700 GILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=4.1e-37  Score=297.92  Aligned_cols=377  Identities=15%  Similarity=0.167  Sum_probs=263.7

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++++..+++.++..++++..++..                 +|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   84 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAA-----------------MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            346666777778877777766543                 488999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      +|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+....++.|++|+++|++++++++.+.++|..+++
T Consensus        85 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~  164 (434)
T PRK11663         85 SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP  164 (434)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhh
Q 011369          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (487)
Q Consensus       224 ~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (487)
                      ++++.+.+.+|||+.|++.+++.++..++..+..||++++...++..+...+..            +..        ++.
T Consensus       165 ~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~------------~~~--------~~~  224 (434)
T PRK11663        165 LVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL------------ELA--------QQQ  224 (434)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc------------ccc--------hhc
Confidence            999999999999999999988877666555555565433211111000000000            000        000


Q ss_pred             hccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhh
Q 011369          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (487)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (487)
                      +..   .   .+.++..+  +..++++.++...+..++.......+..|+|.|+.+..|.+.... ....+..+++.+++
T Consensus       225 ~~~---~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~  296 (434)
T PRK11663        225 EGA---G---LSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA  296 (434)
T ss_pred             ccc---C---CChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            000   0   00011111  125678888888777777776677777899999977778876555 45566778899999


Q ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHH
Q 011369          383 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA  462 (487)
Q Consensus       383 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g  462 (487)
                      ++.|++.||+.++++.................+......+........+..+++.............+..|++.|+++.|
T Consensus       297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  376 (434)
T PRK11663        297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATG  376 (434)
T ss_pred             HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHH
Confidence            99999999994332111111211111111111111112222222222222232221111112233456677899999999


Q ss_pred             HHHHHHHhhcCCCccceeeeeecc
Q 011369          463 ISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       463 ~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +. .....+|.+++|.+.|++.|+
T Consensus       377 ~~-~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        377 FV-GLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HH-HHHHHHHHHHhcccHHHHHHh
Confidence            97 566777889999999998875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=4.6e-37  Score=302.06  Aligned_cols=397  Identities=13%  Similarity=0.062  Sum_probs=288.2

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      +|.++..+++..++..+|.++++..                 +|.+.+|+|.+.++.+|+.+.|.++..++.+++|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a-----------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D   66 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA-----------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD   66 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557788899999999999998864                 59999999999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC-CCCchhHHHHHHHhhhhhhhhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      |+|||++++++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++++++.....+|..+
T Consensus        67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888887776 6789999999999999999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhccc-------ccCcccCCCccccccc
Q 011369          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------SEGSEASNLNDHVSED  294 (487)
Q Consensus       222 g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  294 (487)
                      ||.+++.+.++++|||.|++...+.++..++.++..|+.+.+..  ++.+.......       ................
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  224 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV  224 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHHHHhccccCCchHH
Confidence            99999999999999999999988887777777777676432110  00000000000       0000000000000000


Q ss_pred             chhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeece
Q 011369          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGV  373 (487)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~  373 (487)
                      ....................+.++...+ .+++++|.+....+..+...........+.|.|+++..|.++.+. .....
T Consensus       225 ~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~  303 (495)
T PRK14995        225 TSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLP  303 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            0000000000000000000001111122 357888888887777777777777777889999999899987776 45555


Q ss_pred             eecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCeeEEEEe
Q 011369          374 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLH  450 (487)
Q Consensus       374 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (487)
                      ..++..++.++.|++.||+++|     +.+..+..+..+........   .+.+......++.+++.+...++......+
T Consensus       304 ~~~~~~~~~~~~g~l~~r~g~~-----~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~  378 (495)
T PRK14995        304 VMVASGFSGPIAGILVSRLGLR-----LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA  378 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            6678888999999999999987     56555555554444333222   233445556777788888877777778888


Q ss_pred             ecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          451 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       451 ~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      .+|+++++.+.++. .....+|..+|+.+.|.+.+
T Consensus       379 ~~~~~~~g~~~~~~-~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        379 AAPPEKAAAAGAIE-TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             cCCHHhcchHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999996 66677788889988888765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.5e-37  Score=292.01  Aligned_cols=330  Identities=12%  Similarity=0.017  Sum_probs=241.9

Q ss_pred             ccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 011369          102 CTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (487)
Q Consensus       102 ~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (487)
                      .|.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|+++++++|+++|
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999998766555544444333333479999999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      ++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+++|||+.|++.++++++..++.++..||++
T Consensus        91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99996 55666677999999999999999999999999999999999999999999999999998888777777778754


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                      ++..  +.. ..                                        +   +..+++++++++|.+|...+..++
T Consensus       170 ~~~~--~~~-~~----------------------------------------~---~~~~~~~~ll~~~~~~~~~~~~~~  203 (368)
T TIGR00903       170 FQAA--EGF-GF----------------------------------------K---DAVKEFGALAGRKDLWIIGAILGF  203 (368)
T ss_pred             CCCC--CCc-ch----------------------------------------H---HHHHHHHHHHcChhHHHHHHHHHH
Confidence            3211  000 00                                        0   001235678899999999999999


Q ss_pred             HHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011369          342 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (487)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (487)
                      .....+.+.+|+|.|+++ .+++........   +....+.+..++++||..|+..++ ........+.++.........
T Consensus       204 ~~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~---l~~~~g~~g~~~~~d~~~r~~~r~-~~~~~~~~~~a~~~~~~~~~~  278 (368)
T TIGR00903       204 GVALFDNLAIWLEAALRP-AGLEDIAGDAVA---LAILAGLIGVAVIPDRVARAGLRS-IYIRAAALLIAAFFLALAFEL  278 (368)
T ss_pred             HHHHHHHHHHHHHHHHHH-CCCChHHHHHHH---HHHHHHHHHHHHhhHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999976 456643222222   333445555689999987653221 222222233333333333233


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                      +....+.+.++.+++....++..+.+..|.+|++.|+++.|+. .....+|++.+|.+.|.+.
T Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~-~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       279 NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAI-GFTSRAISVALALAAMLFI  340 (368)
T ss_pred             ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchh-hHHHHHHHHHHHHHHHHHh
Confidence            3333444555566666666666677888999999999999997 5555557777887776543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.6e-36  Score=290.50  Aligned_cols=324  Identities=17%  Similarity=0.133  Sum_probs=248.9

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|.+.+|+|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|+++++++|+++|++.
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+...+++.|++|+++|+++++++..+.++|..++|++++.+.+++|||+.|++.+++.++..+..++..|+.++  
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--  189 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--  189 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--
Confidence            999999999999999999999999999999999999999999999999999999999998887776665555554211  


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                         ++++.                                               .++.++.+++|.++......++...
T Consensus       190 ---~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        190 ---EHSGS-----------------------------------------------LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             ---CCcch-----------------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence               00000                                               0123456778877765555554444


Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  423 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (487)
                      .......+.+.++++..|.+.... .+.....++.+++.++.+++.||+++|     ..............++....++.
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~l~~~~~~~  294 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIAIALLLVCLLLLLPAANSE  294 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHhchH
Confidence            444445667777777777776555 444556678899999999999999876     44333333333332333334455


Q ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          424 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      +..++..++.+++.....+.......+.. ++.|+++.|+. .....+|..+||.+.|++.|++
T Consensus       295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~~~~g~~~G~~~~G~~~~~~  356 (390)
T PRK03545        295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLA-PDATDVAMALF-SGIFNIGIGAGALLGNQVSLHL  356 (390)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHhC-CCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence            55555666666665544444444444544 57889999987 5566778888999999988753

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.3e-35  Score=286.23  Aligned_cols=358  Identities=18%  Similarity=0.188  Sum_probs=267.8

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      ++|.++.++++..+.+++|...++..                 .|.+.+|+|.++.+.+++.+.+.++..+++++.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~   74 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVA-----------------APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA   74 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777778888888888887753                 4889999999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      ||+|||+++..+.++..++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus        75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  154 (406)
T PRK11551         75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL  154 (406)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhh
Q 011369          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (487)
Q Consensus       222 g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (487)
                      ++.+++.+.+..+||+.|++.+++.++..++..+..||++++..++++++.                   .+        
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------~~--------  207 (406)
T PRK11551        155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ-------------------RA--------  207 (406)
T ss_pred             HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh-------------------hh--------
Confidence            999999998889999999998887766666666666664322110000000                   00        


Q ss_pred             hhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccch
Q 011369          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  380 (487)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (487)
                                  +..    +...+..+.+..+...+..+......+....|.|.++++ .|.+.... .......++.++
T Consensus       208 ------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~  270 (406)
T PRK11551        208 ------------PVL----RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGAL  270 (406)
T ss_pred             ------------hhH----HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHH
Confidence                        000    000000011222223333333334444556678888877 56665554 444566688899


Q ss_pred             hhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHH
Q 011369          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (487)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (487)
                      +.++.|++.||+++|     +.+........+..+.....++.+...+..++.+++.....+....+..+.+|++.|+++
T Consensus       271 ~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  345 (406)
T PRK11551        271 GSLLIGALMDRLRPR-----RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTG  345 (406)
T ss_pred             HHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhh
Confidence            999999999999987     555544444444444333344444455555566666666666677788889999999999


Q ss_pred             HHHHHHHHHhhcCCCccceeeeeecc
Q 011369          461 MAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       461 ~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .|+. .....+|..+||.+.|++.|+
T Consensus       346 ~g~~-~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        346 VGAA-VAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             hhHH-HHhhhHHHHHHhhhHhhhhcc
Confidence            9997 566777888999999998774

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.7e-35  Score=285.03  Aligned_cols=353  Identities=20%  Similarity=0.202  Sum_probs=260.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      .|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++|++.++++|+++|++.
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE   96 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++..++.++..||++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA  176 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc
Confidence            99999999999999999999999999999999999999999999999899999999999888777777666666543221


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                      ...+++++.  ...    +....  +    .       +.+        +...+.....++.+++|.++...+..++...
T Consensus       177 ~~~~~~~~~--~~~----~~~~~--~----~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       177 KWLTEEEKY--IVV----GGLLA--E----Q-------QGK--------GPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             ccCCHHHHh--hcc----hhhcc--c----c-------ccc--------cccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            110000000  000    00000  0    0       000        0000111235567788999888888888888


Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH---H
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---L  420 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  420 (487)
                      ....+..+.|.|+++..+.+.... .+.....++.+++.++.+++.||+++|+..................+....   .
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV  309 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Confidence            888888899999988888776555 445566788889999999999999998421100001111111111111111   1


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.+..+....+..++ ....+....+..+..|++.|+++.|+. .....+|..++|.+.|++.|.
T Consensus       310 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~~~~~i~g~l~~~  373 (399)
T TIGR00893       310 NIPYAALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLI-NSLGNLGGIVGPIVIGAIAAT  373 (399)
T ss_pred             hhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHH-HHHHHHhhhhhhHHhhhhccC
Confidence            2233333333333333 335677788888999999999999997 566677889999999999875

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=7.2e-35  Score=278.21  Aligned_cols=322  Identities=14%  Similarity=0.080  Sum_probs=243.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|++.+|+|.++.+.++..+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++|++.+++.|+++|++.
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+....++.|++|+|+|++++++...+.++|..++|++++.+.+.+|||+.|++.+++.++..+......||.++  
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~--  200 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG--  200 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc--
Confidence            999999999999999999999999999999999999999999999999999999999987766655444433454210  


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                         ++++.                                               .+..++.+++|.++...+..++...
T Consensus       201 ---~~~~~-----------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        201 ---EPSHQ-----------------------------------------------KQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             ---ccccc-----------------------------------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence               00000                                               0113356778888776665555554


Q ss_pred             hheeeeecc-cceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011369          345 VIGAYSYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (487)
Q Consensus       345 ~~~~~~~~~-p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (487)
                      .......+. |.+.+ ..|.+.... .......++.+++.++.+++.||.+++     .............+++....++
T Consensus       231 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~~~~~l~~~~~~  304 (394)
T PRK10213        231 GQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAVSALVLTLWGSD  304 (394)
T ss_pred             HHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHHHHHHHhhh
Confidence            444445555 55554 467776554 434455677788888888888884332     2233333323333333334445


Q ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .+......++.+++.+...+.....+.+..| +.++.+.++. .....+|..+||.+.|++.|+
T Consensus       305 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        305 KIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQ-VAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            5556666777777777777666666777775 4566777765 556677888999999999875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.1e-35  Score=284.81  Aligned_cols=346  Identities=15%  Similarity=0.097  Sum_probs=234.8

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccc---cCccccchhhhHH---HHHHHHHHHHHHH
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFK---LNNFQDGVLSSAF---MVGLLVASPIFAS  139 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~---~s~~~~~~~~s~~---~~~~~i~~~~~g~  139 (487)
                      .+...+++.+++++|...++..                 .|.+.+|++   .+..+.++..+++   +++..++++++|+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~   85 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFC-----------------SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGR   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888999999998864                 377888885   4455444444444   4455599999999


Q ss_pred             hhhhcCCCeEehhHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHH
Q 011369          140 LAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF  211 (487)
Q Consensus       140 l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~  211 (487)
                      ++||+|||+++.+++++++++++++++++|+.        .++++|+++|++.|..++...++++|++|+++|+++.++.
T Consensus        86 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~  165 (432)
T PRK10406         86 IADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQ  165 (432)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHH
Confidence            99999999999999999999999999999874        5899999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcc
Q 011369          212 YMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  283 (487)
Q Consensus       212 ~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  283 (487)
                      +.+...|.++++.+...+.        ..+|||++|++.+++.++... .....||+++.    ++ +..          
T Consensus       166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~----~~-~~~----------  229 (432)
T PRK10406        166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ----ET-RAL----------  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH----HH-hhh----------
Confidence            9888888888887655443        257999999998777655432 22222332110    00 000          


Q ss_pred             cCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH-HHhhheeeeecccceeeeccc
Q 011369          284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYH  362 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~  362 (487)
                                                    ++    ..++++++++++.+...+...+ ....++.+..|+|.|+++..+
T Consensus       230 ------------------------------~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g  275 (432)
T PRK10406        230 ------------------------------KE----AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG  275 (432)
T ss_pred             ------------------------------cc----cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                          00    0124455667777665554443 355566778899999987777


Q ss_pred             ccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH-HHH-HH--HHHHHHHHHHHHHHHHH
Q 011369          363 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAF-CL--SSLYGFLALFTVGELLV  437 (487)
Q Consensus       363 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~  437 (487)
                      .+..+. ....+..+...++.++.|+++||++||     +.+.+...+..+... ... ..  .+....+.+..+..+..
T Consensus       276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (432)
T PRK10406        276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-----TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIV  350 (432)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            775444 334455566677888889999999998     444444333222221 111 11  12222222222222222


Q ss_pred             hccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          438 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      +...+....+..|.+|++.|+++.|+.+...+.+.+...|.+.+++
T Consensus       351 ~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        351 SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            2223334556778899999999999986665654334577766644

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=6.5e-35  Score=281.73  Aligned_cols=376  Identities=13%  Similarity=0.077  Sum_probs=264.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      .+++.+..+++.++..+++...++..                 .|.+++++|+++.+.+++.+++.++..+++++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~   71 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALV-----------------LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWG   71 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888889999999999888764                 4889999999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      ||+|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus        72 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~  151 (405)
T TIGR00891        72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV  151 (405)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhh
Q 011369          222 GYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA  299 (487)
Q Consensus       222 g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (487)
                      ++.+++.+.+..+  ||+.|++.+++.++.. +.....||+++...++++.+..                  .+...+..
T Consensus       152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  212 (405)
T TIGR00891       152 AAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALV------------------RTMVDILY  212 (405)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhh------------------hhHHHHHh
Confidence            9999999887766  9999998765544433 3333345532211000000000                  00000000


Q ss_pred             hhhhhccccccchhhhhhhhhHHHHhhh-c-chhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369          300 SERSIKSIGESRFLNQLSQFSQDTKVLL-Q-EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (487)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (487)
                      .....    .+   ...++.....++.. + .+.+...................+.|.|+.+..+.+..+. .+.....+
T Consensus       213 ~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  285 (405)
T TIGR00891       213 GGEHR----IA---NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNI  285 (405)
T ss_pred             ccchh----hh---hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            00000    00   00000001111111 1 1112223333333344444566778888887778776555 45556678


Q ss_pred             ccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCC
Q 011369          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (487)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (487)
                      +.+++.++.+++.||+++|     +.+..+..+.....+.... ..+.+...+..++.+++.....+.....+.+..|++
T Consensus       286 ~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
T TIGR00891       286 GAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD  360 (405)
T ss_pred             HHHHHHHHHHHHHHHhCch-----hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc
Confidence            8899999999999999998     5555554444332222222 233333444445555555566666777888899999


Q ss_pred             chhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .|+++.|+. .....+|..++|.+.|++.|+
T Consensus       361 ~~~~~~g~~-~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       361 QRAAGLGFT-YQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             hhHHHhhHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            999999997 556667888999999999885

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2.3e-35  Score=282.22  Aligned_cols=366  Identities=15%  Similarity=0.148  Sum_probs=264.6

Q ss_pred             HHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehh
Q 011369           73 INMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV  152 (487)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  152 (487)
                      .++..++++..++..                 +|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++++
T Consensus         3 ~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881         3 GYAAYYLVRKNFALA-----------------MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             hhhHHHHhHHhhhhh-----------------hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            345566666666643                 488999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH-HHHHhhcc
Q 011369          153 GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGS  231 (487)
Q Consensus       153 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~  231 (487)
                      +.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 57777777


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccc
Q 011369          232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR  311 (487)
Q Consensus       232 ~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (487)
                      ..+||+.|++.+++.++..++.++..||.++....++.++...              ++..+..++     .+       
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-----~~-------  199 (379)
T TIGR00881       146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN--------------EEPDGDAEK-----KE-------  199 (379)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc--------------ccccccccc-----cc-------
Confidence            8899999999998887777776666666433211111000000              000000000     00       


Q ss_pred             hhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHh
Q 011369          312 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD  390 (487)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d  390 (487)
                        +.........++++++|.++...+..+........+..+.|.|+++..+.+..+. .......++.+++.++.+++.|
T Consensus       200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  277 (379)
T TIGR00881       200 --EELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD  277 (379)
T ss_pred             --ccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence              0000111234566788888888888777777777788889999988778876555 4555667888999999999999


Q ss_pred             hhcccchhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHH
Q 011369          391 QMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  468 (487)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~  468 (487)
                      |..++++.  ...................  ..+.+......++.+.+.....+.......+..|++.|+++.|+. ...
T Consensus       278 r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~  354 (379)
T TIGR00881       278 KLFNGRRG--PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV-GFF  354 (379)
T ss_pred             HHcCCcch--HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHH-HHh
Confidence            87544321  1111111111112111111  223333334444444444444444455677888899999999997 666


Q ss_pred             HhhcCCCccceeeeeecc
Q 011369          469 HIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       469 ~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+|..++|.+.|.+.|+
T Consensus       355 ~~~g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       355 AYLGGILAGLPLGYLADG  372 (379)
T ss_pred             hhhhhhhhhhhHHHHHHh
Confidence            777888999999998875

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.5e-34  Score=281.81  Aligned_cols=392  Identities=14%  Similarity=0.120  Sum_probs=272.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCC-C----CcccCCCccccccccCccccchhhhHHHHHHHHHHHH
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDD-K----GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI  136 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~----~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~  136 (487)
                      .++.+..++++++..++.|+.+++............. +    .-.|.......|++++..+.|++.+.+.+++.+++++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~   95 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP   95 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence            3455777778888899999999987653221100000 0    0001111222388999999999999999999999999


Q ss_pred             HHHhhhhcCCCeEehhHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhh
Q 011369          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (487)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (487)
                      .|+++||+|||+++.++.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus        96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894        96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887554  56889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccc
Q 011369          215 IPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSE  293 (487)
Q Consensus       215 ~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (487)
                      ..+|..+++++++.+.+.+ +||++|++.++++++..++.+++.+++++...+.+ +++.  +                 
T Consensus       176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~--~-----------------  235 (465)
T TIGR00894       176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-KFEK--K-----------------  235 (465)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCC-HHHH--H-----------------
Confidence            9999999999999999884 99999999999888777766666655432211100 0000  0                 


Q ss_pred             cchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeec
Q 011369          294 DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (487)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (487)
                      ..++...+++. .       .   +...+++++++++.+|...+..+......+.+.+|+|.|+++..+.+.... ...+
T Consensus       236 ~i~~~~~~~~~-~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~  304 (465)
T TIGR00894       236 YINSSLQGQKG-S-------T---RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSS  304 (465)
T ss_pred             HHHhhcccccC-C-------C---CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHH
Confidence            00000000000 0       0   001235678899999999999888888888889999999998888886665 5556


Q ss_pred             eeecccchhhhhhhhhHhhhcccchhhhH----HHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCeeE
Q 011369          373 VTIVCGIVGTISGGFILDQMGATISNAFK----LLSAATFLG-AISCLTAFC-LSSLYGFLALFTVGELLVFATQAPVNY  446 (487)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (487)
                      +..++..++.+++|+++||+++|+...+.    .......+. .+..+.... ..+....++++++.+.+.+...+....
T Consensus       305 ~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  384 (465)
T TIGR00894       305 LPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLI  384 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhh
Confidence            67788899999999999998765332211    111111111 111111111 122333344444544444444443333


Q ss_pred             EEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          447 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       447 ~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ...+. .++.+|.+.|+. ...+.+|.+++|.+.|++.|.
T Consensus       385 ~~~~~-~~~~~g~~~g~~-~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       385 NSLDL-APRFLGFIKGIT-GLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             chhhc-ChhHHHHHHHHH-HHHHHHHHHHHHHhhheeeCC
Confidence            33344 456899999997 556667888999999988763

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.1e-34  Score=277.28  Aligned_cols=329  Identities=12%  Similarity=0.010  Sum_probs=248.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|.+.+|+|+++.+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.++++|++.|++.
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  105 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV  105 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..+||+.|++.+++.++..+..++..++++++.
T Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  184 (377)
T TIGR00890       106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL  184 (377)
T ss_pred             HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc
Confidence            9988888889999997 589999999999999999887777777777789999999999988887777666654422110


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                      .+++  ++.                      +                 +    .....++.++++.++...+..+....
T Consensus       185 ~~~~--~~~----------------------~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (377)
T TIGR00890       185 IKTN--IEV----------------------S-----------------V----KDYTVWEMLRTPQFWVLYLSFFLNAV  219 (377)
T ss_pred             cccC--ccc----------------------c-----------------h----hhhhHHHHHcCccHHHHHHHHHHHhH
Confidence            0000  000                      0                 0    00123455677777776666555544


Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-  422 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  422 (487)
                      .......+.+.|.++ .+.+.... .+..+..++.++++++.|++.||++||     +.+..+..+..+..+.....++ 
T Consensus       220 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~  293 (377)
T TIGR00890       220 SGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMAAMLFIPML  293 (377)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHHHHcccc
Confidence            444444455656554 45554443 445667788899999999999999988     5666655555555544433332 


Q ss_pred             -HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          423 -LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       423 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                       ....+...++.+++.+...+....+..+.+|+++|+++.|+. .....+|..++|.+.|.+.|+
T Consensus       294 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       294 NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFL-YTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence             222333345556666666555666777888899999999997 566777889999999988764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.5e-34  Score=275.22  Aligned_cols=334  Identities=16%  Similarity=0.098  Sum_probs=260.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch-----hHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----~~~~l~~~r~l~  180 (487)
                      |.+..|++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.++++     |++.+++.|+++
T Consensus        23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (365)
T TIGR00900        23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL  102 (365)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            667888999999999999999999999999999999999999999999999999988888887     999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      |++.+...+...+++.|++|+++|++++++.+.+..+|.++++++++.+.+..+||+.|++.++..++..+..++..+++
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (365)
T TIGR00900       103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPE  182 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998877665554444332221


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      .++   +++ ++..                  +                    +..++..+.++.++++|.++...+..+
T Consensus       183 ~~~---~~~-~~~~------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T TIGR00900       183 LAA---SEI-QALS------------------N--------------------AVLRDTREGIKFVLKNPLLRTLLLLAL  220 (365)
T ss_pred             CCC---ccc-cccc------------------h--------------------hHHHHHHhHHHHHHcCcHHHHHHHHHH
Confidence            100   000 0000                  0                    000111234556678888887777766


Q ss_pred             HHHhhheeee-ecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (487)
Q Consensus       341 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (487)
                      .......... .+.|.+.++..+.+..+. .+.....++.+++.++.+++.||.+++     +.+..+..+..+......
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       221 LFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHHH
Confidence            6666555454 678888887677776555 445566778889999999999999887     555555554544444444


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          419 CLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       419 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      ... +.+...+..++.+++.+...+....+..+.+|++.|+++.|+. .....++..++|.+.|++.|++
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       296 LTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ-FSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence            444 3566667777888888877787888889999999999999997 5566678889999999998863

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=7.5e-35  Score=286.25  Aligned_cols=361  Identities=11%  Similarity=0.041  Sum_probs=240.7

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccc-cchh-----hhHHHHHHHHHHHHH
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVL-----SSAFMVGLLVASPIF  137 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~-~~~~-----~s~~~~~~~i~~~~~  137 (487)
                      ++++...+++.+++++|...++..                 .|.+.++|+.+.++ .+++     .++.++++.++++++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~   77 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFV-----------------AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFF   77 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777788999999999998764                 37788888654433 2332     477789999999999


Q ss_pred             HHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHH--------HHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHH
Q 011369          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS  209 (487)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~  209 (487)
                      |+++||+|||+++.+++++++++++++++++|+++        ++++|+++|++.|..++....++.|++|+++||++.+
T Consensus        78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642         78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence            99999999999999999999999999999999875        8999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccC
Q 011369          210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  281 (487)
Q Consensus       210 ~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  281 (487)
                      +...+..+|..+|+.+...+.        ..+|||++|++.+++.++ .++.....||+++.....++.++    ..   
T Consensus       158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~----~~---  229 (490)
T PRK10642        158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ----GD---  229 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh----hc---
Confidence            999888888888886654432        357999999998765554 33334445664332110000000    00   


Q ss_pred             cccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhc-c-hhHHHHHHHHHHHHhhheeeeecccceeee
Q 011369          282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-E-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  359 (487)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  359 (487)
                           .     +...      +.+        +      .+++++++ + +.+.......+.....++.+..|+|.|+++
T Consensus       230 -----~-----~~~~------~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  279 (490)
T PRK10642        230 -----R-----EGLQ------DGP--------K------VSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH  279 (490)
T ss_pred             -----c-----cccc------ccc--------c------CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0     0000      000        0      01122222 1 222222223344455666777899999987


Q ss_pred             cccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH
Q 011369          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AF--CLSSLYGFLALFTVGEL  435 (487)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  435 (487)
                      ..+.+.... .......++.+++.++.|+++||+|||     +.+..+.+...+..+. ..  ...+....++..++.++
T Consensus       280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  354 (490)
T PRK10642        280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAV  354 (490)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            777765444 333445577788889999999999998     5555444332222211 11  11223333333444444


Q ss_pred             HHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          436 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      +.+...+....+..+.+|++.|+++.|+.+..... ++.++|.+.|++.+
T Consensus       355 ~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~  403 (490)
T PRK10642        355 ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVE  403 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            44444444455556788999999999986455444 45678888887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=5.8e-35  Score=288.64  Aligned_cols=395  Identities=14%  Similarity=0.138  Sum_probs=283.9

Q ss_pred             hhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc
Q 011369           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (487)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~  144 (487)
                      +++..++++.++..+|....+..                 +|.+.+++|.+..+.+|+.+.+.++..++.++.|+++||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~   64 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVA-----------------IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF   64 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            35667777888888888877653                 4999999999999999999999999999999999999999


Q ss_pred             CCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHH
Q 011369          145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  224 (487)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  224 (487)
                      |||++++++.++..++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.
T Consensus        65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhc-------ccccCcccCCCcccccccchh
Q 011369          225 YGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA-------SVSEGSEASNLNDHVSEDISD  297 (487)
Q Consensus       225 ~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  297 (487)
                      +++.+.++++||+.|++.+++.++..++.++..|++.+...  ++.+.....       .........+..++.......
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEIL  222 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence            99999999999999999998887777766666665322111  100000000       000000000000000000000


Q ss_pred             hh-hhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceee
Q 011369          298 QA-SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI  375 (487)
Q Consensus       298 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~  375 (487)
                      .. ...............+.++... ..+++++|.++...+..+......+....++|.|+++..+.++.+. .......
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~  301 (485)
T TIGR00711       223 ILSITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG  301 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            00 0000000000000000000111 1246788888888777777777777778889999998888887666 4445566


Q ss_pred             cccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q 011369          376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CL---SSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (487)
Q Consensus       376 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (487)
                      ++.+++.++.|++.||+++|     +.+..+..+..+...+.. ..   .+.+......++.+++.+..+++......+.
T Consensus       302 ~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~  376 (485)
T TIGR00711       302 LAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSG  376 (485)
T ss_pred             HHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88889999999999999998     666666655555554443 11   1234445556667777776666666666788


Q ss_pred             cCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      +|+++++++.|+. .....+|..+|+.+.|.+.+
T Consensus       377 ~~~~~~g~~~~~~-~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       377 LPPHKIARGSSLS-NFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             CCHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            8889999999997 55667788899998887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.5e-34  Score=279.17  Aligned_cols=361  Identities=15%  Similarity=0.115  Sum_probs=251.6

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++.+..+.+.++..+++.......                 +|.+++|+|+++.+.+++.+++.+++.++++++|+++||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr   79 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYI-----------------MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK   79 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778888888888877643                 488999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      +|||++++++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++
T Consensus        80 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~  159 (426)
T PRK12307         80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA  159 (426)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhh
Q 011369          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (487)
Q Consensus       224 ~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (487)
                      .+.+.+.+..+||+.|++..+..++ .+......||+.+..    + ++.  +.       ..   +             
T Consensus       160 ~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~----~-~~~--~~-------~~---~-------------  208 (426)
T PRK12307        160 YFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWE----E-AKL--SG-------KG---K-------------  208 (426)
T ss_pred             HHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHH----H-hhh--hc-------cc---c-------------
Confidence            9999999989999999986443222 211111123211100    0 000  00       00   0             


Q ss_pred             hccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH---HHHhhheeeeecccceeeecccccccce-eeeceeecccc
Q 011369          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI---AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  379 (487)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (487)
                      ...       ....+.....+++++++.++.......   ......+.+..++|.|+++ .+.+.... ....+..++.+
T Consensus       209 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  280 (426)
T PRK12307        209 HSQ-------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTV  280 (426)
T ss_pred             ccc-------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence            000       000001123455667766654333222   2222223345678888876 46665444 44455667889


Q ss_pred             hhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCCeeEEEEeecCCCch
Q 011369          380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV--FATQAPVNYVCLHSVKPSLR  457 (487)
Q Consensus       380 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r  457 (487)
                      ++.++.+++.||++||     +....+.++..+..+...............++.+.+.  .+..+.....+.+.+|++.|
T Consensus       281 ~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  355 (426)
T PRK12307        281 LGNIVWGLCADRIGLK-----KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR  355 (426)
T ss_pred             HHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence            9999999999999988     5555555554444433332222111112222222221  12223344566788988999


Q ss_pred             hHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          458 ALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       458 ~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +++.|+. .....+|+.++|.+.|++.|+
T Consensus       356 g~~~g~~-~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        356 GLGTGLI-YNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             hhhhhHH-HHHHhHHHHHHHHHHHHHHHc
Confidence            9999997 556666888999999988775

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.8e-34  Score=278.09  Aligned_cols=357  Identities=11%  Similarity=0.067  Sum_probs=243.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCC-cccccc--ccCccccchhh-----hHHHHHHHHH
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGS-GIQGDF--KLNNFQDGVLS-----SAFMVGLLVA  133 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~-~i~~~~--~~s~~~~~~~~-----s~~~~~~~i~  133 (487)
                      ++++.+...++..+.+++|...++...                 | .+.+++  +.++. .+++.     ++.+++..++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g   80 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITA-----------------ALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLG   80 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhH
Confidence            345677778889999999999887541                 3 244555  56655 45554     3455667899


Q ss_pred             HHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchh
Q 011369          134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT  205 (487)
Q Consensus       134 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~  205 (487)
                      +++.|+++||+|||++++++.++++++++++++++|++        .++++|+++|++.|..++....++.|++|+++|+
T Consensus        81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg  160 (438)
T PRK09952         81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA  160 (438)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999999999999999999987        5889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcc
Q 011369          206 AWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  277 (487)
Q Consensus       206 ~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  277 (487)
                      +..+..+.+..+|.+++..+...+.        ..+|||++|++.+++.++. +......||+++....+++.++     
T Consensus       161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~-----  234 (438)
T PRK09952        161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAA-----  234 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhccc-----
Confidence            9999999999999999887766554        3579999999887765432 2222223442211000000000     


Q ss_pred             cccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHH-HHHHHHhhheeeeecccce
Q 011369          278 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKA  356 (487)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~  356 (487)
                                   .+                     ++ .   ...+.++++++.+.... ..+......+....|.|.|
T Consensus       235 -------------~~---------------------~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  276 (438)
T PRK09952        235 -------------AK---------------------KR-I---PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNY  276 (438)
T ss_pred             -------------cc---------------------cc-C---CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         00                     00 0   00112334555544433 3444455566667788888


Q ss_pred             eeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHH
Q 011369          357 GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LS-SLYGFLALFT  431 (487)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~  431 (487)
                      +++..+.+.... ....+..+..+++.++.|+++||++||     +.+..+.++..+..+....   .. ..+..+...+
T Consensus       277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T PRK09952        277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM  351 (438)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            887777765432 223344566677888999999999998     5555444443333222211   11 2223333444


Q ss_pred             HHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          432 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      +.+++.+...+....+..|.+|++.|+++.|+.+.....+|+.++|.+.|++.|
T Consensus       352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~  405 (438)
T PRK09952        352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT  405 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455665655666677788889999999999997555566788899999998866

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.7e-34  Score=279.80  Aligned_cols=375  Identities=13%  Similarity=0.051  Sum_probs=250.5

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      |.++..+++.....+.++..++..                 +|.+.++ |++..+.+++.+.+.+++.++++++|+++||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr   89 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR   89 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            445555666667777776665542                 3788888 9999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhh
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (487)
                      +|||++++++.++.+++.+++++++    +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.
T Consensus        90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273         90 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999888763    788999999999999998888888899999999999999999999999886


Q ss_pred             h-hHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhh
Q 011369          220 A-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (487)
Q Consensus       220 ~-~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (487)
                      . .+++++..+....+||+.|++.+++.++..++.+++.||.+++...+++++..  .+.    +      +   ..+  
T Consensus       170 ~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~----~------~---~~~--  232 (452)
T PRK11273        170 GLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDY----P------D---DYN--  232 (452)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hcc----c------c---ccc--
Confidence            4 45555433433458999999999888777777766666644321111100000  000    0      0   000  


Q ss_pred             hhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecc
Q 011369          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (487)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~  377 (487)
                        ..+.+.       ...++..  .+.+++++.+|...+..++.....+....|+|.|+++..+++.... ....+..++
T Consensus       233 --~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~  301 (452)
T PRK11273        233 --EKHEQE-------LTAKQIF--MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  301 (452)
T ss_pred             --cccCCC-------ccHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence              000000       0001110  1246788999988888777777777788899999998777775444 344456677


Q ss_pred             cchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCC
Q 011369          378 GIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (487)
Q Consensus       378 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (487)
                      .+++.++.|+++||++++++.  ........+..+..+.....  .+.+..++..++.+.+.............+..|++
T Consensus       302 ~~~g~~~~G~l~dr~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  379 (452)
T PRK11273        302 GIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK  379 (452)
T ss_pred             HHHHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence            888999999999999543221  11111112222222211111  12222233333333332222222223445788889


Q ss_pred             chhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .||++.|+.+...+..+.+.+|.+.|++.|+
T Consensus       380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~  410 (452)
T PRK11273        380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  410 (452)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999999975544554455689999988775

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.2e-34  Score=273.24  Aligned_cols=322  Identities=12%  Similarity=0.003  Sum_probs=242.0

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|+
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi  109 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV  109 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      +.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++. +||+.+.+.++..++..+..++..++.+
T Consensus       110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T PRK09705        110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV  188 (393)
T ss_pred             HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999997 78999999999999999999999999988875 8999988776665443332222211110


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                           +++++..                                               ...++.+++++.+...+..++
T Consensus       189 -----~~~~~~~-----------------------------------------------~~~~~~l~~~~~~~l~~~~~~  216 (393)
T PRK09705        189 -----ASSHKTT-----------------------------------------------TTPVRVVFTPRAWTLGVYFGL  216 (393)
T ss_pred             -----ccccCCC-----------------------------------------------cCCcccccCHhHHHHHHHHHH
Confidence                 0000000                                               001123456666666666666


Q ss_pred             HHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011369          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (487)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (487)
                      ....+.....|.|.++++ .+.+.... ....+..++.++++++.+++.||+++|     +....+..+..+........
T Consensus       217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~~~~~~~~  290 (393)
T PRK09705        217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVGFCGFIWL  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHHc
Confidence            666777788899999987 67776655 555677788999999999999999988     55555554444443333222


Q ss_pred             H-HHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-CCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          421 S-SLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       421 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      + +....  ...+.+++.+...+.......+..+ ++.+++..|+. .....++..++|.+.|++.|+
T Consensus       291 ~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~gp~~~G~l~~~  355 (393)
T PRK09705        291 PLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFM-QGIGFIIAGLAPWFSGVLRSI  355 (393)
T ss_pred             cchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            2 22222  2234455555555555545556665 47889999997 455566777899999999885

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.1e-34  Score=278.09  Aligned_cols=354  Identities=14%  Similarity=0.098  Sum_probs=240.0

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhh-hHHH-----HHHHHHHHH
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLS-SAFM-----VGLLVASPI  136 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~-s~~~-----~~~~i~~~~  136 (487)
                      +++....++++.+++++|+..++..                 .|.+.+|++.++.+.+.+. +...     ++..+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   75 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFY-----------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIV   75 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3457788889999999999999864                 4899999999888765443 3322     223468999


Q ss_pred             HHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHH
Q 011369          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (487)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~  208 (487)
                      .|+++||+|||++++.+.+++++++++++++++++        .++++|+++|++.+...+....+++|++|+++|++++
T Consensus        76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            99999999999999999999999999999999987        4689999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhccccc
Q 011369          209 SMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  280 (487)
Q Consensus       209 ~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  280 (487)
                      ++...+.++|..+++.+++.+.        +.+|||++|++..+.. +.........||.         ++....+.+  
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~---------~~~~~~~~~--  223 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEET---------EEFLARKHR--  223 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCC---------HHHHHhhhc--
Confidence            9999988888888887777652        4689999999864432 1111111111110         000000000  


Q ss_pred             CcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHH-HHHHHHHHhhheeeeecccceeee
Q 011369          281 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYN  359 (487)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~  359 (487)
                                                       ...+   +.++...+++..+.. .+..+......+.+..|.|.|+++
T Consensus       224 ---------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  267 (434)
T PRK15075        224 ---------------------------------PSMR---EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKT  267 (434)
T ss_pred             ---------------------------------cccc---cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                             0000   011222233333332 233334455566678889999988


Q ss_pred             cccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH-HH-HHHH--HHHHHHHHHHHHH
Q 011369          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA-FCLS--SLYGFLALFTVGE  434 (487)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~  434 (487)
                      ..|.+..+. ....+..++++++.++.|+++||++||     +.......+.....+ .. ....  +.........+.+
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (434)
T PRK15075        268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLS  342 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            778876554 444556677889999999999999998     444444333322211 11 1111  1222222223334


Q ss_pred             HHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.+...+....+..|.+|++.|+++.++.+.....+++.++|.+.|++.|+
T Consensus       343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            4444444444556778899999999999975556665567899999988775

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.3e-34  Score=274.22  Aligned_cols=327  Identities=21%  Similarity=0.295  Sum_probs=246.7

Q ss_pred             C-ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 S-GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      | .+.+++|.++.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++..+++|++.++++|+++|++.
T Consensus        20 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   99 (352)
T PF07690_consen   20 PLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGS   99 (352)
T ss_dssp             H-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccc
Confidence            6 789999999999999999999999999999999999999999999999999999777777788889999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+....++.|++|+++|++++++.....++|.++++.+++.+.+..+||+.|++.+++.++..++..++.++++++.
T Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~  179 (352)
T PF07690_consen  100 GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPR  179 (352)
T ss_dssp             HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTT
T ss_pred             ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998888775545554433222


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                      .++++.++..                                       +..++..+.++.+.+++.+|......+....
T Consensus       180 ~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (352)
T PF07690_consen  180 ERESPKESES---------------------------------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFF  220 (352)
T ss_dssp             T--SSTTTT-----------------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHH
T ss_pred             cccccccccc---------------------------------------ccccccccccccccccchhhhhhhhhhHHHH
Confidence            2211111100                                       0000000124455566666644455555555


Q ss_pred             hheeeeecccceeeeccccc-ccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH---HHHH
Q 011369          345 VIGAYSYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFC  419 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  419 (487)
                      .......+.|.|+++.++.+ .... .+..+..+.++++.++.+++.||+++++     ..........+..+   ....
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  295 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----RLLIAILLLILGALGLLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            66668888999988888888 4444 4456667778888999999999999863     33222222222222   2223


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcc
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                      .++....+...++.+++.+...+.......+..|++++|++.|+. .....+|..+||
T Consensus       296 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~igP  352 (352)
T PF07690_consen  296 SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLF-NSIGSLGGIIGP  352 (352)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHHHHCC
Confidence            334455556677788888888888899999999999999999997 566666766665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.9e-33  Score=271.05  Aligned_cols=376  Identities=13%  Similarity=0.061  Sum_probs=266.1

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      |.++..+++.....+.+...++..                 +|++.+++|.+.++.+++.+.+.++..++.+++|+++||
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr   80 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVF-----------------FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR   80 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhh-----------------HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            446666666555555554444432                 388999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchhHHHHHH-HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhH
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~-~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (487)
                      +|||++++.+.++.++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++
T Consensus        81 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~  159 (455)
T TIGR00892        81 FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTL  159 (455)
T ss_pred             cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999875 5799999999877778888999996 799999999999999999999


Q ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhh
Q 011369          223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER  302 (487)
Q Consensus       223 ~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (487)
                      |++++.+.+.+|||++|++.+++.++..+..+++.|+.......+++.+.     .   .+.... .+   +....    
T Consensus       160 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~-~~---~~~~~----  223 (455)
T TIGR00892       160 APLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE-----G---LPPDGS-TK---KLSKK----  223 (455)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc-----c---CCCCCc-cc---ccccc----
Confidence            99999999999999999999998776665555554432110000000000     0   000000 00   00000    


Q ss_pred             hhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchh
Q 011369          303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVG  381 (487)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~  381 (487)
                        .      ..+...+ ..++ +++++|.++...+..++...+......++|.|+++ .+.+.... .+.++..++.+++
T Consensus       224 --~------~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~  292 (455)
T TIGR00892       224 --S------TAEKINR-FLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFA  292 (455)
T ss_pred             --c------hhhhhhh-hcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence              0      0000000 1112 36788888888887777777777777888988876 57775555 4555667778888


Q ss_pred             hhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHH
Q 011369          382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM  461 (487)
Q Consensus       382 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  461 (487)
                      ++..+++.||.+.+.++. ..+..+........++....++.+.+++..++.+++.+...+.....+.+.+|+++++++.
T Consensus       293 ~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~  371 (455)
T TIGR00892       293 RPSCGLIAGLKWIRPHVQ-YLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAV  371 (455)
T ss_pred             HHHHHHHhcccccCHHHH-HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHH
Confidence            899999999743221110 2222222222233333333455666666677777777777777778888889999999999


Q ss_pred             HHHHHHHHhhcCCCccceeeeeecc
Q 011369          462 AISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       462 g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      |+. .....+|.++||.++|.+.|.
T Consensus       372 g~~-~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       372 GLV-TIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             hHH-HHHHHHHHHccccceeeeehh
Confidence            997 666777999999999999874

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=3.6e-34  Score=275.90  Aligned_cols=381  Identities=17%  Similarity=0.220  Sum_probs=267.3

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++.+..+++..+..+++....+..                 .|.+.+++|.++.+.+++.+.+.++..++.++.|+++||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~   78 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFA-----------------APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR   78 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            445555666666666666655532                 388999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      +|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++
T Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  158 (398)
T TIGR00895        79 IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGG  158 (398)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhh
Q 011369          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (487)
Q Consensus       224 ~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (487)
                      .+++.+.+..+||+.|++.+++.++..++.++..||+++...++++++.....+.   .......++ .+...    +++
T Consensus       159 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~----~~~  230 (398)
T TIGR00895       159 FLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNA---IAPQMQAEA-QSALP----EQK  230 (398)
T ss_pred             HHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHH---HHHhccccc-ccccc----ccc
Confidence            9999999999999999999877776666666666765432111110000000000   000000000 00000    000


Q ss_pred             hccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhh
Q 011369          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (487)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (487)
                      .+    .   +..++..+..++..+.+..+...+..++..........+.|.+. +..+.+.... ....+..++.+++.
T Consensus       231 ~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  302 (398)
T TIGR00895       231 AT----Q---GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGS  302 (398)
T ss_pred             cc----c---chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            00    0   00111111111112233344444444455555556667778444 4466665444 45556678889999


Q ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHH
Q 011369          383 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA  462 (487)
Q Consensus       383 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g  462 (487)
                      ++.+++.||+++|     +.............++.....+.+..+...++.+++.+...+....+..+.+|++.|+++.|
T Consensus       303 ~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  377 (398)
T TIGR00895       303 IIFGWLADRLGPR-----VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVG  377 (398)
T ss_pred             HHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            9999999999987     34433333333333333334455556667777888888888888888999999999999999


Q ss_pred             HHHHHHHhhcCCCccceeeee
Q 011369          463 ISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       463 ~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      +. .....+|.++||.+.|++
T Consensus       378 ~~-~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       378 WA-IGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HH-HHHHHHHHHHHHHhHHhc
Confidence            97 566777889999999876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=3e-33  Score=268.20  Aligned_cols=328  Identities=16%  Similarity=0.159  Sum_probs=250.1

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+|.+.+|+|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|+
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  105 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF  105 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      +.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.+++.++..+..++..||.++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999998999999999988877777666666555321


Q ss_pred             CCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (487)
                      ...+    +.                                           .++..+.+++.+++|.++...+.....
T Consensus       186 ~~~~----~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (385)
T TIGR00710       186 YEAR----IQ-------------------------------------------ISTYFETFLLLLKSKMFWGYALIYGAS  218 (385)
T ss_pred             Cccc----CC-------------------------------------------HHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            1100    00                                           000113455667888888777766666


Q ss_pred             Hhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-  420 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  420 (487)
                      .........+.|.++++..+.++... .+.....++.+++.++.+++.||+++|     +.+..+..+..+..++.... 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  293 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRMGLILFAVSAVLLEITA  293 (385)
T ss_pred             HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            66666667778888887778776555 444556678889999999999999988     44444444333333222221 


Q ss_pred             ----HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          421 ----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       421 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                          ......+...++.+++.+...+.......+..| +.++++.++.+......|.+.+|.+ |.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~-~~~~  359 (385)
T TIGR00710       294 ILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV-SLIH  359 (385)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence                122333444555666666666666666666664 6789999997666666676666654 4443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=100.00  E-value=2.9e-32  Score=272.11  Aligned_cols=359  Identities=20%  Similarity=0.308  Sum_probs=266.2

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch----------------
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----------------  168 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----------------  168 (487)
                      ++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++++++++++++.+                
T Consensus        56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~  135 (633)
T TIGR00805        56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG  135 (633)
T ss_pred             chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence            5899999999999999999999999999999999999999999999999999999999988763                


Q ss_pred             -----------------------------------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHh
Q 011369          169 -----------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM  213 (487)
Q Consensus       169 -----------------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~  213 (487)
                                                         .+..++++|+++|+|.+..++...+++.|++|+++|++++++++.
T Consensus       136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~  215 (633)
T TIGR00805       136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES  215 (633)
T ss_pred             cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence                                               256778999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHhhcccc----------------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccc
Q 011369          214 CIPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  271 (487)
Q Consensus       214 ~~~~G~~~g~~~~~~l~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  271 (487)
                      +..+|..+|+++++.+.+.+                      +||..|++.+++.++.++..+ ..|+..+.....++.+
T Consensus       216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~~~~~~~  294 (633)
T TIGR00805       216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEGKRVNVD  294 (633)
T ss_pred             HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcccccchh
Confidence            99999999999999877532                      278889999888877766544 4454332211100000


Q ss_pred             chhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeee
Q 011369          272 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  351 (487)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (487)
                      ....+..    ..  .  +             .  ..+.......++.++.++++++||.++...+..++.....+++.+
T Consensus       295 ~~~~~~~----~~--~--~-------------~--~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~  351 (633)
T TIGR00805       295 VHETEKL----EK--S--E-------------D--KSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYIT  351 (633)
T ss_pred             hhhhhcc----cc--c--c-------------c--ccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000    00  0  0             0  000000012334556788899999999999999999999999999


Q ss_pred             cccceeeecccccccce-eeeceeec-ccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHH------------
Q 011369          352 WGPKAGYNIYHMSNADM-MFGGVTIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA------------  417 (487)
Q Consensus       352 ~~p~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  417 (487)
                      |+|.|+++.++.++..+ .+..+..+ +.++|.+++|+++||++.+.+...+..++..++..+.....            
T Consensus       352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ag  431 (633)
T TIGR00805       352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAG  431 (633)
T ss_pred             HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccce
Confidence            99999999999987666 33333343 56789999999999998764322222222222222111100            


Q ss_pred             --------------HHH---------------------------------------------------------------
Q 011369          418 --------------FCL---------------------------------------------------------------  420 (487)
Q Consensus       418 --------------~~~---------------------------------------------------------------  420 (487)
                                    ...                                                               
T Consensus       432 v~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~  511 (633)
T TIGR00805       432 VNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN  511 (633)
T ss_pred             eeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCC
Confidence                          000                                                               


Q ss_pred             ---HH-HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          421 ---SS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       421 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                         .+ ...++++.++..+..+....+.+.++.+.+|+++|+.+.|+.....+.+|.+-+|++.|++.|..
T Consensus       512 ~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       512 PPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence               00 12334445555566667788889999999999999999999989999999999999999999963

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=3.3e-33  Score=272.93  Aligned_cols=332  Identities=13%  Similarity=0.047  Sum_probs=227.9

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|.+.+|+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|++.
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  138 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL  138 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc----c-----ccchHHHHHHHHHHHHHHHHHHhh
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----~-----~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      +... ....+++|++|+++|++++++.....++|..+++.+.+.+.    +     ..|||+.|++.+++.++..++.++
T Consensus       139 ~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        139 ATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8654 45678999999999999999998777777777766554432    1     258999999999988877766665


Q ss_pred             ccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHH
Q 011369          256 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  335 (487)
Q Consensus       256 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (487)
                      +.++.+..     +.++..++                         .+.          +..+..+.+++.++++++|..
T Consensus       218 ~~~~~p~~-----~~~~~~~~-------------------------~~~----------~~~~~~~~~~~~~~~~~~~~~  257 (476)
T PLN00028        218 LGQDLPDG-----NYRELKKS-------------------------GTM----------PKDSFSKVLRYGVTNYRTWIL  257 (476)
T ss_pred             HcCcCCCC-----chhhHHhc-------------------------Ccc----------ccccHHHHHHHHHcCchhHHH
Confidence            54331110     00000000                         000          000011235566788888877


Q ss_pred             HHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhh--hHHHHHHHHHHHH
Q 011369          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA--FKLLSAATFLGAI  412 (487)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~  412 (487)
                      .+.++........+..++|.|+.+..|.+.... .+..+..++++++++++|+++||+++|+..+  +........+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i  337 (476)
T PLN00028        258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGV  337 (476)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence            776665555555567788999887778886655 5556777889999999999999999874221  1222333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccce
Q 011369          413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (487)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~  479 (487)
                      .++.....++.+..+..+++.+++.+...+....+..+ +.++.+|++.|+. .....+|.+++|.+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~-~~~g~lg~~i~~~l  402 (476)
T PLN00028        338 FCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPF-VSRRSLGVISGLT-GAGGNVGAVLTQLL  402 (476)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcc-cChhhchhhhhhh-hccccHHHHHHHHH
Confidence            33333333333334444445555444444444444443 4567899998886 33333344444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.6e-33  Score=267.20  Aligned_cols=322  Identities=15%  Similarity=0.141  Sum_probs=236.2

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|.+++|+|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|+++|++.
T Consensus        26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~  105 (382)
T PRK10091         26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH  105 (382)
T ss_pred             hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+....++.|++|+++|+++++++..+..+|..+++++++.+.+..+||++|++.+++.++..+..++..||.+++ 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~-  184 (382)
T PRK10091        106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE-  184 (382)
T ss_pred             HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-
Confidence            9988988999999999999999999999999999999999999999989999999999988777666665556663210 


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                         + +...                                        +      +.. +.++++..+......++...
T Consensus       185 ---~-~~~~----------------------------------------~------~~~-~~~~~~~~~~~~~~~~~~~~  213 (382)
T PRK10091        185 ---A-KGGL----------------------------------------R------EQF-HFLRSPAPWLIFAATMFGNA  213 (382)
T ss_pred             ---c-ccCH----------------------------------------H------HHH-HHhcChHHHHHHHHHHHHHH
Confidence               0 0000                                        0      011 23455555555444444333


Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHH
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LSS  422 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  422 (487)
                      +......+++.++++..|.++... .+.....++.+++.++.+++.||++++     +....+..+..+..++... .++
T Consensus       214 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~~~~~~~~i~~~~~~~~~~~  288 (382)
T PRK10091        214 GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAAVTDFIIVLALLMLFFFGGM  288 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch-----hHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344556667776677776555 555667788999999999999999988     5555555555544433332 333


Q ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEee-cCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          423 LYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .+...+..++.+.+.....++......+. .+++.++.+.  . .....+|.++||.+.|++.|+
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--G-QIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--H-HHHHHHHHHHHHHHhHHHHHc
Confidence            33334444444444433333333222233 3335555443  3 345667889999999998874

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.6e-33  Score=269.90  Aligned_cols=347  Identities=12%  Similarity=0.050  Sum_probs=257.7

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      +++...+++.++....+...++..                 +|++.+++|+|+++.+++.+.+.+++.++++++|++.||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr   68 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMV-----------------MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI   68 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777777776666643                 489999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      +|||++++.+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|
T Consensus        69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  148 (394)
T PRK03699         69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP  148 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc-cccchHHHHHHHHHHHHHHHHHHhhcc-ccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhh
Q 011369          224 VYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (487)
Q Consensus       224 ~~~~~l~-~~~~wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (487)
                      .+.+.+. +..+||+.|++.+++.++..++.++.. |+       .++++..  +.         .              
T Consensus       149 ~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~--~~---------~--------------  196 (394)
T PRK03699        149 IIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPA-------LGKHAPK--AD---------K--------------  196 (394)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCCcc-------ccccCcc--cc---------C--------------
Confidence            9888765 457999999998887766555443321 11       0000000  00         0              


Q ss_pred             hhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccch
Q 011369          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  380 (487)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (487)
                                  .       ..+. ..++.++...+..++.....+.+..|.|.|+++.++.+..+. .+.+...++..+
T Consensus       197 ------------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i  256 (394)
T PRK03699        197 ------------P-------VAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMV  256 (394)
T ss_pred             ------------c-------cccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHH
Confidence                        0       0000 123455666666666666666778899999988888886655 445566678899


Q ss_pred             hhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHH
Q 011369          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (487)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (487)
                      ++++.+++.||+++|     +.+.....+..+...+....++.+...+..++.+++.+..++.......+.. ++.++..
T Consensus       257 g~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~  330 (394)
T PRK03699        257 GMWIFSFIVRFFDLQ-----RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKL  330 (394)
T ss_pred             HHHHHHHHHHHhchh-----hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHH
Confidence            999999999999998     5555444444444444433444444445556666666655555554444444 3445677


Q ss_pred             HHHHHHHHHhhcCCCccceeeeeecc
Q 011369          461 MAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       461 ~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .+.. .....+|..++|.+.|++.|.
T Consensus       331 ~g~~-~~~~~~g~~i~p~~~G~l~~~  355 (394)
T PRK03699        331 VNFI-LTCGTIGTMLTFVVTSPIVAH  355 (394)
T ss_pred             HHHH-HHhhhHHHHHHHHHHHHHHHH
Confidence            7776 556667889999999988774

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4.1e-33  Score=268.48  Aligned_cols=351  Identities=12%  Similarity=0.071  Sum_probs=260.4

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G  145 (487)
                      +...+.+..+...++...+.                 |.+|.+.+|+|.++.+.++..+.+.+++.+++++.|+++||+|
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g   76 (406)
T PRK15402         14 FPLCLVLFEFATYIANDMIQ-----------------PGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG   76 (406)
T ss_pred             HHHHHHHHHHHHHhhhhhHh-----------------cchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44444555555555555444                 3458899999999999999999999999999999999999999


Q ss_pred             CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHH
Q 011369          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (487)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  225 (487)
                      ||++++++.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|.+++++......+|..++|.+
T Consensus        77 ~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  156 (406)
T PRK15402         77 RRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV  156 (406)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998889999999999999999999999998888999999999


Q ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhc
Q 011369          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  305 (487)
Q Consensus       226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (487)
                      ++.+.++.+||+.|++.+++.++..+..++..||+.++..     ++                                 
T Consensus       157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------------------  198 (406)
T PRK15402        157 GAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG-----EK---------------------------------  198 (406)
T ss_pred             HHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc-----cc---------------------------------
Confidence            9999998999999999988887776665555565321100     00                                 


Q ss_pred             cccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhh
Q 011369          306 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS  384 (487)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  384 (487)
                              ....+..++.+.++++|.++...+..++..........+.|.++++..+.++.+. .......++.+++.++
T Consensus       199 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~  270 (406)
T PRK15402        199 --------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLT  270 (406)
T ss_pred             --------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                    0001112345677888988887776666655555555667888777777776554 2223344567888999


Q ss_pred             hhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhH
Q 011369          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  459 (487)
Q Consensus       385 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  459 (487)
                      .+++.||+++|     +.+..+..+..+........     .+.++.....++.+++.+...+....... ..+++++|+
T Consensus       271 ~g~l~~r~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~  344 (406)
T PRK15402        271 LARLTSRRPLR-----SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGT  344 (406)
T ss_pred             HHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccH
Confidence            99999999987     55555544444333333221     23344455566666666665554433332 234588999


Q ss_pred             HHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          460 SMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       460 ~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+.. ...+..|..+|+.+.|++.+.
T Consensus       345 ~~~~~-~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        345 VSAAM-GMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhcccC
Confidence            99997 666667778899998887764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.2e-32  Score=259.84  Aligned_cols=345  Identities=14%  Similarity=0.048  Sum_probs=258.2

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccc-ccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      .+|.+.+..+...+.+.....++..                 .+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l-----------------~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~   94 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAV-----------------TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMV   94 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777777777777777753                 256655 8999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  216 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  216 (487)
                      ||+|.|+++.++.++.++.+++.+++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....+
T Consensus        95 Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~  173 (462)
T PRK15034         95 PIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN  173 (462)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh
Confidence            99999999999999999999999987     8999999999999998 66889999999999999999999999977777


Q ss_pred             hhhhhHHHHHHhhc------------------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhccc
Q 011369          217 TGVALGYVYGGVVG------------------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  278 (487)
Q Consensus       217 ~G~~~g~~~~~~l~------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  278 (487)
                      +|..++++++..+.                  +..+||.++++..++.++..++.++..++.+.      ++..      
T Consensus       174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------~~~~------  241 (462)
T PRK15034        174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------SRAS------  241 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------cccC------
Confidence            77766655554322                  13458999889888887777777776543111      0000      


Q ss_pred             ccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceee
Q 011369          279 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  358 (487)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  358 (487)
                                                               .++.+.++|+|..|..++.+++....+.++..++|.|.+
T Consensus       242 -----------------------------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~  280 (462)
T PRK15034        242 -----------------------------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAK  280 (462)
T ss_pred             -----------------------------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     134556889999999999999998888888889999988


Q ss_pred             ecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHH
Q 011369          359 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CL-----SSLYGFLALFT  431 (487)
Q Consensus       359 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~  431 (487)
                      +.+.  .... ....+..+.+.+.++++|+++||+|++     +++.++.+...+...... ..     .+.+...+.+.
T Consensus       281 ~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~  353 (462)
T PRK15034        281 TQFP--DVNILRLAFFGPFIGAIARSVGGAISDKFGGV-----RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM  353 (462)
T ss_pred             HHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            7553  2222 112233467788889999999999998     666655554444432211 11     13444444444


Q ss_pred             HHHHHHhccCCCeeEEEEeecCC---------------------CchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          432 VGELLVFATQAPVNYVCLHSVKP---------------------SLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ...++.+......+-++.+.+|+                     ++.|.+.|+. .....+|+.+-|.+.|...+.
T Consensus       354 ~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v-~a~G~~Ggf~~p~~~g~~~~~  428 (462)
T PRK15034        354 GLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFI-SAIGAVGGFFIPQAFGMSLNM  428 (462)
T ss_pred             HHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHH-HHHHHcccchhhHHHHHHHHH
Confidence            45566666777777777777763                     1567788885 677777888888887876654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.2e-32  Score=271.74  Aligned_cols=385  Identities=16%  Similarity=0.094  Sum_probs=248.7

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccc-----cccCccccchhhhHHHHHHHHHHHH
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD-----FKLNNFQDGVLSSAFMVGLLVASPI  136 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~-----~~~s~~~~~~~~s~~~~~~~i~~~~  136 (487)
                      ..++++.++.++.+..++|...++..                 +|.+.++     .+.++.+.+++.+.+.++..+++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~   75 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLV-----------------TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLF   75 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777788889999999888764                 2444432     3455667799999999999999999


Q ss_pred             HHHhhhhcCCCeEehhHHHHHHHHHHHhhcchh------HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHH
Q 011369          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  210 (487)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~  210 (487)
                      +|+++||+|||+++.++++++.++.++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++
T Consensus        76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~  155 (502)
T TIGR00887        76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA  155 (502)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence            999999999999999999999999999998876      78999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHhhcc-----------------------ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 011369          211 FYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (487)
Q Consensus       211 ~~~~~~~G~~~g~~~~~~l~~-----------------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (487)
                      .+....+|.++++.++..+..                       .++||++|.+.++++++..+. .+.+||++++...+
T Consensus       156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~  234 (502)
T TIGR00887       156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADV  234 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHh
Confidence            999999999999988765431                       247999998888776654444 45669988753222


Q ss_pred             Ccc----cchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcc-hhHHHHHHHHHHH
Q 011369          268 ESG----KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-KVYVVNVLGYIAY  342 (487)
Q Consensus       268 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  342 (487)
                      ++.    ++...+....+.  .+..++ .+..++   +.+. .   +   ...++.++... ..+. +.++......+..
T Consensus       235 ~~~~~~a~~~~~~~~~~~~--~~~~~~-~~~~~~---~~~~-~---~---~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  300 (502)
T TIGR00887       235 AKDVEQAASDMSAVLQVKI--EAEPDE-VEKAST---AVEV-P---K---ASWSDFFTHFF-KWRHGKHLLGTAGSWFLL  300 (502)
T ss_pred             CcchHHHHHHHHHHhcccc--ccCccc-ccchhc---cccc-h---h---hhHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            111    111111100000  000000 000000   0000 0   0   01111111110 0011 2222223334444


Q ss_pred             Hhhheeeeecccceeeecccccccce-------------eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHH
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-------------MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (487)
                      ...+++...|.|.++++ .|.+....             ....+..++.+++.+++++++||+|||     +.++.+..+
T Consensus       301 ~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR-----~~l~~~~~~  374 (502)
T TIGR00887       301 DIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-----PIQLMGFFI  374 (502)
T ss_pred             HHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-----hHHHHHHHH
Confidence            55666777888888865 45543211             012233356667888999999999998     666555555


Q ss_pred             HHHHHHHHHHHH-H--HHHHHHHHHHHHHHH-hccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          410 GAISCLTAFCLS-S--LYGFLALFTVGELLV-FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       410 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      ..+++.+..... .  ........++..++. .+..+....+..|.+|++.|+++.|+. ...+.+|++++|.+.|.+.|
T Consensus       375 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~-~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       375 LTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHH-HHHhhhHHHHHHHHhhhhhc
Confidence            444443333221 1  111122222222222 223344456678888889999999997 56677788899999988776

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=6.1e-33  Score=274.16  Aligned_cols=366  Identities=15%  Similarity=0.139  Sum_probs=236.5

Q ss_pred             CCccccccccC--------ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc---hhHHHH
Q 011369          105 GSGIQGDFKLN--------NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSI  173 (487)
Q Consensus       105 l~~i~~~~~~s--------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~l  173 (487)
                      +|.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++.+++.++.+++.++   .+++.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (481)
T TIGR00879        51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML  130 (481)
T ss_pred             hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            47777777776        7899999999999999999999999999999999999999999999998554   456689


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHH---HhhccccchHHHHHHHHHHHHHHH
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFA  250 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~---~~l~~~~~wr~~f~~~~~~~~~~~  250 (487)
                      +++|+++|++.+...+....++.|++|+++|++++++++.+..+|..++++++   ....+..+||+.|++.++..++..
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  210 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF  210 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999   777777899999999666554444


Q ss_pred             HHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhh---
Q 011369          251 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL---  327 (487)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  327 (487)
                       +..++.||.++....+++.++.. +.........+...+..+...........+..       ...+.+.......   
T Consensus       211 -~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  281 (481)
T TIGR00879       211 -LGLFFLPESPRWLVGKGRVEEAR-KSLARLRGTSGEDKELLDELELIDIKRSIEKR-------SVQPSWGSLFSSTRRI  281 (481)
T ss_pred             -HHHhcCCCChHHHHHcCChHHHH-HHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh-------hccccHHHHHhcCchh
Confidence             44445566432211111111100 00000000000000000000000000000000       0000011222222   


Q ss_pred             cchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHH
Q 011369          328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (487)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (487)
                      +.+.++...+..+...........+.|.+.++ .+.+.... ....+..++.+++.++.+++.||++||     +.+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~  355 (481)
T TIGR00879       282 RRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----PLLLIG  355 (481)
T ss_pred             HHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHH
Confidence            23445555555555555555666677776655 56665444 444566678889999999999999998     555555


Q ss_pred             HHHHHHHHHHHHHH----HH------HHHHHHHHHHHHHHHhccC-CCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCC
Q 011369          407 TFLGAISCLTAFCL----SS------LYGFLALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       407 ~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      .++.+++.+.....    .+      ....+....+...+.+... +....+..+..|++.|+++.|+. .....+|.++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~lg~~i  434 (481)
T TIGR00879       356 AAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIA-VAANWLANFI  434 (481)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHH-HHHHHHHHHH
Confidence            55444444333311    11      2222333333334444444 33455557888889999999997 6667778889


Q ss_pred             ccceeeeeecc
Q 011369          476 SSPLVGVLQVC  486 (487)
Q Consensus       476 ~p~~~g~l~~~  486 (487)
                      +|.+.|++.|+
T Consensus       435 ~~~~~~~~~~~  445 (481)
T TIGR00879       435 VGFLFPTMLES  445 (481)
T ss_pred             HHHHHHHHHHh
Confidence            99988877653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.6e-33  Score=262.81  Aligned_cols=361  Identities=19%  Similarity=0.231  Sum_probs=267.5

Q ss_pred             CCCCccccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHH
Q 011369           56 PTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASP  135 (487)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~  135 (487)
                      ++..++...+++..++..++..+.|+..++...+                -.+.+|.+....+.+++.++++++++++.+
T Consensus        36 ~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l----------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~   99 (495)
T KOG2533|consen   36 RKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASL----------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQF   99 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHH----------------cCCccccchhhhhhhhHHHHHHHHHHHHHh
Confidence            3344555667788888889999999999987654                457799999999999999999999999999


Q ss_pred             HHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhh
Q 011369          136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI  215 (487)
Q Consensus       136 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  215 (487)
                      ++|.|.||++..+.+....+++++..++.+..+|++.+++.|+++|+.++..+|....+++.|+.+++|++.++++.+..
T Consensus       100 p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~  179 (495)
T KOG2533|consen  100 PSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASA  179 (495)
T ss_pred             hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhc
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHhh------ccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcc
Q 011369          216 PTGVALGYVYGGVV------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND  289 (487)
Q Consensus       216 ~~G~~~g~~~~~~l------~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (487)
                      ++|.++|.+++..+      ....||||.|++.|+++++..++.++++|+.+...      +...+++            
T Consensus       180 ~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~------~fl~~~e------------  241 (495)
T KOG2533|consen  180 SLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA------WFLTDEE------------  241 (495)
T ss_pred             chhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhc------cccchHH------------
Confidence            99999999999886      34579999999999999999999999998855422      1100000            


Q ss_pred             cccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-
Q 011369          290 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-  368 (487)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-  368 (487)
                        ++...+..++.+.....     ++  ..+..+++.+++|.+|...+..++.....+++.+|+|.++.+..+++..+. 
T Consensus       242 --k~~~~~~~~~~~~~~~~-----~~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~  312 (495)
T KOG2533|consen  242 --KELVVERLRESPSGGIE-----NK--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN  312 (495)
T ss_pred             --HHHHHHHHHhccCCCcc-----cc--cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc
Confidence              00000000000000000     00  223567888999999999999999999999999999999999666776666 


Q ss_pred             eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEE
Q 011369          369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL-GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  447 (487)
Q Consensus       369 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (487)
                      .+.....++++++.+++|+++||++.-...+ ........+ ..++......................+.....+.....
T Consensus       313 ~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~-~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  391 (495)
T KOG2533|consen  313 LLSTPYDVGGIVGLILAGYLSDRLKTIFARR-LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSW  391 (495)
T ss_pred             cccchHHhhhHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhh
Confidence            7777888999999999999999964111100 333333332 23332333333323333333333334444455555666


Q ss_pred             EEeecCCCchhHH
Q 011369          448 CLHSVKPSLRALS  460 (487)
Q Consensus       448 ~~~~~~~~~r~~~  460 (487)
                      ..+...+..|...
T Consensus       392 ~s~~~~g~~k~~~  404 (495)
T KOG2533|consen  392 TSANLAGNTKALT  404 (495)
T ss_pred             ccccccchHHhHH
Confidence            6666666443333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.2e-32  Score=267.39  Aligned_cols=375  Identities=13%  Similarity=0.044  Sum_probs=251.8

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++.+..+.+.+...+.++..+...                 .|.+++ +|+++.+.+++.+++.++..+++++.|+++||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   87 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALA-----------------MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR   87 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhh-----------------hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc
Confidence            345555566667777777665542                 266665 69999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcc----hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhh
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (487)
                      +|||++++.+.++.+++.++.++.    ++++.+.+.|++.|++.+..++....++.|++|+++|++++++++.+..+|.
T Consensus        88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712        88 SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence            999999999999999998887764    5678889999999999999999899999999999999999999999999999


Q ss_pred             hhHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhh
Q 011369          220 ALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (487)
Q Consensus       220 ~~g~~~~~~l~-~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (487)
                      .+++.+.+... .+.+||+.|++.+++.++..++.+++.||.+++...++.++..  ++.    +     ++..+.    
T Consensus       168 ~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~-----~~~~~~----  232 (438)
T TIGR00712       168 GIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR--NDY----P-----DDYNEK----  232 (438)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc--ccc----c-----cccccc----
Confidence            99888776544 4578999999999988887777777666643321111100000  000    0     000000    


Q ss_pred             hhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecc
Q 011369          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (487)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~  377 (487)
                          .+..       .+.++..  .+.+++++.++...+..++.....+...+|+|.|+++..|.+.... ....+..+.
T Consensus       233 ----~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~  299 (438)
T TIGR00712       233 ----AEQE-------LTAKEIF--MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA  299 (438)
T ss_pred             ----cccc-------cchHHHH--HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH
Confidence                0000       0001111  1246788888888777777776667778899999998778776555 444556678


Q ss_pred             cchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCC
Q 011369          378 GIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (487)
Q Consensus       378 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (487)
                      ++++.+++|++.||++++++.  ...........+..+.....  .+.+......++.+++.............+..|++
T Consensus       300 ~~ig~~~~g~l~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  377 (438)
T TIGR00712       300 GIPGTLLCGWMSDKVFKGNRG--ATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK  377 (438)
T ss_pred             HHHHHHHHHHHHHHhccCccc--HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh
Confidence            899999999999999654321  11111111111111111111  12222222233333322211111122345778889


Q ss_pred             chhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .|+++.|+.+...+..|.+++|.+.|++.|+
T Consensus       378 ~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~  408 (438)
T TIGR00712       378 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  408 (438)
T ss_pred             heeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence            9999999975444444457899999998875

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.98  E-value=1.8e-32  Score=245.89  Aligned_cols=349  Identities=16%  Similarity=0.111  Sum_probs=283.2

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++.+.+..+...+.+.-...++...                 +.+.+|+|+|+.|.+++.++..+...+..++.|.+.||
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~-----------------~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr   75 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLG-----------------VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR   75 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Confidence            4456666666666666666666543                 66889999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHhhcchh---HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhh
Q 011369          144 HNPFRLIGVGLSVWTFATAGCGSSFD---FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~---~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (487)
                      ||.|++..++.++..+-++..+++.+   ++++++.+.+.|++.+ ...++..++++|+|||++|.++|+.. ..++|..
T Consensus        76 fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a  153 (417)
T COG2223          76 FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA  153 (417)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHH
Confidence            99999999999999999999998865   4599999999999877 77889999999999999999999999 8999999


Q ss_pred             hHHHHHHhhccccc---hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchh
Q 011369          221 LGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (487)
Q Consensus       221 ~g~~~~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (487)
                      +...++..+....+   ||.+-.+..+..++..+..++...+.+..+...++..                          
T Consensus       154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~--------------------------  207 (417)
T COG2223         154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL--------------------------  207 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc--------------------------
Confidence            99999999998888   9999999999888888888888754322111100000                          


Q ss_pred             hhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (487)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (487)
                                          +  ..++.++++++.|.+.+.++....++.++..++|.|++++++.++..+ .+.....+
T Consensus       208 --------------------~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~  265 (417)
T COG2223         208 --------------------P--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPL  265 (417)
T ss_pred             --------------------h--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence                                0  235667889999999999999999999999999999999999998776 56666778


Q ss_pred             ccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccCCCeeEEEE
Q 011369          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALFTVGELLVFATQAPVNYVCL  449 (487)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (487)
                      .+.+.++.+|+++||+|.+     +........++++.......       .+....+..+....++.+......+.++.
T Consensus       266 ~g~l~Rp~GG~LsDR~Gg~-----rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip  340 (417)
T COG2223         266 IGALARPLGGWLSDRIGGR-----RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIP  340 (417)
T ss_pred             HHHHHHhccchhhhhccch-----hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeech
Confidence            8889999999999999998     56666555555555544433       34555666666777788888888888888


Q ss_pred             eecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          450 HSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       450 ~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ... +++.|.+.|+. .....+|+..-|...|...|.
T Consensus       341 ~if-~~~~G~v~G~v-ga~G~lGGf~lp~~~g~~~~~  375 (417)
T COG2223         341 VIF-PKETGAVTGIV-GAIGGLGGFFLPLAFGVSLDL  375 (417)
T ss_pred             HHH-HhhhhHHHHHH-HHhccccccchhHHHHHHHHh
Confidence            887 45778899986 777777888888887776654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.98  E-value=4.5e-32  Score=260.41  Aligned_cols=329  Identities=10%  Similarity=0.032  Sum_probs=233.1

Q ss_pred             cccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 011369          101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (487)
Q Consensus       101 ~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  180 (487)
                      |.|++|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++++++++++|++.++++|+++
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  114 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ  114 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      |++.+...+....++.|++|+++|+++++++.....+|..+||++++.+.++.|||+.|++.+++.++..+..++..||+
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99998777788889999999999999999999999999999999999999888999999999988877766655556664


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      .+..   ++ +.                                          ...+..++++++++||.++...+..+
T Consensus       195 ~~~~---~~-~~------------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~  228 (413)
T PRK15403        195 VKRG---AV-PF------------------------------------------SAKSVLRDFRNVFRNRLFLTGAATLS  228 (413)
T ss_pred             cccc---CC-CC------------------------------------------ChHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            2210   00 00                                          00111245677889999998888877


Q ss_pred             HHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHH--HHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA--TFLGAISCLTA  417 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~  417 (487)
                      +.......+..+.|.++++.+|.+.... ........+..++..+.+.+.++..+++    ......  ..++.......
T Consensus       229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~ig~~l~~~~  304 (413)
T PRK15403        229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR----FIWRAVPIQLVGLALLIVG  304 (413)
T ss_pred             HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHHHHHHHHHHHHH
Confidence            7777777777788999998888886655 3222333444555555555543332221    111111  11111111111


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhccCCCee--EEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          418 --FCLSSLYGFLALFTVGELLVFATQAPVN--YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       418 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                        ...++.+..++..++.+++.+...+...  .+....   ..+|++.++. ......+...++.+.|++
T Consensus       305 ~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~---~~~G~a~a~~-~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        305 NLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN---LPKGTVSASL-NMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC---CCCcHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence              1122222334556666667666666665  332222   2368888876 334333444555555554

>TIGR00898 2A0119 cation transport protein

Probab=99.98  E-value=1.3e-32  Score=272.76  Aligned_cols=350  Identities=15%  Similarity=0.142  Sum_probs=243.8

Q ss_pred             cCCCccccccccC---ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011369          103 TSGSGIQGDFKLN---NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (487)
Q Consensus       103 p~l~~i~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (487)
                      +..|.+.+|++++   +.+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4568899999999   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      .|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.+++.++..+.. ++.||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            9999999999999999999999999999999999999999999999877654   9999999998877766655 55677


Q ss_pred             ccCCCCCCCcccch---hhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHH
Q 011369          260 QLKGFAPAESGKAQ---VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (487)
Q Consensus       260 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (487)
                      ++++...+++.++.   .++....+  .....++.   ...... +..+.          .+.....++++++|.++...
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~--~~~~~~~~---~~~~~~-~~~~~----------~~~~~~~~~l~~~~~~~~~~  329 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKIN--GKKLPAEV---LSLSLE-KDLSS----------SKKQYSFLDLFRTPNLRKTT  329 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHc--CCCCCHHH---Hhhhhh-hhhhh----------ccCCCcHHHHhCChHHHHHH
Confidence            66543222111111   00000000  00000000   000000 00000          00012355667777766655


Q ss_pred             HHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 011369          337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (487)
Q Consensus       337 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (487)
                      +......+......+.++.+..+ .+.+.  .....+..+..+++.++.+++.||+|||     +.+.+..++.++.+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~  401 (505)
T TIGR00898       330 LCLMMLWFTTAFSYYGLVLDLGN-LGGNI--YLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLL  401 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhccccc-cCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHH
Confidence            54433333222221222222222 22221  1222344567788999999999999998     6666666666666555


Q ss_pred             HHHHHHH--HHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceee
Q 011369          417 AFCLSSL--YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (487)
Q Consensus       417 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g  481 (487)
                      .....+.  +..++..++.+++.+..++..+.+..|.+|++.|+++.|+. .....+|++++|.+.+
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       402 LLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVC-STMARVGSIISPFLVY  467 (505)
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHH-HHHHHHHHHHHhHHHH
Confidence            5444332  34444555566666666677788889999999999999997 6677788899998877

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.98  E-value=3.2e-32  Score=260.08  Aligned_cols=331  Identities=17%  Similarity=0.176  Sum_probs=245.1

Q ss_pred             CcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011369          100 GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (487)
Q Consensus       100 ~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (487)
                      ++.|.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++..+...+..||
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999998999999999988887776666666665


Q ss_pred             ccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHH
Q 011369          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (487)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (487)
                      +.++.    ++++                                         .+.++..+++++.+++|.++...+..
T Consensus       169 ~~~~~----~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T PRK11102        169 TLPKE----RRQP-----------------------------------------FHLRTTIRNFASLFRHKRVLGYMLAS  203 (377)
T ss_pred             cCccc----ccCC-----------------------------------------CChHHHHHHHHHHHcChHHHHHHHHH
Confidence            32110    0000                                         00001123455667788877776666


Q ss_pred             HHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 011369          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (487)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (487)
                      ++...+...+..+.|.++.+..+.++.+. .+..+..++.+++.++.+++.||+++|     +.+..+..+..+..+...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        204 GFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHH
Confidence            66665666666677877777777776555 445566678889999999999999988     555554443322222111


Q ss_pred             ---HHH-HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceee
Q 011369          419 ---CLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (487)
Q Consensus       419 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g  481 (487)
                         ..+ +.+...+...+...+.+...........+.. |+.++++.++.+.....+|..+++.+.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        279 VSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEF-PHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence               111 2333333333333333333333333344444 5889999999766556666666666543

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=4.1e-32  Score=261.87  Aligned_cols=348  Identities=17%  Similarity=0.210  Sum_probs=253.3

Q ss_pred             hHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCC
Q 011369           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (487)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr  146 (487)
                      +..+++.++...+++...+..                 +|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~-----------------~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~   90 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY   90 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            344455556656666555542                 389999999999999999999999999999999999999999


Q ss_pred             CeEehhHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          147 FRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       147 r~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      |+++.++.+++.++++++   ++++|++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++
T Consensus        91 r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~  170 (438)
T PRK10133         91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999885   56899999999999999999999999999999988877777789999999999999999


Q ss_pred             HHHHhhcc-c-------------------------cchHHHHHHHHHHHHHHHHHH-hhccccccCCCCCCCcccchhhc
Q 011369          224 VYGGVVGS-H-------------------------LNWRYAFWGEAILMLPFAVLA-FVIKPLQLKGFAPAESGKAQVVA  276 (487)
Q Consensus       224 ~~~~~l~~-~-------------------------~~wr~~f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~  276 (487)
                      .+++.+.. .                         .+||++|+....+..+..++. ....||.+.     ++.+..   
T Consensus       171 ~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~---  242 (438)
T PRK10133        171 VFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA---  242 (438)
T ss_pred             HHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc---
Confidence            98875430 0                         256667765443333222222 222233110     000000   


Q ss_pred             ccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccce
Q 011369          277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  356 (487)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (487)
                                                            +..+..+..++++++|.++...+..++..........|.+.|
T Consensus       243 --------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  284 (438)
T PRK10133        243 --------------------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY  284 (438)
T ss_pred             --------------------------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                  000111234567788888776666666666666666778877


Q ss_pred             e-eecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          357 G-YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE  434 (487)
Q Consensus       357 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (487)
                      + ++..|.++... .......++.++|++.++++.||+++|     +.+..+..+....+++....++. ..+..+.+.+
T Consensus       285 l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g  358 (438)
T PRK10133        285 AVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGH-VGLIALTLCS  358 (438)
T ss_pred             HhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence            5 56678887666 555667788899999999999999998     66666655555444444333333 2345567788


Q ss_pred             HHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.+..+|.......+..++ +.+.+.++. . ....|+.++|.+.|.+.|.
T Consensus       359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~-~-~~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFI-V-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHHHcccch-hhccchhHH-h-HHhccchHHHHHHHHHHHh
Confidence            89999999999888888754 467788875 3 3446778899998988764

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=2e-32  Score=269.00  Aligned_cols=396  Identities=13%  Similarity=0.097  Sum_probs=270.3

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G  145 (487)
                      .+..++++.++..++...++.                 .+|.+.+|+|.++.+.+++.+.+.++..++.+++|+++||+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g   73 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNT-----------------ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG   73 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344556667777777766654                 248899999999999999999999999999999999999999


Q ss_pred             CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHH
Q 011369          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (487)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  225 (487)
                      ||++++.+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..+||.+
T Consensus        74 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         74 VRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcc----cccCcccCCCcccccccchhhhhh
Q 011369          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS----VSEGSEASNLNDHVSEDISDQASE  301 (487)
Q Consensus       226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  301 (487)
                      ++.+.++.+||+.|++..+...+..+......|+......+.+.........    .....+..................
T Consensus       154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (471)
T PRK10504        154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAV  233 (471)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHH
Confidence            9999999999999999988777666666555554321111000000000000    000000000000000000000000


Q ss_pred             hhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccch
Q 011369          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  380 (487)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (487)
                      ............++..+...+. ++++||.+.......++..........+.|.|++...|.++... .......++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  312 (471)
T PRK10504        234 GVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMG  312 (471)
T ss_pred             HHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            0000000000000000011122 36789998888877777777766666778888887677776555 344444566677


Q ss_pred             hhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCch
Q 011369          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR  457 (487)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  457 (487)
                      +.++.+++.||+++|     +.+..+..+..+...+....   .+.+......++.+++.+..++.......+.+|++.+
T Consensus       313 ~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  387 (471)
T PRK10504        313 MKRIVVQVVNRFGYR-----RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLA  387 (471)
T ss_pred             HHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhc
Confidence            778899999999998     66666666555544443332   2222223334455566666666666777778888999


Q ss_pred             hHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          458 ALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       458 ~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      +.+.|+. .+...+|..+|+.+.|.+.+
T Consensus       388 g~~~~~~-~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        388 SSGNSLL-SMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999996 67777788899999887755

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=1.1e-31  Score=264.81  Aligned_cols=374  Identities=14%  Similarity=0.103  Sum_probs=237.9

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccccc--------ccCccccchhhhHHHHHHHHHH
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVAS  134 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~--------~~s~~~~~~~~s~~~~~~~i~~  134 (487)
                      ..++..+..++.+..++|...++..                 +|.++++|        +.++.+.+++.+++.++..+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~   72 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG   72 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHh-----------------HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHH
Confidence            3456667777888888888888753                 25555554        8889999999999999999999


Q ss_pred             HHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc------------hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCC
Q 011369          135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  202 (487)
Q Consensus       135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~  202 (487)
                      +++|+++||+|||++++++.++++++.++++++            ++++.++++|+++|++.|...+...++++|++|++
T Consensus        73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence            999999999999999999999999998887763            23677899999999999999999999999999999


Q ss_pred             chhHHHHHHHhhhhhhhhhHHHHHHhhc--------cccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchh
Q 011369          203 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  274 (487)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  274 (487)
                      +|++++++.+.+..+|.++++.+++.+.        +.+|||+.|++.+++.++..+. .++.||++++...+++.++..
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~  231 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAE  231 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHH
Confidence            9999999999999999999988776543        4579999999998887776544 455677543211111111000


Q ss_pred             hcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcch--hHHH-HHHHHHHHHhhheeeee
Q 011369          275 VASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK--VYVV-NVLGYIAYNFVIGAYSY  351 (487)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~  351 (487)
                      ....  ......   +..+..++. .             ...++.....+..+...  .+.. .....+....+.+...+
T Consensus       232 ~~~~--~~~~~~---~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (479)
T PRK10077        232 GILR--KIMGNT---LATQALQEI-K-------------HSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLY  292 (479)
T ss_pred             HHHH--HHcCCh---hHHHHHHHH-H-------------HHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHH
Confidence            0000  000000   000000000 0             00000000000011100  0110 11111222222333445


Q ss_pred             cccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH--HHH--HHH
Q 011369          352 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSL--YGF  426 (487)
Q Consensus       352 ~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~  426 (487)
                      +.|.+.++ .+.+.... .......+..+++.+++++++||++||     +.+..+..+.++..+.....  .+.  ...
T Consensus       293 ~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        293 YAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            56766654 45554333 333445677788999999999999998     66666666666555444322  111  122


Q ss_pred             HHHHHHHHHHHhccC-CCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcccee
Q 011369          427 LALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  480 (487)
Q Consensus       427 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~  480 (487)
                      ....++.+++.+..+ +....++.+.+|++.|+++.|+. ...+.+|.++++.+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~~~~~~~  420 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA-VAAQWIANYFVSWTF  420 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            233344444444333 44567788888889999999997 556665666664443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=3.5e-31  Score=251.96  Aligned_cols=324  Identities=17%  Similarity=0.141  Sum_probs=228.4

Q ss_pred             CCc-cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch-hHHHHHHHHHHhhh
Q 011369          105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGV  182 (487)
Q Consensus       105 l~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~  182 (487)
                      +|. +++++|+|+.+.+++.+++.+++.++++++|+++||+|||+.++++.++..++.+++++++ +++.+++.|+++|+
T Consensus        24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  103 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI  103 (366)
T ss_pred             hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            474 8999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc----------ccchHHHH-HHHHHHHHHHHH
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFAV  251 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~wr~~f-~~~~~~~~~~~~  251 (487)
                      +.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..          +.+||+.| ++.+++.++..+
T Consensus       104 ~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  182 (366)
T TIGR00886       104 AGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL  182 (366)
T ss_pred             hchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence            9664 56678999999999999999999998888888888777766553          34899999 444655555555


Q ss_pred             HHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchh
Q 011369          252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  331 (487)
Q Consensus       252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (487)
                      +.++..+|.+++..+++  +.. .+.            + ....+                    ++..+..++.+++|.
T Consensus       183 ~~~~~~~~~~~~~~~~~--~~~-~~~------------~-~~~~~--------------------~~~~~~~~~~~~~~~  226 (366)
T TIGR00886       183 LIFFVGADTPPGKPATG--KLS-FKG------------A-RWSVG--------------------TGALGDQLKVFRDRH  226 (366)
T ss_pred             HHHHhcccCCcccccch--hcc-ccc------------c-ccccc--------------------chhHHHHHHHHhccc
Confidence            55555555332111000  000 000            0 00000                    000013445677888


Q ss_pred             HHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHH
Q 011369          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  410 (487)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  410 (487)
                      ++...+..+...........+.|.|+++.++.++.+. .+..+..+.+++++++.|++.||+++|     +.........
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~  301 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLLMSFLGV  301 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----hhHHHHHHHH
Confidence            8877777776666666777888999988888876555 455566678889999999999999998     3333333322


Q ss_pred             HHHHHHHH-H-HH--HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhc
Q 011369          411 AISCLTAF-C-LS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (487)
Q Consensus       411 ~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (487)
                      .....+.. . ..  +.+..+....+..++.+...+.......+.. ++++|++.|+. .....+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~g~~-~~~~~~g  365 (366)
T TIGR00886       302 AMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF-RRATGAVSGLV-GAIGNLG  365 (366)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc-hhhcccHHHHH-HHhccCC
Confidence            22222222 1 21  3444445555555666666666666666666 47999999986 4444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=8.7e-32  Score=258.89  Aligned_cols=342  Identities=13%  Similarity=0.089  Sum_probs=237.4

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCc-cccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      ++-+..+++..+...++......                 .+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++|
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~-----------------~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D   76 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLA-----------------VLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD   76 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh
Confidence            34455566666666655554432                 2354 67899999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhcc--------hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a--------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (487)
                      |+|||++++.+.++.+++.+.++++        .+++.+++.|+++|++.+...+....++.|++|+|+|++++++...+
T Consensus        77 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  156 (399)
T PRK05122         77 TLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA  156 (399)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Confidence            9999999999999888877666543        25778999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCccccccc
Q 011369          215 IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (487)
Q Consensus       215 ~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (487)
                      ..+|.++|+++++.+.+..|||+.+++.++..++..+.. ...|+.     ++++.++                      
T Consensus       157 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~----------------------  208 (399)
T PRK05122        157 TYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAV-----PPVKGER----------------------  208 (399)
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCC-----CCCCccc----------------------
Confidence            999999999999999999999999888766544332221 111211     0000000                      


Q ss_pred             chhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeecee
Q 011369          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVT  374 (487)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  374 (487)
                                         .       +.++.++  ..+.......+....+.....++|.|+.+. +.+... ......
T Consensus       209 -------------------~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  258 (399)
T PRK05122        209 -------------------L-------PFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAAR-GWDGAA-LALTLF  258 (399)
T ss_pred             -------------------h-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccch-HHHHHH
Confidence                               0       0000111  011111111222223333445566666543 333211 222345


Q ss_pred             ecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC
Q 011369          375 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  454 (487)
Q Consensus       375 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (487)
                      .++.+++.++.+++.||+++|     +.+..+..+..+..+.....++.+..++..++.+++.+..++.......+..|+
T Consensus       259 ~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  333 (399)
T PRK05122        259 GVAFVGARLLFGNLINRLGGL-----RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP  333 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH
Confidence            567788999999999999987     566555555555554444455555566666777777776666655566678888


Q ss_pred             CchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       455 ~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.|+++.|+. .....+|..++|.+.|++.|+
T Consensus       334 ~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~  364 (399)
T PRK05122        334 QNRGAALGAY-SVFLDLSLGITGPLAGLVASW  364 (399)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997 556666777788888887764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=2.7e-31  Score=254.16  Aligned_cols=323  Identities=13%  Similarity=0.076  Sum_probs=237.9

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      +.+++++|.|+.++|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.+
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (487)
                      ...+...+++.|++|+++|++++++.....++|..+||++++.+. .++||+.|++.++..++..++..+..||...   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~---  190 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL---  190 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence            899999999999999999999999999999999999999999998 6899999999988777666555555454110   


Q ss_pred             CCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhh
Q 011369          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (487)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (487)
                        + +.+.                                            +..+++++++++|.++...+..+.....
T Consensus       191 --~-~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (400)
T PRK11646        191 --S-TVRT--------------------------------------------PVREGMTRVLRDKRFVTYVLTLTGYYML  223 (400)
T ss_pred             --c-ccch--------------------------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence              0 0000                                            0012345567777776655544433333


Q ss_pred             heeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhh-hcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISCLTAFCLSSL  423 (487)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (487)
                      ......+.|.|+++..+.+ ... .+.++..+...++....+++.|| ++.+     +.+..+..+..+..+.....++.
T Consensus       224 ~~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~~~~l~~~~~~  297 (400)
T PRK11646        224 AVQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLLIMSLSMFPIGMVSNL  297 (400)
T ss_pred             HHHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHhhhH
Confidence            3334467888888765533 232 33233333343334444555543 4433     33444444444444444444555


Q ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          424 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +..+...++.+.+.+...+....+..+..|+++||++.|+. .....+|..+||.+.|++.|+
T Consensus       298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFS-RLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHH-HHHHHHHHHhcccchHHHHHH
Confidence            54555555666666666777778888899999999999996 667777889999999999875

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=8.8e-32  Score=266.48  Aligned_cols=386  Identities=13%  Similarity=0.116  Sum_probs=252.0

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      .+++.+..+++..+...++...++..                 +|.+.+++|+++.+.+++.+.+.+++.++.++.|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~   79 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLV-----------------LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMG   79 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557777888888888888877753                 3889999999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      ||+|||++++++.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+
T Consensus        80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (496)
T PRK03893         80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV  159 (496)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhh
Q 011369          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (487)
Q Consensus       222 g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (487)
                      ++.+++.+.+.++||+.|++.++..+ ..++.....|+..+...++++....               .+..+........
T Consensus       160 ~~~~~~~l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  223 (496)
T PRK03893        160 AAQVYSLVVPVWGWRALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPV---------------RTMVDILYRGEHR  223 (496)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccc---------------hhHHHHHhcchhH
Confidence            99999999999999999987544332 2222222234422110000000000               0000000000000


Q ss_pred             hhhcccc-------ccchhhhhhhhh-------------HHH--H-hhhcchhHHHHHHHHHHHHhhheeeeecccceee
Q 011369          302 RSIKSIG-------ESRFLNQLSQFS-------------QDT--K-VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  358 (487)
Q Consensus       302 ~~~~~~~-------~~~~~~~~~~~~-------------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  358 (487)
                      .......       .........+.+             ...  + ...+.+.........+...........++|.|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~  303 (496)
T PRK03893        224 IINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLK  303 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            0000000       000000000000             000  0 0001111111111111111112234567899997


Q ss_pred             ecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 011369          359 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGEL  435 (487)
Q Consensus       359 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  435 (487)
                      +..|.+..+. .+.....++.+++.++.|++.||+++|     +.+..+..+..+..+.....  .+.+......++.++
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR-----KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            7778876555 555667788899999999999999988     55555544444433322222  222222222233233


Q ss_pred             HHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          436 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ......+....+..+.+|++.|++++|+. .....+|..+||.+.|++.|+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFT-YNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchh-hhhhhHHHHHHHHHHHHHhcc
Confidence            33333444555667888889999999997 556667888999999998875

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=1.8e-31  Score=255.10  Aligned_cols=345  Identities=16%  Similarity=0.151  Sum_probs=258.4

Q ss_pred             hHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCC
Q 011369           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (487)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr  146 (487)
                      +..+++.++..+++....+.                 .+|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+||
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~-----------------l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~   67 (410)
T TIGR00885         5 FALITSLFALWGFANDITNP-----------------MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY   67 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34455555555555555443                 3489999999999999999999999999999999999999999


Q ss_pred             CeEehhHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          147 FRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      |++++++.++++++.+++..   .+|++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++
T Consensus        68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~  147 (410)
T TIGR00885        68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM  147 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988644   468999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc--------------------------ccchHHHHHHHHHHHHHHHHHHhhc-cccccCCCCCCCcccchhhc
Q 011369          224 VYGGVVGS--------------------------HLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVA  276 (487)
Q Consensus       224 ~~~~~l~~--------------------------~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~  276 (487)
                      .+++.+..                          ..+||++|++.+++.++..++..+. .|+..    ++++++.    
T Consensus       148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~----~~~~~~~----  219 (410)
T TIGR00885       148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN----HSDAKQI----  219 (410)
T ss_pred             HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----ccccccc----
Confidence            99887742                          2469999999998776655444322 12210    0000000    


Q ss_pred             ccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccce
Q 011369          277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  356 (487)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (487)
                                                               +..+..++++++|.++...+..+++.........+++.|
T Consensus       220 -----------------------------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y  258 (410)
T TIGR00885       220 -----------------------------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY  258 (410)
T ss_pred             -----------------------------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     000123456788888887777777777776677888888


Q ss_pred             eeecc-cccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          357 GYNIY-HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE  434 (487)
Q Consensus       357 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (487)
                      .++.. +.+.... ...........+|+++++++.||+++|     +.+.+......+.+++....++.. ....+.+.+
T Consensus       259 ~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~g  332 (410)
T TIGR00885       259 AVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCS  332 (410)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            86532 2222111 233344466789999999999999988     677777777666666666554433 355666777


Q ss_pred             HHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.+..+|.......+..+++.+..+.++. +  ..+|+.+.|.+.|++.|+
T Consensus       333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~--~~~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLV-M--AIIGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-H--HHhccchHHHHHHHHHHH
Confidence            888888899999999999776554455543 3  348999999999999983

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=2.6e-31  Score=253.73  Aligned_cols=323  Identities=11%  Similarity=0.066  Sum_probs=230.2

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehh-HHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      .+++++|.|+.+.|++.+++.++..+.+++.|+++||+||||.+++ +..+..++.+++++++|++.+++.|+++|.+.+
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  102 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS  102 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence            3678999999999999999999999999999999999999987654 566667778888999999999999999998888


Q ss_pred             hhhhhhhhhhhhcCCCCchhHH--HHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCC
Q 011369          186 SFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (487)
                      ...|....++.|+.|+++|++.  .+....+.++|..+|+++++.+.+.++||+.|++.+++.++..++.++..||.+++
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            8889888999999988777754  57888888999999999999999989999999999998777777776666763321


Q ss_pred             CCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 011369          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (487)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (487)
                      ..+++  +.                                                .+.++.++++.++......+...
T Consensus       183 ~~~~~--~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  212 (375)
T TIGR00899       183 APGAL--TR------------------------------------------------LEVRGLLASRDTRLLFVACTLMW  212 (375)
T ss_pred             ccccc--Cc------------------------------------------------chhhhhhcCcchHHHHHHHHHHH
Confidence            10000  00                                                00112344555544444333333


Q ss_pred             hhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011369          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (487)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (487)
                      ........+.|.++++..+.++... .+........+++.++.|++.||+++|     +.+.................++
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLMLLAALAGVAFYTGLAADNS  287 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHH
Confidence            3333345567888877777776544 333333345566788999999999988     5555554444444333334445


Q ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .+..+....+.+++.+...+....+..+.. |++++++.++. .....+|..++|.+.|++.|.
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~~g~~~~g~~~~~  349 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLY-TNTGRVGWIIAGSVGGILAER  349 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            555555555666666655555555555555 45677999997 445557888999999988764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=6.8e-31  Score=252.24  Aligned_cols=328  Identities=13%  Similarity=0.135  Sum_probs=234.3

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh---c-chhHHHHHHHHHHhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-a~~~~~l~~~r~l~G  181 (487)
                      +.+.+|+|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.   + .++++.+++.|+++|
T Consensus        37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G  116 (402)
T TIGR00897        37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG  116 (402)
T ss_pred             HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence            556688999999999999999999999999999999999999999999999988876552   3 358899999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhh-hhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      ++.+...+....++.+++|+++|++++|+.+.+.++|. .+++++++.+.+..||+..+|......++..++.++..++.
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
T TIGR00897       117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI  196 (402)
T ss_pred             cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            99998888888899999999999999999999999997 68999999999888977666655444444344444443332


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      ++    +++.++.                                        ++..+..+.++.++++|.++...+..+
T Consensus       197 ~~----~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T TIGR00897       197 FT----PQHMQTR----------------------------------------EKFSELGKAATILFTNPNVLLGGMVRI  232 (402)
T ss_pred             CC----cccccCC----------------------------------------cchhhHHHHHHHHHcChhHHHHHHHHH
Confidence            11    0000000                                        000011134556788999988877777


Q ss_pred             HHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHH-HHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAISCLTAF  418 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  418 (487)
                      +.....+...++.|.|+++ .+.+..+. .+.....++..++.+..|+++||+++|+     ... .......+......
T Consensus       233 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TVRWFGGVGCGIFTLALY  306 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHHHHH
Confidence            7777777778899998866 67776554 4445566888999999999999999873     322 22222222111111


Q ss_pred             H-----HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          419 C-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       419 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .     .++.+..++..++.+++.+...+ ..... .+.+|++|+++.|+. .....+|..++|.+.|.+.|.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~~~~~~~g~~~g~~-~~~~~lg~~~gp~i~g~l~~~  376 (402)
T TIGR00897       307 YIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVF-PTLAPKHKGAAMSVL-NLSAGLSAFLAPAIAVLFIGF  376 (402)
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHH-HhhCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            1     12334444455555655554322 23333 345678999999997 556666888999999988875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=5.6e-31  Score=254.51  Aligned_cols=328  Identities=10%  Similarity=0.008  Sum_probs=244.3

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc-----chhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~  180 (487)
                      |.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+..+.     .++++.+++.|+++
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  120 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD  120 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7788889999999999999999999999999999999999999999998888777665442     57889999999999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      |++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+.+..+||+.|++.++..++..++.+ ..|+.
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  199 (417)
T PRK10489        121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPAL  199 (417)
T ss_pred             HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            99999888999999999999999999999999999999999999999999888999999998877665554433 33442


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      +++.   + +++                                         +..++..+.++.++++|.++...+..+
T Consensus       200 ~~~~---~-~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (417)
T PRK10489        200 PPPP---Q-PRE-----------------------------------------HPLRSLLAGFRFLLASPVVGGIALLGG  234 (417)
T ss_pred             CCCC---c-ccc-----------------------------------------cchHHHHHHHHHHHcChHHHHHHHHHH
Confidence            2110   0 000                                         000011123445667777665554444


Q ss_pred             HHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (487)
                      +... ...+..++|.|.++..|.+.... .+.....++.+++.++.+++.||.+++     +.+..+..+..+..++...
T Consensus       235 ~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        235 LLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             HHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHc
Confidence            3332 34456678999988778776554 444556677888889999998885554     4555555544444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .++.+...+..++.+++.+...+....+..+..|++.||++.|+. ...+.+|..+||.+.|++.|.
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        309 MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLW-TAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH-HHHHhhhHhHHHHHHHHHHHH
Confidence            455555555666666666655555567778888889999999997 667777999999999998875

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=226.99  Aligned_cols=389  Identities=13%  Similarity=0.091  Sum_probs=266.8

Q ss_pred             ccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      ..+.........+....+.....+..                 .|.+.+.+|.+..|..++......|..+++..||.++
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i-----------------~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~  137 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLI-----------------LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSA  137 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHH-----------------HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheeh
Confidence            33445666655555555444444432                 2778889999999999999999999999999999999


Q ss_pred             hhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      |++|||+.+.+..+..++..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+.
T Consensus       138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~  215 (528)
T KOG0253|consen  138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF  215 (528)
T ss_pred             hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 899999999999999999877777 899999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccch---hhc---ccccCcccCCCcccccccc
Q 011369          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ---VVA---SVSEGSEASNLNDHVSEDI  295 (487)
Q Consensus       222 g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~  295 (487)
                      ...++.....++||||.....+.+..+.++ ..+++||+++..-.+.++.+.   ..+   .+....+......+...+.
T Consensus       216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~  294 (528)
T KOG0253|consen  216 EALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQ  294 (528)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence            999999999999999999988866544444 455568887654332222211   111   1111111111111111111


Q ss_pred             hhhhhh-hhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeee-----------------ccccee
Q 011369          296 SDQASE-RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY-----------------WGPKAG  357 (487)
Q Consensus       296 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~  357 (487)
                      +++... ++.+....+.......+.+.   .-+++. .+.....++...+.+++...                 ..|.+.
T Consensus       295 e~e~~~~~~~~~~a~ke~rg~~~nLls---p~lrkt-tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~  370 (528)
T KOG0253|consen  295 EQEESDLDDSKSSAAKEVRGGTTNLLS---PKLRKT-TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTEL  370 (528)
T ss_pred             hhhhhchhhhhhccccccccchHhhcC---hHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHH
Confidence            111000 00000000000011111111   112222 22222233333333333322                 233333


Q ss_pred             eeccc---ccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          358 YNIYH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE  434 (487)
Q Consensus       358 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (487)
                      +...+   .+....--..+..+..+.|.++.++++||+|||     +.+....++..++.+.+....+......+.+...
T Consensus       371 e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----kTMal~l~~f~iflfll~~c~~rn~~tvllf~ar  445 (528)
T KOG0253|consen  371 ETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTAR  445 (528)
T ss_pred             HhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence            22111   111111112345678899999999999999999     8899999999998888888777777788888899


Q ss_pred             HHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcccee
Q 011369          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  480 (487)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~  480 (487)
                      ++..+.+...+.+.++.+|+..|+++.|.+ ..++.+|+++.|.++
T Consensus       446 afisg~fqvaYvYtPEVyPTavRatgvGtc-SsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  446 AFISGAFQVAYVYTPEVYPTAVRATGVGTC-SSMARIGGIFSPVIA  490 (528)
T ss_pred             HHHhchheEEEEecCcccchhhhhcchhhh-hhHHhhhhhhhhHHH
Confidence            999999999999999999999999999998 888999999999775

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=5.7e-31  Score=252.67  Aligned_cols=328  Identities=12%  Similarity=0.069  Sum_probs=236.0

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++.++.++..++.+++.+++|++.+++.|++.|+
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  108 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL  108 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      +.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..|||+.|++.+++.++..++..+..||.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99988888889999999999999999999999999999999999999988999999999988777666555555565321


Q ss_pred             CCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (487)
                      ..     +++.                                            +..+.+++.+++|.++...+..+..
T Consensus       189 ~~-----~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        189 AD-----ARRT--------------------------------------------RVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             cc-----cchh--------------------------------------------HHHHHHHHHHcChHHHHHHHHHHHH
Confidence            10     0000                                            0113455667777776655554444


Q ss_pred             Hhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH--
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  419 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (487)
                      ......+..+.+.++++..+.+.... .+.....++.+++..+.+++.||.+++.    ........+..........  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  295 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM----WQSVICCLLAGLLMWIPGWFG  295 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence            44444445556777777677775444 3333334455556666666666665220    1211222222222211111  


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      ..+.+......++.+++.+...+.......+..| ++++++.++. .....+|..+++.+.|.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        296 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALL-GGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHH-HHHHHHHHHHHHHHHHHccC
Confidence            1233445555666677777777777776667664 6789999997 55566787888888777654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.7e-31  Score=250.96  Aligned_cols=343  Identities=15%  Similarity=0.167  Sum_probs=261.1

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  186 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g~  186 (487)
                      ..+++.++.+.+++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            568999999999999999999999999999999999999999999999999999998875  456889999999999999


Q ss_pred             hhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 011369          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (487)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (487)
                      .+|+...+.+.|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.++++++..++.+++..+++.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999988887777655433321


Q ss_pred             CCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhh
Q 011369          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (487)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (487)
                      .-.+++                    .+.+++...++..+           .+...+++++++++.+|...+..+....+
T Consensus       225 ~is~~E--------------------l~~I~~~k~~~~~~-----------~~~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  225 NISEKE--------------------LKYIEKGKSEAHVK-----------KKPPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             CCCHHH--------------------HHHHHhcccccccC-----------CCCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence            111100                    01111111100000           00224688999999999999999999999


Q ss_pred             heeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccc---hhhhHHH-HHHHHHHHHHHHHHHHH
Q 011369          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKLL-SAATFLGAISCLTAFCL  420 (487)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~  420 (487)
                      .+.+..|+|.|+++..+++..+. .+.+++.+...+..+++|.++||+.+|.   ...++.+ .++....+++++.+...
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            99999999999999999997777 7778999999999999999999998741   1112333 33344444444444444


Q ss_pred             HH--HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          421 SS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       421 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                      +.  .+..++++.+.....+ ..............|++.+..+|+. +....+.++++|.+.|.+.
T Consensus       354 ~~~~~~~a~~~l~~~~~~~g-~~~~Gf~~~~~~~apq~a~~l~g~~-~~~~~~~~~~~P~~vg~~~  417 (466)
T KOG2532|consen  354 SDEHRLLAVILLTIAIGLSG-FNISGFYKNHQDIAPQHAGFVMGII-NFVGALAGFIAPLLVGIIV  417 (466)
T ss_pred             CCCcchHHHHHHHHHHHHcc-cchhhhHhhhhhccchHHHHHHHHH-HHHHHHHHHHHHHheeeEe
Confidence            42  2223333333222222 2222233333332578999999997 5566667789999999987

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=4.7e-31  Score=253.07  Aligned_cols=318  Identities=14%  Similarity=0.073  Sum_probs=221.7

Q ss_pred             CCc-cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hc-----chhHHHHHH
Q 011369          105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS-----SFDFWSIAI  175 (487)
Q Consensus       105 l~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-----a~~~~~l~~  175 (487)
                      +|. +.+|+|.|..++|++.+++.+++.++++++|+++||+||||+++.+.++..++.+..   +.     .+|++.+++
T Consensus        38 l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (392)
T PRK12382         38 IPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVV  117 (392)
T ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence            454 678999999999999999999999999999999999999999999988777655432   22     368899999


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      +|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..+||++++.+.+.+|||+.+.+..+..++.... ..
T Consensus       118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~  196 (392)
T PRK12382        118 GRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NG  196 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999899999877665443322211 11


Q ss_pred             ccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHH
Q 011369          256 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  335 (487)
Q Consensus       256 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (487)
                      ..||.     +++++++                                         .+.+   +..+... .+.+.  
T Consensus       197 ~~~~~-----~~~~~~~-----------------------------------------~~~~---~~~~~~~-~~~~~--  224 (392)
T PRK12382        197 TVRKV-----PAHAGER-----------------------------------------PSLW---SVVGLIW-KPGLG--  224 (392)
T ss_pred             hccCC-----CCCcccC-----------------------------------------chHH---HHHHHHH-HhHHH--
Confidence            11211     0000000                                         0000   0111111 11111  


Q ss_pred             HHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH
Q 011369          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (487)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (487)
                         .++..........+.|.|+++ .+.+... .......++.+++.+..|++.||+++|     +.+..+..+..+..+
T Consensus       225 ---~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~  294 (392)
T PRK12382        225 ---LALQGVGFAVIGTFVSLYFAS-KGWAMAG-FTLTAFGGAFVLMRVLFGWMPDRFGGV-----KVAIVSLLVETVGLL  294 (392)
T ss_pred             ---HHHHHHHHhHHHHHHHHHHHh-cCCchhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----eehHHHHHHHHHHHH
Confidence               111222233344556666655 3443322 222334566678889999999999988     455555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          416 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .....++.+..++..++.+++.+...+.......+..|+++|+++.|+. .....+|..++|.+.|++.|+
T Consensus       295 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~ig~~~~g~l~~~  364 (392)
T PRK12382        295 LLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY-AAFQDIAYGVSGPLAGMLATS  364 (392)
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555666677777666666666677888889999999997 556667888999999988774

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=4.6e-31  Score=249.64  Aligned_cols=325  Identities=14%  Similarity=0.042  Sum_probs=237.2

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+|.+++|+|.+..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|+
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~   99 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGV   99 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999988888877 78899999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      +.+...+....++.|++| ++|++++++++.+..+|..+++.+++.+.++.  +||+.|.+.+++.++...   ...|+.
T Consensus       100 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~~  175 (355)
T TIGR00896       100 GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQV  175 (355)
T ss_pred             HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhhh
Confidence            999988888889999987 68999999999999999999999998887664  399999887765433322   222432


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      +++.   ++.+..                                        .     ....++++|+|.++...+..+
T Consensus       176 ~~~~---~~~~~~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       176 RRRV---AANQTT----------------------------------------T-----RLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             cccc---CCCCCC----------------------------------------C-----CCCCchhhcCHhHHHHHHHHH
Confidence            1110   000000                                        0     001234567787777666666


Q ss_pred             HHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (487)
                      +....++....|+|.|+++ .+.+.... ...+...++.++++++.|++.||+++|+    ..+.++..+..++.+....
T Consensus       208 ~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHHHHHHHHH
Confidence            6666666777889999987 57765555 5556677889999999999999996542    3444444444444433333


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-CCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      ..+..... ...+.+++.+..++.......+..+ ++.++...++. .....++.+++|.+.|++.|++
T Consensus       283 ~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       283 APMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMA-QSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             hhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            33222222 3455677776666655444444444 46778888886 5556667778999999998753

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1.3e-30  Score=250.83  Aligned_cols=327  Identities=19%  Similarity=0.158  Sum_probs=236.2

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++++++++.+++.|+++|+
T Consensus        27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  106 (401)
T PRK11043         27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV  106 (401)
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      +.+...+....++.|++|++++++..+.......+|..++|.+++.+.++++||+.|++.+++.++..+..++..|+. +
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~  185 (401)
T PRK11043        107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK-K  185 (401)
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC-C
Confidence            998888888899999999999999999999999999999999999999999999999999888777666555443321 1


Q ss_pred             CCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (487)
                           +++++.                                             ...++++++++|.++...+.....
T Consensus       186 -----~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  215 (401)
T PRK11043        186 -----ARKQSQ---------------------------------------------DALTFKQLLKSKTYLGNVLIFAAC  215 (401)
T ss_pred             -----ccccch---------------------------------------------HHHHHHHHHcChhHHHHHHHHHHH
Confidence                 000000                                             002345566777766555444444


Q ss_pred             Hhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH--
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  419 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (487)
                      ......+..+.|.++++ .+.+.... .......++.+++.++.+++.||+++|+..  +.......+..........  
T Consensus       216 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        216 SAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL--PWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence            44445556677888765 57775544 322334456677888889999999877321  1111222222221111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      .++.+..+....+.+++.+..++.......+.. ++.++++.|+.+ ..+..++..++.+.|.+.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~-~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGKAAALQN-TLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChHHHHHHH-HHHHHHHHHHHHHHHHccC
Confidence            123333444455666666766666655555555 467999999974 4555566677777777765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=6.2e-31  Score=250.91  Aligned_cols=339  Identities=17%  Similarity=0.173  Sum_probs=237.2

Q ss_pred             hHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCC
Q 011369           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (487)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr  146 (487)
                      +..+++..++...+...+..                 .+|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~-----------------~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~   70 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNT-----------------LVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF   70 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            44444555555555555543                 3489999999999999999999999999999999999999999


Q ss_pred             CeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHH
Q 011369          147 FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  226 (487)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~  226 (487)
                      |+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.++
T Consensus        71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633         71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhcc
Q 011369          227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  306 (487)
Q Consensus       227 ~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (487)
                      +.+.+...|+..+. .+........+.+...+++     ++++ ++.                                 
T Consensus       151 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~-~~~---------------------------------  190 (381)
T PRK03633        151 SKVSTELMSVLPWV-TGLVLAAILPLLFTRILNQ-----QAEN-HDS---------------------------------  190 (381)
T ss_pred             hcccccccchHHHH-HHHHHHHHHHHHHhcccCC-----CCCC-CCC---------------------------------
Confidence            99887543333322 2222111111111111110     0000 000                                 


Q ss_pred             ccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhh
Q 011369          307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISG  385 (487)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  385 (487)
                                    ++.++.+++|.++......+...........++|.|+++ .+.+.... .+.++..++.+++++..
T Consensus       191 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~  255 (381)
T PRK03633        191 --------------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPI  255 (381)
T ss_pred             --------------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence                          012334566666654443344433444455678888876 46665444 44456667888999999


Q ss_pred             hhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHH
Q 011369          386 GFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  465 (487)
Q Consensus       386 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~  465 (487)
                      +++.||+++|     +.+..+..+..+..+...  .. ........+.+.+.....+.....+.+..|+++++...+.. 
T Consensus       256 g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-  326 (381)
T PRK03633        256 GRLADRFGRL-----LVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL-  326 (381)
T ss_pred             HHHHHHcCcH-----HHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH-
Confidence            9999999998     555555554444433332  11 12222333444444455666666677888777777777775 


Q ss_pred             HHHHhhcCCCccceeeeeecc
Q 011369          466 VSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       466 ~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .....+|.++||.+.|++.|+
T Consensus       327 ~~~~~lG~~igp~~~G~l~~~  347 (381)
T PRK03633        327 LLSYTVGSLLGPSFTAMLMQN  347 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            456777889999999998775

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=2.4e-30  Score=248.19  Aligned_cols=267  Identities=15%  Similarity=0.127  Sum_probs=207.0

Q ss_pred             CCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 011369          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       104 ~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g  183 (487)
                      ++|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||++++++.++..++.+++..++|++.+++.|+++|++
T Consensus        25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~  104 (392)
T PRK10473         25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG  104 (392)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCC
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (487)
                      .+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++.++..||+.++
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999999999999988888999999999988877777766666653211


Q ss_pred             CCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 011369          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (487)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (487)
                      .   ++.+..                                             ..+..++.++++.++...+...+..
T Consensus       185 ~---~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  216 (392)
T PRK10473        185 R---APAASS---------------------------------------------KPRENSESLLNRFFLSRLVITTLSV  216 (392)
T ss_pred             c---cCCccc---------------------------------------------hHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            1   000000                                             0012234456666655444443333


Q ss_pred             hhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011369          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (487)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (487)
                      .....+..+.|.++++..|.+.... .......++.+++.++.+++.||+++|     +.+..+..+..+..+......+
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~  291 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQVLFLAAGITLALSPS  291 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333345566777777777776554 444556778889999999999999988     5666555555554444444333


Q ss_pred             H
Q 011369          423 L  423 (487)
Q Consensus       423 ~  423 (487)
                      .
T Consensus       292 ~  292 (392)
T PRK10473        292 H  292 (392)
T ss_pred             H
Confidence            3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=8.4e-31  Score=253.14  Aligned_cols=327  Identities=13%  Similarity=0.121  Sum_probs=237.8

Q ss_pred             CCccccccccCccc-----cchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011369          105 GSGIQGDFKLNNFQ-----DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (487)
Q Consensus       105 l~~i~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (487)
                      +|.+.+++|.+..+     .+++.+++.++..++++++|+++||+|||++++.+.++.+++.++++++++++.+++.|++
T Consensus        37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (408)
T PRK09874         37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL  116 (408)
T ss_pred             HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            48888899988665     4888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      .|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+||+.|++.+++.++..+..++..||
T Consensus       117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (408)
T PRK09874        117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRE  195 (408)
T ss_pred             HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999865 5677888999999999999999999999999999999999999998999999999998877776666666555


Q ss_pred             ccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHH-HH
Q 011369          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV-LG  338 (487)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  338 (487)
                      ..+..++   ++.                                         .+    .++..+.++++.++... ..
T Consensus       196 ~~~~~~~---~~~-----------------------------------------~~----~~~~~~~~~~~~~~~~~~~~  227 (408)
T PRK09874        196 NFQPVSK---KEM-----------------------------------------LH----MREVVTSLKNPKLVLSLFVT  227 (408)
T ss_pred             Ccccccc---hhh-----------------------------------------hH----HHHHHHhCcCCchHHHHHHH
Confidence            3211000   000                                         00    01112234555544322 22


Q ss_pred             HHHHHhhheeeeecccceeeecccccccc---e-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHH
Q 011369          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNAD---M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (487)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  414 (487)
                      .+...........++|.|..+..+.....   . .+..+..++.+++.+..|++.||+++|     +.+..+..+..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~  302 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----KILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHH
Confidence            22233333334455666666543322111   1 222334566778888899999999998     55555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.....++.+...+..++.+++.+...+.......+..+++.+|+..++. .....+|..+||.+.|++.|.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~~gp~~~G~l~~~  373 (408)
T PRK09874        303 IPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYN-QSFRDIGNVTGPLMGAAISAN  373 (408)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHH-HHHHHHHHHhhHHHHHHHHhh
Confidence            44444445555555666677777776666666667778889999999996 666777889999999988764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=2.5e-30  Score=246.83  Aligned_cols=325  Identities=14%  Similarity=0.094  Sum_probs=225.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      +.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.++++++++++++.   ++.|+++|++.+
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999888877664   789999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (487)
                      ...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++. ++..+..||.+.+..
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~  181 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRP  181 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccc
Confidence            99999999999999999999999999999999999999999999885 4888887776554433 333444565321110


Q ss_pred             CCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhh
Q 011369          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (487)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (487)
                      +.+.+..                                         ...++..+..+.++++|.+........+....
T Consensus       182 ~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  220 (393)
T PRK11195        182 GQSWNPI-----------------------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA  220 (393)
T ss_pred             ccCCCHH-----------------------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            0000000                                         00111122345566777665544443333333


Q ss_pred             heeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (487)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (487)
                      .....+..|.|+++.++.++... .......++.+++.+..+++.||.+++     +.+..+.... ...+.....++.+
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g~~~~-~~~~~~~~~~~~~  294 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAGILMG-LVVLLMALQHSLL  294 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHHHHHH-HHHHHHHHHhHHH
Confidence            33444555667777778776665 444555677778888888888876665     4444443332 2222233344455


Q ss_pred             HHHHHHHHHHHHHhccCCCeeEEEEeecCCCc-hhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          425 GFLALFTVGELLVFATQAPVNYVCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      ......++.+++.+...++......+..|++. +|++.++. .....++..++..+.+.+
T Consensus       295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~-~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQ-NFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            45556667777777666666666666544444 79999986 556666766666665543

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=4.9e-30  Score=245.04  Aligned_cols=325  Identities=16%  Similarity=0.105  Sum_probs=239.4

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      +.+++++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.++++|++.|.+.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (487)
                      ...+....+..|.+|+++|++++++.....++|..++|++++.+.. .+||.+|++.+++.++..++..+..|+..++. 
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~-  189 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI-  189 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence            8888899999999999999999999999999999999999998875 79999999988877766555555455422110 


Q ss_pred             CCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhh
Q 011369          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (487)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (487)
                         ++++.                                        +.     .+.++.+++|.++...+..++....
T Consensus       190 ---~~~~~----------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        190 ---ATETG----------------------------------------SV-----WSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             ---ccchh----------------------------------------hh-----hhhhhhccCceehHHHHHHHHHHHH
Confidence               00000                                        00     1124567888888777666665555


Q ss_pred             heeeeecccceeeec--ccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-HH
Q 011369          346 IGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LS  421 (487)
Q Consensus       346 ~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  421 (487)
                      ...+..+.+.|....  .+.+.... .+.....+.........+++.||.++|     +.+..+..+..+....... .+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~  296 (395)
T PRK10054        222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMTAGTLCFVIGLVGFIFSGN  296 (395)
T ss_pred             HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHHHHHHHHHHHHHHHHHcch
Confidence            544445556655332  22232222 233334445555667778889998887     5555555444444433332 23


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      +.+...+...+.+++.....+.....+.+..|++.++++.+.. . ...+|..+||.++|++.|++
T Consensus       297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~-~-~~~~G~~~Gp~~~G~l~~~~  360 (395)
T PRK10054        297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ-S-LGWLGAAINPLVSGVILTTL  360 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH-H-HHHHHHHHHHHHHHHHHHHc
Confidence            4444555666777776666666666777788889999998874 3 45568899999999998863

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=6.2e-30  Score=242.02  Aligned_cols=303  Identities=21%  Similarity=0.313  Sum_probs=262.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++..++.++..++++++.+++.|++.|++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  101 (352)
T cd06174          22 LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG  101 (352)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence            37788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      +...+...+++.|++|+|+|++.+++......+|..+++.+++.+.+..+||+.|++.+++.++..+...+..       
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  174 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------  174 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            9999999999999999999999999999999999999999999999988999999999888776665544331       


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                                                                                       |.++...+..+....
T Consensus       175 -----------------------------------------------------------------~~~~~~~~~~~~~~~  189 (352)
T cd06174         175 -----------------------------------------------------------------RLLLLLALAFFLLSF  189 (352)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence                                                                             334555566666666


Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLSAATFLGAISCLTAFCLSS  422 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  422 (487)
                      .......+.|.+.++..+.+..+. .......++..++.++.+++.||+++|     + .+..+..+..+..+.....++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhcc
Confidence            677777888888888767666555 555677788899999999999999998     6 677777777777766666666


Q ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      .+...+..++.+++.+...+....+..+..|+++|++..|+. .....+|..++|.+.|.+.|
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLF-NTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            777778888889999988999999999999999999999997 66777788899999988775

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=7.7e-31  Score=252.30  Aligned_cols=329  Identities=14%  Similarity=0.062  Sum_probs=230.2

Q ss_pred             Cccccccc--cCccccchhhhH-----HHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHH-------
Q 011369          106 SGIQGDFK--LNNFQDGVLSSA-----FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW-------  171 (487)
Q Consensus       106 ~~i~~~~~--~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~-------  171 (487)
                      +.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||++++++.++..++.++++++++++       
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T TIGR00883        17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP   96 (394)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Confidence            44444433  445556665543     3333457899999999999999999999999999999999999875       


Q ss_pred             -HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc--------cccchHHHHHHH
Q 011369          172 -SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGE  242 (487)
Q Consensus       172 -~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~  242 (487)
                       .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|.+++++++..+.        +.++||+.|++.
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  176 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVS  176 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHH
Confidence             48999999999999999999999999999999999999999999999999998876653        357899999988


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHH
Q 011369          243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  322 (487)
Q Consensus       243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (487)
                      +++.++..+. ....||+++...++++.+                                          +.    ..+
T Consensus       177 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------------------------~~----~~~  209 (394)
T TIGR00883       177 AVLVLIGLYL-RRNLEETPVFEKAQEKHK------------------------------------------KK----RGP  209 (394)
T ss_pred             HHHHHHHHHH-HHhcCCChhHHHHHhccc------------------------------------------cc----cCC
Confidence            7665443332 222333211100000000                                          00    011


Q ss_pred             HHhhhcchh--HHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhh
Q 011369          323 TKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  399 (487)
Q Consensus       323 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  399 (487)
                      .++.++++.  ++......+...........+.|.|+++..+.+.... ....+..++..++.++.+++.||++||    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----  285 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR----  285 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----
Confidence            222333333  5555556666666666677788999977777776554 444556678889999999999999988    


Q ss_pred             hHHHHHHHHHHHHHH-HHH-HHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCC
Q 011369          400 FKLLSAATFLGAISC-LTA-FCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                       +.+.....+..... ... ...  .+.+......++.+++.+...++....+.+.+|++.|+++.++.....+..|..+
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~  364 (394)
T TIGR00883       286 -PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF  364 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence             44443333222222 111 111  2344445555666777777777788888999999999999998545667778889


Q ss_pred             ccceeeeeecc
Q 011369          476 SSPLVGVLQVC  486 (487)
Q Consensus       476 ~p~~~g~l~~~  486 (487)
                      +|.+.|++.|+
T Consensus       365 ~p~~~g~l~~~  375 (394)
T TIGR00883       365 APYIAAALVAM  375 (394)
T ss_pred             HHHHHHHHHHH
Confidence            99999998775

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=3.1e-30  Score=245.91  Aligned_cols=326  Identities=12%  Similarity=0.009  Sum_probs=249.6

Q ss_pred             CCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEe----hhHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011369          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRML  179 (487)
Q Consensus       104 ~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (487)
                      .+|.+.+|+|.|..++|++.+++.+...++++++|+++||+|||+..    .++..+..+  ..+..+++++.+++.|++
T Consensus        26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l  103 (382)
T TIGR00902        26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGL  103 (382)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHH
Confidence            34788899999999999999999999999999999999999985432    222222222  244578899999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +|.+.+...|...++..++  +++|+++.+......++|.+++|++++.+.+++|||..|++.++... ..++.++..|+
T Consensus       104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~~~~~  180 (382)
T TIGR00902       104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFLIKPT  180 (382)
T ss_pred             HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHcCCC
Confidence            9999988889988888765  46889999999999999999999999999999999999998766532 22233333232


Q ss_pred             ccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHH
Q 011369          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (487)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (487)
                      .+++ +++++++.                                             +..++.++++|+|+++...+..
T Consensus       181 ~~~~-~~~~~~~~---------------------------------------------~~~~~~~~~l~~~~~~~~l~~~  214 (382)
T TIGR00902       181 IPPK-DAIPEDES---------------------------------------------QGDSAFIALLKNPMNLRFLAAV  214 (382)
T ss_pred             CCCC-cccccccc---------------------------------------------ccchhHHHHHcChHHHHHHHHH
Confidence            1111 00000000                                             0012355678999999988888


Q ss_pred             HHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 011369          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (487)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (487)
                      ++...+...+..+.|.|+++ .|.+.... ....+..++.+++.+..+++.||++.|     +.+.++.+...+......
T Consensus       215 ~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       215 CLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHHH
Confidence            88788888888899999987 67776555 444455577777888888888998887     777777777777777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      ..++.+..+...++.++..+...+....++.+. |+++++++.++++.....+|.+++|.+.|++.|++
T Consensus       289 ~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~  356 (382)
T TIGR00902       289 AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL  356 (382)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677778788888899998888888888788777 88899999999755667788899999999998863

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=9.5e-29  Score=236.64  Aligned_cols=322  Identities=10%  Similarity=0.069  Sum_probs=209.9

Q ss_pred             CccccccccCccccchhhhHHHH-HHHHHHHHHHHhhhhcCCCeEe-hhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g  183 (487)
                      +.+.+|+|.+++++|++.+...+ +..++.+++++ +||+||||.+ +.+.++.+++..+.+++++++.+++.+.+.|..
T Consensus        40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44788999999999999876655 66666655665 9999999875 455666677888888999999987766665555


Q ss_pred             hhhhhhhhhhhhhhcCCCCch--hHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          184 EASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      .+...|....++.|+.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++.++..++..+..++..||.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            567788888999998876655  345678889999999999999999999999999999999888877777666666642


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                      ++.++  .++..                                        +       ..++  +++..+........
T Consensus       199 ~~~~~--~~~~~----------------------------------------~-------~~~~--~~~~~~~~~~~~~~  227 (393)
T PRK15011        199 KELPL--ATGTL----------------------------------------E-------APRR--NRRDTLLLFVICTL  227 (393)
T ss_pred             CCCcc--ccccc----------------------------------------c-------cccc--ccccHHHHHHHHHH
Confidence            21100  00000                                        0       0000  00111222222222


Q ss_pred             HHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011369          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (487)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (487)
                      .......+..+.|.|+++.++.+.... .+.....+..+++.++.|+++||+++|     +.+..+..............
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~  302 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----FLMRVAAVAGVCFYAGMLMA  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHH
Confidence            333334445678888887778776554 333444466677889999999999998     44444433333333222233


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ++.+..++..++.++..+...+....+..+.. |+.++++.++.+. ...+|..++|.+.|++.|+
T Consensus       303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~-p~~~g~~~~~~~~-~~~lg~~~g~~l~G~i~~~  366 (393)
T PRK15011        303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLM-PGQAGSATTLYTN-TSRVGWIIAGSLAGIVAEI  366 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            44444443333333333333332333334445 4569999999744 5567888999999988774

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=237.55  Aligned_cols=374  Identities=14%  Similarity=0.104  Sum_probs=279.9

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHH-HHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAIC-RMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~-r~l~G~g~  184 (487)
                      +.++++++.+.++++|+.++......+..++.+.+.||+|.|++.++|.++.+++.++.++++++|++++. -++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999988665 57789999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (487)
                      |..+..+..++..||+ |+|+.+.|+...+.++|.++-|++...+.+.+|||+.+++.+.+.+-..+....+.|...+..
T Consensus       150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~  228 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK  228 (509)
T ss_pred             hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            9999999999998887 599999999999999999999999999999999999999999998888887777777544332


Q ss_pred             CCCCcccchhhcccccCc-----ccCCCcccccccchhhhhhhhhccccccchhhhhhhhh-HHHHhhhcchhHHHHHHH
Q 011369          265 APAESGKAQVVASVSEGS-----EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS-QDTKVLLQEKVYVVNVLG  338 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  338 (487)
                      ++.+++............     .....+....................++.  ...+... .--.++++++.++...+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~ll~~~~fl~~~~~  306 (509)
T KOG2504|consen  229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRN--SPLQAFLSMLDLSLLKDPKFLLLALS  306 (509)
T ss_pred             chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccc--cchhhhhhhhhHHHHcCchHHHHHHH
Confidence            220000000000000000     00000000000000000000000000000  0000000 111467899999999999


Q ss_pred             HHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 011369          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (487)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (487)
                      ..+...++.....++|.|..+ .+++..+. ...++.++..++++++.|++.|+...++.   .+..++.++..+..+..
T Consensus       307 ~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~  382 (509)
T KOG2504|consen  307 NLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFL  382 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHH
Confidence            999999999999999999996 56665555 77788899999999999999999885432   45566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      ....+.+.++....++|++.+...........+.++.+.-..+.|+. ...+.++..+||.+.|++.|.+
T Consensus       383 p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~-l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  383 PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLL-LLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHH-HHHhHHHHHcCcccceeeeecc
Confidence            67777888888888888888877666667888899889999999997 7788889999999999998864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1e-27  Score=236.60  Aligned_cols=340  Identities=14%  Similarity=0.165  Sum_probs=239.3

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011369          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFID  196 (487)
Q Consensus       117 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~  196 (487)
                      .+.+|+.+.+.++..++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhh
Q 011369          197 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  275 (487)
Q Consensus       197 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  275 (487)
                      |..|++.||...+..+....+|..++..++....+. ++||..+.+..+++++..+. .++.||++++..+..+.++...
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~  247 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKR  247 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHH
Confidence            999999999999999999999999997666655443 58999999999998888888 7777887776544222221111


Q ss_pred             ccc-ccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeeccc
Q 011369          276 ASV-SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP  354 (487)
Q Consensus       276 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  354 (487)
                      ... ..... ..+.+++.+........+....  ...  ....+...   +..+++.++...+..+.+..+.....+|.+
T Consensus       248 ~l~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~  319 (513)
T KOG0254|consen  248 SLKRLRGLS-PEDVEVELELLKIKLLVEAEVA--EGK--ASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYST  319 (513)
T ss_pred             HHHHHhCCC-CcchHHHHHHHHHHHHHhhhcc--ccc--ccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehH
Confidence            100 00000 1111111111110000000000  000  00111111   234456667777888888889999999999


Q ss_pred             ceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH------------H
Q 011369          355 KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS------------S  422 (487)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  422 (487)
                      .+++.....++. .....+..+..+++.+++.++.||+|||     ++++.+...+.++.++.....            .
T Consensus       320 ~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
T KOG0254|consen  320 TIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGA  393 (513)
T ss_pred             HHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccch
Confidence            998875544332 3333455677788888889999999999     777777777776665554321            1


Q ss_pred             HHHHHHHHHHHHHHHhccCCCeeEE-EEeecCCCchhHHHHHHHHHHHhh
Q 011369          423 LYGFLALFTVGELLVFATQAPVNYV-CLHSVKPSLRALSMAISTVSIHIF  471 (487)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~g~~~~~~~~~  471 (487)
                      .+..++..++....++..+.++.+. ..|.+|.+.|+.+.++.....+..
T Consensus       394 ~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  394 GWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             hHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            2345555666666677777777764 466666699999999975444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-28  Score=215.64  Aligned_cols=324  Identities=15%  Similarity=0.030  Sum_probs=248.8

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      .++.+-+..++|++.+.+.+...+.+++.|.+.||+|+|..+++|+++....++++++.++++.++++|.+||+|.+...
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCC-chhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 011369          189 SLAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (487)
Q Consensus       189 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (487)
                      +++.++++|.+|++ +|++++|+.-.+.++|..+||++||.+++..|.+.+|++.+++.++-..+.+++.+......+  
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--  255 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--  255 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--
Confidence            99999999999975 479999999999999999999999999999999999999999999998888888744211110  


Q ss_pred             CcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhe
Q 011369          268 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  347 (487)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (487)
                      +..+                                                -.++++++++|.++.........+....
T Consensus       256 ~~~~------------------------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~la  287 (464)
T KOG3764|consen  256 STEQ------------------------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLA  287 (464)
T ss_pred             cccc------------------------------------------------CccHHHHHhCchHhhhhcchhhccchHH
Confidence            0000                                                0246678899998887777666666666


Q ss_pred             eeeecccceeeeccccccccee-eeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 011369          348 AYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL---  423 (487)
Q Consensus       348 ~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  423 (487)
                      ...-.++.++.+....+..... ......+...++..+.|.+.||++..+.   .....+.......+......++.   
T Consensus       288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w---l~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW---LLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH---HHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            6666667777776664443443 3334557889999999999999995421   34444444444444444444443   


Q ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEeecCCC---chhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          424 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +......++.+........+...+..+....+   .-|...++. .....+|.++||.++|.+.+.
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIa-d~a~sla~a~GP~~gg~iv~~  429 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIA-DAAFSLAYAIGPTFGGSLVEA  429 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHH-HHHHHHhhhccccccchheee
Confidence            33334444444444455555555555555444   678889997 677888999999999998764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=1.7e-28  Score=232.20  Aligned_cols=311  Identities=13%  Similarity=0.070  Sum_probs=229.5

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-----CCCeE-ehhHHHHHHHHHHHhhcc---hhHHHH
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSI  173 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a---~~~~~l  173 (487)
                      +.+|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....++.   .+++.+
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            34588999999999999999766 555555 99999999998     89987 567777777777777777   467778


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc--------hHHHHHHHHHH
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAIL  245 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--------wr~~f~~~~~~  245 (487)
                      ....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+        ||.+|++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999999999999988888        99999999988


Q ss_pred             HHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHh
Q 011369          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (487)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (487)
                      .++..+..++..||+.+.  ++++ +.                                          ..++..+.+++
T Consensus       167 ~l~~~~~~~~~~~e~~~~--~~~~-~~------------------------------------------~~~~~~~~~~~  201 (356)
T TIGR00901       167 ILPGLLVTLFLAKEPQED--ASVP-KP------------------------------------------LTQAVLKPIRE  201 (356)
T ss_pred             HHHHHHHHHHhccCCCcc--cccc-hh------------------------------------------HHHHHHHHHHH
Confidence            777665555555552111  0000 00                                          00011123455


Q ss_pred             hhcchh---HHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceee-cccchhhhhhhhhHhhhcccchhhh
Q 011369          326 LLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-VCGIVGTISGGFILDQMGATISNAF  400 (487)
Q Consensus       326 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~  400 (487)
                      ++++|.   ++...+..++..........+.|.|+++ .|.+..+. .+..+.. +..+++.++++++.||+|+|     
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----  275 (356)
T TIGR00901       202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----  275 (356)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----
Confidence            566654   6666666666666677777888999887 77776554 3333333 56778999999999999988     


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHH
Q 011369          401 KLLSAATFLGAISCLTAFCL-----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  466 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~  466 (487)
                      +.+..+.++..+........           ++.+......++.+++.+..++....+..+..|+++||+..|+.+.
T Consensus       276 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  352 (356)
T TIGR00901       276 YALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSS  352 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            55555555544444333222           2334455556677788888888899999999999999999999744

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=3e-29  Score=239.29  Aligned_cols=326  Identities=13%  Similarity=0.020  Sum_probs=235.3

Q ss_pred             CCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCC----eEehhHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011369          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (487)
Q Consensus       104 ~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (487)
                      .+|.+.+|+|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......+++++.+++.|++
T Consensus        26 ~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l  103 (382)
T PRK11128         26 FWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGL  103 (382)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999994    3332222222  22334456889999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      .|++.+...+...+++.++  +++|+++.+......++|..+||++++.+.+++|||..|++.++..++..+ ..+..||
T Consensus       104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~  180 (382)
T PRK11128        104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPT  180 (382)
T ss_pred             HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCC
Confidence            9999998999888888877  357888899999999999999999999999999999999988765444333 2333343


Q ss_pred             ccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHH
Q 011369          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (487)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (487)
                      ..+.    +++++..                                          ++..+++++++|+|.++...+..
T Consensus       181 ~~~~----~~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~~~~~~~  214 (382)
T PRK11128        181 IMPQ----GESRQQE------------------------------------------SAGWPAWKALLKEPTVWRFLLCV  214 (382)
T ss_pred             CCCc----ccccccc------------------------------------------ccccchHHHHHcChhHHHHHHHH
Confidence            2110    0000000                                          00012456788999998887777


Q ss_pred             HHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 011369          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (487)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (487)
                      ++..........+.|.|+++ .|.+.... .+..+..+..++..++.+++.||++++     +.+..+.+...+..+...
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~~  288 (382)
T PRK11128        215 SLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLMG  288 (382)
T ss_pred             HHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHH
Confidence            77666666667777888865 56665444 333445567777788888999999888     666666666666555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      ..++.+..++..++.+++.+...+....+..+. +++++++..+..+...+..|..+||.+.|.+.|++
T Consensus       289 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        289 STTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566777677777777877776666666655554 56667888888654556677789999999998863

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=1.3e-28  Score=266.70  Aligned_cols=329  Identities=13%  Similarity=0.009  Sum_probs=237.2

Q ss_pred             ccccccccCc-cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehh---HHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          107 GIQGDFKLNN-FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       107 ~i~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      .+.++.+.+. ...++..+++.+++.++++++|+++||+|||+++..   +.++..+..+.+...+|+++++++|+++|+
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi  120 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI  120 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444444433 457888899999999999999999999999997533   223333333444445899999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      +.+...|+..+++.+++|+++|++++|+.+++.++|.++||++++++....+|++.|+..++..++. ++..+..|+...
T Consensus       121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  199 (1140)
T PRK06814        121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGN  199 (1140)
T ss_pred             HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999995554444443 333344444221


Q ss_pred             CCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (487)
                      .....+ .+.                                         ....+....++.+.+++.++...+..+..
T Consensus       200 ~~~~~~-~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1140)
T PRK06814        200 AAPDLK-IDR-----------------------------------------NIIRSTITLLKYAKADKRIWLAILGISWF  237 (1140)
T ss_pred             CCCCCe-ecc-----------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            100000 000                                         00011224567778899999988887777


Q ss_pred             Hhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH--
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  419 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (487)
                      .+....+..++|.|+++.++.+.... .+.+...++.++|.++.|++.++..++     +.+..+.++..+..+.+..  
T Consensus       238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~  312 (1140)
T PRK06814        238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL-----LYVPIGALLMGLFGLDLAFAS  312 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----eeehHHHHHHHHHHHHHHhcc
Confidence            77777777899999998888876655 555667788899999999999876655     2222222222222211111  


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceee
Q 011369          420 ------------------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (487)
Q Consensus       420 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g  481 (487)
                                        ..+.+.+++..++.+++.+...++..+++.+..|++.+|+++|+. .+.+.+|..+++.+.|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~-~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        313 SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAAN-NVLNAAFMVAGTIILA  391 (1140)
T ss_pred             cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHH-HHHHHHHHHHHHHHHH
Confidence                              144555666677778888877778888999999999999999997 5567777788888877


Q ss_pred             eee
Q 011369          482 VLQ  484 (487)
Q Consensus       482 ~l~  484 (487)
                      .+.
T Consensus       392 ~l~  394 (1140)
T PRK06814        392 LLQ  394 (1140)
T ss_pred             HHH
Confidence            765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.6e-28  Score=216.01  Aligned_cols=326  Identities=16%  Similarity=0.151  Sum_probs=271.2

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh---cchhHHHHHHHHHHhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVG  181 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~l~~~r~l~G  181 (487)
                      +|++++.|+++..|.+++..+++.++.+.+++.|++.+|+|+|+.+++|+.++++++.+..   ...++..++++-++.|
T Consensus        36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila  115 (422)
T COG0738          36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA  115 (422)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999999999999999984   6678999999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-------------------cchHHHHHHH
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWGE  242 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------------------~~wr~~f~~~  242 (487)
                      .|.+...++++.++....++++-.+.+++.+..+++|.+++|++++.+..+                   -.||++|.+.
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~  195 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL  195 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999998999999999999999999999999988762                   2488899998


Q ss_pred             HHHHHHHHHHHhhcc-ccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhH
Q 011369          243 AILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  321 (487)
Q Consensus       243 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (487)
                      +....+..+...... |+....     .++..                                         +..+  .
T Consensus       196 ~~~lvll~v~~~~~k~p~~~~~-----~~~~~-----------------------------------------~~~~--~  227 (422)
T COG0738         196 AGLLVLLAVLILLSKLPDLQVA-----APSLG-----------------------------------------ASGS--A  227 (422)
T ss_pred             HHHHHHHHHHHHhccCCcCCcc-----ccccc-----------------------------------------cccc--c
Confidence            887766666555443 331111     00000                                         0000  1


Q ss_pred             HHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhh
Q 011369          322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  400 (487)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  400 (487)
                      ...+++++|.++...+..+++.........|++.|+.+..+.+..+. ...+..+.+.++|++++.++..|+...     
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-----  302 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-----  302 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----
Confidence            35678899999999999999999999999999999999778777666 677788899999999999999999888     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcccee
Q 011369          401 KLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  480 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~  480 (487)
                      +.+....++..+.++.....++.+ .+....+.+++.+..+|.+.....+.++ ++...+.++  ..+..+|+++-|++.
T Consensus       303 k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~--l~maivGGAiiP~l~  378 (422)
T COG0738         303 KYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGL--LVMAIVGGAIIPPLQ  378 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccccee--eeeheecchHHHHHH
Confidence            778877777777777777777744 4455667788899999999999999998 555566655  356777889999999


Q ss_pred             eeeeccC
Q 011369          481 GVLQVCL  487 (487)
Q Consensus       481 g~l~~~~  487 (487)
                      |++.|+.
T Consensus       379 G~i~d~~  385 (422)
T COG0738         379 GVIADMF  385 (422)
T ss_pred             HHHHHhh
Confidence            9998863

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=5.3e-28  Score=263.13  Aligned_cols=330  Identities=12%  Similarity=0.026  Sum_probs=237.2

Q ss_pred             CccccccccCc--cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hcchhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~  180 (487)
                      +.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.   ..+++++.++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  113 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL  113 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            44555566543  347899999999999999999999999999999999887765555543   4457899999999999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc---------cchHHHHHHHHHHHHHHHH
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~wr~~f~~~~~~~~~~~~  251 (487)
                      |++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++...         .+|++.+.+..+...+..+
T Consensus       114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1146)
T PRK08633        114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL  193 (1146)
T ss_pred             HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998865         2355555554444444444


Q ss_pred             HHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchh
Q 011369          252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  331 (487)
Q Consensus       252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (487)
                      +..+..|+.+......++.+..                                        ....+....++.+++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~  233 (1146)
T PRK08633        194 IFAYRLPKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLRSDRV  233 (1146)
T ss_pred             HHHhcCcCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHhcCcH
Confidence            4444445533221110000000                                        001122244566778888


Q ss_pred             HHHHHHHHHHHHhhheeeeecccceeeeccccccc-ce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHH
Q 011369          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (487)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (487)
                      ++...+..++.......+..++|.|+++.++.+.. .. .+.+...++.+++.++.+++.||++++     ..+.++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~~~~~  308 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPLGALG  308 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhHHHHH
Confidence            88777766666666666677889998888888765 44 444566677888999999999998877     455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceee
Q 011369          410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (487)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g  481 (487)
                      .++..+++....+.+..++..++.+++.+...++...++.+..|++.||+++|+. .....+|.++++.+.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~-~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        309 LALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAAN-NFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHH-HHHHHHHHHHHHHHHH
Confidence            5555555555556666667777778888777777788888889999999999997 4455556555555544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=1e-27  Score=234.63  Aligned_cols=328  Identities=13%  Similarity=0.103  Sum_probs=223.8

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-----CCCeE-ehhHHHHHHHHHHHhhcc---hhHHHHHH
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAI  175 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a---~~~~~l~~  175 (487)
                      +|...++.|.+..+++.+ +.....+ ++.+++|+++||+     |||+. ++++.++.+++..++++.   ++++.+.+
T Consensus        35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~  112 (491)
T PRK11010         35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA  112 (491)
T ss_pred             HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            377788889999899887 4444444 6899999999999     99986 667777777777777665   47889999


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHh
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      .+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..|||.+|++.+++.++..+..+
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988 57999999999988776655544


Q ss_pred             hccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHH
Q 011369          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (487)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (487)
                      + .||+++..   ++++..                                        +  .+..+++++.++++..+.
T Consensus       193 ~-~~e~~~~~---~~~~~~----------------------------------------~--~~~~~~l~~~~~~~~~~~  226 (491)
T PRK11010        193 L-APEPTDTI---PVPKTL----------------------------------------E--QAVVAPLRDFFGRNNAWL  226 (491)
T ss_pred             h-cCCCcccc---ccccch----------------------------------------h--hhHHHHHHHHHcCcCHHH
Confidence            4 45532110   000000                                        0  000123445566666665


Q ss_pred             HHHHHHHHHhhheeeeecccceeeecccccccce-eee-ceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHH
Q 011369          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (487)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (487)
                      ..+..++..........+.+.|+.+..|.+..+. ... ....++.+++.+++|+++||+++|     +.+....++.++
T Consensus       227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----~~l~i~~~l~~l  301 (491)
T PRK11010        227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----RALMIFGILQGV  301 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHH
Confidence            5555455545544455667777766678877666 332 344568889999999999999987     444433333232


Q ss_pred             HHHH---HHHH-HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          413 SCLT---AFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       413 ~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+.   .... ++.+......++..++.+...+.......+..+++.+++..|+. +....+|.++++.+.|++.|.
T Consensus       302 ~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~-~s~~~lg~~~~~~~~G~l~~~  378 (491)
T PRK11010        302 SNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALL-SALSAVGRVYVGPVAGWFVEA  378 (491)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            2211   1111 23333333333323233333333455566677778889999987 445566767777788888774

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=7.4e-28  Score=211.69  Aligned_cols=342  Identities=13%  Similarity=0.029  Sum_probs=221.3

Q ss_pred             cCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       114 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      .+....|.+.|.|++...+.++.+|.++||+|||+++++|++..++...+.+.+.||..++++|++.|+..| ...+..+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence            445567999999999999999999999999999999999999999999999999999777778999999999 6677999


Q ss_pred             hhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc---ccchHHHHHHHHH----HHHHHHHHHhhccccccCCCCC
Q 011369          194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAI----LMLPFAVLAFVIKPLQLKGFAP  266 (487)
Q Consensus       194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~~wr~~f~~~~~----~~~~~~~~~~~~~p~~~~~~~~  266 (487)
                      +++|.+++|+|++.++.+....++|.++||.+|+++..   ..| +.+|.....    +...-.....++.||+.+.+.+
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~  222 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR  222 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence            99999999999999999999999999999999999987   222 222222222    2222123344455887654433


Q ss_pred             CCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhh
Q 011369          267 AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI  346 (487)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (487)
                      .++..... +        ...+++......   .             .......++++..........+.+..+.+...+
T Consensus       223 ~~~~~~~~-~--------~~~~~~~~~~~~---~-------------~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~  277 (451)
T KOG2615|consen  223 NDEHSTLQ-E--------AADDRLALLKFA---R-------------IFKVAALRNPPLLDFISVLRIFGLHYFLYLELF  277 (451)
T ss_pred             cccccchh-h--------hhhhhhhhcchh---h-------------hhhhhhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence            31111100 0        000000000000   0             000000011110000111222333444455555


Q ss_pred             eeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          347 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  425 (487)
Q Consensus       347 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (487)
                      ..+.++.+.+..+.+++++.+. .+.+..++.   +.++.+.+..+..+.+......+......+.-..++.........
T Consensus       278 s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~---m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~  354 (451)
T KOG2615|consen  278 SGLENTVLFLTHGRFGYSSMQQGKVLSTTGLL---MLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVV  354 (451)
T ss_pred             HHHHhhHHHhhcCccCCChhhheeeeehhhHH---HHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchh
Confidence            5555555656567788876555 444444444   444444444444443211113344444444444444444555566


Q ss_pred             HHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          426 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.....+..+......+.+..++....|+++||+.+|+. .....++-++||.+.|.+..+
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~-~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIF-RSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHhhhhhhheeEEE
Confidence            677777777777788888888999999999999999997 777788889999999888754

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.3e-27  Score=220.36  Aligned_cols=334  Identities=15%  Similarity=0.159  Sum_probs=226.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 011369          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFI  195 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~g~g~~~~~~~~~i  195 (487)
                      .+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.++..+   ++++++++++|++.|+..|......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            467788999999999999999999999999999999888887776665   57899999999999999999999999999


Q ss_pred             hhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH--hhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccch
Q 011369          196 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG--VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  273 (487)
Q Consensus       196 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~--~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  273 (487)
                      .|..|++.||....+.+.+..+|.+++..++.  .+.+.-.|++.+.+..+++++..+.. .+.||+|++.-..+.+++.
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999987773  34455679999999988876665554 4558888765332111111


Q ss_pred             hhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecc
Q 011369          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (487)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (487)
                      .++.. +.....+++++..++..++.++++......    ....+.+++.  -+|.+......+....+..+.+.+..|.
T Consensus       221 A~~sl-~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~----~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Ys  293 (485)
T KOG0569|consen  221 ARKAL-KFYRGKEDVEAEIEEMLREIEEEELEKKKQ----ISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYS  293 (485)
T ss_pred             HHHHH-HHHhCCCcchhHHHHHHHHHHHhccccccC----CcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHH
Confidence            11100 111111111111111111111111110000    1111111111  1333444555566666777788888888


Q ss_pred             cceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH----HHH--H--
Q 011369          354 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL--Y--  424 (487)
Q Consensus       354 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~--  424 (487)
                      ..++++ .|++...+ ......++...+.++++.++.||+|||     ++++.+..++.+..+++...    +..  |  
T Consensus       294 t~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~  367 (485)
T KOG0569|consen  294 TSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFLSNSFGSWLS  367 (485)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            888877 45666555 555667788899999999999999999     78877777777666554432    111  1  


Q ss_pred             -HHHHHHHHHHHHHhccCCCe-eEEEEeecCCCchhHHHHHHHH
Q 011369          425 -GFLALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTV  466 (487)
Q Consensus       425 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~g~~~~  466 (487)
                       ..+++.++..++++.+.+++ ..+..|.+|++.|+.+.++...
T Consensus       368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~  411 (485)
T KOG0569|consen  368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATA  411 (485)
T ss_pred             HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHH
Confidence             23455566666667666666 4456666777999999998733

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=2.8e-26  Score=221.02  Aligned_cols=369  Identities=12%  Similarity=0.060  Sum_probs=240.3

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      ++.+.+|+|- .....|+.+...++.+++.++.|+++|.||||++++.+.++..+|+++++.++|...++++..+.|+|.
T Consensus        67 l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga  145 (599)
T PF06609_consen   67 LPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA  145 (599)
T ss_pred             HHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence            3778999995 468899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc-cccccCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKG  263 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~  263 (487)
                      |.... ....++|..|.|.|+...++...........++.++..+..+.+|||.|++..+...+.+++.+++ .|++.+.
T Consensus       146 G~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~  224 (599)
T PF06609_consen  146 GVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQ  224 (599)
T ss_pred             HHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            86664 566689999999999888877777666667888888888877899999999998877665554433 3432211


Q ss_pred             CCCCCcc-cchhhc-ccc---------------cCcccCCCcccccccchhhhhhhhhccccccchhhhhh--hhhHHHH
Q 011369          264 FAPAESG-KAQVVA-SVS---------------EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS--QFSQDTK  324 (487)
Q Consensus       264 ~~~~~~~-~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  324 (487)
                      .+.++.. ++..++ +..               -.........+............-.- ...-..++...  +..--+.
T Consensus       225 ~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~-Lv~F~~wE~~~~~~~Pl~P~  303 (599)
T PF06609_consen  225 LHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL-LVAFVVWEWFGAPKDPLFPH  303 (599)
T ss_pred             hccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH-HHHHHHhhhhccCCCCcCCH
Confidence            1111111 110000 000               00000000000000000000000000 00000111111  1112234


Q ss_pred             hhhcc-hhHHHHHHHHHHHHhhheeeeecccceeeeccccccc---ce-eeeceeecccchhhhhhhhhHhhhcccchhh
Q 011369          325 VLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---DM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  399 (487)
Q Consensus       325 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  399 (487)
                      +++++ |.+...++..+.....++....+.|......++.+..   .. ........+..+|.++.+.+..++++-|   
T Consensus       304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K---  380 (599)
T PF06609_consen  304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK---  380 (599)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh---
Confidence            57776 5566666676777777777777888877777766543   22 3334455667778888888888887553   


Q ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcc
Q 011369          400 FKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                       ..++.+.++..+++..+..  .++....+.+.++.+++.+....+....+.-..|+++-+++.|+. ...+.+|+.+|.
T Consensus       381 -w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~-~s~R~~GGsIg~  458 (599)
T PF06609_consen  381 -WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT-GSIRSIGGSIGY  458 (599)
T ss_pred             -HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH-HHHHHHhhHHHH
Confidence             3444454444443333322  234444566677888888877777777778889999999999997 667777777766


Q ss_pred             ceee
Q 011369          478 PLVG  481 (487)
Q Consensus       478 ~~~g  481 (487)
                      .+..
T Consensus       459 aIy~  462 (599)
T PF06609_consen  459 AIYN  462 (599)
T ss_pred             HHHH
Confidence            5544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=1.9e-26  Score=213.19  Aligned_cols=345  Identities=10%  Similarity=0.016  Sum_probs=233.2

Q ss_pred             CccccccccCccc-cchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQ-DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.+|+|+|+.| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE  129 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM  129 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHhhccccccC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI--LMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~--~~~~~~~~~~~~~p~~~~  262 (487)
                      |... +...++..|+|+++|+++.++..++..+|.++++++++. ...+|||+.+.+.-+  .+..++++..+++|...+
T Consensus       130 A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       130 AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            9999 999999999999999999999999999999999999999 446799976555422  223333444444453222


Q ss_pred             CC--CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          263 GF--APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       263 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      ..  ++.++.+..    ...+.+.....+.       .   ...+ ..........+..+.+++...+|+.++.-.+-+.
T Consensus       208 sl~f~~~~~~~~~----~~~~~~~~~~~~~-------~---~~~~-~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa  272 (511)
T TIGR00806       208 SLFFNRLEDVRGA----LPCELDQMVPGPG-------G---KLED-YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWV  272 (511)
T ss_pred             hhhhccccccccc----cccccccCCCCCc-------c---ccch-hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence            11  111000000    0000000000000       0   0000 0000011233556677888888888777777776


Q ss_pred             HHHhhheeeeecccceeeeccccccc-ceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (487)
                      +...+++-+.+|....-++....++. .-..-++..+.+.+..+..|++-.++.+..   ...+.+..++.+..+++...
T Consensus       273 ~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~---~l~l~v~s~~~~gll~~m~~  349 (511)
T TIGR00806       273 FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS---KLLIAVVSAIQAGLVFWMSQ  349 (511)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH---HHHHHHHHHHHHHHhhhhhc
Confidence            66666666665554444333221111 112223444556667777777754442211   13444455555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHh
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (487)
                      .++.|...+...++...+....+....-++..+..+.-|...|++++..-.
T Consensus       350 t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~  400 (511)
T TIGR00806       350 SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATA  400 (511)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHH
Confidence            778888888888888888877777777777777777778888886443333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=2.6e-27  Score=229.03  Aligned_cols=332  Identities=16%  Similarity=0.056  Sum_probs=210.6

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh---cch-----hHHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSF-----DFWSIAICR  177 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~-----~~~~l~~~r  177 (487)
                      ..+.+++|+++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++.....   .++     .+...++++
T Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (420)
T PRK09528         35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG  114 (420)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677999999999999999999999999999999999999999887666555433221   111     111122333


Q ss_pred             HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       178 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      ++.|.+.....+....+..+.  .+++++.++......++|..+++++++.+.+ .+|+++|++.+++.++..++.++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        115 IYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence            444433333333333333222  2467778899999999999999999998876 4899999999888777666655554


Q ss_pred             ccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHH
Q 011369          258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (487)
Q Consensus       258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (487)
                      |+++++....+++++                                         ++.+...++.++.+|+|.++...+
T Consensus       192 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~~~~l~l  230 (420)
T PRK09528        192 PDAPSTAKVANALGA-----------------------------------------NASAVSLKDALALLKLPKFWFLVL  230 (420)
T ss_pred             ccccchhhhccchhc-----------------------------------------ccccccHHHHHHHccCCCeEeehH
Confidence            442111000000000                                         000000123445677887766555


Q ss_pred             HHHHHHhhheeeeecccceeeecc---cccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHH
Q 011369          338 GYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (487)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (487)
                      ..+...........+.|.|+.+..   +.+.... .+.++..+..+++.++.|++.||+++|     +.+..+..+..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~l~~~~  305 (420)
T PRK09528        231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----NALLLAGTIMAVR  305 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhhHHHHHHHHHH
Confidence            444443333334445666665433   2222222 333445566778999999999999998     6666655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+....++.+..+....+.++..+...+....+..+..|++.+++..+...+....+|.+++|.+.|++.|.
T Consensus       306 ~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~  378 (420)
T PRK09528        306 IIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS  378 (420)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555566655555666666665555555667778888888888766532455667889999999998875

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.94  E-value=4.2e-27  Score=225.86  Aligned_cols=331  Identities=12%  Similarity=0.031  Sum_probs=220.3

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hcc-----hhHHHHHHHHH
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-----FDFWSIAICRM  178 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-----~~~~~l~~~r~  178 (487)
                      .+.+++|.++.+.+++.+++.++..++++++|+++||+|||+.++.++...+++....   .+.     +.+..+++.|+
T Consensus        28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3566799999999999999999999999999999999999999988777665544322   122     22344577789


Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       179 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      +.|++.+...+....+..|..+  +++..++......++|..+|+++++.+.+ .+||++|++.+++.++..++.++..|
T Consensus       108 ~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  184 (396)
T TIGR00882       108 YLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKP  184 (396)
T ss_pred             HHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999888888888888777543  34567788888889999999999998865 59999999998888777666555444


Q ss_pred             cccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHH
Q 011369          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (487)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (487)
                      +.+++    ++.++.   .+      .                            ++..+..++.++++|+|.++...+.
T Consensus       185 ~~~~~----~~~~~~---~~------~----------------------------~~~~~~~~~~~~~l~~~~~~~~~l~  223 (396)
T TIGR00882       185 KAPSS----ATVANA---LG------A----------------------------NASAFSLKLALELFRQRKFWMFVLY  223 (396)
T ss_pred             CCchh----hhhhcc---cc------c----------------------------ccCCCCHHHHHHHHcCCcHHHHHHH
Confidence            42111    000000   00      0                            0000001345667888888776666


Q ss_pred             HHHHHhhheeeeecccceeeecc---cccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHH
Q 011369          339 YIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (487)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  414 (487)
                      .+.....+.....+.|.|+++..   +.+.... ...++..+..+++.+..+++.||+++|     +.+.++..+..+..
T Consensus       224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----~~l~~~~~l~~l~~  298 (396)
T TIGR00882       224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----NALLIAGTIMSVRI  298 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Confidence            55544444444445666665543   2222222 233444566777888999999999998     66666665555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ......++.+..+...++.+.+..........+..+..+++.++++.+........+|.+++|.+.|++.|.
T Consensus       299 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~  370 (396)
T TIGR00882       299 IGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS  370 (396)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            444445555655555666665554433333444555667777777666633456777889999999998875

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.94  E-value=3.6e-30  Score=251.84  Aligned_cols=343  Identities=18%  Similarity=0.218  Sum_probs=230.4

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch---hHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       117 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      .+.+++.+...+|..+|++++|.++||+|||+.++++.++..+++++.++++   |++.+.++|+++|++.|...+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3568899999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             hhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcc
Q 011369          194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (487)
Q Consensus       194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (487)
                      ++.|..|+++|++..++.+.+..+|.+++..++..+...   .+||..+++.++++++..+.. +..||+|++...+++.
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~  204 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRD  204 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceecccccc
Confidence            999999999999999999999999999998887665443   349999999998887655544 5568888776544433


Q ss_pred             cchhhcccccCcccCC-CcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcc-----hhHHHHHHHHHHHHh
Q 011369          271 KAQVVASVSEGSEASN-LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-----KVYVVNVLGYIAYNF  344 (487)
Q Consensus       271 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  344 (487)
                      ++..+..+.  ..+.+ .+++..+..++.+...+.+               ..+++++++     +.+....+..+....
T Consensus       205 ~~A~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (451)
T PF00083_consen  205 EEAEKVLRK--LRGKEIEDEEIEEIKAEKKESQESK---------------ASWRDLFRNKKYRKRLLIALLLQFFQQFS  267 (451)
T ss_pred             ccccccccc--ccccccccccccccccccccccccc---------------eeeeecccccccccccccccccccccccc
Confidence            322111111  11111 1111111111111000000               112222222     233333333333344


Q ss_pred             hheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH-----H
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----C  419 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  419 (487)
                      +......+.|.++++ .+.+.. .....+..+...++.+++.++.||+|||     +.++.+....+++.+...     .
T Consensus       268 g~~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~  340 (451)
T PF00083_consen  268 GINFIFYYSPSIFEN-AGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLG  340 (451)
T ss_pred             ccccccccccccccc-cccccc-cccccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence            445566666766665 444433 3333455577778888888999999999     666666655555544432     1


Q ss_pred             HHH----HHHHHHHHHHHHHHHhccCCCe-eEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          420 LSS----LYGFLALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       420 ~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      .++    ....+.+..+.....+.++.+. ..+..|.+|++.|+++.|++ ...+.++++++|.+...+.+
T Consensus       341 ~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~-~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  341 VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS-YAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             cccccccccccceeeeeccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            122    2223333333434444444444 46678889889999999997 55666777888887766654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.7e-26  Score=199.51  Aligned_cols=324  Identities=14%  Similarity=0.069  Sum_probs=252.6

Q ss_pred             cCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.++++++|+|+|.+..|+++++..+..++.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~  111 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA  111 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence            56799999999999999999999999999999999999999999999999999999999999887 88899999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      |.+...+..+.++.+.||+ +-+..+++|....++|..+++.+.-.+.++. +||....+-+.++++.+++.+   |...
T Consensus       112 gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~  187 (395)
T COG2807         112 GIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQAL  187 (395)
T ss_pred             hHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcc
Confidence            9999999999999999994 8899999999999999999999998888877 799999999888776655443   4322


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                      +++......+.                                                .+-..++|+|.-|...+.+.+
T Consensus       188 r~~~~~~~~~~------------------------------------------------~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         188 REQAASIATKL------------------------------------------------VSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             ccccccccccc------------------------------------------------ccccccccCchhHHHHHHHHh
Confidence            22111111110                                                112346899999999999999


Q ss_pred             HHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011369          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (487)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (487)
                      +.+.+|....|+|.++.| .|++..+. .+.++..+..++..+....+.+|.+.++    +..+....+..+..+.+...
T Consensus       220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~~~~~~l~G~~G~~~~  294 (395)
T COG2807         220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVLALLLMLVGLVGLLLA  294 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998 46776666 6667788899999999999999876654    33333333333333333222


Q ss_pred             -HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC-CchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          421 -SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       421 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                       .+.+...  .++.|++.+..++.....+.....+ +..+.-.|+.+...+.+ +..||.++|++.|.+
T Consensus       295 P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYll-Aa~GP~l~G~lhDa~  360 (395)
T COG2807         295 PGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLL-AAFGPWLFGFLHDAT  360 (395)
T ss_pred             hhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHH-HhhhhhhHhHHHHhc
Confidence             2222222  4677777788888777766666655 56666666654444444 458999999999864

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=3.7e-26  Score=221.52  Aligned_cols=328  Identities=16%  Similarity=0.135  Sum_probs=251.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~  182 (487)
                      +..+..-|+..++++..+..+...+.++++|.++||++||++++.+-++..+..+..++.     .+.+.+++.-++.|+
T Consensus        36 lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~  115 (524)
T PF05977_consen   36 LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI  115 (524)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            455667788999999999999999999999999999999999999988876655544432     478999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      +.+...|+..+++.|.+|+++...++++.+...++..++||.++|.+....|-.++|.+.++..++..+....+.++.. 
T Consensus       116 ~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~-  194 (524)
T PF05977_consen  116 GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP-  194 (524)
T ss_pred             HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-
Confidence            9999999999999999999999999999999999999999999999999889999999998766554443333322210 


Q ss_pred             CCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (487)
                         +++..++                                         ....+....++.+.++|.+....+..+..
T Consensus       195 ---~~~~~~e-----------------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~  230 (524)
T PF05977_consen  195 ---PSSLPRE-----------------------------------------RFFSALREGLRYVRSSPPLRSVLLRSFLF  230 (524)
T ss_pred             ---ccccchh-----------------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHH
Confidence               0000000                                         11123334556666677766665555555


Q ss_pred             Hhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011369          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (487)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (487)
                      ++....+...+|.+.++..+.+.... .+.+..++++++|.++.+++.+|++++     +++..+.+..++..+.+...+
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal~~  305 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLALSP  305 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhcch
Confidence            55555556678999888888776666 555677788888888888877777766     566666666676666667777


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.+...+.+++.|++.........+...+.+|++.||+++++. .+....+..+|..+.|.+.|+
T Consensus       306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~-~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIY-QMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            7787778888888888877777788889999999999999997 556666777888888887764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.93  E-value=6.2e-26  Score=221.16  Aligned_cols=330  Identities=14%  Similarity=0.097  Sum_probs=237.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCCe-EehhHHHHHHHHHHHhhcchh------HHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA  174 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (487)
                      +.+.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      +..++
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            56778899999999999999999999999999999998    67744 677788888888887777654      46678


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcC-CCCchhHHHHHHHhhhhhhhhhHHHHHHhhc-------cccchHHHHHHHHHHH
Q 011369          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM  246 (487)
Q Consensus       175 ~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~~wr~~f~~~~~~~  246 (487)
                      +.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+||+.+++.+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~  183 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG  183 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence            8889999999988888888999987 4689999999999888888877766655443       2468999999999988


Q ss_pred             HHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhh
Q 011369          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (487)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (487)
                      ++..++.++..||++++.  +++++.                                           ..+..+.++.+
T Consensus       184 ~~~~~~~~~~~~e~~~~~--~~~~~~-------------------------------------------~~~~~~~~~~l  218 (437)
T TIGR00792       184 VVSLIICFFGTKERYSEI--PKNIEK-------------------------------------------KLSLKQIFKAL  218 (437)
T ss_pred             HHHHHHHHcCCEecCCCC--Cccccc-------------------------------------------CCCHHHHHHHH
Confidence            877776666666532110  000000                                           00112346677


Q ss_pred             hcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHH
Q 011369          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (487)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (487)
                      +++|.++...+..++...+......+.+.|.+...+.+.....+..+..++.+++.++.+++.||+|+|     +.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~  293 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGG  293 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHH
Confidence            889998888777777766666555566666666555332222344455688889999999999999988     566666


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-------CCchhHHHHHHHHHHHhhcCCCccc
Q 011369          407 TFLGAISCLTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      ..+.++..+..... ++.+..++..++.+++.+...+....+..+..+       ++.+|.+.|+. +....+|..+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~g~~lg~~  372 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR-TFVRKLGQALAGF  372 (437)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH-HHHHHHHHHHHHH
Confidence            55555544444332 344455555666667766666666666666543       46789999997 5567778889999


Q ss_pred             eeeeeecc
Q 011369          479 LVGVLQVC  486 (487)
Q Consensus       479 ~~g~l~~~  486 (487)
                      +.|++.|.
T Consensus       373 i~g~ll~~  380 (437)
T TIGR00792       373 LVGLILGI  380 (437)
T ss_pred             HHHHHHHH
Confidence            99888764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=8.1e-26  Score=217.22  Aligned_cols=324  Identities=15%  Similarity=0.076  Sum_probs=215.6

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-----CCCe-EehhHHHHHHHHHHHhhcc---hhHHHHHH
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIAI  175 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~a---~~~~~l~~  175 (487)
                      +|.+-++.|+|.+++|++..+...  .+..+++|+++||+     |||| .++++.++.+++..+.++.   ++++.+++
T Consensus        22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~   99 (402)
T PRK11902         22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAG   99 (402)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            477888889999999999777765  59999999999999     8876 6888888888877777776   45788888


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHh
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      ..++.++..+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+. .|||..|++.+++.++..+.. 
T Consensus       100 ~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-  178 (402)
T PRK11902        100 LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-
Confidence            888889999999999999999999999999999999999999999999999988885 599999999988776654443 


Q ss_pred             hccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHH
Q 011369          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (487)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (487)
                      +..||+++...  + +++.                                          .++..+++++++++|.++.
T Consensus       179 ~~~~e~~~~~~--~-~~~~------------------------------------------~~~~~~~~~~l~~~~~~~~  213 (402)
T PRK11902        179 LWAPEPEVPAR--P-PRSL------------------------------------------GEAVVGPLRDFFSRRGAWA  213 (402)
T ss_pred             HhcCCCccccc--c-cchh------------------------------------------HHHHHHHHHHHHhCcCHHH
Confidence            34455321100  0 0000                                          0011234667788888877


Q ss_pred             HHHHHHHHHhhheeeeecccceeeecccccccce-eeecee-ecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHH
Q 011369          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVT-IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (487)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (487)
                      ..+..++..........+.+.++.+..|.++... .+.... .++.+++.++++++.||+++|     +.+.....+..+
T Consensus       214 ~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-----~~l~~~~~~~~l  288 (402)
T PRK11902        214 LLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-----RSLMLFGVLQAV  288 (402)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHH
Confidence            6665555443322222334445555567776555 222222 345788999999999999987     444444433333


Q ss_pred             HHHHH---HHH-HHHHHHHHHHH----HHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          413 SCLTA---FCL-SSLYGFLALFT----VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       413 ~~~~~---~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                      ..+..   ... ++.+..+....    ..++..+........++.+..|.+.++    .. .....++.+.++.+.|++.
T Consensus       289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~G~l~  363 (402)
T PRK11902        289 SNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LL-SALASVGRVYVGPTSGYLV  363 (402)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HH-HHHHHHHHHHHHHHHHHHH
Confidence            22221   122 23343333332    344445555555666777777655544    32 2223334443445677776


Q ss_pred             cc
Q 011369          485 VC  486 (487)
Q Consensus       485 ~~  486 (487)
                      |+
T Consensus       364 ~~  365 (402)
T PRK11902        364 EA  365 (402)
T ss_pred             HH
Confidence            64

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1e-25  Score=223.90  Aligned_cols=345  Identities=14%  Similarity=0.104  Sum_probs=233.3

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      .+.+..+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.+...
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            35667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  268 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  268 (487)
                      .....++.|++++++|+.+..+ ......+..++++.++++..  +||+.+++..+++++..+. ++++||++++...+.
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKG  265 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcC
Confidence            9999999999999999999999 77777777888888888887  7999999999998877666 666678877654444


Q ss_pred             cccchhhcccc-cCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHH----H
Q 011369          269 SGKAQVVASVS-EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY----N  343 (487)
Q Consensus       269 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  343 (487)
                      +.++..+..+. .+..  ....+..+...........+.        ...+....+..+++.+++....+...+.    .
T Consensus       266 ~~~~a~~~l~~~a~~n--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~  335 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLN--GRKLSVKELLRLELLLRPLKL--------LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS  335 (521)
T ss_pred             chHHHHHHHHHHHhhc--CCCCCcHHHHHHHHHhhHhhh--------hccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh
Confidence            33222211111 0000  000000000000000000000        0000001233445554333332222222    2


Q ss_pred             hhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          344 FVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  423 (487)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (487)
                      ..+++.....    .+ .+.+.  .....+.+.....+....+...|++|||     .....+..+..++++........
T Consensus       336 ~~y~gl~~~~----~~-lg~~~--~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~  403 (521)
T KOG0255|consen  336 LVYYGLSLNV----SG-LGGNI--YLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDD  403 (521)
T ss_pred             HHHHhhhhhh----hh-cCchH--HHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhcc
Confidence            2222222221    11 22221  1111222335566777778999999888     77777777777777666655432


Q ss_pred             H---HHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcccee
Q 011369          424 Y---GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  480 (487)
Q Consensus       424 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~  480 (487)
                      .   ...+...+..++.+..+...+.+..+.+|+..|+.+.+.+ .....+|.+++|.+.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~-~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  404 LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAI-SAAARLGSILAPLFP  462 (521)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            2   3556666666777777777788899999999999999997 778888888888764

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=1.7e-25  Score=217.70  Aligned_cols=367  Identities=14%  Similarity=0.052  Sum_probs=225.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcchhHHH-HHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~-l~~~r~l~G~g  183 (487)
                      ..+.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.+++.++.+.++++++... ++++|+++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            45778899999999999999999999999999999999 99999999999999999999999877554 55899999999


Q ss_pred             hhhhhhhhhhhhhhcCCCC--chhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          184 EASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      .|...+...+++.|.+|++  +|++++++++.+.++|..+||.+++++.+++|||+.|++.++ +++..++.++..++..
T Consensus       119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~  197 (489)
T PRK10207        119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMV  197 (489)
T ss_pred             cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhh
Confidence            9999999999999999877  457899999999999999999999999999999999999654 4444444444444432


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhcccccc-------chhhhhhhhhHHHHhhhcchhHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES-------RFLNQLSQFSQDTKVLLQEKVYVV  334 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  334 (487)
                      ++..++.++++.+..........     -..-.................       .......+. ...++.+|+|.+..
T Consensus       198 ~~~~~~~~~~~~d~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~~~~~r~r~~~~  271 (489)
T PRK10207        198 KDIGSEPDHKPMSFSKLLLVLLG-----SVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKLDKTGRNKMFVA  271 (489)
T ss_pred             cccCCCCCccchhhhhHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            22111110100000000000000     000000000000000000000       000000000 00013445555443


Q ss_pred             HHHH--HHHHHhhheeeeecccceeeecccccccce-----eeeceeecccchhhhhhhhhHhhhcccchh--hhHHHHH
Q 011369          335 NVLG--YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-----MFGGVTIVCGIVGTISGGFILDQMGATISN--AFKLLSA  405 (487)
Q Consensus       335 ~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~  405 (487)
                      ..+.  ....+..+....+.++.+.++..+.+....     .+..+..+..++..++.+++.||+++|+..  ....+.+
T Consensus       272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~  351 (489)
T PRK10207        272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL  351 (489)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence            3322  333344444444566666654222221111     111122244556777788999999888421  0012333


Q ss_pred             HHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCC
Q 011369          406 ATFLGAISCLTA-----FC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       406 ~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      +.++..++.+..     ..     ..+.++.+...++.+++.....++....+.+..|++.+|.++|+. .....+|+.+
T Consensus       352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~-~l~~~ig~~l  430 (489)
T PRK10207        352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW-FLTQAAAFLL  430 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHH
Confidence            333333333211     11     123566677788889999999999999999999999999999996 5555556655


Q ss_pred             cccee
Q 011369          476 SSPLV  480 (487)
Q Consensus       476 ~p~~~  480 (487)
                      |..+.
T Consensus       431 g~~l~  435 (489)
T PRK10207        431 GGYVA  435 (489)
T ss_pred             HHHHH
Confidence            55443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=5.8e-26  Score=218.23  Aligned_cols=323  Identities=11%  Similarity=-0.004  Sum_probs=220.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCC-CeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +.+.+++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.
T Consensus        27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY  106 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999965 77888888888888888999999999999999999988


Q ss_pred             hhhhhhhhhhhh--------hcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          185 ASFISLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       185 g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      +...+...++..        |......|.+..|      .+|.++|+.+++.+.....|+ +|++.++..++..++ .+.
T Consensus       107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~  178 (418)
T TIGR00889       107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALT  178 (418)
T ss_pred             ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-Hhc
Confidence            777766655432        2222234555444      368888888888774433455 455666655554443 344


Q ss_pred             cccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHH
Q 011369          257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (487)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (487)
                      .||.++...+++  ...                                        +  .....+.+.++|+|.++...
T Consensus       179 ~~e~~~~~~~~~--~~~----------------------------------------~--~~~~~~~~~~~k~~~~~~~~  214 (418)
T TIGR00889       179 LPDIPVAKSTAK--MSI----------------------------------------K--VMLGLDAFILFKNKRMAIFF  214 (418)
T ss_pred             CCCCCCCccccc--cCH----------------------------------------H--HHhhhhHHHHhcCCCeeeHH
Confidence            465321100000  000                                        0  00001234567888877776


Q ss_pred             HHHHHHHhhheeeeecccceeeecccccc--------cce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHH
Q 011369          337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSN--------ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (487)
Q Consensus       337 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  407 (487)
                      +..++..........+.|.++++. +.++        ... ...++..+..+++.+..+++.||+|+|     +.+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~  288 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSL  288 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHH
Confidence            666665554444456667777653 3221        122 333455567788899999999999998     6777776


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          408 FLGAISCLTAFCLS----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       408 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      ++..+.........    +.+.+++..++.+++.+...+....++.+..|++.|+++.|+.+...+.+|.++||.+.|++
T Consensus       289 ~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l  368 (418)
T TIGR00889       289 VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM  368 (418)
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666544443322    12334455666777666666666777888999999999999974466777889999999998


Q ss_pred             ecc
Q 011369          484 QVC  486 (487)
Q Consensus       484 ~~~  486 (487)
                      .|+
T Consensus       369 ~~~  371 (418)
T TIGR00889       369 VEK  371 (418)
T ss_pred             HHH
Confidence            875

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=9.4e-25  Score=212.12  Aligned_cols=374  Identities=11%  Similarity=0.021  Sum_probs=246.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc------hhHHHHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRML  179 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~l~~~r~l  179 (487)
                      |.+++++|+|..+++++.++. ....+++++.|+++||+|||++++++.++++++.++++++      ++++.+++.|++
T Consensus        51 ~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l  129 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGL  129 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence            789999999999999998874 4456788889999999999999999999999999999997      689999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh-HHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      .|+|.+...+.....+.+|+| ++||+++|+...+.++|..+ +++..+++.  .+|++.|++.+++.++..++.+++.+
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999999999997 68999999999999999976 555555544  36999999999998888877777663


Q ss_pred             cccCCC---CC---CCcccchhh---ccc--------c------------------------------------------
Q 011369          259 LQLKGF---AP---AESGKAQVV---ASV--------S------------------------------------------  279 (487)
Q Consensus       259 ~~~~~~---~~---~~~~~~~~~---~~~--------~------------------------------------------  279 (487)
                      +.+...   .+   +++.+...+   ...        .                                          
T Consensus       207 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~l  286 (591)
T PTZ00207        207 LPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVL  286 (591)
T ss_pred             CCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            332111   00   011110000   000        0                                          


Q ss_pred             ----c----------CcccC-CCcccccccchhhhhhhhhccccccchhh-hhhhhhHHHHhhhcchhHHHHHHHHHHHH
Q 011369          280 ----E----------GSEAS-NLNDHVSEDISDQASERSIKSIGESRFLN-QLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (487)
Q Consensus       280 ----~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (487)
                          .          ...+. +.+.+..+..+...+....+........+ ...+.-..+.+.+++..+|++...+++..
T Consensus       287 ll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~  366 (591)
T PTZ00207        287 TVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCV  366 (591)
T ss_pred             HHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhh
Confidence                0          00000 00000000000000000000000000000 00111126777888999999999999988


Q ss_pred             hhheeeeecccceeeecccc-ccc--ceeeeceeecccchhhhhhhhhHhhhcccc----hhhhHHHHHHHHHHHHHHHH
Q 011369          344 FVIGAYSYWGPKAGYNIYHM-SNA--DMMFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLT  416 (487)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~~~~~~~~~~~~~  416 (487)
                      .....+...+-++.+...|. ...  ...+.++..+++.+|++.+|.+.....+|+    .++-..+.+..+ +.+..++
T Consensus       367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~ll  445 (591)
T PTZ00207        367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLT  445 (591)
T ss_pred             CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHH
Confidence            88777887788777776455 222  223667888999999999999984444432    222133333333 3333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCc-cceeeeeecc
Q 011369          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQVC  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~-p~~~g~l~~~  486 (487)
                      +...-+...+.+..++.|++.|..++.....+.+.+. ++-|+-..++ ...+-+|..+- -.+.|.++|+
T Consensus       446 l~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~-~~a~pigs~~~n~~l~G~~Yd~  514 (591)
T PTZ00207        446 LFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFC-FLGSVLSAIFLNRLLYGEWYTQ  514 (591)
T ss_pred             HHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHH-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3333222567788888899999999988888888887 8888888776 55555555442 4556666653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=8.1e-25  Score=213.14  Aligned_cols=371  Identities=12%  Similarity=0.041  Sum_probs=226.3

Q ss_pred             cccc--cccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          108 IQGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       108 i~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +.++  +|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.
T Consensus        37 l~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~  116 (475)
T TIGR00924        37 LVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGS  116 (475)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcc
Confidence            4455  89999999999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCc---hhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          185 ASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      |...+...++++|++|+++   |++++++++.+.++|..+||++++.+.+++|||+.|++.++..++.. +.++..++..
T Consensus       117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~  195 (475)
T TIGR00924       117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHML  195 (475)
T ss_pred             ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHccccc
Confidence            9999999999999998764   88899999999999999999999999998999999999886544433 3333333322


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccc----------cchhhhhhhhhHHHHhhhcchh
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGE----------SRFLNQLSQFSQDTKVLLQEKV  331 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  331 (487)
                      ++..+++++.....+........  ................+....+.          ........+...+..+..|...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (475)
T TIGR00924       196 RDIGSVPDPLSGQGKTYGKLLLA--LLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYA  273 (475)
T ss_pred             ccCCCCCCCcchhhhhhHHHHHH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHH
Confidence            21111110000000000000000  00000000000000000000000          0000000000000000012223


Q ss_pred             HHHHHHHHHHHHhhheeeeecccceeeecccccccc-----eeeeceeecccchhhhhhhhhHhhhcccch--hhhHHHH
Q 011369          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATIS--NAFKLLS  404 (487)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~  404 (487)
                      +....+...+....+....+.++.+.++..+.+...     ..+.++..+..++..++..++..|++||..  ....-+.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            344444444445555455555565554432222111     123334444444444444444445554311  1111234


Q ss_pred             HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCC
Q 011369          405 AATFLGAISCLTAFC---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       405 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      ++.++..++......         ..+.++.+...++.+++.....|....++.+..|++.||+.+|+. .....+|..+
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~-~l~~~~g~~l  432 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW-FLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHHHH
Confidence            455555444444332         246777888889999999999999999999999999999999997 5666667766


Q ss_pred             ccceeee
Q 011369          476 SSPLVGV  482 (487)
Q Consensus       476 ~p~~~g~  482 (487)
                      ++.+.+.
T Consensus       433 ~~~~~~~  439 (475)
T TIGR00924       433 GGYLATF  439 (475)
T ss_pred             HHHHHHH
Confidence            6665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=6.3e-23  Score=198.86  Aligned_cols=358  Identities=20%  Similarity=0.342  Sum_probs=276.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----------------
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------------  167 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------------  167 (487)
                      +..+++.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|+++++++++++++-                 
T Consensus       120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            478999999999999999999999999999999999999999999999999999999998761                 


Q ss_pred             ---h------------------------------h-H-HHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHH
Q 011369          168 ---F------------------------------D-F-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY  212 (487)
Q Consensus       168 ---~------------------------------~-~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  212 (487)
                         +                              + . ..++++.++.|+|....++.+.+|+-|.+.+++-...+|++.
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence               0                              0 2 257889999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHhhcccc-------------------chHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccc-
Q 011369          213 MCIPTGVALGYVYGGVVGSHL-------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA-  272 (487)
Q Consensus       213 ~~~~~G~~~g~~~~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-  272 (487)
                      +...+|.++|.++++++...+                   .|..-|++.+.+.++..+..++++ +.+++..++.+.++ 
T Consensus       280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP-k~lp~~~~~~~~~~~  358 (735)
T KOG3626|consen  280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP-KELPKSQKRKRARDL  358 (735)
T ss_pred             HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc-ccCccccccchhhhh
Confidence            999999999999998876321                   277788888888877777766664 43322211100000 


Q ss_pred             hhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeec
Q 011369          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (487)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (487)
                      ...+..        .                ..........+..+++++..+++++||.+...++...+....+.++.+|
T Consensus       359 ~~~k~~--------~----------------~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tF  414 (735)
T KOG3626|consen  359 HVLKTE--------S----------------GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITF  414 (735)
T ss_pred             cccccc--------c----------------ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHh
Confidence            000000        0                0000111111456788889999999999999999999999999999999


Q ss_pred             ccceeeecccccccce--eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH-----------
Q 011369          353 GPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----------  419 (487)
Q Consensus       353 ~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  419 (487)
                      +|.|++++++.+...+  +...+...+..+|.+++|++..|+.-+.+...++.++..++..++....++           
T Consensus       415 lPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~  494 (735)
T KOG3626|consen  415 LPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGV  494 (735)
T ss_pred             hHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccce
Confidence            9999999999987666  333444566778999999999999876544334444444444444333221           


Q ss_pred             --------------------------------------------------------------------HH----------
Q 011369          420 --------------------------------------------------------------------LS----------  421 (487)
Q Consensus       420 --------------------------------------------------------------------~~----------  421 (487)
                                                                                          ..          
T Consensus       495 ~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~  574 (735)
T KOG3626|consen  495 TNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAK  574 (735)
T ss_pred             ecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceee
Confidence                                                                                01          


Q ss_pred             ----------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          422 ----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       422 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                                ....+++.+++..+..+....+.+.++.+.+++++|..++|+..+..+.+|.+-+|++.|+++|.+
T Consensus       575 ~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  575 KGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             cCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence                      023455666667777778888999999999999999999999988999999999999999999963

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.1e-25  Score=201.07  Aligned_cols=384  Identities=14%  Similarity=0.126  Sum_probs=252.2

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccccc--------ccCccccchhhhHHHHHHHHHHH
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVASP  135 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~--------~~s~~~~~~~~s~~~~~~~i~~~  135 (487)
                      .+.+.+...+.+.+.||...++..  .               |-+...+        +.++...+.+..+..+|..+||+
T Consensus        40 fk~i~iAG~GfftDsYDlF~I~lV--t---------------~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl  102 (538)
T KOG0252|consen   40 FKAIIIAGMGFFTDSYDLFSISLV--T---------------KILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQL  102 (538)
T ss_pred             HHHHHHhhhhhcccchhhhhHHHH--H---------------HHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence            345666677788899998888753  1               2222221        24556678899999999999999


Q ss_pred             HHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch-------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHH
Q 011369          136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (487)
Q Consensus       136 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~  208 (487)
                      +.|+++||+|||+++...+++..+++++++++.       -.+++...|++.|+|.|+-+|.+.+..+|...+++||...
T Consensus       103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i  182 (538)
T KOG0252|consen  103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI  182 (538)
T ss_pred             HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence            999999999999999999999999999888753       2678999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhcc-------------c--cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccch
Q 011369          209 SMFYMCIPTGVALGYVYGGVVGS-------------H--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  273 (487)
Q Consensus       209 ~~~~~~~~~G~~~g~~~~~~l~~-------------~--~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  273 (487)
                      +...+..+.|...|.+++-.+..             +  .=||..|.+.++++++.....+.+ ||+.+.....+++.+.
T Consensus       183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M-~Et~~Y~al~~~~~~~  261 (538)
T KOG0252|consen  183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM-PETARYTALVSKKLKQ  261 (538)
T ss_pred             EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC-CcchhHHHHhhcCHhh
Confidence            99988888888888877755431             0  139999999988876665554443 6654432111111010


Q ss_pred             hhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecc
Q 011369          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (487)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (487)
                      ..++..+....         .++.++.. .+....++   .....+.+-+.+. .-+.++..+..+++.-.+++....+.
T Consensus       262 a~~d~~k~~~~---------~~~~~~~~-~~~~~~~~---~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~  327 (538)
T KOG0252|consen  262 AAGDMKKVLSV---------DIEAESTA-ESDVPPPS---NSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQ  327 (538)
T ss_pred             hhhcccccccc---------ccchhhcc-ccCCCCcc---cccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHH
Confidence            00000000000         00000000 00000000   1111111222222 34667778888888888888888887


Q ss_pred             cceeeecccccccc--------e-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 011369          354 PKAGYNIYHMSNAD--------M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--  422 (487)
Q Consensus       354 p~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  422 (487)
                      ..++++..-.+...        + .-..+...+.++|..+...++|++||+     +..+.+.++..+..+.+....+  
T Consensus       328 s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~~~~~y~~~  402 (538)
T KOG0252|consen  328 SVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFVIAGPYNQL  402 (538)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHHHcCCcccc
Confidence            77776532222111        1 111233455666888999999999998     6777777777666666554333  


Q ss_pred             --HHHHHHHHHHHHHHHhccCCCeeEE-EEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeec
Q 011369          423 --LYGFLALFTVGELLVFATQAPVNYV-CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       423 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                        ....+++..+..++....-.....+ -.+.+|.+.|++..|+. ...+-+|+++|...++++.|
T Consensus       403 ~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIs-AA~GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  403 ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGIS-AASGKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHH-HHhccchHHHHHHHhhHhhh
Confidence              2334455555555555444444444 45555569999999997 77888899999888877766

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.90  E-value=1.1e-25  Score=219.05  Aligned_cols=365  Identities=21%  Similarity=0.383  Sum_probs=3.0

Q ss_pred             CCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch----------------
Q 011369          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----------------  168 (487)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----------------  168 (487)
                      +..+++.|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++++++++=+                
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            4889999999999999999999999999999999999998888899999999999999876500                


Q ss_pred             ----------------------------------hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhh
Q 011369          169 ----------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (487)
Q Consensus       169 ----------------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (487)
                                                        -+..++++.++.|+|.+..++.+.+|+-|.+++++-+..+|++.+.
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                              1456789999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHhhccc---------------------c-chHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccc
Q 011369          215 IPTGVALGYVYGGVVGSH---------------------L-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (487)
Q Consensus       215 ~~~G~~~g~~~~~~l~~~---------------------~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (487)
                      ..+|.++|.++++.+.+.                     . .|-.-|++.+++.++.++..+++ |+..+...+.++.++
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~  264 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKE  264 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhh
Confidence            999999999999876531                     1 26666777777766666665555 544333211111100


Q ss_pred             hhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeec
Q 011369          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (487)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (487)
                      ..+...                 ++...+...+........+..+++++..+++++||.+....+..........++.++
T Consensus       265 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  265 SSERKE-----------------EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhcch-----------------hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000                 000000000000001122556788889999999999999999999999999999999


Q ss_pred             ccceeeecccccccce-e-eeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH----------
Q 011369          353 GPKAGYNIYHMSNADM-M-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----------  420 (487)
Q Consensus       353 ~p~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  420 (487)
                      .|.|++.+++.++..+ . ...+...++.+|.+++|++.+|++-+.+...++.++..++..+.....+..          
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv  407 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV  407 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence            9999999999987666 3 334444677899999999999997664433333333333333331111110          


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhH
Q 011369          421 -----------------------------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  459 (487)
Q Consensus       421 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  459 (487)
                                                               .....+++.+++..+..+....+......+.+++++|+.
T Consensus       408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~  487 (539)
T PF03137_consen  408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF  487 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence                                                     012234455556666667778888889999999999999


Q ss_pred             HHHHHHHHHHhhcCCCccceeeeeeccC
Q 011369          460 SMAISTVSIHIFGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       460 ~~g~~~~~~~~~g~~~~p~~~g~l~~~~  487 (487)
                      |.|+.....+.+|.+-||++.|.+.|.+
T Consensus       488 AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  488 ALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------
T ss_pred             hhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            9999988889999999999999999964

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.90  E-value=5.2e-24  Score=204.04  Aligned_cols=327  Identities=10%  Similarity=-0.053  Sum_probs=220.5

Q ss_pred             CCCccccccccCccccchhh--hHHHHHHHHHHHHHHH-hhhhcCCCeEehhHHHHH-HHHHHHhh---cchh-HHHHHH
Q 011369          104 SGSGIQGDFKLNNFQDGVLS--SAFMVGLLVASPIFAS-LAKSHNPFRLIGVGLSVW-TFATAGCG---SSFD-FWSIAI  175 (487)
Q Consensus       104 ~l~~i~~~~~~s~~~~~~~~--s~~~~~~~i~~~~~g~-l~dr~Grr~~l~~~~~~~-~~~~~~~~---~a~~-~~~l~~  175 (487)
                      .+|.+.+|.|.|.+++|++.  ++..+...+.+++++. ..||+||||..++.+.+. +......+   ...+ ..+++.
T Consensus        23 ~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (390)
T TIGR02718        23 ALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVG  102 (390)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence            45889999999999999974  6778888888888855 799999999976665332 21122222   2322 334455


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      .-++.++..+...+....+..|..++++++...+....+..+|.++|+...+++.+++|||..|++.+++.++..+..++
T Consensus       103 ~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       103 LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777787888888899999998888998999998889999999999999999999999999999888776666555


Q ss_pred             ccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHH
Q 011369          256 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  335 (487)
Q Consensus       256 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (487)
                      ..|+.+++   ++ .+.                                         +    ..++.++.+|+|.++..
T Consensus       183 ~~~~~~~~---~~-~~~-----------------------------------------~----~~~~~~~~l~~~~~~~~  213 (390)
T TIGR02718       183 LKDRAVAS---PE-APL-----------------------------------------A----RRASLFRFFRRPLAWSL  213 (390)
T ss_pred             cCCCCcCc---cc-cch-----------------------------------------h----hHHHHHHHHcCcCHHHH
Confidence            54432100   00 000                                         0    01235567788887777


Q ss_pred             HHHHHHHHhhheeeeecccceeeecccccccce-eeeceee-cccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHH
Q 011369          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (487)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (487)
                      ....++..........+.+.|+++ .|.++... ....... ...+++.++.|++.||+++|     +.+..+..+....
T Consensus       214 ~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~  287 (390)
T TIGR02718       214 LALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-----RTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHH
Confidence            766666666666666778888887 57776665 3323333 45667888999999999988     5555444433222


Q ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC-CchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          414 CLTAFCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       414 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .+......      +....+....+.++..+...+.......+..++ +.+++..+.. .....+|.++||.+.|++.|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~lg~~~g~~~~G~l~~~  366 (390)
T TIGR02718       288 ALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAV-QSTRDLGELIASSIAGYLTDR  366 (390)
T ss_pred             HHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            22222111      112222223333344455555555555566666 8899999997 556677889999999998874

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=5.2e-22  Score=194.60  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=126.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~g  183 (487)
                      ..+.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.++++|+++|+|
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            45678999999999999888887777777899999999 5999999999999999999998874 567778899999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCc--hhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 011369          184 EASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~  250 (487)
                      .|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+++|||+.|++.++..++..
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            99999999999999998654  45688999999999999999999999999999999999876544433

>PRK09669 putative symporter YagG; Provisional

Probab=99.85  E-value=3.2e-21  Score=187.73  Aligned_cols=327  Identities=12%  Similarity=0.041  Sum_probs=216.9

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCC-eEehhHHHHHHHHHHHhhcchh------HHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIA  174 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (487)
                      +.+.+++|+++.++|.+.++..+..++..|+.|.++||    +||| +.++.+.+..++..++....++      +..++
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~  113 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC  113 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            45678899999999999999999999999999999999    7775 5566677777776665544442      56667


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcC-CCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc-------ccchHHHHHHHHHHH
Q 011369          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILM  246 (487)
Q Consensus       175 ~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr~~f~~~~~~~  246 (487)
                      +..++.+++.........++.+|+. ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.+++.
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            7777778777777778889999998 45789988888888888887777654433221       357999999888887


Q ss_pred             HHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhh
Q 011369          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (487)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (487)
                      ++..++.++..+|....    +++++                                            .+..++.+.+
T Consensus       194 ~v~~~~~~~~~~e~~~~----~~~~~--------------------------------------------~~~~~~~~~~  225 (444)
T PRK09669        194 VVLFFCCFFMTKERYTP----EVDNS--------------------------------------------SSVWKDLKLL  225 (444)
T ss_pred             HHHHHHHhCCeEEecCC----CCcCC--------------------------------------------CCHHHHHHHH
Confidence            77666655554442111    00000                                            0112456778


Q ss_pred             hcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHH
Q 011369          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (487)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (487)
                      ++||.++......++............+.|.+...+.+.....+.....+..+++.++.+++.||+|+|     +....+
T Consensus       226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----~~~~~~  300 (444)
T PRK09669        226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-----RAFKWT  300 (444)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHH
Confidence            899998887766665544443333333334343333222222233334466678888999999999988     555544


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-------CCchhHHHHHHHHHHHhhcCCCcc
Q 011369          407 TFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       407 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                      .....+..+...  ..++.+..++..++.+++.+...+...+++.|..+       .+..|...|.. .....+|..+||
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~-~~~~klg~alg~  379 (444)
T PRK09669        301 IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN-LFAIKLGLAIGG  379 (444)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH-HHHHHHHHHHHH
Confidence            443333222222  22445555666677788888777777777777664       23456677775 666777888999


Q ss_pred             ceeeeeecc
Q 011369          478 PLVGVLQVC  486 (487)
Q Consensus       478 ~~~g~l~~~  486 (487)
                      .+.|++.|.
T Consensus       380 ~i~g~ll~~  388 (444)
T PRK09669        380 AVVGWILAW  388 (444)
T ss_pred             HHHHHHHHH
Confidence            998887664

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.7e-22  Score=170.62  Aligned_cols=354  Identities=12%  Similarity=0.016  Sum_probs=234.0

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh-c
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-H  144 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~  144 (487)
                      .+..+|+..+..++.....+..                 ..+.++|.+++.++..++.++|+....+..+++|++.|| +
T Consensus        45 ~lv~mc~lgfgsyfcyd~p~al-----------------q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f  107 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFCYDAPGAL-----------------QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF  107 (459)
T ss_pred             HHHHHHHhcccceeecCCchhh-----------------hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhh
Confidence            4445556566655554444432                 256778889999999999999999999999999999997 6


Q ss_pred             CCCeEehhHHHHHHHHHHHhh---cchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhh
Q 011369          145 NPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (487)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~---~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (487)
                      |-|+.-++-+.+..+|.++++   ..+.+|.+.++|++.|+|.-...++-+.+..-|+..|+.+.++|+..+..-+|..+
T Consensus       108 gir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  108 GIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence            888877776767777777765   46899999999999999998888899999999999999999999999999999988


Q ss_pred             HHHHHHhhccccch------HHH---HHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCccccc
Q 011369          222 GYVYGGVVGSHLNW------RYA---FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS  292 (487)
Q Consensus       222 g~~~~~~l~~~~~w------r~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (487)
                      --.+.+++.+..+=      +..   ....+.......+......--    . ++..++....++.       ..     
T Consensus       188 Nf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~----~-D~rAerilh~e~g-------~~-----  250 (459)
T KOG4686|consen  188 NFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL----S-DDRAERILHLEEG-------FL-----  250 (459)
T ss_pred             eeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh----h-hhHHHHHHhhhcC-------cc-----
Confidence            77777777654321      111   111111111111111111100    0 0000000000000       00     


Q ss_pred             ccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eee
Q 011369          293 EDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG  371 (487)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~  371 (487)
                                 . +.      .+    ..+.+  -..|.+|...+..+++..+..-+...-|.++++++|+++.++ .+.
T Consensus       251 -----------G-e~------pk----Ltdv~--~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~  306 (459)
T KOG4686|consen  251 -----------G-EE------PK----LTDVN--TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNIL  306 (459)
T ss_pred             -----------c-CC------cc----ccccc--ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchh
Confidence                       0 00      00    00000  124778888888888888888888888999999999998777 666


Q ss_pred             ceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE
Q 011369          372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL--TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCL  449 (487)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (487)
                      +.......+..++.|.++||.|++     .+.+.+..+..+..-  +.+..-+++.   .+++.|..+...-......++
T Consensus       307 s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~a~~~tl~~H~~l~Ft~lsPy~---~m~~lGLsysllAcslWP~va  378 (459)
T KOG4686|consen  307 STVYGISAVLSPVFGAISDKYGFN-----LWWVASACILTLLGHSGLFFTFLSPYT---SMTFLGLSYSLLACSLWPCVA  378 (459)
T ss_pred             hhhhhhhhhhhhhHHHhHhhhcce-----ehhHHHHHHHHHHHhhhHHhhhccHHH---HHHHHhhhHHHHHHHHhhhhh
Confidence            677777888899999999999998     444444443333322  2222223333   333334333322222344455


Q ss_pred             eecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          450 HSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       450 ~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ..+|.+.-|++.|.+ .....+|-.+.|+++|.+.|+
T Consensus       379 ~~vpE~qLGTaygf~-qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  379 SLVPEEQLGTAYGFI-QSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             hhCCHHHhcchHHHH-HHHHhhhhhHHhhhhheeecC
Confidence            567888999999998 566667999999999999885

>TIGR00788 fbt folate/biopterin transporter

Probab=99.84  E-value=3.4e-21  Score=187.28  Aligned_cols=366  Identities=14%  Similarity=0.022  Sum_probs=231.9

Q ss_pred             hhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc
Q 011369           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (487)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~  144 (487)
                      ..+.++...++..++. ......                ..|.+.+++|++.++++...+...+...+-.+ +|+++||+
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~----------------~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~   87 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLP----------------LSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF   87 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhh----------------hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence            3555566666666665 333221                12677888999999999999999999999666 99999999


Q ss_pred             C-----CCeEehhHHHHHH-HHHHHhhcchhHHHH-HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHH---HHHHHhh
Q 011369          145 N-----PFRLIGVGLSVWT-FATAGCGSSFDFWSI-AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW---LSMFYMC  214 (487)
Q Consensus       145 G-----rr~~l~~~~~~~~-~~~~~~~~a~~~~~l-~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~  214 (487)
                      +     ||+.++++.++.+ +.....+..++...+ .+.+++.+++.+...++.-+++.|..+ |++...   .+.....
T Consensus        88 ~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~  166 (468)
T TIGR00788        88 PLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA  166 (468)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence            8     7777888877763 444444444554444 448899999999999999999999998 555443   3344444


Q ss_pred             hhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCccccccc
Q 011369          215 IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (487)
Q Consensus       215 ~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (487)
                      ..+|.++|+.++|.+.+.++||..|++.+++.++..+ ..++.||++....++...+..                ... .
T Consensus       167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~----------------~~~-~  228 (468)
T TIGR00788       167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLE----------------MNM-A  228 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhcccccccccccccccch----------------hhh-h
Confidence            5589999999999999999999999999888776633 344445532100000000000                000 0


Q ss_pred             chhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH-HHhhheeeeecccceeeecccccccce-eeec
Q 011369          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (487)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (487)
                      .....            ..+..++..+..++.+++|.++...+..++ ..........+ -.+.++..|.++... ....
T Consensus       229 ~~~~~------------~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~  295 (468)
T TIGR00788       229 LLTLG------------VLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKV  295 (468)
T ss_pred             hhhhh------------HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHH
Confidence            00000            000111222345556777887775555444 22222211111 012334466776655 3334


Q ss_pred             eeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhccCC
Q 011369          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC----------LSSLYGFLALFTVGELLVFATQA  442 (487)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  442 (487)
                      ...++.+++....+++.+|++.|     +.+.++.++.++..+....          ..+.+.......+.+++.+..+.
T Consensus       296 ~~~v~~i~g~~~~~~~~~~~~~r-----~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~  370 (468)
T TIGR00788       296 VGNLGSLCGVGGYDRFLKTFPYR-----LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM  370 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc
Confidence            44566666666777766666655     6666666666655433210          02233444556677777778888


Q ss_pred             CeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          443 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       443 ~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +...++.+..|++.+|+..++. .....+|..+++.++|++.++
T Consensus       371 ~~~~~~~~~~p~~~egt~~al~-~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       371 PFLVLLARLCPSGCESSVFALL-ASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             cHHHHHHHhCCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999997 556677888999888877664

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.84  E-value=8.9e-21  Score=183.69  Aligned_cols=328  Identities=15%  Similarity=0.113  Sum_probs=251.9

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhh----hcCCCe-EehhHHHHHHHHHHHhhcc-h-------hHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFR-LIGVGLSVWTFATAGCGSS-F-------DFWS  172 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~a-~-------~~~~  172 (487)
                      +...+.+|+++...|.+..+.-+-.++..|+.|.++|    |+|||| .+++|..+.+++.+++... +       ....
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            4566777999999999999999999999999999999    899665 5667888888888877766 4       2344


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-------cchHHHHHHHHH
Q 011369          173 IAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAI  244 (487)
Q Consensus       173 l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~wr~~f~~~~~  244 (487)
                      +.+.-++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+.       .+|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            6777777799999999999999999998 57899999999998888887666666555422       169999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHH
Q 011369          245 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  324 (487)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (487)
                      +.++..++..+..+|..+..  +++                                            ++..+..+.++
T Consensus       186 v~~v~~~i~~~~~ke~~~~~--~~~--------------------------------------------~~~~~~~~~~~  219 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERSVEV--TEQ--------------------------------------------EKKISLRDSLR  219 (428)
T ss_pred             HHHHHhhhhhheeeeccccc--ccc--------------------------------------------ccccccccchh
Confidence            98888888777776611110  000                                            00112224567


Q ss_pred             hhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHH
Q 011369          325 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (487)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  404 (487)
                      .+++||.+....+..++...+........+.|.+...+.+.....+..+..++.+++.++.++++||+|+|     +.+.
T Consensus       220 ~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----~~~~  294 (428)
T PF13347_consen  220 SLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----KVYI  294 (428)
T ss_pred             hhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----eehh
Confidence            88899999998888888888888777777888887777664333555567788899999999999999999     6777


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC-------CchhHHHHHHHHHHHhhcCCC
Q 011369          405 AATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       405 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      .+..+.++..+.....+  +.+..++..++.+++.+..+....++..|..+.       +..|...|.. .....++..+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~-~~~~k~~~~l  373 (428)
T PF13347_consen  295 IGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN-SFFIKIGQGL  373 (428)
T ss_pred             hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh-hhhhHHHHHH
Confidence            77777777666666554  778888888999999999988889999988863       4457888885 6666667777


Q ss_pred             ccceeeeeec
Q 011369          476 SSPLVGVLQV  485 (487)
Q Consensus       476 ~p~~~g~l~~  485 (487)
                      ++.+.|.+.+
T Consensus       374 a~~i~g~~l~  383 (428)
T PF13347_consen  374 AGAIVGLLLA  383 (428)
T ss_pred             HHHHHHHHHH
Confidence            8777776544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.83  E-value=1.2e-20  Score=173.19  Aligned_cols=266  Identities=13%  Similarity=0.116  Sum_probs=193.5

Q ss_pred             hcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc------------
Q 011369          165 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  232 (487)
Q Consensus       165 ~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  232 (487)
                      +...+|+.++++-++.|.|.+...+..+.++++..++|++.+.+++.+..+++|..++|.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35678999999999999999999999999999999999999999999999999999999999977731            


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHhhcc-ccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccc
Q 011369          233 ----LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  307 (487)
Q Consensus       233 ----~~wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (487)
                          .+||++|++.+++.++..++..+.. ||..     +++.++...+                               
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~-----~~~~~~~~~~-------------------------------  128 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ-----EADVARVSSG-------------------------------  128 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----cccccccccc-------------------------------
Confidence                4799999988777555555443332 3311     0100000000                               


Q ss_pred             cccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeec--ccccccce-eeeceeecccchhhhh
Q 011369          308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  384 (487)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  384 (487)
                            +.     ...++.+++|.++...+..+++.....++..|.+.|+.+.  ++.++... ...+....+..+|+++
T Consensus       129 ------~~-----~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       129 ------DT-----TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             ------cc-----cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                  00     0012345677888888888888878888899999999754  57776555 5556777888999999


Q ss_pred             hhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHH
Q 011369          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (487)
Q Consensus       385 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (487)
                      ++++.||+++|     +.+..+..+.++..++....+... ......+.+++.+..+|.......+..|+ +.+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Confidence            99999999987     555555555555444443333322 23355577888888999888888887765 456677764


Q ss_pred             HHHHHhhcCCCccceeeeeecc
Q 011369          465 TVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       465 ~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                        ....+|+++.|.+.|.+.|+
T Consensus       271 --~~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       271 --CLAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             --HHHHhcchHHHHHHHHHHHh
Confidence              45667889999999998885

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.83  E-value=1.1e-20  Score=178.28  Aligned_cols=328  Identities=18%  Similarity=0.125  Sum_probs=237.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC-CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +..-++.|.|..|+|.+.++..+...+.++++|.++||++ +|+++.+..++.++........++++.+++.-++..+..
T Consensus        26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~  105 (400)
T PF03825_consen   26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFF  105 (400)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999999999986 577888888888887777788889999999888888888


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHH-HHhhcccc---chHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      ....|...++..+...  ++++-.|-.....++|.+++... ++.+....   +....+++.+...++.....+ .+|+.
T Consensus       106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~  182 (400)
T PF03825_consen  106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKT  182 (400)
T ss_pred             ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            8888888888888875  33444566666677777666443 22233222   223456666655544443333 34554


Q ss_pred             cCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHH
Q 011369          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (487)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (487)
                      ++++..+++.++                                             +...+..+++|+|++..+.+..+
T Consensus       183 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~llk~~~~~~Fll~~~  217 (400)
T PF03825_consen  183 PPKRSAKESVKK---------------------------------------------LLGLDALKLLKNPRFLVFLLAAF  217 (400)
T ss_pred             ccccccCCCccc---------------------------------------------ccchHHHHHhcCccHHHHHHHHH
Confidence            321111111110                                             00123346889999999888888


Q ss_pred             HHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 011369          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (487)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (487)
                      +.......+..+.+.|+++..+.+.... ...++..++.++.-...+++..|+|.+     +++.++.+..++=..+...
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999776543333 333455567778888888899998887     7777777776666655555


Q ss_pred             H-HHHHHHHHHH----HHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          420 L-SSLYGFLALF----TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       420 ~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      . ++.+..+...    .+.|..++..+.....++.+..|++.|+++.++.......+|.++|..++|++.|+
T Consensus       293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5 4444333333    35788888888888899999999999999999987777888999999999999886

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.82  E-value=5.7e-20  Score=176.67  Aligned_cols=328  Identities=14%  Similarity=0.102  Sum_probs=248.7

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh-hHHHHHHHHHHHhhcc-h-hHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       117 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~a-~-~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      +..++..++..+..++..|+.|.++|+-|+||.++ +...+..+.+.+..+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999998776554 4445555566666663 3 4544455555666777788888999


Q ss_pred             hhhhcCCCCch--------------------------hHHHHHHHhhhhhhhhhHHHHHHhhcc--------ccchHHHH
Q 011369          194 FIDDNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAF  239 (487)
Q Consensus       194 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr~~f  239 (487)
                      ++.|..+++++                          ++..+.-.....+|.++.-++.-.+..        ..+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          898888888888888887776644421        23468999


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhh
Q 011369          240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  319 (487)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (487)
                      .+.++..++..+..++..|+.++....++..+.                                       .....++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~g~~~l  270 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY---------------------------------------LRFGFKRL  270 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH---------------------------------------HHHHHHHH
Confidence            999999888888888888775432111111110                                       01344566


Q ss_pred             hHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchh
Q 011369          320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISN  398 (487)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  398 (487)
                      .+.+|++.+.|....+++.+++..-+...+......|.++..+++..+. .+..+..+.+++|.++.+++.||+|.|.. 
T Consensus       271 ~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-  349 (477)
T PF11700_consen  271 WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-  349 (477)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-
Confidence            6777888889999999999999998888888889999998999998777 55566779999999999999999999843 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHh
Q 011369          399 AFKLLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (487)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (487)
                        +.+....++..+..+....        .++.+.++++..+.|++.+..++..-++..+..|+++.+...|++ ...+.
T Consensus       350 --~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly-~i~gk  426 (477)
T PF11700_consen  350 --RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLY-AITGK  426 (477)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHH-HHHHH
Confidence              2343333333333333333        456777888888999999999999999999999999999999997 67777


Q ss_pred             hcCCCccceeeeeeccC
Q 011369          471 FGDVPSSPLVGVLQVCL  487 (487)
Q Consensus       471 ~g~~~~p~~~g~l~~~~  487 (487)
                      ..+.+||.+.|.+.|.+
T Consensus       427 ~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  427 ASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78899999999988753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.82  E-value=6.1e-20  Score=175.20  Aligned_cols=334  Identities=13%  Similarity=0.036  Sum_probs=220.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhh----hcCCCeEehhH-HHHHHHHHHHhhcchhHH---------
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW---------  171 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~a~~~~---------  171 (487)
                      +.+.+++|.+..+.+++..+..+...+.+++.|.++|    |+||||.++++ .....++.++.++++++.         
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            4466889999999999999999999999999999999    59999998775 666666767777776653         


Q ss_pred             --------HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCch--hHHHHHHHhhhhhhhhhHHHHHHhh--ccc-------
Q 011369          172 --------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSH-------  232 (487)
Q Consensus       172 --------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~-------  232 (487)
                              .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.+++..  .+.       
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence                    223333344557788888899999999998865  6899999999999999999999875  221       


Q ss_pred             ------cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhcc
Q 011369          233 ------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  306 (487)
Q Consensus       233 ------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (487)
                            .+.|+.|++.+++.++..++..+..+|.+....  ++.+..   +.    +     ++...          .  
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~~---~~----~-----~~~~~----------~--  241 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFINS---EA----A-----PPSKH----------G--  241 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchhh---hc----c-----ccccc----------c--
Confidence                  157899999998888888888877777443211  100000   00    0     00000          0  


Q ss_pred             ccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceee-ecccccccce-----------eeecee
Q 011369          307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSNADM-----------MFGGVT  374 (487)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~-----------~~~~~~  374 (487)
                           .....++.++.++++  .+.++..++..++.++++..+..|.+.|.. +.++.++...           ....+.
T Consensus       242 -----~~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~  314 (477)
T TIGR01301       242 -----EEAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN  314 (477)
T ss_pred             -----hhhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence                 001122333344322  467888888899999988888888888765 3444332111           111223


Q ss_pred             ecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 011369          375 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFLALFTVG  433 (487)
Q Consensus       375 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~  433 (487)
                      .+...+.+++..++.+|+|+|+    ....++.++.++++......++                     .+..++.+.+.
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~k----~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAGK----RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL  390 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence            3333455556677778887531    4546665555555555443332                     25566777778


Q ss_pred             HHHHhccCCCeeEEEEeecCC--CchhHHHHHHHHHHHhhcCCCcc
Q 011369          434 ELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~--~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                      |+..+..+..-++++.++.++  +..|..+|+.|.+. .+..++..
T Consensus       391 Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I-~lpQii~s  435 (477)
T TIGR01301       391 GIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAI-VIPQIIVS  435 (477)
T ss_pred             hHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHH-HHHHHHHH
Confidence            888887777778888888874  56699999985543 33444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.82  E-value=6.1e-20  Score=179.79  Aligned_cols=332  Identities=7%  Similarity=-0.058  Sum_probs=217.4

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhh----hcCC-CeEehhHHHHHHHHHHHhhcch------hHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSF------DFWSIA  174 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~a~------~~~~l~  174 (487)
                      ..+.+.+|+++.++|.+..+.-+.-++..|+.|.++|    |+|| |+.++++.+..+++.+++-..+      .+..++
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            3456677999999999999999999999999999999    5698 5667778777777765554433      244566


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcC-CCCchhHHHHHHHhhhhhhhhhHHHHHHhhc-------cccchHHHHHHHHHHH
Q 011369          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM  246 (487)
Q Consensus       175 ~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~~wr~~f~~~~~~~  246 (487)
                      +.-++.+++.....+...+++.|.. ++++|.+..++-..+.++|..+.+.+...+.       +..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6777778888888889999999998 5889999998877777777666554443321       1236888888887776


Q ss_pred             HHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhh
Q 011369          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (487)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (487)
                      ++..+..++..+|.......  +.++                                         ++..+..+.++.+
T Consensus       191 ~~~~~~~~~~~~e~~~~~~~--~~~~-----------------------------------------~~~~~~~~~~~~~  227 (473)
T PRK10429        191 IVSTIITLRNVHEVYSSDNQ--VSAE-----------------------------------------GSHLTLKDIVALI  227 (473)
T ss_pred             HHHHHHHHcCceecCCcccc--cccc-----------------------------------------ccCCCHHHHHHHH
Confidence            66666665555552211000  0000                                         0000112345567


Q ss_pred             hcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHH
Q 011369          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (487)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (487)
                      ++||.++..+...++..........+.+.|.+...+.......+..+..++.+++.++.+++.||+|+|     +.+..+
T Consensus       228 ~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----~~~~~~  302 (473)
T PRK10429        228 YKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----ILWAGA  302 (473)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHH
Confidence            789888887777776666666555566656555444322222333344467788889999999999998     555555


Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-------CCchhHHHHHHHHHHHhhcCC
Q 011369          407 TFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDV  474 (487)
Q Consensus       407 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~  474 (487)
                      ..+.++..+....     .++.+..++...+.+++.+..++....+..+..+       .+..|...|.. .....+|..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~-~~~~K~~~a  381 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ-TMVVKGGSA  381 (473)
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH-HHHHHHHHH
Confidence            5443433322221     2334445555556666666666666666666644       34556677885 666777888


Q ss_pred             Cccceeeeeecc
Q 011369          475 PSSPLVGVLQVC  486 (487)
Q Consensus       475 ~~p~~~g~l~~~  486 (487)
                      +++.+.|++.|.
T Consensus       382 l~~~i~g~~l~~  393 (473)
T PRK10429        382 FAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHHHHHHH
Confidence            899888887653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.80  E-value=4.7e-19  Score=169.83  Aligned_cols=149  Identities=14%  Similarity=0.124  Sum_probs=123.1

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGE  184 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~g~  184 (487)
                      .+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.+..+ +...++++..+.++|.
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            35677899999999999999999999999999999999 999999999999999987776543 2233444555556677


Q ss_pred             hhhhhhhhhhhhhcCCCC--chhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          185 ASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      |...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+.+.+.+|||+.|.+.++. .+..++.++.
T Consensus       115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig-m~l~li~~~~  187 (493)
T PRK15462        115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG-MIAGLVIFLC  187 (493)
T ss_pred             ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH-HHHHHHHHHH
Confidence            777788889999999975  6999999999999999999999999999999999999997664 3444444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=2e-18  Score=156.58  Aligned_cols=348  Identities=14%  Similarity=0.103  Sum_probs=240.8

Q ss_pred             ccccchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHH
Q 011369           60 WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFAS  139 (487)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~  139 (487)
                      .+++|.+++++++..+.+.+....++..                 .......++ +.+..-|+.-+|++.+....+++-|
T Consensus        40 y~rRW~vLl~~slL~~SN~~qWI~ya~i-----------------~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw  101 (480)
T KOG2563|consen   40 YPRRWVVLLAFSLLNFSNGMQWIQYAPI-----------------NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMW  101 (480)
T ss_pred             chhHhHHHHHHHHHHhcCcchheeehhH-----------------HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3344556666677777776666555432                 134455567 7778889999999999999999999


Q ss_pred             hhhhcCCCeEehhHHHHHHHHHHHhhcch------hHH--HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHH
Q 011369          140 LAKSHNPFRLIGVGLSVWTFATAGCGSSF------DFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF  211 (487)
Q Consensus       140 l~dr~Grr~~l~~~~~~~~~~~~~~~~a~------~~~--~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~  211 (487)
                      +.|++|-|..++++.++.++|+.+-..+.      .++  ....+..+.+.+.-.+...-..+..-||+++||..+..+-
T Consensus       102 ~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~  181 (480)
T KOG2563|consen  102 ILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLG  181 (480)
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHH
Confidence            99999999999999999999999877652      445  6778899999988888887788899999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHhhccc------cchHH--HHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcc
Q 011369          212 YMCIPTGVALGYVYGGVVGSH------LNWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  283 (487)
Q Consensus       212 ~~~~~~G~~~g~~~~~~l~~~------~~wr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  283 (487)
                      ..+..+|..+|.++...+..+      ..|..  .|+..+.+..+.+++..+..++.++.  ++......          
T Consensus       182 v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~----------  249 (480)
T KOG2563|consen  182 VMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA----------  249 (480)
T ss_pred             HhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh----------
Confidence            999999999999888887754      34654  45555555444444444444442221  11111110          


Q ss_pred             cCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccc
Q 011369          284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  363 (487)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  363 (487)
                                                    .+..++.+..++.++|+++....+.+......+++..+.+...+.. .++
T Consensus       250 ------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY  298 (480)
T KOG2563|consen  250 ------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGY  298 (480)
T ss_pred             ------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccC
Confidence                                          0112355778899999999999988888887777777666544433 234


Q ss_pred             cccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 011369          364 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSLYGFLALFTVGELLVF  438 (487)
Q Consensus       364 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  438 (487)
                      +.... .......+++.++.+++|.+.||.++.+    ...........+..+.+...    ...+.......+.|++..
T Consensus       299 ~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk----~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  299 EGVFAGYIGALMIVAGMLGALASGIIADKTKKFK----LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             CccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            43333 5556667889999999999999998764    22333333333331222221    123444555566777778


Q ss_pred             ccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhc
Q 011369          439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (487)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (487)
                      +..|...-+..|...|..-++..|..+...+..+
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~  408 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFG  408 (480)
T ss_pred             CCCCcceeeeeeeccccCCcccceeEEeehhHHH
Confidence            8888888899999888777777776644444443

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=7.9e-19  Score=171.26  Aligned_cols=325  Identities=10%  Similarity=-0.018  Sum_probs=206.2

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc----CCCeEe-hhHHHHHHHHHHHh-h----cch--hHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRLI-GVGLSVWTFATAGC-G----SSF--DFWSI  173 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~----~a~--~~~~l  173 (487)
                      +.+.+.+|++..++|.+.++..+..++..++.|+++||.    ||||.. +.+.+...+..++. .    .++  ....+
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            446777899999999999999999999999999999996    666644 55555444433332 1    122  23334


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCC-CchhHHHHHHHhhh-----hhhhhhHHHHHHhhcccc--chHHHHHHHHHH
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAFWGEAIL  245 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~  245 (487)
                      ++.-++.+++.+...+...++..+.... ++|.+..++-..+.     .++..++|.+++......  +|.....+.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~  192 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA  192 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            5556777888888888888887777654 67888766655433     345556666665432211  122122233333


Q ss_pred             HHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHh
Q 011369          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (487)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (487)
                      +++..++.....||....    +.++                                             .+..+.++.
T Consensus       193 ~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~~~~~~~  223 (448)
T PRK09848        193 GMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSLKISLQT  223 (448)
T ss_pred             HHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCHHHHHHH
Confidence            333333333333432110    0000                                             011234677


Q ss_pred             hhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeece-eecccchhhhhhhhhHhhhcccchhhhHHHH
Q 011369          326 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGV-TIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (487)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  404 (487)
                      +++||.++...+..++...+......+.|.|+++..+.+.....+... ..++.+++.++.+++.||+++|     +.+.
T Consensus       224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~  298 (448)
T PRK09848        224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFL  298 (448)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHH
Confidence            889999998888877777777777777888888887766543322222 2355677888899999999988     6666


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC-------CchhHHHHHHHHHHHhhcCCC
Q 011369          405 AATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       405 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      .+..+..+..+.....  .+.+...+..++.+++.+...+.......+..+.       +.+|...|+. ...+.+|..+
T Consensus       299 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~-~~~~klg~ai  377 (448)
T PRK09848        299 IGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF-SFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH-HHHHHHHHHH
Confidence            6666555544444332  2344445556667777777777667777776654       3468888886 6677778888


Q ss_pred             ccceeeeeec
Q 011369          476 SSPLVGVLQV  485 (487)
Q Consensus       476 ~p~~~g~l~~  485 (487)
                      |+.+.|.+.+
T Consensus       378 g~~i~g~~l~  387 (448)
T PRK09848        378 GGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.74  E-value=8.7e-19  Score=158.17  Aligned_cols=325  Identities=14%  Similarity=0.072  Sum_probs=252.9

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeE-ehhHHHHHHHHHHHhhcchh---HHHHHHHHHHhhhhhhhhhhh
Q 011369          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFD---FWSIAICRMLVGVGEASFISL  190 (487)
Q Consensus       115 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~a~~---~~~l~~~r~l~G~g~g~~~~~  190 (487)
                      +.+..+...++..+..++.+|+.|.++|+.|+||. +-+...+..++.++..++++   ++..++.-++..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34566888899999999999999999999997665 44555555666666666654   445566777888999999999


Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHH--Hh-hc---------------cccchHHHHHHHHHHHHHHHHH
Q 011369          191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GV-VG---------------SHLNWRYAFWGEAILMLPFAVL  252 (487)
Q Consensus       191 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~-l~---------------~~~~wr~~f~~~~~~~~~~~~~  252 (487)
                      ..+++.+..++++-++..++-.....+|..+.-++.  .. ..               +...=|..+.+.++..++..+.
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            999999999998888888777777777776655443  11 11               2345788899999888888888


Q ss_pred             HhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhH
Q 011369          253 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  332 (487)
Q Consensus       253 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (487)
                      .++..|+.++... ++  ++                                      ......++.+..++++.+++.+
T Consensus       216 m~~~v~~~~~~~~-~~--~~--------------------------------------~l~~g~k~L~~t~k~i~~~~~i  254 (438)
T COG2270         216 MILNVHDAEKISS-PP--PT--------------------------------------ALRNGFKELKSTFKEIRGRKNL  254 (438)
T ss_pred             HHhcccccccccc-cc--hH--------------------------------------HHHHHHHHHHHHHHHHhcccch
Confidence            7777765332110 00  00                                      0114456667788888899999


Q ss_pred             HHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHH
Q 011369          333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (487)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (487)
                      ..+.+..+++.=+...+......|..+.+|++..+. .+.....+.+++|+++.|++.||+|.|     +++.++.++..
T Consensus       255 ~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~  329 (438)
T COG2270         255 VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILS  329 (438)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHH
Confidence            999999998888888888888889998899998777 566667789999999999999999999     67777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          412 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.++..........++++..+.+.+.+..+...-++..+.+|+++-++..|++ ......+..+||.+.+.+.|.
T Consensus       330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly-altgra~S~~gp~lv~v~t~i  403 (438)
T COG2270         330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLY-ALTGRAASFLGPFLVAVITQI  403 (438)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehh-hhhhhHHHHHHHHHHHHHHHH
Confidence            77777777776777777778888889999999999999999999999999997 667777889999999887764

>PRK11462 putative transporter; Provisional

Probab=99.73  E-value=1.7e-17  Score=161.37  Aligned_cols=321  Identities=13%  Similarity=0.038  Sum_probs=197.9

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCCe-EehhHHHHHHHHHHHhhcchh------HHHHHH
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIAI  175 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~------~~~l~~  175 (487)
                      ...+..|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+..+++.+++-..++      +..+++
T Consensus        35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI  114 (460)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            3556779999999999999999999999999999996    68765 455676777777766654442      455666


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-------cchHHHHHHHHHHHH
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILML  247 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~wr~~f~~~~~~~~  247 (487)
                      .-++..++.......-.++..|..+ ++||.+..++...+..+|..+++.+...+...       .+|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            7777788888888889999999987 78999999999999999888877665444322       368888888887766


Q ss_pred             HHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhh
Q 011369          248 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  327 (487)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (487)
                      +..++.++..+|..+.    ++.+                                             .+..+.++..+
T Consensus       195 i~~~i~~~~~kE~~~~----~~~~---------------------------------------------~~~~~~l~~~~  225 (460)
T PRK11462        195 MMLAFCFFTTKERVEA----PPTT---------------------------------------------TSMREDLRDIW  225 (460)
T ss_pred             HHHHHHHhcceeccCC----CccC---------------------------------------------CCHHHHHHHHh
Confidence            6665555544442111    0000                                             00123456677


Q ss_pred             cchhHHHHHHHHHHHHhhhe---eeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHH
Q 011369          328 QEKVYVVNVLGYIAYNFVIG---AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (487)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  404 (487)
                      +||.++......++......   +...|...|.   .+.+.....+.....++++++.++++++.||+++|     +...
T Consensus       226 ~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----~~~~  297 (460)
T PRK11462        226 QNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI---LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----TIFW  297 (460)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHH
Confidence            88887776555444433322   2333333333   33222222333455577788899999999999987     4443


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-------CCchhHHHHHHHHHHHhhcCCC
Q 011369          405 AATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVP  475 (487)
Q Consensus       405 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~  475 (487)
                      ....+..+..+.....  .+.....+..++.+++.+...+....+..+..+       .+..|...+.. ....-+|..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~-~f~~Klg~al  376 (460)
T PRK11462        298 WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGT-LFVLKLGLAF  376 (460)
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHH-HHHHHHHHHH
Confidence            3322222222222221  222223333444555544444333444444443       23334444553 4556667777


Q ss_pred             ccceeeeeec
Q 011369          476 SSPLVGVLQV  485 (487)
Q Consensus       476 ~p~~~g~l~~  485 (487)
                      ++.+.|++.+
T Consensus       377 g~~i~g~iL~  386 (460)
T PRK11462        377 GGALIGWMLA  386 (460)
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.71  E-value=2.8e-18  Score=158.66  Aligned_cols=330  Identities=15%  Similarity=0.114  Sum_probs=215.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHH--HHH-HHhhcc----hhHH-HHHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT--FAT-AGCGSS----FDFW-SIAICRML  179 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~a----~~~~-~l~~~r~l  179 (487)
                      +.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+..  .+. +...+.    .|++ ..+++-+.
T Consensus        34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~  113 (412)
T PF01306_consen   34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIY  113 (412)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTT
T ss_pred             HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445589999999999999999999999999999999997776554433222  122 222222    2322 23334444


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      .|+......|+.-+++.++.  ++.+.=.|-.....++|.+++..++|.+.+ .+-+..||+..+.+++..++.++..|+
T Consensus       114 l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  114 LGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             TTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             HHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            55555556666666666654  234455666778888999999999998886 455788888777666666655555444


Q ss_pred             ccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHH
Q 011369          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (487)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (487)
                      ..+.....+..+.                                         ++.....++..+++|+|++|.+.+..
T Consensus       191 ~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~k~~~fw~~~l~v  229 (412)
T PF01306_consen  191 VPPQAEVADALGA-----------------------------------------KKDKVSLKDVLSLFKMRNFWFFVLFV  229 (412)
T ss_dssp             SSSSS-SSTTSSS-----------------------------------------------HHHHHHHTTSHHHHHHHHHH
T ss_pred             Cchhhhhhccccc-----------------------------------------CCCCCcHHHHHHHhcchhHHHHHHHH
Confidence            2221111110000                                         00000124567789999999988876


Q ss_pred             HHHHhhheeeeecccceeeeccccc---ccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH
Q 011369          340 IAYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (487)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (487)
                      ......+..+....|.|....+...   .... .+.++..+..++...+..++.+|+|.|     +.++++..++.+=..
T Consensus       230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHHH
Confidence            6666556555444555554433221   1112 333455577788888999999999999     788888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          416 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .....++.+.+...-.+-++-.........-++.+..|++..++...+.......+|.++.+.+.|.++|+
T Consensus       305 ~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~  375 (412)
T PF01306_consen  305 GSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR  375 (412)
T ss_dssp             HHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh
Confidence            77778888888888888888888887778888899999999889888865666777888888888988875

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=1.4e-16  Score=128.99  Aligned_cols=139  Identities=29%  Similarity=0.390  Sum_probs=127.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q 011369          121 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  200 (487)
Q Consensus       121 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~  200 (487)
                      ++.+.+.++..++.++.|++.||+|||+.+..+..+..++.+....+++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            45567788999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       201 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +++|++..++.+....+|..+++.+++.+.+..+|++.|++.+++.++..+..++..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999998999999999988887777777666554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.69  E-value=1.7e-16  Score=144.08  Aligned_cols=327  Identities=12%  Similarity=0.032  Sum_probs=224.1

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC-----CCeEe-hhHHHHHHHHHHHhhcc-----h-------h
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLI-GVGLSVWTFATAGCGSS-----F-------D  169 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l-~~~~~~~~~~~~~~~~a-----~-------~  169 (487)
                      +..|++++..-.+...+...+.. ...+.+|..+|+.+     ||..+ ..|.++...+..+..++     .       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            56789999888888888887766 46999999999998     77654 45555555555544432     2       1


Q ss_pred             --HH--HHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccch-HHHHHH--H
Q 011369          170 --FW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW-RYAFWG--E  242 (487)
Q Consensus       170 --~~--~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w-r~~f~~--~  242 (487)
                        .+  ...++-.+.|+|.+...+...+++.|..|+|+|+++.++......+|.+++..+.+.+.+.+.- |..-.+  .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence              22  2355567789999999999999999999999999999999999999999999999988877653 222222  2


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHH
Q 011369          243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  322 (487)
Q Consensus       243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (487)
                      +++.++..++..+- .|.......+.++                                           ++...+.+.
T Consensus       165 a~i~~~l~~ia~wg-~E~r~~~~~~~~~-------------------------------------------~~~~~f~~a  200 (403)
T PF03209_consen  165 ALIALLLNLIALWG-QEPRRSRRAAAAE-------------------------------------------RPRPPFREA  200 (403)
T ss_pred             HHHHHHHHHHHHHh-cccCCcccccCCC-------------------------------------------CCCccHHHH
Confidence            22222222222222 2211111110000                                           001112244


Q ss_pred             HHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhh-hcccchhhh
Q 011369          323 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAF  400 (487)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~  400 (487)
                      ++++..+|....+....++...++......+-.|--+.++++..+. .+......+..+|....|++..| .+++     
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----  275 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----  275 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----
Confidence            5666677777777777777777777777788889999999997776 66677778888888888888763 4433     


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcc
Q 011369          401 KLLSAATFLGAISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       401 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                      +...+++..++.+..+.   ....+.+.+....++.|++.+..........++...++..|..+|. +...+..+..++.
T Consensus       276 ~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~-WGaaQA~A~Glg~  354 (403)
T PF03209_consen  276 RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA-WGAAQAIARGLGT  354 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH-HHHHHHHHHHHHH
Confidence            33444444444443333   3344567777778888888887777777778888888999999999 5777777777888


Q ss_pred             ceeeeeec
Q 011369          478 PLVGVLQV  485 (487)
Q Consensus       478 ~~~g~l~~  485 (487)
                      .++|.+.|
T Consensus       355 ~~GG~~~D  362 (403)
T PF03209_consen  355 FLGGALRD  362 (403)
T ss_pred             HHHHHHHH
Confidence            88777766

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1e-15  Score=143.07  Aligned_cols=328  Identities=10%  Similarity=0.023  Sum_probs=242.2

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCC-eEehhHHHHHHHHHHHhhcchh------HHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIAIC  176 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~~~l~~~  176 (487)
                      ..+.+|+++..+|.+..+.-+--++..|+.|.+.||    +||+ +.++.+.+..++.+.++-.+++      ....++.
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt  118 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT  118 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence            456679999999998888888889999999999996    6765 4677787888998888887773      5556777


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhc-----c--ccchHHHHHHHHHHHHH
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVG-----S--HLNWRYAFWGEAILMLP  248 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~--~~~wr~~f~~~~~~~~~  248 (487)
                      -++.+++-......-.++..|+.+ ++||.+..++-+.+..+|..+...+...+.     +  ..||+..-++.++++.+
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            888899999999999999999986 689999999999999998776555544433     2  45899999999999888


Q ss_pred             HHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhc
Q 011369          249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  328 (487)
Q Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (487)
                      ..+.+++-.+|...+..+.++.                                            ...+..+++..+++
T Consensus       199 ~~l~~~~~v~ER~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~  234 (467)
T COG2211         199 LLLFCFFNVKERVVETQPTKTG--------------------------------------------VKLKLKDSFLLIFK  234 (467)
T ss_pred             HHHHHHHHhhcccCccccCccc--------------------------------------------ccccHHHHHHHHHc
Confidence            8888888776643321111110                                            01122234556789


Q ss_pred             chhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHH
Q 011369          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (487)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  407 (487)
                      ||.+...++..++...+..........|.+...+.+.... ........+.+.+.++..++.+|+|+|     +...++.
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~~  309 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIGL  309 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHHH
Confidence            9999998888888877777777777777777666665444 333344455566688999999999999     7888888


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeeEEEEeecC-------CCchhHHHHHHHHHHHhhcCCCccc
Q 011369          408 FLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       408 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      ++.++..+.....+  +.+..++..++.+++.+...+...+++++.++       .+..|...|.. .+..-+|.+++..
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~-tF~~K~g~ala~~  388 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM-TFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH-HHHHHHHHHHHHH
Confidence            87777777666654  45556666688888888888877777777653       24556777775 5666667777777


Q ss_pred             eeeeeec
Q 011369          479 LVGVLQV  485 (487)
Q Consensus       479 ~~g~l~~  485 (487)
                      +.|++.+
T Consensus       389 ~~g~~L~  395 (467)
T COG2211         389 IPGWILG  395 (467)
T ss_pred             HHHHHHH
Confidence            7776654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.64  E-value=1.9e-15  Score=139.97  Aligned_cols=372  Identities=12%  Similarity=0.118  Sum_probs=218.2

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGE  184 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~  184 (487)
                      ..+.+|+++++..-+.++|.--.-...+++|+++||+ |+|+.++.|.++..+|-++.+.+.  +...++++-++.++|.
T Consensus        52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~  131 (498)
T COG3104          52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT  131 (498)
T ss_pred             ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence            3444669999988888888888889999999999996 999999999999999999999984  7889999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCC--chhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccC
Q 011369          185 ASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (487)
                      |.+-+...+++.|.+|++  +|-..+++++.+.++|+.++|++.+++.+++||+..|.+.++-....++.. ...+++..
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f-~~~~r~~~  210 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF-LLGRRHVK  210 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH-HHccchhc
Confidence            999999999999999864  477889999999999999999999999999999999999877655544443 33344333


Q ss_pred             CCCCCCcccchhhcccccCcccCCC--cccc-cccchhhhhhhhhcc---ccccc-hhhhhh--hhhHHHHhhhc-chhH
Q 011369          263 GFAPAESGKAQVVASVSEGSEASNL--NDHV-SEDISDQASERSIKS---IGESR-FLNQLS--QFSQDTKVLLQ-EKVY  332 (487)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~--~~~~~~~~~~~-~~~~  332 (487)
                      .....++......+...........  .... ......+........   ..... ..+..+  +.....++++. -+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lf  290 (498)
T COG3104         211 GIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLF  290 (498)
T ss_pred             CCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHH
Confidence            2222221111111000000000000  0000 000000000000000   00000 000000  00011111110 1122


Q ss_pred             HHHHHHHHHHHhhheeeeecccceeeec-ccccccceeeeceeecccchhhhhhhhhHhhhcccc--hhhhHHHHHHHHH
Q 011369          333 VVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI--SNAFKLLSAATFL  409 (487)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~  409 (487)
                      ....+.+.++.-....+..|.-...+.. +|++.....+-++..+.-++..++..++..|+++++  +....-+..+..+
T Consensus       291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l  370 (498)
T COG3104         291 LFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLIL  370 (498)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHH
Confidence            2222222222222222222222222222 233322223444555556667777777777754442  2111223333333


Q ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccce
Q 011369          410 GAISCLTAFCL----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (487)
Q Consensus       410 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~  479 (487)
                      +....+.+...          .+.++.+...++..++.-...|....++.+..|+...+..++.. ...+..|..++..+
T Consensus       371 ~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w-fLt~a~~~~l~g~v  449 (498)
T COG3104         371 AGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW-FLTVAAGQTLGGQV  449 (498)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHhhcee
Confidence            33333333222          13566777778888888777888899999999999999999985 66666676666665


Q ss_pred             ee
Q 011369          480 VG  481 (487)
Q Consensus       480 ~g  481 (487)
                      .+
T Consensus       450 a~  451 (498)
T COG3104         450 AG  451 (498)
T ss_pred             cc
Confidence            55

>TIGR00889 2A0110 nucleoside transporter

Probab=99.60  E-value=7.9e-15  Score=141.22  Aligned_cols=145  Identities=16%  Similarity=0.215  Sum_probs=127.7

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhhhhhhhhhh
Q 011369          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLA  191 (487)
Q Consensus       116 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~g~g~~~~~~  191 (487)
                      .++.+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....    +++.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999988876666532    35677889999999999888999


Q ss_pred             hhhhhhcCCCCchhHHHHHHH-hhhhhhhhhHHHHHHhhccc------cchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          192 APFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      ..++.|++|+++|++++|+.+ ...++|..+||+++|.+.++      +||+..|.+.+++.++..++.+++.+|+
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999997 67889999999999999877      4699999999999888888888887764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=5.3e-14  Score=133.98  Aligned_cols=314  Identities=13%  Similarity=0.093  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh--hhhhhhhhhhhhhcCCCCch
Q 011369          127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE--ASFISLAAPFIDDNAPVPQK  204 (487)
Q Consensus       127 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~--g~~~~~~~~~i~~~~~~~~r  204 (487)
                      .+...+.++..|.++||+|||..+....+...+..+...+..  |++++   +.|+..  +.......++++|....++|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHH
Confidence            577788999999999999999999999999888888777766  33333   444432  34667788999999999999


Q ss_pred             hHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCccc
Q 011369          205 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  284 (487)
Q Consensus       205 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (487)
                      ....++.......+..++|.+++.+....|.-.+|.+..+..++..+...+.+||+..+..+++........       .
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~-------~  219 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTP-------G  219 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCC-------C
Confidence            999999999999999999999999999999999999999999999888888889876554333100000000       0


Q ss_pred             CCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhh-eeeeecccceeeecccc
Q 011369          285 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI-GAYSYWGPKAGYNIYHM  363 (487)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~  363 (487)
                      ...                         .....+..+..+..-.+|..+..++..+...... ....-..+.|+...+++
T Consensus       220 ~~~-------------------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w  274 (463)
T KOG2816|consen  220 SLD-------------------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGW  274 (463)
T ss_pred             ccc-------------------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCc
Confidence            000                         0011111122222223455555444444443333 22231447788889999


Q ss_pred             cccce-eeeceeecccchhhhhhh-hhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 011369          364 SNADM-MFGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ  441 (487)
Q Consensus       364 ~~~~~-~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (487)
                      +.... .+.+.......++.++.. .+...++.+     +....+...-.+..+......+.|..+... +.........
T Consensus       275 ~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~~-v~~~~~~~~~  348 (463)
T KOG2816|consen  275 NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAAG-VVVALAGIVF  348 (463)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHHH-HHHHhhcchh
Confidence            87766 455566666667776666 667777777     655566555555555555555555444433 3344455677


Q ss_pred             CCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          442 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       442 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                      +...+.....+.++.+|.+.++. .....+..+++|.+.+.+.
T Consensus       349 pa~~s~~s~~v~~~e~g~v~~~i-s~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  349 PAIRAFASILVSPEEQGKVFGII-SGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             HHHHhHHHhhcccccccchhhHH-HHHHHHhhhhhHHHHHHHH
Confidence            77888888899999999999997 7777778888888777653

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.57  E-value=2e-13  Score=122.26  Aligned_cols=259  Identities=12%  Similarity=0.118  Sum_probs=168.0

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      +++.+.+-.++...+.+...-.                     ..+-+++|.++.|++.+....+....+..++.|.++|
T Consensus        36 qr~yl~vY~La~~aDWLQGpY~---------------------Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD   94 (354)
T PF05631_consen   36 QRKYLLVYLLAMAADWLQGPYL---------------------YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD   94 (354)
T ss_pred             HHHHHHHHHHHHHHHHhhcchh---------------------HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666544322                     2244679999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhh-hhc----CCCCchhHHHHHHH-hhhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFI-DDN----APVPQKTAWLSMFY-MCIP  216 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~  216 (487)
                      |+|||+.-++.++++++.++ +-..+|++.++++|++.|++.+....+--+++ .|.    +|++..+..++... ...+
T Consensus        95 ~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~  173 (354)
T PF05631_consen   95 RYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNG  173 (354)
T ss_pred             hcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhH
Confidence            99999999999999998886 55568999999999999999999998887764 555    23333344444333 3334


Q ss_pred             hhhhhHHHHHHhhccccch--HHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCccccccc
Q 011369          217 TGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (487)
Q Consensus       217 ~G~~~g~~~~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (487)
                      +-.+++.+++..+.+..+.  ..+|....++.++..+++....+|...+   +++...                      
T Consensus       174 ~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~~----------------------  228 (354)
T PF05631_consen  174 VVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSSS----------------------  228 (354)
T ss_pred             HHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---cccccc----------------------
Confidence            4455666666677665544  7888888777766666655444442211   111100                      


Q ss_pred             chhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhe-eeeecccceeeecccccccceeeece
Q 011369          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG-AYSYWGPKAGYNIYHMSNADMMFGGV  373 (487)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~  373 (487)
                                          ..++..+..+.+.++|+++...+...+.-..++ .+..|.|..-.+..+.+ .. .+.+.
T Consensus       229 --------------------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P-~G-lIFss  286 (354)
T PF05631_consen  229 --------------------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELP-LG-LIFSS  286 (354)
T ss_pred             --------------------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCC-ch-HHHHH
Confidence                                011222445667788888888887776655555 44556776552211111 11 23333


Q ss_pred             eecccchhhhhhhhhHh
Q 011369          374 TIVCGIVGTISGGFILD  390 (487)
Q Consensus       374 ~~~~~~~~~~~~g~l~d  390 (487)
                      +.++..+|+.+..++..
T Consensus       287 FM~a~MlGS~lf~~l~s  303 (354)
T PF05631_consen  287 FMVAMMLGSSLFSRLLS  303 (354)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44555566655544443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.55  E-value=6.6e-14  Score=134.20  Aligned_cols=149  Identities=15%  Similarity=0.094  Sum_probs=126.1

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~  186 (487)
                      .+++++|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.+...+.......+++.+.+++.+++.+++.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            35677899999999998888888888999999999999999988777666665555555677888888999999998888


Q ss_pred             hhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      ..+....+..|.+|+ +|++++++++....+|..+++.+++.+.+++||+..|++.+++.++..+..++.
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            778788888999985 699999999999999999999999999999999999999888777666555544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.55  E-value=1.6e-14  Score=139.98  Aligned_cols=147  Identities=10%  Similarity=0.043  Sum_probs=130.0

Q ss_pred             cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhh
Q 011369          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLA  191 (487)
Q Consensus       112 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~  191 (487)
                      .+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999998999999999999999999999998888888


Q ss_pred             hhhhhhcCCCCchhHHHHH-HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          192 APFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      ..++.|.+|++.|+...+. ++....+|.++++++.|.+.+..|||..|++.+++.++..++.++..+
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999998887655 667788999999999999999999999999998887776666655543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.54  E-value=1.5e-13  Score=126.59  Aligned_cols=348  Identities=10%  Similarity=0.006  Sum_probs=224.5

Q ss_pred             Cccccc-cccCccccc-hhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 011369          106 SGIQGD-FKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g  183 (487)
                      |.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            445554 788887763 445566667788889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      .+ ...+.++++-...++++-.++.+...++..+|..++.++|..+..  ..+.+...++......+..+..++++ ...
T Consensus       108 ~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP-~~~  185 (412)
T PF01770_consen  108 TA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP-MPK  185 (412)
T ss_pred             HH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC-CCC
Confidence            88 467788999889999999999999999999999999999998875  34566676666655555555555554 322


Q ss_pred             CC--CCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHH
Q 011369          262 KG--FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (487)
Q Consensus       262 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (487)
                      +.  .++....+....+...+..++.         .+......+.+...........+..++++++..++|.++...+-+
T Consensus       186 ~S~~f~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWW  256 (412)
T PF01770_consen  186 RSLFFHRKPPAEQDANESESDKMNES---------PESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWW  256 (412)
T ss_pred             cccceeccCccccccccccccccccc---------cccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            11  1111110000000000000000         000000001111111112244566778888889999988888887


Q ss_pred             HHHHhhheeeeecccceeeeccccccccee---eeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 011369          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADMM---FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (487)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (487)
                      .+...++.-+.+|.....++....+.....   +-+...+.+.++.+..|++-.++.+...   ..+.....+.+..+++
T Consensus       257 a~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~---l~l~~~S~l~a~~L~l  333 (412)
T PF01770_consen  257 AFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE---LALGVFSLLQAGLLFL  333 (412)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH---HHHHHHHHHHHHHHHH
Confidence            777777776666666555544111111112   2234445566666777776444433211   3444555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHH
Q 011369          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS  467 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~  467 (487)
                      ....++.|...+..++++..+....+....-++.....+.-|...|++...
T Consensus       334 m~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  334 MSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHH
Confidence            667778888888777777777766666666666677677788888885333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.54  E-value=2.5e-14  Score=136.65  Aligned_cols=144  Identities=12%  Similarity=0.019  Sum_probs=126.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhH--HHHHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~g  183 (487)
                      +.+.++++.++.+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.++..+.++.  ..+++..++.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            44567788888889999999999999999999999999999999999999988888877776643  3355677888998


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHH
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~  249 (487)
                      .+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||++.|++.+++.++.
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            888888888999999999999999999999999999999999999999999999999988766554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=9.9e-14  Score=136.80  Aligned_cols=156  Identities=10%  Similarity=0.025  Sum_probs=119.2

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHH---hhcchhHHHHHHHHHHhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +++++|.+..+.++..+...++..++.+..|+++||+|||+++.++.++..++.+.   ...+++...++++|++.|++.
T Consensus       277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  356 (490)
T PRK10642        277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVIL  356 (490)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            44667888888888888889999999999999999999999888877654433322   223456788889999999988


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhccccccCC
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (487)
                      +........++.|.+|++.|++++++......++..++|.+.+++.+.. +|+.++++..+++++..+..+ +.||++++
T Consensus       357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~  435 (490)
T PRK10642        357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence            8777778889999999999999999754445566678888888877654 478887777666666555544 44887665


Q ss_pred             C
Q 011369          264 F  264 (487)
Q Consensus       264 ~  264 (487)
                      .
T Consensus       436 ~  436 (490)
T PRK10642        436 P  436 (490)
T ss_pred             C
Confidence            3

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.52  E-value=4.5e-13  Score=125.83  Aligned_cols=184  Identities=16%  Similarity=0.137  Sum_probs=145.8

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccc-ccccCccccchhhhHHHHHHHHHHHHHHHhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~  141 (487)
                      .||.+.+..+..++.....+++....                -|.+++ |.+.+.+..||+.++..++.+++++..|+..
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~----------------wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws   95 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSM----------------WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWS   95 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeec----------------chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccc
Confidence            34567777777777776666554321                144444 5788889999999999999999999999999


Q ss_pred             hhcCC-CeEehhHHHHHHHHHHHh-hc---ch-hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhh
Q 011369          142 KSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI  215 (487)
Q Consensus       142 dr~Gr-r~~l~~~~~~~~~~~~~~-~~---a~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  215 (487)
                      .|.+. |+.++.|.++..+++++. ++   .+ ..+.++++|++.|+|.| .......|+++....++|.++++....+.
T Consensus        96 ~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~  174 (488)
T KOG2325|consen   96 NKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGF  174 (488)
T ss_pred             cccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHH
Confidence            99986 888999999999999988 33   23 68889999999999988 55778999999888899999999999988


Q ss_pred             hhhhhhHHHHHHhhccc----------c---chHHHHHHHHHHHHHHHHHHhhccccccCC
Q 011369          216 PTGVALGYVYGGVVGSH----------L---NWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (487)
Q Consensus       216 ~~G~~~g~~~~~~l~~~----------~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (487)
                      .+|.++||.++..+..-          .   -+..+-|+++++.++..++..+...|..+.
T Consensus       175 vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  175 VLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            99999999888665521          1   135677888888888888888887775444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.51  E-value=1.9e-13  Score=131.59  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=128.2

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhh
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~  189 (487)
                      ++.|.  .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.+|.+.+++.+++.|++.+...+
T Consensus       244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence            34444  3456777888899999999999999999999999999888888888888888988899999999999998888


Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      .....+.|.+|+++|+++.++++....+|..+++++.+.+.+..||++.|++.+++.++..+..++..+
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888999999999999999999999999999999999999999999999998887776666655543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=1.2e-13  Score=139.32  Aligned_cols=139  Identities=9%  Similarity=-0.024  Sum_probs=121.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Q 011369          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (487)
Q Consensus       120 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~  199 (487)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456777899999999999999999999999999999999999999998888999999999988889999999999999


Q ss_pred             CCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      |.++|++++|+......+|.++||++++.+.+. +...+|++.+++.++.+++.+++ ||+
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET  736 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDT  736 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            999999999999999999999999999988764 45678888887776665555544 764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.49  E-value=4.2e-13  Score=129.88  Aligned_cols=154  Identities=18%  Similarity=0.118  Sum_probs=137.2

Q ss_pred             Cccccc-cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS  326 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            445455 8999999999999999999999999999999988888888888888888888888899888889999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +...+...+++.|..|++.||++++++.....+|..+|+.+.|.+.+.+|++..+++.+++.++..++.....|+
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            888888889999999999999999999999999999999999999999999999999988877777777666655

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=4.9e-13  Score=128.37  Aligned_cols=145  Identities=12%  Similarity=0.101  Sum_probs=127.8

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhh
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~  189 (487)
                      ++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+
T Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        244 ASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH
Confidence            344443  345667778888899999999999999999999999999999888888888988889999999999998888


Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      .....+.|.+|+++|+++.++++....+|..++|.+++.+.++.||++.|.+.+++.++..++.++.
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999999999999999999999999999999999999999999998877776665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.48  E-value=4e-13  Score=128.32  Aligned_cols=147  Identities=12%  Similarity=0.169  Sum_probs=126.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~  187 (487)
                      +.+++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.+..
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999888887778888999999999999999988887776666666667788888889999999999988


Q ss_pred             hhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      .+....++.|..|+ ++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..++..+
T Consensus       306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            88888999999885 67799999999999999999999999999999999999998887666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=1.3e-13  Score=133.21  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=125.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 011369          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~  198 (487)
                      .+.+.+++.++..++.+.+|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566677788889999999999999999999999988888888888888899999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      .|+++||+.+++......+|..+||.+++.+.+..||++.|++.+++.++..+..++..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887776665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.48  E-value=6.8e-14  Score=136.45  Aligned_cols=146  Identities=14%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc--CCCeEehh--HHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (487)
                      |.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.++...+++++.+++.+++.|
T Consensus       265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G  344 (455)
T TIGR00892       265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG  344 (455)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            555577899999999999999999999999999999984  33433333  33444555566677889999999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHH
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~  251 (487)
                      ++.+...+...+++.|.+|++++++.+++++....+|..+||.++|.+.+.. +|++.|++.+++.++..+
T Consensus       345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999877 599999999887665444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.47  E-value=3e-13  Score=129.16  Aligned_cols=145  Identities=14%  Similarity=0.031  Sum_probs=131.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      |...+|+|.++.+.|++.++..++..++.++++++.||+|+|+.+.++.++..+..++.++++|.+.+++.++++|+..+
T Consensus       229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~  308 (382)
T TIGR00902       229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            44446799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHH-hhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~  252 (487)
                      ...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.+++|+ ..|++.++++++..++
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999998 9999999999986 57789999999999999999996 6788887777655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=2.4e-13  Score=128.42  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=138.2

Q ss_pred             Cccccc-cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCe-EehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 011369          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g  183 (487)
                      |.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+++..++.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~  278 (352)
T cd06174         199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFG  278 (352)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444444 4889999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      .+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..|++.+++.++..+..+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999999999999999999999999999998877666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.46  E-value=3.2e-13  Score=130.35  Aligned_cols=151  Identities=14%  Similarity=0.063  Sum_probs=129.2

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      |.+.++.|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+
T Consensus       244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            56667789999999999999999999999999999999999999888777777777777778888888888889999888


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhc
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      ...+...+++.|.+|+++|++.+|+.+....+|..+||.+++.+.++. +|...+++.+...++..+..++.
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999999998864 46666766666655555554444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=8.7e-13  Score=126.89  Aligned_cols=148  Identities=13%  Similarity=-0.042  Sum_probs=113.7

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh-hHHHH-------HHHHHHHhhcchhHHHHHHHHH
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSV-------WTFATAGCGSSFDFWSIAICRM  178 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~-------~~~~~~~~~~a~~~~~l~~~r~  178 (487)
                      .+.+++|.++.+.+++.+...++..++.++.|+++||+|||+... .....       ..+........++.+..+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            355678989999999999999999999999999999999996211 11111       1112222222345555555555


Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhh
Q 011369          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       179 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      +.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+..|++.+++.++..+..++
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            5555555 788999999999999999999999999999999999999999999988 999999998887766655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.44  E-value=5.7e-13  Score=132.25  Aligned_cols=143  Identities=13%  Similarity=0.056  Sum_probs=114.9

Q ss_pred             Cccc-cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhh
Q 011369          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGV  182 (487)
Q Consensus       106 ~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~  182 (487)
                      |.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.++....  .+.+.+.+..++.+.
T Consensus       299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            4444 6899999999999999999999999999999999999999888877766665544332  344455555555544


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHH
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~  248 (487)
                      ......+....++.|.+|+++|++++++.+....+|..+||.+++.+.+++||+..+...+....+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            443455667788999999999999999999999999999999999999999999888766654433

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=1.7e-12  Score=124.52  Aligned_cols=150  Identities=14%  Similarity=0.132  Sum_probs=128.4

Q ss_pred             Cc-cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |. +++++|.+..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+..++....+|.+.+.+..++.|++.
T Consensus       229 p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  308 (394)
T PRK03699        229 PEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFS  308 (394)
T ss_pred             HHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            44 44678999999999999999999999999999999999999998888877777777777788888888889999988


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      +..++...++..|..| +++++..+.......+|..++|.+.+.+.+..||+..+++.+++.++..+.....
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        309 SAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            8888888888888776 4567888999899999999999999999999999999999988877665544433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=2.6e-12  Score=123.19  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=124.4

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH-HHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+. ..+..+..++. .+....++.+.++++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            44566689999999999999999999999999999999998865 44444444443 33455678888889999999998


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +...+.....+.+..| ++|+++++++.....+|..+|++++|.+.+++|+|..|++.+++.++..+...+..
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            8777777888888877 68999999999999999999999999999999999999999988877666665554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.41  E-value=3e-12  Score=122.71  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=123.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc-chhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.+++|.+..+.++..+.+.++..++.+..|++.||+|||+.+.++..+..++.++... .++...+.  -++.|++.
T Consensus       229 p~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~  306 (393)
T PRK09705        229 PAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGL  306 (393)
T ss_pred             HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhc
Confidence            4455568999999999999999999999999999999999999998888877777665543 33322222  24568888


Q ss_pred             hhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      +...+.......+..+ +++|++..++.+....++..++|.+.+++.+..| |+..|++.++..++..+....+.||++
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            8888877777777775 5789999999999999999999999999999875 888888888887777777677767643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.40  E-value=1.9e-12  Score=127.03  Aligned_cols=150  Identities=12%  Similarity=0.004  Sum_probs=117.3

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHH--HhhcchhHHHHHHHHHHhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA--GCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      .+++++|.+..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..  .....++...+.+.+++.|++.
T Consensus       284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999887665544443322  2234456777778888888654


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhcc------------ccchHHHHHHHHHHHHHHHH
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~  251 (487)
                      ..........+.|.+|+++||.+.|+.+....+ |..++|.+.|.+.+            ..+|+..|++.++..++..+
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~  443 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC  443 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence            433333446777999999999999999988886 77999999999998            57899999998777766655


Q ss_pred             HHhhc
Q 011369          252 LAFVI  256 (487)
Q Consensus       252 ~~~~~  256 (487)
                      ..+++
T Consensus       444 ~~~~~  448 (467)
T PRK09556        444 LMAIV  448 (467)
T ss_pred             HHHHH
Confidence            54443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.40  E-value=1.4e-12  Score=128.91  Aligned_cols=154  Identities=8%  Similarity=-0.077  Sum_probs=124.4

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc-----ch------hHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIA  174 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~------~~~~l~  174 (487)
                      |.+.+++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++.++.++     .+      +...+.
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            6677788998888899999999999999999999999999999999998888777766652     11      333333


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       175 ~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      ...++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.++.+|++.|++.++++++.+++.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence            33333333333345667778899999999999999999999999999999999999888999999999988888777777


Q ss_pred             hcccc
Q 011369          255 VIKPL  259 (487)
Q Consensus       255 ~~~p~  259 (487)
                      ++.||
T Consensus       468 ~~~~~  472 (481)
T TIGR00879       468 FFLPE  472 (481)
T ss_pred             eeccc
Confidence            66665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.40  E-value=9e-12  Score=121.62  Aligned_cols=150  Identities=20%  Similarity=0.217  Sum_probs=136.7

Q ss_pred             Cccc-cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+. +++|.++...|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.+..+++-++.|++.
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAW  321 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            5554 568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      ....+...+.+.+..|++.|||+++++++....+..+|.++.|.+.+.+|-+..+.+.++..++..++...
T Consensus       322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887765555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.38  E-value=3.8e-12  Score=121.62  Aligned_cols=145  Identities=10%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      |...++.|.++.+.+++.+.+.++..+++++.|++.||+|+|+++..+.++..++.+...  + ...+....++.|++..
T Consensus       224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence            555566788988999999999999999999999999999999999888888777665443  2 2344567788888888


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      ...|....++.|..|+++++...+.+....++|..+||.++|.+.++.+|++.|.+.+++.++..+..
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            88899999999999988888888888889999999999999999999999999999888776554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=1e-12  Score=126.36  Aligned_cols=139  Identities=8%  Similarity=-0.008  Sum_probs=114.0

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH--HHhhc--chhHHHHHHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--a~~~~~l~~~r~l~G~g  183 (487)
                      +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  +...+  .++.+.+++..++.|++
T Consensus       246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (394)
T TIGR00883       246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI  325 (394)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            447788999999999999999999999999999999999998775554443333  12222  35677778888999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHH-HhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHH
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  246 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~  246 (487)
                      .+...+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.++.| |++.++...+..
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            9999999999999999999999999984 56667899999999999999888 988877776544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=1.5e-12  Score=125.77  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=115.9

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH-HHhhcchhHHHHHHHHHHhhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      .+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..+.. ......++.+.+.+..++.|+..+
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            3556789999999999999999999999999999999999999988877653332 233445677777777788888777


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHH
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGE  242 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~  242 (487)
                      ...+....++.|.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+...
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            7788888999999999999999999999999999999999999999888 88776654

>TIGR00897 2A0118 polyol permease family

Probab=99.35  E-value=1.3e-11  Score=118.73  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=119.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh-hHHHHHHHHHHHhh-----cchhHHHHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCG-----SSFDFWSIAICRML  179 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~-----~a~~~~~l~~~r~l  179 (487)
                      |.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+...     ..++.+.+++..++
T Consensus       246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (402)
T TIGR00897       246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA  325 (402)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence            5566778999999999999999999999999999999999988764 33333333333322     23467778888999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      .|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+..||+..|++.+++.++..++.+|.
T Consensus       326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887655 4456677655 6899999999999999999999999999999999999999998887777666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.33  E-value=5.8e-13  Score=127.98  Aligned_cols=339  Identities=15%  Similarity=0.089  Sum_probs=207.3

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc---C--CCeEehhHHHHHHHHHHHhhcc----hhHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH---N--PFRLIGVGLSVWTFATAGCGSS----FDFWSIAIC  176 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~  176 (487)
                      |.+++++|+++++...+.+...+... .-+++|.++|.+   |  ||+-++++.++..++.+..+..    .+.....+.
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            77899999999999988888888775 467789999986   3  5556777777776655555543    357777777


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCC--CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      -++..+|......++-+++.|...  +++||...+.......+|.+++..++|.+.+..++|+.|.+.+++..+..+..+
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            888899999999999999999974  344888899999999999999999999999999999999999988887777777


Q ss_pred             hccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHH
Q 011369          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (487)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (487)
                      ++.+|. +.+ +.++.....+++.                               .......++..+..++.++.|.++.
T Consensus       173 ~~~~e~-~~~-~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~i~~  219 (433)
T PF03092_consen  173 FLLEER-KVR-PADEVFSFGKEEV-------------------------------PCLFGSFREQLSELWRALQQRAIWQ  219 (433)
T ss_pred             Hhhhhc-ccc-ccchhhccccccc-------------------------------chhhHHHHHHHHHHHHHHhhhHHHH
Confidence            776651 111 1110000000000                               0000113344456667777788777


Q ss_pred             HHH-HHHHHHhhheeeeecccceeeeccc---ccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHH
Q 011369          335 NVL-GYIAYNFVIGAYSYWGPKAGYNIYH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  410 (487)
Q Consensus       335 ~~~-~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  410 (487)
                      ..+ ..++............-.+..+..+   +++...  .... +.+.++.+++..+-.++.+++..+ +++....++.
T Consensus       220 ~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~--~~~~-~vg~~~~l~g~~~y~~~~~~~~~R-~~~~~t~~~~  295 (433)
T PF03092_consen  220 PILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFY--GTLS-IVGSIASLLGILLYRKYFSNWSWR-RIFVVTTLVS  295 (433)
T ss_pred             HHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHH--HHHH-HHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence            665 3333332221111100011122222   333222  2222 334445555555555554443322 4555544444


Q ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcccee
Q 011369          411 AISCLTAF----------CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  480 (487)
Q Consensus       411 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~  480 (487)
                      ++..+.-.          ..++.+..+.-..+........+.+...+..+..|+..-|+..++. .....+|..++..++
T Consensus       296 ~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall-~s~~Nlg~~~s~~lg  374 (433)
T PF03092_consen  296 VLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALL-ASFSNLGSSVSSTLG  374 (433)
T ss_pred             HHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHH-HHHHHHHHHHHHHHH
Confidence            43332211          0122233333444455555556666677788999999999999997 556665666655554


Q ss_pred             eee
Q 011369          481 GVL  483 (487)
Q Consensus       481 g~l  483 (487)
                      ..+
T Consensus       375 ~~l  377 (433)
T PF03092_consen  375 AFL  377 (433)
T ss_pred             HHH
Confidence            433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.33  E-value=1.1e-11  Score=118.45  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=123.0

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~  186 (487)
                      ...+|.|.+..+.|++.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+.+++.+.+++..++.|++.+.
T Consensus       230 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        230 IYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999998888888899999999999999999999


Q ss_pred             hhhhhhhhhhhcCCCCchhHHHHHHH-hhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 011369          187 FISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (487)
                      ..+....++.+. +++++++..+.+. ....+|..+||.++|.+.+.+|+ ..|+..+++.++..+
T Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            999999998887 5567788899886 55678889999999999999888 567777666554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.30  E-value=2.1e-11  Score=118.54  Aligned_cols=149  Identities=12%  Similarity=-0.038  Sum_probs=107.5

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc--CCCeEe-hh---HHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GV---GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (487)
                      +.+++|.+..+.++..+.+.++..++.++.|+++||+  ++|+.. ..   +..+..++..... ..+...+.+..+..|
T Consensus       270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  348 (434)
T PRK11663        270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIG  348 (434)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999999  333332 11   1121211112222 233334444444455


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      ++...........+.|.+|+++|++++|+.+....+|..++|.+.+.+.++.||+..|++.+++.++..+..+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        349 FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433222333456789999999999999999999999999999999999999999999999988877776665544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.28  E-value=1.7e-11  Score=117.81  Aligned_cols=144  Identities=8%  Similarity=0.044  Sum_probs=125.0

Q ss_pred             ccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhh
Q 011369          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (487)
Q Consensus       113 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~  192 (487)
                      +.+....|++.++..+...++.+..|++.||+|||+.+.++.++.+++..+.+.++|.+.+++.++++|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888999999999999999999999999999999999998888878889999999999999999887777777


Q ss_pred             hhhhhcCCCCchhHHHHH-HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      .++.+..+++.++...+. ++....+|..+++.++|.+.+..||+.+|.+.+++.++..++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  394 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVFT  394 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888888877666 6788999999999999999999999999999999887777665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.27  E-value=1.8e-11  Score=120.97  Aligned_cols=155  Identities=9%  Similarity=-0.020  Sum_probs=119.4

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--h-HH-HHHHHHHHhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~-~~-~l~~~r~l~G  181 (487)
                      |.+.+++|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ ....+-++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            667778888877777777788888999999999999999999999999999888877765431  1 11 2233344444


Q ss_pred             hhhhh-hhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh------hccccchHHHHHHHHHHHHHHHHHHh
Q 011369          182 VGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       182 ~g~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      ++.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.      +.+.++|++.|++.+++.++.+++.+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            44443 336778999999999999999999999999998888655543      44678899999999988887777777


Q ss_pred             hccccc
Q 011369          255 VIKPLQ  260 (487)
Q Consensus       255 ~~~p~~  260 (487)
                      ++.||+
T Consensus       455 ~~~~e~  460 (479)
T PRK10077        455 KFVPET  460 (479)
T ss_pred             hccccC
Confidence            666663

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.27  E-value=5.8e-11  Score=116.79  Aligned_cols=151  Identities=9%  Similarity=0.040  Sum_probs=121.2

Q ss_pred             CccccccccCccccchhhh-HHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHH---hhcc-hhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSS-FDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~a-~~~~~l~~~r~l~  180 (487)
                      |.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+.   .+.. ++.+.+.+.-+++
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4456678999999999974 667899999999999999999998877666655544332   2333 4555566666776


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      .+..|...+...++..+..+++.+++..++.+...++|..++++++|.+.+..||+..|.+.++++++..+...+.
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666677788899999999999999999999999999999999999999999999999998888876666555

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=6.9e-11  Score=114.92  Aligned_cols=150  Identities=13%  Similarity=0.050  Sum_probs=112.1

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc----chhHHHHHHHHHHhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGV  182 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~  182 (487)
                      .+.+++|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+....    .++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            345677887766555666666777888899999999999999988887766554433322    2334555566677788


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHh-hhhhhhhhHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHhhc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      +.+...+...+++.|.+|++.|+...++.+. +..+|..++|.+.+.+.+..  +|+..+...++..++..+..+..
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8888888889999999999999988888544 45588999999999987643  58888888877777666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=7.7e-11  Score=108.43  Aligned_cols=150  Identities=17%  Similarity=0.097  Sum_probs=127.7

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc-chhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+++..|.+.+.++++.-+|.++..+|....|+++|| +.|+.+.....+..+..+...+ .++.+..++.-++.|++.
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF  314 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            77888899999999999999999999999999999999 9999988887777776666555 455666677777788887


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +.........+++ ..++.+..+.++.....++|..+|..+||.+.+++|++...+..+++.++..++.++..
T Consensus       315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666666777 33579999999999999999999999999999999999999999999888777766554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.23  E-value=9.2e-11  Score=114.68  Aligned_cols=150  Identities=10%  Similarity=-0.044  Sum_probs=106.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc--CCCeEeh-hHHHHHHHHHHHhhc--chhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIG-VGLSVWTFATAGCGS--SFDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~-~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~  182 (487)
                      ++++.|.+..+.++..+.+.++..++.++.|+++||+  |||+... ....+..++.+...+  ..+.+.++++.++.|.
T Consensus       280 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  359 (452)
T PRK11273        280 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF  359 (452)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence            4555788888999999999999999999999999999  4554322 222223333222222  3345555555555565


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhh-hHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.++.||+..|++.++.+++.++....+.
T Consensus       360 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        360 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            44333333445678999999999999999888888765 5799999999999999999999887777666655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.22  E-value=1.3e-10  Score=112.35  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=131.6

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCC--eEehhHHHHHHHHHHHhhc--------chhHHHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAICR  177 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------a~~~~~l~~~r  177 (487)
                      -.+++|++..+...+.-+..+...+|++++|++.||+|.|  ++++++++++.+..+...+        .++-+.+++.-
T Consensus       308 a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a  387 (477)
T PF11700_consen  308 ATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA  387 (477)
T ss_pred             HHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence            5568999999999999999999999999999999999999  8999998888666666555        67888999999


Q ss_pred             HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhc
Q 011369          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       178 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      ++.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+..| -|+.+....++.++.+++.+++
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999998765 8888888877766655555433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=1.2e-10  Score=111.63  Aligned_cols=147  Identities=12%  Similarity=-0.064  Sum_probs=115.0

Q ss_pred             CccccccccCccccchhhhHHH-HHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc------chhHHHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRM  178 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l~~~r~  178 (487)
                      +...+|.|.+++++|++..... ....++.++.|++.||+|+|+.+.++..+.++..+....      .++...++...+
T Consensus       232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (390)
T TIGR02718       232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA  311 (390)
T ss_pred             hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence            3344668999999999988876 466778899999999999999988877665333322211      234445556666


Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCC-CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 011369          179 LVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (487)
Q Consensus       179 l~G~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~  252 (487)
                      +.+++.+...+.....+.+..++ +++++.+++.++..++|..+||.++|.+.++.||+..|++.+++.++..+.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            77777887878888887777776 889999999999999999999999999999999999999988776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.20  E-value=1.2e-10  Score=113.52  Aligned_cols=152  Identities=10%  Similarity=-0.060  Sum_probs=108.3

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHH---HHHHhhc--chhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF---ATAGCGS--SFDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~~~--a~~~~~l~~~r~l~G~  182 (487)
                      +++..|.++.+.++..+.+.++..++.+.+|+++||+++|+....+..+..+   +.+....  ..+.+...+.-++.|+
T Consensus       278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  357 (438)
T TIGR00712       278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF  357 (438)
T ss_pred             HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4445788999999999999999999999999999999765433334332221   1111112  2234444444455555


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhh-hhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG-VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +.............|.+|+++|+++.|+.+....+| ..++|.+.|.+.++.||...|++.++..++..+..+++.||
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       358 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            432222222346789999999999999998887776 57899999999999999999999888877777777777766

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.20  E-value=4.7e-11  Score=114.12  Aligned_cols=133  Identities=13%  Similarity=0.008  Sum_probs=102.1

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHH---HHHHHHHhhc--chhHHHHHHHHHHhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV---WTFATAGCGS--SFDFWSIAICRMLVG  181 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~---~~~~~~~~~~--a~~~~~l~~~r~l~G  181 (487)
                      .+.+++|.++.+.+++.+.+.++..++.++.|+++||.++|+........   ..++......  ..+...+++..++.|
T Consensus       242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  321 (379)
T TIGR00881       242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG  321 (379)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            35567899999999999999999999999999999986443332222211   1122222222  345566667777888


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHH
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  239 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f  239 (487)
                      +......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+++||++.|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            7666666667788999999999999999999999999999999999999999998764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.20  E-value=5.9e-11  Score=112.80  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=117.0

Q ss_pred             Cccccc-cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchh-HHHHHHHHHHhhhh
Q 011369          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-FWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-~~~l~~~r~l~G~g  183 (487)
                      |.+.++ +|.++.+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..++.|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  314 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG  314 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            555554 8999999999999999999999999999999999999999888888888888887774 88889999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  234 (487)
                      .+...+....++.|.+|+++|+++.++.+....+|..+++.+++.+.+++|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999887643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.18  E-value=1.1e-10  Score=113.46  Aligned_cols=137  Identities=11%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g  183 (487)
                      |.+.++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.....+  +...+.+..+..+.+
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (426)
T PRK12307        255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT  334 (426)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            555566788888899999999999999999999999999999998888877766555444322  222222222222222


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHH
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE  242 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~  242 (487)
                      .....+..+.++.|.+|+++|++++|+......+|..++|.+.+.+.++.|+....++.
T Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            22334556678899999999999999999999999999999999999988876543333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.18  E-value=1.6e-10  Score=112.48  Aligned_cols=131  Identities=9%  Similarity=-0.014  Sum_probs=98.3

Q ss_pred             Ccc-ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHH-H---hhcchhHHHHHHHHHHh
Q 011369          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-G---CGSSFDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~---~~~a~~~~~l~~~r~l~  180 (487)
                      |.+ ++.+|.+..+.++....+.++..++.+++|+++||+|||++++.+..+..+... .   ....+++..+.+..++.
T Consensus       262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (434)
T PRK15075        262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWL  341 (434)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            444 445799988889998899999999999999999999999988776544332221 1   11234455555556667


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHh-hhhhhhhhHHHHHHhhccccchH
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWR  236 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~wr  236 (487)
                      |++.+...+....++.|.+|+++|+..+++... +..++..++|.+.+.+.++.|++
T Consensus       342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            777777777777889999999999999998644 44445778999999999888864

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=2.2e-10  Score=99.68  Aligned_cols=150  Identities=11%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-------hhHHHHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRM  178 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~~l~~~r~  178 (487)
                      |++++.+|+|.+|.+.+.++-.+|..+ .++.|.+.|++|+|.++.+|.+...+|..+...+       .++|.+.+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            889999999999999999999999987 5889999999999999999999999888776542       47889999999


Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       179 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +.|.+.+....+......+.|| ++||++.|+.-...++++.+-..+...+.+.-.-+..+.+...+.++..+...++.
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            9999988888888888889998 58999999999999998877666665555543344444444444444444444443

>PRK10054 putative transporter; Provisional

Probab=99.17  E-value=1.6e-10  Score=110.77  Aligned_cols=144  Identities=17%  Similarity=0.081  Sum_probs=120.9

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-hhHHHHHHHHHHhhhhhhhhh
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      ++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..++.+..++.+...++ ++.+.++++.++.|+|.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777888888888888888999999999999999999988888888777664 678778888999999999888


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      |....++.+..|++.|+++.+..+ ...+|..+||.++|.+.++.|.+..|++.++...+..++.+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            988999999999999999988765 45589999999999999999998899887666555544444

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=2.6e-10  Score=112.39  Aligned_cols=130  Identities=10%  Similarity=0.107  Sum_probs=109.8

Q ss_pred             Ccccc-ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc---hhHHHHHHHHHHhh
Q 011369          106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G  181 (487)
                      |.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+.   ++.+.+.+.-++.|
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            43433 578889999999999999999999999999999999999999988887776665543   34455566778889


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      ++.+...+....++.+.+|+++++.+.++.+....+|..+|+.+++.+.+..++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999988999999999999999999999999999999999999999988766554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.16  E-value=2.5e-10  Score=106.26  Aligned_cols=149  Identities=12%  Similarity=0.115  Sum_probs=132.1

Q ss_pred             ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhh
Q 011369          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  190 (487)
Q Consensus       111 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~  190 (487)
                      +-+.+....|++.++..+.-++.-.+..++.+|+|.|+.++++.++..+=.+++++++|.+.+.+.+.+.|+-.+.....
T Consensus       253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            33455667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCCCchhHHHHHH-HhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          191 AAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       191 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      ...|+++.+|+|-.++...+. +.+.++|..+.+.++|.+.++.|.+.+|++.+.+.++..++..+.+++
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            999999999988877777774 788999999999999999999999999999999988888888888755

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.15  E-value=2.3e-10  Score=112.33  Aligned_cols=148  Identities=10%  Similarity=-0.020  Sum_probs=108.4

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCe-------EehhHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-------LIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  180 (487)
                      +.+++|.+..+.+++.+++.++..++.+++|+++||+|||+       .+.+..++.++..++.+..++.+..++.-++.
T Consensus       279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~  358 (476)
T PLN00028        279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF  358 (476)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998762       22333333344444555666766666667777


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +++.+...+...+++.+..| ++||.+.|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        359 SIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            77766666666677777655 68999999988877777777776543 22345799999999888777766665553

>TIGR00895 2A0115 benzoate transport

Probab=99.14  E-value=8.6e-11  Score=113.12  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=104.8

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      |.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+....+......++....++.+.+++..++.|++.+
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999954443333333333333335677788889999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhh
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  229 (487)
                      ...+....++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999875

>TIGR00898 2A0119 cation transport protein

Probab=99.14  E-value=5.7e-10  Score=111.05  Aligned_cols=137  Identities=11%  Similarity=-0.113  Sum_probs=111.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 011369          121 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDN  198 (487)
Q Consensus       121 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~g~g~~~~~~~~~i~~~  198 (487)
                      +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+...+....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566777889999999999999999999999988888887776654  5556666777788888888899999999


Q ss_pred             CCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      +|++.|+.++|+.+....+|.+++|.+.+ + ...++..++++.++..++..++.++ +||+
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            99999999999999999999999999988 3 3456778888888877776666544 4663

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=7.5e-10  Score=106.61  Aligned_cols=146  Identities=13%  Similarity=0.192  Sum_probs=108.0

Q ss_pred             CccccccccCccccchhhhHHH-HHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hcc-hhHHHHHHHH---
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR---  177 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r---  177 (487)
                      +.+.+++|.++.+.+++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+..   ++. ++.+.+++.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4466778999999999986654 5688999999999999999998877776665554333   343 4556655554   


Q ss_pred             -HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          178 -MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       178 -~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                       +..|++.+...+....++.+.+|.+++    ++++...++|..++++++|.+.+.+||+..|.+.++++++..++.+.
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence             345666666677777788877775544    55555667787777778999999999999999999888776555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=9.5e-10  Score=106.17  Aligned_cols=148  Identities=11%  Similarity=-0.040  Sum_probs=118.1

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~  182 (487)
                      +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++.++.     ++.+.+++.-++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            456789999899988888888999999999999999999999988888777777666543     356777888999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      +.+...+......... ++++||++.+.++....+|..+|+.+++.+.+..+|....+..++.+++..++..+.
T Consensus       322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9998777666655443 458999999999999999999999999999988887776666655555554444333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.12  E-value=2.1e-09  Score=92.10  Aligned_cols=173  Identities=18%  Similarity=0.140  Sum_probs=128.7

Q ss_pred             hhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc
Q 011369           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (487)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~  144 (487)
                      +++.++|.++.+..+....++.                   -..++.||+|+...+-+.+....-.+..+++.|.++||+
T Consensus       267 w~~~iicv~yyva~fPFi~lg~-------------------~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~  327 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLGP-------------------MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY  327 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh
Confidence            3566667777666555544443                   347889999999999999998888999999999999999


Q ss_pred             CCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHH
Q 011369          145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  224 (487)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  224 (487)
                      |++...+.+..+..+..= ..+.-+++.=+++..+.|+..+.........++...|+++.|++.+..++..++|..+.|+
T Consensus       328 G~n~~wv~~a~~~tl~~H-~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I  406 (459)
T KOG4686|consen  328 GFNLWWVASACILTLLGH-SGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI  406 (459)
T ss_pred             cceehhHHHHHHHHHHHh-hhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence            999887766554433221 1122234444678888999888777778888999999999999999999999999999999


Q ss_pred             HHHhhccccc---hHHHHHHHHHHHHHHHHHHhhcc
Q 011369          225 YGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       225 ~~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +++.+.++-|   |--.|.+......+..+..++..
T Consensus       407 iag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  407 IAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999997644   55555554444444444555554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.11  E-value=7e-10  Score=109.98  Aligned_cols=154  Identities=10%  Similarity=-0.056  Sum_probs=105.0

Q ss_pred             CccccccccCccccch------------hhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchh----
Q 011369          106 SGIQGDFKLNNFQDGV------------LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD----  169 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~------------~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~----  169 (487)
                      |.+.++.|.+..+.+.            ...+..++..++.+.+++++||+|||++++++.++.+++.++.++..+    
T Consensus       312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~  391 (502)
T TIGR00887       312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST  391 (502)
T ss_pred             HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            6666677776543221            123344566668889999999999999998888877776665554321    


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc----------cchHHHH
Q 011369          170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------LNWRYAF  239 (487)
Q Consensus       170 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~~wr~~f  239 (487)
                      ...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+.          .++...|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  471 (502)
T TIGR00887       392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL  471 (502)
T ss_pred             hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence            111111111122222224456677789999999999999999999999999999999888763          3456788


Q ss_pred             HHHHHHHHHHHHHHhhccccc
Q 011369          240 WGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      ++.+++.++..+.. ++.||+
T Consensus       472 ~i~~~~~~~~~i~~-~~lpEt  491 (502)
T TIGR00887       472 EIFALFMFLGILFT-LLIPET  491 (502)
T ss_pred             HHHHHHHHHHHHHh-eEeccC
Confidence            88888777665544 555774

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=5.7e-10  Score=102.70  Aligned_cols=132  Identities=11%  Similarity=0.047  Sum_probs=109.5

Q ss_pred             ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhh
Q 011369          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  190 (487)
Q Consensus       111 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~  190 (487)
                      .+|.++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999888888888777666665544333 3555889999999999


Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHH
Q 011369          191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  245 (487)
Q Consensus       191 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~  245 (487)
                      ..+...+..|+ +.+++.++. ....+|..++|++.|.+.+..|.+..|++..+.
T Consensus       251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999998885 456667775 556689999999999999999999998865443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2.5e-10  Score=111.00  Aligned_cols=152  Identities=17%  Similarity=0.187  Sum_probs=138.8

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC--CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g  183 (487)
                      |...++.+.++.+.+.+.++..+...++.+..|+++|+..  ++.+..+++++.+++.+.+.++++++.++...++.|++
T Consensus       322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC  401 (509)
T ss_pred             HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999999988  45567788888888899999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhcc
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      .|........++.|..+.++-..+.|+.....+++.++||++++.+.+..+ |...|+..++..++..+..++..
T Consensus       402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999888999999999999999999999999999999999999988777 99999999998777766555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=5.9e-10  Score=122.26  Aligned_cols=147  Identities=18%  Similarity=0.115  Sum_probs=126.1

Q ss_pred             ccccccccCcc-ccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          107 GIQGDFKLNNF-QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       107 ~i~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      .+.+++|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  337 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG  337 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            45667899988 99999999999999999999999999999999999999888888888888899999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      ...+...+++.+.+|+++||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+..
T Consensus       338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  406 (1146)
T PRK08633        338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYT  406 (1146)
T ss_pred             HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888888776653 2456667777666554444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=1e-09  Score=107.06  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=104.9

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-hhHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       115 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      ++.+.+++.++..++..++.+++++++||+|+|+++.++.++..++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999998888887776665 46777788889999999999999999


Q ss_pred             hhhhcCC-------CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      +++|..+       ++++|.+.|+.+....+|..+++.+.+.+.+..||
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998865       45689999999999999999999999998876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.10  E-value=1.1e-09  Score=104.89  Aligned_cols=144  Identities=13%  Similarity=-0.049  Sum_probs=117.6

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHH-HHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.+++|.+..+.+++.+.+.++..++.++.+++.||. +|+.++.+..+ .....++....++.+.+.+..++.|++.
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~  319 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF  319 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            556678899999999999999999999999999999995 45544444444 3333444456677888888999999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (487)
                      +...+...+++.+..| ++++++.++.....++|..+|+.++|.+.+..|++..++..+++.++..+
T Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            9999989989999887 56778888888899999999999999999999999999988776554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.5e-10  Score=105.25  Aligned_cols=177  Identities=15%  Similarity=0.053  Sum_probs=133.6

Q ss_pred             hhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc
Q 011369           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (487)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~  144 (487)
                      +.+..++++.+..+.-|..+..=.-                -.+.|..|.|..+.++..+.|-.+...|.+++|+++||+
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p----------------~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl  315 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGP----------------LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL  315 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3455556666666655544332100                236677899999999999999999999999999999996


Q ss_pred             --CCCeEehh-HHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-h
Q 011369          145 --NPFRLIGV-GLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-G  218 (487)
Q Consensus       145 --Grr~~l~~-~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G  218 (487)
                        |||....+ .++...++.+..-+++  |++...++-++.|+..-+-.-.......|..|++--|.+.|+...+..+ |
T Consensus       316 fkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G  395 (448)
T COG2271         316 FKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG  395 (448)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence              67765433 3333444444444444  5688888889999888777777777889999999999999999999888 8


Q ss_pred             hhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       219 ~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      ...+....+.+.+.+||...|.+..+.+++..++.....
T Consensus       396 a~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         396 AALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             HHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            888888889999999999999998887777666555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.10  E-value=5.4e-10  Score=107.31  Aligned_cols=147  Identities=12%  Similarity=0.022  Sum_probs=117.1

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |...+|.+.++.+.+++.+...++...+..+.+++.|| ++.|+.+..+.++.+++.++.+++++++.+.+..++.|++.
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~  311 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS  311 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            55556655577888998888887777666666777664 66677778888888888888888889888888889999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc---c-hHHHHHHHHHHHHHHHHH
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---N-WRYAFWGEAILMLPFAVL  252 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---~-wr~~f~~~~~~~~~~~~~  252 (487)
                      +...|...+++.|..|+++||+++|+.+....+|..+||.++|.+.++.   + -...+++.++..++..+.
T Consensus       312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9888999999999999999999999999999999999999999998763   3 245666555555554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.08  E-value=1.1e-09  Score=99.83  Aligned_cols=143  Identities=14%  Similarity=0.086  Sum_probs=126.4

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~  187 (487)
                      -++++|++..++..+.-...+..+++++++|+|.||+|.|+++.+++++..+.++..-+...-..+.++-.+.|+..|..
T Consensus       279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            34589999999999999999999999999999999999999999999999999998888887777888889999999999


Q ss_pred             hhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHH
Q 011369          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFA  250 (487)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~  250 (487)
                      +..+.++..+.+|+++-++.+|+++...-.+..+||.+-+.+.+.. +-|.-+....++..+.+
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl  422 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL  422 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence            9999999999999999999999999999999999999998887654 35666666655543333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.08  E-value=1.1e-09  Score=106.48  Aligned_cols=147  Identities=7%  Similarity=-0.005  Sum_probs=96.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh----cchhHHHHHHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~----~a~~~~~l~~~r~l~G~g  183 (487)
                      +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+...    ..++....+..-.+.+++
T Consensus       270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (432)
T PRK10406        270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI  349 (432)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            4566888888889989888888899999999999999999987776654433332111    122333222222323333


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhh
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      .+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ..| |...++..++..++..+..++
T Consensus       350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4444455678899999999999999998765543 2334777777554 344 656666665655555555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.07  E-value=1.2e-09  Score=103.67  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=123.5

Q ss_pred             cccccc-cCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-hhHHHHH----HHHHHhh
Q 011369          108 IQGDFK-LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIA----ICRMLVG  181 (487)
Q Consensus       108 i~~~~~-~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~----~~r~l~G  181 (487)
                      .-+|.| .+....+.+.++..+.-...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...    +...++|
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG  312 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHG  312 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhh
Confidence            455666 666777877788888888999999999999999999999999999998888887 5544433    3355799


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhh-hhhhhhhHHHHHHhhccccc------hHHHHHHHHHHHHHHHHHHh
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~~~------wr~~f~~~~~~~~~~~~~~~  254 (487)
                      +..+..+.++..++.+.+|++.|+++.+++... .++|..+|..++|.+.+++|      |...+.+.+++.++..++.+
T Consensus       313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764 68999999999999998765      55566666666666665555


Q ss_pred             hcccc
Q 011369          255 VIKPL  259 (487)
Q Consensus       255 ~~~p~  259 (487)
                      ++.+|
T Consensus       393 ~~fk~  397 (400)
T PF03825_consen  393 ILFKP  397 (400)
T ss_pred             hhccC
Confidence            55443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.06  E-value=1.6e-09  Score=103.65  Aligned_cols=151  Identities=12%  Similarity=0.028  Sum_probs=114.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh-cchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.+++.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            446666899999999999999999999999999999999999999988888887776554 3455666666777777766


Q ss_pred             hhhhhhhh-hhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          185 ASFISLAA-PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       185 g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      ....+... ....+..+++.++..  ..+....+|..+||.++|.+.+. .+|++.+.+.++...+.......+.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            54444434 344454455555544  34667889999999999999885 68999999998777666555555544

>TIGR00896 CynX cyanate transporter

Probab=99.06  E-value=6.6e-10  Score=105.21  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=104.1

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+.++.|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+.++..+.+++.++..+.++..... .-++.|++.
T Consensus       221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~  299 (355)
T TIGR00896       221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ  299 (355)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence            556667899999999999999999999999999999999 566677777788877777777665433332 457789999


Q ss_pred             hhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q 011369          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  234 (487)
                      +...+.....+.+..+ +++++...++.+....+|..++|.+.|.+.++.|
T Consensus       300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9988888777765554 5667899999998888999999999999998765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.05  E-value=1.4e-09  Score=118.97  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc--------------------
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------------------  167 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------------------  167 (487)
                      +.+.+|.++.+.|++.+++.++..++.++.|+++|+.++++.+..+.++.+++.+..++.                    
T Consensus       252 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  331 (1140)
T PRK06814        252 AKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK  331 (1140)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence            455689999999999999999999999999999999888888777777766666544443                    


Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc-cccchHHHHHHHHHHH
Q 011369          168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILM  246 (487)
Q Consensus       168 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~wr~~f~~~~~~~  246 (487)
                      ++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++++.+. ...++...|++.+++.
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  411 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALAN  411 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            678888899999999999999999999999999999999999999999999999999998887 3456777777666654


Q ss_pred             HHHHHHH
Q 011369          247 LPFAVLA  253 (487)
Q Consensus       247 ~~~~~~~  253 (487)
                      ++..+..
T Consensus       412 ~~~~~~~  418 (1140)
T PRK06814        412 LIVAILI  418 (1140)
T ss_pred             HHHHHHH
Confidence            4444333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.04  E-value=1.8e-09  Score=100.94  Aligned_cols=148  Identities=18%  Similarity=0.108  Sum_probs=134.6

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      .+|.+..+...|........|-.+.-++.+++..|+|+-+++.+++.+..+=.+.....+|.|+.+-..+++|+..+.++
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW  477 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW  477 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence            46677777788888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhh-hhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      .+..+|+++..||+-|..+.++++.. .++|--+|.++||.+.+.++=|..|++.++.+++.+++...+
T Consensus       478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998654 679999999999999999999999999999888777665554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=2.9e-09  Score=90.38  Aligned_cols=308  Identities=13%  Similarity=0.097  Sum_probs=176.8

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      ..+-+.++....++|.+.-...-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.++++-.++++|.+-|+..+
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTs  139 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATS  139 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHH
Confidence            345667888888998888877778888899999999999999987666666655443 4567899999999999999999


Q ss_pred             hhhhhhhhh-hhhcCCCCc-hhHHHHHH-----HhhhhhhhhhHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHhhc
Q 011369          186 SFISLAAPF-IDDNAPVPQ-KTAWLSMF-----YMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       186 ~~~~~~~~~-i~~~~~~~~-r~~~~~~~-----~~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      ....+--++ +.|...++. -..+.+..     ..+..+-.+++.+.+..+.++++  --.+|-..+.+..+..   ...
T Consensus       140 LLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm---Avi  216 (454)
T KOG4332|consen  140 LLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM---AVI  216 (454)
T ss_pred             HHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH---HHH
Confidence            888877665 577653321 11122211     13334445556666666666543  3345544433222222   122


Q ss_pred             cccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHH
Q 011369          257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (487)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (487)
                      +..|-.+.+++.+.+...                                          .+.....+.+..++++.+..
T Consensus       217 l~~W~ENygdps~~kdll------------------------------------------tqf~gaa~aiaSD~ki~LLG  254 (454)
T KOG4332|consen  217 LSSWSENYGDPSENKDLL------------------------------------------TQFKGAARAIASDEKIALLG  254 (454)
T ss_pred             HhhhhhccCChhhhHHHH------------------------------------------HHhhHhHHHHhcchHHHHHH
Confidence            233333333333322221                                          11122334455555555444


Q ss_pred             HHH-HHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHH
Q 011369          337 LGY-IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (487)
Q Consensus       337 ~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (487)
                      ... .+-...+..+..|.|..--+..+.+. .. +.+-+.++..+|+-+..++..|-..+..   ..+.+...+..+.+.
T Consensus       255 ~iqsLFE~smytFVFLWTPaLspn~e~iPh-Gf-iFatFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~l~  329 (454)
T KOG4332|consen  255 AIQSLFEGSMYTFVFLWTPALSPNDEEIPH-GF-IFATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAALL  329 (454)
T ss_pred             HHHHHHhhhhheeeeeecccCCCCcccCCc-hh-HHHHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHHHH
Confidence            433 33344455566677765544333321 11 1122234444454444444443333222   344444444444444


Q ss_pred             HHHHHH-------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHH
Q 011369          416 TAFCLS-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (487)
Q Consensus       416 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (487)
                      +.....       +....++.++++-.+.+..||.+.-+-.+..|.+.|++.+...
T Consensus       330 Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF  385 (454)
T KOG4332|consen  330 LPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF  385 (454)
T ss_pred             HHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence            333321       2334466777788889999999998888999989998877654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1.3e-09  Score=103.57  Aligned_cols=155  Identities=11%  Similarity=-0.056  Sum_probs=123.1

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch---hHH------HHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAIC  176 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~------~l~~~  176 (487)
                      ..+-++-|++..+..+.+....+...+..+++..+.||+|||+.+++++.+..+..++.....   +..      ..+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            456677799999999999999999999999999999999999999999999988887766542   111      12333


Q ss_pred             HHHhhhhhh-hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          177 RMLVGVGEA-SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       177 r~l~G~g~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      .++..++.+ +..|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..|= +.|.+..+++++..+..++
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            333333333 24678889999999999999999999988888887766666666666554 8889999999999999999


Q ss_pred             cccccc
Q 011369          256 IKPLQL  261 (487)
Q Consensus       256 ~~p~~~  261 (487)
                      .+||+.
T Consensus       453 ~lPETk  458 (485)
T KOG0569|consen  453 YLPETK  458 (485)
T ss_pred             hCcccC
Confidence            999953

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.01  E-value=4.4e-09  Score=97.41  Aligned_cols=322  Identities=15%  Similarity=0.048  Sum_probs=177.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Q 011369          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (487)
Q Consensus       120 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~  199 (487)
                      +.+.-+-.+...+.-+.+.++.+|+..+.=..++.++..++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44455555666677777888889887665566777788899999999999999999999999999988887777654 55


Q ss_pred             CCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcc
Q 011369          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  277 (487)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  277 (487)
                      ++    ..++-+.++.+.++++|+..-..+.. .+  -|..+++...+.++..+..++.+|++.......+....  .+.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~--~~~  213 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE--DEA  213 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC--Ccc
Confidence            53    35788888888888888877655555 44  47888888877766666666666543221111110000  000


Q ss_pred             cccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeeccccee
Q 011369          278 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG  357 (487)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  357 (487)
                      .         ++...+    +..+.+.+.    ......++.++..|.++.  ...-..+.++.......++..   ...
T Consensus       214 ~---------~~~~~~----~~~~~~~~~----~~~~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~~---tl~  271 (402)
T PF02487_consen  214 E---------DDLLES----ETSESKPDS----SSKLSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVAP---TLL  271 (402)
T ss_pred             c---------cccccc----ccccccccc----cchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchHH---Hhc
Confidence            0         000000    000000000    000111112222232222  222233344444433333322   221


Q ss_pred             eeccccc-ccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 011369          358 YNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT---AFCLSSLYGFLALFTV  432 (487)
Q Consensus       358 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  432 (487)
                      ......+ .... .......++.++++-...++  |+  |+.   +++...-.+-.+..++   ..+.++.|..+++.+.
T Consensus       272 fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~l---wils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~  344 (402)
T PF02487_consen  272 FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRL---WILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFY  344 (402)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            1111111 2222 33444555555555433221  22  211   2222222222222221   2234566777777788


Q ss_pred             HHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccce
Q 011369          433 GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (487)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~  479 (487)
                      -|+..|..+......+.++.++++|..++|.. .....+|..++..+
T Consensus       345 eGLlGGa~YVNtF~~I~~~~~~~~REFslg~v-svsds~GI~lAgll  390 (402)
T PF02487_consen  345 EGLLGGASYVNTFYRISEEVPPEDREFSLGAV-SVSDSLGILLAGLL  390 (402)
T ss_pred             HHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence            88888888888888889999999999999996 66666665544433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=1.4e-09  Score=99.23  Aligned_cols=150  Identities=15%  Similarity=-0.035  Sum_probs=121.3

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-------hhHHHHHHHHHH
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRML  179 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~~l~~~r~l  179 (487)
                      .++++|+.++.+.|.+.+.+.+...+..+.+|+|+||+|.+|++.+......++..+.++.       .+....++.-+.
T Consensus       244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  323 (417)
T COG2223         244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA  323 (417)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence            3778899999999999999999999999999999999999999999988888888877765       344444444444


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhcc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      .++..|.-......++..++|+ +-|.+.|+.....++|...-|..-+...+..| ++..|++...+.+++.+..+...
T Consensus       324 l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         324 LFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444567788888875 88999999999999999888888777776666 99999999998888887776654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.01  E-value=2.1e-09  Score=105.73  Aligned_cols=149  Identities=15%  Similarity=0.041  Sum_probs=104.4

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh--------hHHHHH--HHHHHHhhc-chhHHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG--------VGLSVW--TFATAGCGS-SFDFWSIAIC  176 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~--------~~~~~~--~~~~~~~~~-a~~~~~l~~~  176 (487)
                      +.+.+|.+..+.++..++..++..++.++.|+++||+++|+...        .+....  ++..+.... ..+....++.
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII  367 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            45678999999999999999999999999999999987654321        111111  111111111 2344444555


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHH
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---LNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      -.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+.   .+|+..|.+.++..++..++.
T Consensus       368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       368 LTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            5555555555555555556677765 899999999999999999999999988764   349999999988777766655


Q ss_pred             hhcc
Q 011369          254 FVIK  257 (487)
Q Consensus       254 ~~~~  257 (487)
                      .+..
T Consensus       447 ~~~~  450 (465)
T TIGR00894       447 LIFG  450 (465)
T ss_pred             eeee
Confidence            5443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.99  E-value=1.8e-09  Score=104.17  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             Ccccccc--ccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeE-ehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          106 SGIQGDF--KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       106 ~~i~~~~--~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      |.+.+++  +.+..+.++..+...++..++.+.+|+++||++||+. .....++.+++..+....++....+++-.+.++
T Consensus       266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (412)
T TIGR02332       266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM  345 (412)
T ss_pred             HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            5555554  5677888999999999999999999999999998774 333444444433322222222222222223333


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHH
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL  245 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~  245 (487)
                      |.....+.......|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |++.|++.++.
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            3333334444555788999999999999999999999999999999998874 99999877654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.96  E-value=5.8e-09  Score=103.18  Aligned_cols=124  Identities=20%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVG  183 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~g  183 (487)
                      .+++.+|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++..++.++...   .++.+...+..++.|+|
T Consensus       285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g  364 (495)
T PRK14995        285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS  364 (495)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            355667999999999999999999999999999999999999998888888777665543   34666777888999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  230 (487)
                      .|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.94  E-value=1.1e-08  Score=98.10  Aligned_cols=144  Identities=11%  Similarity=0.053  Sum_probs=114.4

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~  187 (487)
                      +++.+|.++.+.|++.+.+.++..++++..+++.||+++|+++..+. +.++..++.++.++++...+..++.|++.+..
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~  310 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFF  310 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            55678999999999999999999999999999999999999888775 44455555566778887888888999999988


Q ss_pred             hhhhhhhhhhcCCCCc-hhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011369          188 ISLAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       188 ~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      .+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ ...|-|..+.+.+...+..+.+.
T Consensus       311 ~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        311 VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            8888888888766654 79999999999999999999998866 45565555555444433433333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.93  E-value=3.4e-09  Score=104.99  Aligned_cols=127  Identities=16%  Similarity=0.201  Sum_probs=110.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc----chhHHHHHHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~g  183 (487)
                      +++.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+    ..+++.+....++.|+|
T Consensus       282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  361 (485)
T TIGR00711       282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG  361 (485)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999998888888877662    23567777888999999


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  234 (487)
                      .+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++..
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~  412 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT  412 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888888999999999999999999999999999988876433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=7.4e-09  Score=100.45  Aligned_cols=140  Identities=10%  Similarity=-0.121  Sum_probs=114.1

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      ++.+|.++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. -+..-++.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999888888777776666666543 3456678999999999


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHH
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAV  251 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~  251 (487)
                      |...+...|..++ +.+.+.++... ..+|..++|++.|.+.+..| -|..|++..+..+....
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999875 56777777764 44678888899999998887 78888877555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.91  E-value=1.9e-08  Score=96.37  Aligned_cols=133  Identities=14%  Similarity=0.196  Sum_probs=103.3

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~  182 (487)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+.     ++...+++..++.|+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            455789999999999999999999999999999999999999888888777776665543     234556667788999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccchHHHHHHH
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGE  242 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~wr~~f~~~  242 (487)
                      +.+...+.......|..| ++|+++.++.+..... |.+.++.++ .+.+..+|...+...
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~~  371 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSCL  371 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHHH
Confidence            999999999999999887 6899999998776654 555555554 555544555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.90  E-value=6.6e-09  Score=96.30  Aligned_cols=144  Identities=22%  Similarity=0.352  Sum_probs=120.0

Q ss_pred             CccccccccCc--cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchh--HHHHHHHHHHhh
Q 011369          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~l~~~r~l~G  181 (487)
                      +.+..+++.+.  .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+  .+.+++.|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  105 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            55666666555  47899999999999999999999999999998888888766666777777766  999999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCC-CchhHHHHHHHh-hhhhhhhhHHHHHHhhccc--cchHHHHHHHHHHHHHH
Q 011369          182 VGEASFISLAAPFIDDNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLPF  249 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~~wr~~f~~~~~~~~~~  249 (487)
                      ++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+||+.|.+........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            99999999999999999997 689999999988 5888888998877766653  67999777776655443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.89  E-value=4.1e-09  Score=99.83  Aligned_cols=111  Identities=9%  Similarity=-0.035  Sum_probs=94.3

Q ss_pred             CccccccccCccccchhhhHHH-HHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----------hhHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------FDFWSI  173 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------~~~~~l  173 (487)
                      |...+++|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.+.+
T Consensus       233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (356)
T TIGR00901       233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML  312 (356)
T ss_pred             HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence            4455568999999998887766 6788999999999999999999988888887776655442           456778


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhh
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  216 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  216 (487)
                      ..+.++.+++.+...+...+++.|.+|+++||+.++++++..+
T Consensus       313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999887654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.89  E-value=6.1e-09  Score=100.07  Aligned_cols=134  Identities=9%  Similarity=-0.070  Sum_probs=96.7

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~  187 (487)
                      +.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+..+..-.+.+.|.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999889999999999999999999999999999999999999988888888887766655555555555544443


Q ss_pred             hhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHH
Q 011369          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  246 (487)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~  246 (487)
                      .+.  ....+..|.++|+   +.......++..+++.+++.+.++.|+.....+.+.+.
T Consensus       310 ~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        310 FGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             hHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            333  2334455554553   44445556777788888888887777766555555443

>PRK09848 glucuronide transporter; Provisional

Probab=98.89  E-value=8.7e-09  Score=100.77  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA  185 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g  185 (487)
                      +++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+  +++.+++..++.|+|.+
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            3445676655444444445677888999999999999999999999998888877776654  67777888899999999


Q ss_pred             hhhhhhhhhhhhcCCCC-------chhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          186 SFISLAAPFIDDNAPVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      ...+...++.+|..+.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999988754       459999999999999999999998877654443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.85  E-value=4.6e-08  Score=95.06  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhhhhhh
Q 011369          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFIS  189 (487)
Q Consensus       112 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g~~~~  189 (487)
                      ++.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+
T Consensus       256 l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  256 LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV  334 (428)
T ss_pred             hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc
Confidence            4433 6778888899999999999999999999999999999999999999988886  999999999999999999999


Q ss_pred             hhhhhhhhcCCC-------CchhHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q 011369          190 LAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (487)
Q Consensus       190 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  234 (487)
                      ...++++|..+.       ++.|...|......-+|..+++.+.+.+.+..|
T Consensus       335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            999999999873       446899999999999999999998887765433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.84  E-value=1.8e-07  Score=88.46  Aligned_cols=322  Identities=13%  Similarity=0.074  Sum_probs=174.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc------c--h-------hHHHHHHHHHHhhhhhhhh
Q 011369          123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------S--F-------DFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       123 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a--~-------~~~~l~~~r~l~G~g~g~~  187 (487)
                      .-.-.+...+.++..|.+.||..|.++.-.+++..-+...+++.      .  +       -...+++.-.+.|.-.-..
T Consensus        44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~La  123 (432)
T PF06963_consen   44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLA  123 (432)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            33445567788899999999999999888777664333222221      1  1       1222222222333222211


Q ss_pred             h-hhhhhhhhhcC------CCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          188 I-SLAAPFIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       188 ~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      . ....++=.||.      +++.+.+.++.+.-.=.+..+++|++.|.+.+..+.+...++.++..++..++=+++...-
T Consensus       124 s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~V  203 (432)
T PF06963_consen  124 SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARV  203 (432)
T ss_pred             HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11222224443      3445667777777777788999999999999988999888888888877776655554221


Q ss_pred             cCC---CCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHH
Q 011369          261 LKG---FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (487)
Q Consensus       261 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (487)
                      .+.   ...+++.+.......          .+       +..+........+...+..++...+++.-++.+.+.....
T Consensus       204 Y~~~P~L~~~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a  266 (432)
T PF06963_consen  204 YNSVPALAVKKRSSESESSSD----------EE-------SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA  266 (432)
T ss_pred             HHhChHhcCCCCCcccccccc----------cc-------ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH
Confidence            111   111111100000000          00       0000000000111111233344456666777777766555


Q ss_pred             HHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHH--
Q 011369          338 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC--  414 (487)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~--  414 (487)
                      ..+++.. ..++......|+.+. |+++... .+-....+.++.|+++..++.+|+|..+     .-.++......++  
T Consensus       267 lalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr-----~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  267 LALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVR-----AGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHHH
Confidence            5555554 334566667788775 7776554 4445666788899999999999999873     3333333222222  


Q ss_pred             -HHH-HHHH------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHH
Q 011369          415 -LTA-FCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  468 (487)
Q Consensus       415 -~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~  468 (487)
                       ... +...      +...++....+.-++.-..=-....++.+.+|+++||...|..+...
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~  401 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQ  401 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHH
Confidence             212 2212      12223333333333333333345777888999999999999974433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.84  E-value=2.6e-09  Score=99.85  Aligned_cols=164  Identities=10%  Similarity=-0.007  Sum_probs=128.2

Q ss_pred             hhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccch
Q 011369          318 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS  397 (487)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  397 (487)
                      ..+.+...++.++....+.+...+.+.+...+.+++=-++++..+.+...-...+....+-++.-+..+++.+|+|+-  
T Consensus       359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--  436 (618)
T KOG3762|consen  359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--  436 (618)
T ss_pred             HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--
Confidence            344555466777777776666666666666666666566777554443222333455577788889999999999998  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCcc
Q 011369          398 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (487)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p  477 (487)
                         +++..+.....+=.+......+.|..+..-++-++..+..|..+.+++....||+.+.++.++.......+|-.+|.
T Consensus       437 ---~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs  513 (618)
T KOG3762|consen  437 ---NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS  513 (618)
T ss_pred             ---ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence               67777777777777777788899999999999999999999999999999999999999999998888888999999


Q ss_pred             ceeeeeecc
Q 011369          478 PLVGVLQVC  486 (487)
Q Consensus       478 ~~~g~l~~~  486 (487)
                      +++|.+.+.
T Consensus       514 lIGG~~v~~  522 (618)
T KOG3762|consen  514 LIGGFVVER  522 (618)
T ss_pred             hhhhhhhee
Confidence            999987654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.82  E-value=5.3e-08  Score=95.44  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=116.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHH----hhhh-cCCCeEe--hhHHHHHHHHHHHhhc---------chhHHHHHHHHHHhhh
Q 011369          119 DGVLSSAFMVGLLVASPIFAS----LAKS-HNPFRLI--GVGLSVWTFATAGCGS---------SFDFWSIAICRMLVGV  182 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~g~----l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------a~~~~~l~~~r~l~G~  182 (487)
                      .+++.++..+...+.+++..+    +.+| .+++...  .+|.++.+++.+..++         ..|++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            578888888888888888654    4444 2333433  6788888888777664         4699999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (487)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.++.......+|...|...++..++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988777778999999988888777777666544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.82  E-value=2e-08  Score=98.13  Aligned_cols=125  Identities=10%  Similarity=-0.017  Sum_probs=111.5

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc----------chhHHHHHHHHHH
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRML  179 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------a~~~~~l~~~r~l  179 (487)
                      +++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+....          .++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            578999999999999999999999999999999999999999999999988765432          1444456677889


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  234 (487)
                      .+++.+........++.+..|++++|...+++++..++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999987665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11043 putative transporter; Provisional

Probab=98.81  E-value=6.9e-08  Score=93.07  Aligned_cols=131  Identities=8%  Similarity=-0.064  Sum_probs=101.5

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hc--chhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS--SFDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--a~~~~~l~~~r~l~  180 (487)
                      |.+.+++|.++.+.++....+.++..++.+..+++.||+|+|+.+....+..+++.+..   ..  .++.+.+++.-.+.
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM  306 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            55667789999999998888889999999999999999999987665555544443322   11  34566666777888


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHH
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY  237 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~  237 (487)
                      |++.+...+.......|..| ++|+++.++++.....+..+++.+.+.+.+...-..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            99999999988888878776 589999999999888888888888888876443333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.79  E-value=4.4e-08  Score=92.63  Aligned_cols=143  Identities=8%  Similarity=-0.094  Sum_probs=99.3

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCC---eEeh-hHHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF---RLIG-VGLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr---~~l~-~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (487)
                      |.+-++.|.+.. .+...++..+...+   ..++++||..||   +... ...++.++.....+++.+....++.-++.|
T Consensus       216 p~~L~~~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  291 (368)
T TIGR00903       216 EAALRPAGLEDI-AGDAVALAILAGLI---GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG  291 (368)
T ss_pred             HHHHHHCCCChH-HHHHHHHHHHHHHH---HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            555566676653 45555554444444   457788887654   3322 234444444444455555555555666677


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      ++.....+....+.+|.+|++.|+++.|+.+....+|..++|++.+.+..  +-+..|.+.+++.++..+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            77777778788999999999999999999999999999999988877763  677888888887777666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.78  E-value=2.5e-07  Score=88.59  Aligned_cols=253  Identities=13%  Similarity=0.051  Sum_probs=151.6

Q ss_pred             CccccccccC-----ccccchhhhHHHHHHHHH-HHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc----h-------
Q 011369          106 SGIQGDFKLN-----NFQDGVLSSAFMVGLLVA-SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F-------  168 (487)
Q Consensus       106 ~~i~~~~~~s-----~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----~-------  168 (487)
                      .++++.+.++     .+.+.++-+...+..++. .++.+++++|++|++++-+....+.....++++.    +       
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            5677777663     357888888888877776 8999999999999999888877777766666554    1       


Q ss_pred             --------------------hHHHHHHHHHHhhhhhhhhhh-hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH
Q 011369          169 --------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (487)
Q Consensus       169 --------------------~~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  227 (487)
                                          +.|...+.-+...+-...... .-..++.|.+..+|-.|..+++..+.++|.++++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                123333444445555555554 77889999999999999999999999999999998888


Q ss_pred             hhcc--------ccchH----HHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccc
Q 011369          228 VVGS--------HLNWR----YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (487)
Q Consensus       228 ~l~~--------~~~wr----~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (487)
                      ++.+        ...|.    ..+.+.++..++...+ ...+.+....  +++..+.. ++                   
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~-~~-------------------  243 (472)
T TIGR00769       187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILL-YWWVNRNVLT--DPRSYNPA-LK-------------------  243 (472)
T ss_pred             HHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccC--Cccccchh-hc-------------------
Confidence            7762        12342    2333333333333333 3332221110  01000000 00                   


Q ss_pred             hhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-e---ee
Q 011369          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M---FG  371 (487)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~---~~  371 (487)
                             ++       ..+...+..+.++.++++|.++.+++...+++.....+..-.-....+.+..+.... .   +.
T Consensus       244 -------~~-------k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~  309 (472)
T TIGR00769       244 -------EK-------KVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFS  309 (472)
T ss_pred             -------cc-------cCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                   00       001123445778889999999888888777766554443322233333332111111 1   12


Q ss_pred             ceeecccchhhhhhhhhHhhhccc
Q 011369          372 GVTIVCGIVGTISGGFILDQMGAT  395 (487)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~  395 (487)
                      ...++..++..++.+++.+|+|-+
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            233344445566668888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.77  E-value=1.7e-09  Score=75.76  Aligned_cols=77  Identities=27%  Similarity=0.317  Sum_probs=71.8

Q ss_pred             CCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHH
Q 011369           98 DKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA  174 (487)
Q Consensus        98 ~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~  174 (487)
                      +|.|+|.+|.+++|.++|.++.||+.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            57788999999999999999999999999999999999999999998889999999999999999999999877653

Note that many members are hypothetical proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.77  E-value=1.1e-08  Score=91.10  Aligned_cols=129  Identities=6%  Similarity=-0.016  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhH
Q 011369          127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  206 (487)
Q Consensus       127 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~  206 (487)
                      ++.-.-|.++.+++.||+|||+.+..+.++++++.++...+.+-..+.+.-+..-+..++.+.+.++|..|.+|.+-|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            44556788999999999999999999999999999887776543333333333333344566778999999999999999


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          207 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       207 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      ..|.-..+.-+|.++.|.++ ...+ .+-..+..+.+.+.++.++...+++
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeee
Confidence            99999999999999999998 3322 2233556666677677777666664

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.77  E-value=1.5e-08  Score=95.80  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=104.3

Q ss_pred             Cc-cccccccC-ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch---hHHHHHHHHHHh
Q 011369          106 SG-IQGDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLV  180 (487)
Q Consensus       106 ~~-i~~~~~~s-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~~l~~~r~l~  180 (487)
                      |. +.+++|.+ ..+.+++.++..++..++.++.|+++||+|+|+...+......++.+...+..   +....++.-++.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLI  309 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44 48889999 78999999999999999999999999999998888888777777777666554   457778888999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHH
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (487)
                      |++.+...+....++.|.+|+++||++.|+.+...++|..+||
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.77  E-value=1.6e-07  Score=94.19  Aligned_cols=149  Identities=17%  Similarity=0.138  Sum_probs=122.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcch--------hHHHHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF--------DFWSIAICRM  178 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~--------~~~~l~~~r~  178 (487)
                      +.+.+|.+......+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.        ....++++-.
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa   93 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA   93 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence            456678888888888888888889999999999998 5999999999999999988877642        1234667888


Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCCC---chhHHHHHHHhhhhhhhhhHHHHHHhhccc-------cchHHHHHHHHHHHHH
Q 011369          179 LVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLP  248 (487)
Q Consensus       179 l~G~g~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~wr~~f~~~~~~~~~  248 (487)
                      +..+|.|++-|...+...|.++++   +|-..+.++..+.++|+.+++++...+.+.       .+|...|.+.++..++
T Consensus        94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i  173 (654)
T TIGR00926        94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL  173 (654)
T ss_pred             HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence            889999999999999999999754   367788899999999999999998888643       3699999999888777


Q ss_pred             HHHHHhhc
Q 011369          249 FAVLAFVI  256 (487)
Q Consensus       249 ~~~~~~~~  256 (487)
                      ..++....
T Consensus       174 a~lvf~~g  181 (654)
T TIGR00926       174 ALIVFMAG  181 (654)
T ss_pred             HHHHHHHh
Confidence            66655443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.76  E-value=4.9e-08  Score=89.84  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCCeEehhH-HHHHHHHHHHhhcchhHHH--------
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFRLIGVG-LSVWTFATAGCGSSFDFWS--------  172 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~-~~~~~~~~~~~~~a~~~~~--------  172 (487)
                      +++.+++|++....+.+--.--+...+.+++.|..+||    |||||.++.. .+...++.++.+++.++..        
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            77778899999888888888888888999999999996    8988765554 5566677777777665433        


Q ss_pred             ---------HHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhH-HHHHHHhhhhhhhhhHHHHHHhhc
Q 011369          173 ---------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVVG  230 (487)
Q Consensus       173 ---------l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l~  230 (487)
                               ++++--+.=++.-.....+.+++.|....+++.+ +++.+....++|..+|..++++..
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence                     3333344445666777889999999998777766 999999999999999999887443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.5e-07  Score=84.33  Aligned_cols=151  Identities=19%  Similarity=0.123  Sum_probs=124.1

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      |.+-.|-|+|+.+.|+..+...+.....++....+++|. .+|+..+....++.++.+.+.+.+.-..+.- -++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            889999999999999999999999999999999999975 5788888888888888888888775443333 49999999


Q ss_pred             hhhhhhhhhhhhhcCCC-CchhHHHHHHHhhhhhhhhhHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHhhcc
Q 011369          185 ASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      |..++.+...+.+..+. ++-++-.++.|....+=...||.+.|++-|.. +|+.++...+...+...+..+..-
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999888764 44556666667766666778999999998765 699999988888777776666553

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.72  E-value=1.8e-07  Score=89.45  Aligned_cols=120  Identities=14%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHh---hc-chhHHHHHHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS-SFDFWSIAICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-a~~~~~l~~~r~l~G~g  183 (487)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+..   .. ..+++.+.++-.+.+.+
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            456689999999999999999999999999999999999999888876644433222   22 23455555555566666


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhh-hhhhhhhHHHHHHh
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGV  228 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~  228 (487)
                      .+........++.|..| ++++++.++.... ..+|..+++++++.
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666667777888777 7899999987554 45677777776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=1.1e-07  Score=93.65  Aligned_cols=128  Identities=18%  Similarity=0.075  Sum_probs=99.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc-----chhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~  182 (487)
                      ..++...++...+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+     .++.+.+++.-++.|+
T Consensus       257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~  336 (473)
T PRK10429        257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI  336 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            33333334556677777777889999999999999999999998888776665554432     3567777888889999


Q ss_pred             hhhhhhhhhhhhhhhcCC-------CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          183 GEASFISLAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      +.+...+...++++|..+       +++.|..++......-+|..+++.+.|.+.+..|+
T Consensus       337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999966       34456689999999999999999999887754443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.72  E-value=1.3e-07  Score=90.47  Aligned_cols=135  Identities=10%  Similarity=-0.129  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh-cc-----hhHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011369          123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SS-----FDFWSIAICRMLVGVGEASFISLAAPFID  196 (487)
Q Consensus       123 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a-----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~  196 (487)
                      ..+..+...+..+++|+++||+|+|+++.++.+...++..... ..     .+++.+.+.-+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            3445677888899999999999999999988887766654321 11     35666666665555666666666777887


Q ss_pred             hcCCC---------------------CchhHHHHHHHhhhhhhhhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHh
Q 011369          197 DNAPV---------------------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       197 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      +++|+                     ++-|.+.|+......+|..+-|.+-+...+. -++...|+...+..+++.++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            87774                     1567888999999999888888766665544 3588889999888888887777


Q ss_pred             hcc
Q 011369          255 VIK  257 (487)
Q Consensus       255 ~~~  257 (487)
                      +..
T Consensus       452 ~~y  454 (462)
T PRK15034        452 LVY  454 (462)
T ss_pred             HHh
Confidence            665

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.70  E-value=2.1e-08  Score=88.52  Aligned_cols=329  Identities=12%  Similarity=0.013  Sum_probs=204.4

Q ss_pred             cccccCccccc-hhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          110 GDFKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       110 ~~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      .|.|++..++. -+.-.-.-.+.+.-++.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+ ..
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE  112 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE  112 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence            34466655432 22223334455566666678999999999999888888888899999999999999999999877 66


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHhhccccccCCC--
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF--  264 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~--  264 (487)
                      .+.++++-+.++++++.++.+...+..-.|..+|..++..+++..  +++..=.+.-....+..++.+++ |..++..  
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL-P~v~rSl~f  191 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL-PRVKRSLYF  191 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC-CCCchhhhh
Confidence            778999999999999999999999999999999999999888643  33444344433333333444444 3321110  


Q ss_pred             CCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHh
Q 011369          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (487)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (487)
                      ++.++ +..     ..+.+          +...+....+       .........++++....+||.++.-.+-+.+...
T Consensus       192 ~~~~~-~~~-----v~~~e----------~~~~~~~~~~-------~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~sc  248 (433)
T KOG3810|consen  192 HRLED-KIS-----VGDLE----------EMNPQASYMS-------YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASC  248 (433)
T ss_pred             hcccc-cce-----eccch----------hcCccchhhH-------HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhc
Confidence            00000 000     00000          0000000000       0002233445667777888888777777777666


Q ss_pred             hheeeeecccceeeecccccccceeee---ceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADMMFG---GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (487)
                      +++-+..|....-++.- -++.....+   ++..+.++++.+..|.+--.+.|+..   .++..+....+...++.....
T Consensus       249 g~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~  324 (433)
T KOG3810|consen  249 GYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQ  324 (433)
T ss_pred             hhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhccc
Confidence            66666555444333322 111111211   34445667777777877655555432   455555555566666666667


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHH
Q 011369          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  468 (487)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~  468 (487)
                      +.|+..+...++...+....+....-++.+...+.-|...|++ .+.
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiN-TFv  370 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGIN-TFV  370 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehH-HHH
Confidence            7787777777777777777776666677778788888888885 444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1.2e-07  Score=89.42  Aligned_cols=305  Identities=11%  Similarity=0.022  Sum_probs=180.3

Q ss_pred             chh-hhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 011369          120 GVL-SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (487)
Q Consensus       120 ~~~-~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~  198 (487)
                      |+. .++.+..+.++.++.+.+.|+.|.|+.++++...+....+..-+ +|-+.++..-.+.|+|.+..+..-..+++|.
T Consensus        52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            444 67888888999999999999999999999999999887776666 5577788999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc--------cchH-HH----------HHHHHHHHHHHHHHH--hhcc
Q 011369          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWR-YA----------FWGEAILMLPFAVLA--FVIK  257 (487)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~wr-~~----------f~~~~~~~~~~~~~~--~~~~  257 (487)
                      .++|.+.+..++.......+.++|..+-..+..+        .+-+ ..          ..+.+++..+..+..  ....
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999999999888887665433211        1111 11          111111111111100  0011


Q ss_pred             ccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHH
Q 011369          258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (487)
Q Consensus       258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (487)
                      |.....   .+ ++..                   +                    ....+..+..-++++++..+....
T Consensus       211 p~~~~~---~~-~~~~-------------------~--------------------~~~~~~l~~~~~l~~~~~ml~L~~  247 (461)
T KOG3098|consen  211 PSKDVV---NC-KSSS-------------------E--------------------TSFSELLKLTFKLLKTPKMLLLFP  247 (461)
T ss_pred             Cccchh---hh-hhhc-------------------c--------------------ccHHHHHHHHHHHhcCHhHHHHHH
Confidence            110000   00 0000                   0                    011222333445667777777666


Q ss_pred             HHHHHHhhheeeeecccceeeec--ccccccce--eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHH
Q 011369          338 GYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (487)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (487)
                      ..+..+..........|..+.-.  .+.+....  ......+++.+++....+.+.+|.++....  +.+.++..+....
T Consensus       248 ~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~  325 (461)
T KOG3098|consen  248 FFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIG  325 (461)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHH
Confidence            66665555444444445543322  22221111  222334455566666666666665443222  4444444444444


Q ss_pred             HHHHHHH------------------HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhc
Q 011369          414 CLTAFCL------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (487)
Q Consensus       414 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (487)
                      +++....                  ++.....+..++.|++-+......+..+.... ++.|..+.++. -....++
T Consensus       326 ~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~-kfyq~~~  400 (461)
T KOG3098|consen  326 FLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLF-KFYQSVA  400 (461)
T ss_pred             HHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHH-HHHHHHH
Confidence            3333221                  12345666777788888877777777777777 66777777775 3333333

>PRK09669 putative symporter YagG; Provisional

Probab=98.69  E-value=1.3e-07  Score=92.49  Aligned_cols=119  Identities=13%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh-c-chhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011369          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-S-SFDFWSIAICRMLVGVGEASFISLAAPF  194 (487)
Q Consensus       117 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~-a~~~~~l~~~r~l~G~g~g~~~~~~~~~  194 (487)
                      +..+.+.....+...++.+++++++||+|+|+.+.++.++..++.+... . .++.+.+++..++.|++.+...+...++
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566667788888999999999999999999888876665433222 2 3577788888999999999999999999


Q ss_pred             hhhcCCC-------CchhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          195 IDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       195 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      ++|..+.       ++.|...+.......+|..+|+.+++.+.+..|+
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998862       3346778899999999999999999988766555

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=3.1e-08  Score=89.43  Aligned_cols=149  Identities=12%  Similarity=0.110  Sum_probs=124.4

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC--CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      +.+.+..+..++|+..--..+.+.++..+.|.++||++  |-.....++++.++.+....+++++.++++-++..|++.+
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence            55667766778998888899999999999999999999  5444555666677777777889999999999999999998


Q ss_pred             hhhhhhhhhhhhcCCCC------chhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          186 SFISLAAPFIDDNAPVP------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      ...........+....+      --|...++...++++|..+||.++|.+.+..|++|.-.+.++..++...+..++
T Consensus       377 ~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  377 LADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777766666543      346889999999999999999999999999999999999999888877766555

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.65  E-value=1.5e-07  Score=92.92  Aligned_cols=140  Identities=11%  Similarity=0.095  Sum_probs=107.1

Q ss_pred             cchhhhHHHHHHHHHHHHH----HHhhhhcCCCeEehhHHHHHHHHHHHhhcchh---------HHHHHHHHHHhhhhhh
Q 011369          119 DGVLSSAFMVGLLVASPIF----ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD---------FWSIAICRMLVGVGEA  185 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~---------~~~l~~~r~l~G~g~g  185 (487)
                      .+++.++..+...+..++.    +++.+|++.++.+.+|.++.+++.+..+++.+         .++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666776666666666    55666666667788899999999888776655         5689999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc----------ccchHHHHHHHHHHHHHHHHHHhh
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      ...|...+++.+..|++.||+++|++.....+|..++..+.+....          ..+..+.|...++..++.+++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888888777766643221          123678888888877666655555


Q ss_pred             ccc
Q 011369          256 IKP  258 (487)
Q Consensus       256 ~~p  258 (487)
                      ..|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.64  E-value=3.1e-09  Score=102.69  Aligned_cols=153  Identities=14%  Similarity=-0.014  Sum_probs=106.4

Q ss_pred             cchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhh-cccchhhhHHHHH
Q 011369          328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSA  405 (487)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~  405 (487)
                      ..+.++......+...+.+++...++|.|+++..|++.... .+.........++.+++|+++||+ |||     +.+.+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~ili   81 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVML   81 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHH
Confidence            34556666666667777888888899999988888887666 444555677788999999999999 998     67777


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCC--chhHHHHHHHHHHHhhcCCCccceeee
Q 011369          406 ATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGV  482 (487)
Q Consensus       406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~~~g~~~~p~~~g~  482 (487)
                      +.++..+..++..... +.........+..++.+...+....++.+.+|++  .|.++.++.....+ +|+.++|.+.|+
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n-lG~~iap~l~g~  160 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN-VGSIIAPIACGY  160 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH-HHHHHHHHHHHH
Confidence            7776666654443222 1122233333344445555565667788888874  79999999855555 688899999998


Q ss_pred             eecc
Q 011369          483 LQVC  486 (487)
Q Consensus       483 l~~~  486 (487)
                      +.+.
T Consensus       161 L~~~  164 (493)
T PRK15462        161 AQEE  164 (493)
T ss_pred             HHhh
Confidence            8653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=2.1e-07  Score=89.47  Aligned_cols=130  Identities=9%  Similarity=-0.098  Sum_probs=100.7

Q ss_pred             ccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhh
Q 011369          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (487)
Q Consensus       113 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~  192 (487)
                      +.+....+...+.+..+..++.++++++.||+++|+++.++..+..+..++..+.++... ..+-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            333344455667777888999999999999999999999999988888888888777544 5777788899999999999


Q ss_pred             hhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc------chHHHHHHHHHH
Q 011369          193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL------NWRYAFWGEAIL  245 (487)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~wr~~f~~~~~~  245 (487)
                      ++..+..+++.+ .+.+...++ .+|..+.|++.|.+.|..      +.+..|++..++
T Consensus       344 sl~~~~~g~~~~-~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       344 GIALKGLGQDTK-YGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHhhhhhhhh-hhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            999999986543 333333333 399999999999999854      477888876444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.60  E-value=8.3e-09  Score=98.17  Aligned_cols=143  Identities=17%  Similarity=0.102  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHH
Q 011369          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  410 (487)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  410 (487)
                      ++..++..+........+..+.|.++++.++.+..+. .+.....++..++.++.|+++||+|||     +.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~   77 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLLL   77 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            4555666666666677777888877777789887776 566677788999999999999999999     7777777777


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceee
Q 011369          411 AISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (487)
Q Consensus       411 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g  481 (487)
                      .+..+.....+ +.+.+++..++.+++.+ .+.+...++.+..|+++|+.+.++. .....+|..+++.+.+
T Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLA-AGWGNMGGGVAQFVMP  147 (366)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHH-HHHhHHHHHHHHHHHH
Confidence            77777666666 77766666666666643 4455666778888889999999986 4444445555554443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.57  E-value=6e-06  Score=74.36  Aligned_cols=352  Identities=9%  Similarity=-0.038  Sum_probs=184.7

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh---
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK---  142 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d---  142 (487)
                      -+..+.+.+.+.+...+..+.                  +|.+-+.=|.|..+.+...-++.  -...-+.|.++.|   
T Consensus        32 ~illLl~LYllQGiP~GL~~~------------------iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y   91 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIGA------------------IPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVY   91 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhhh------------------hHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHH
Confidence            455555666776666665552                  37777777777776655433322  1234678888999   


Q ss_pred             --hcCCCeEeh-hHHHHHHHHHHHhhc-----------chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHH
Q 011369          143 --SHNPFRLIG-VGLSVWTFATAGCGS-----------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (487)
Q Consensus       143 --r~Grr~~l~-~~~~~~~~~~~~~~~-----------a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~  208 (487)
                        |+||||.-+ -+..+.+....+.+.           .++...+...-++.-+..+..-.+.-.+.-.+..+++.|-+.
T Consensus        92 ~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaS  171 (510)
T KOG3574|consen   92 SKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAS  171 (510)
T ss_pred             HHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchh
Confidence              999998643 344444444444332           345555555556666777777777777877888888887777


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhcc-------ccchH---------HHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccc
Q 011369          209 SMFYMCIPTGVALGYVYGGVVGS-------HLNWR---------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (487)
Q Consensus       209 ~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (487)
                      .....+...|..++..+--.+.+       ..+|.         ...++.+.+.++.-.+..+.-.|......++++   
T Consensus       172 T~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~---  248 (510)
T KOG3574|consen  172 TCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELE---  248 (510)
T ss_pred             HHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhh---
Confidence            66666666666665543222221       01121         223333344344334433332221100000000   


Q ss_pred             hhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeec
Q 011369          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (487)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (487)
                                                               .+..+..+.++.+++-|.....+......-.++.+-...
T Consensus       249 -----------------------------------------~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~  287 (510)
T KOG3574|consen  249 -----------------------------------------LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADAL  287 (510)
T ss_pred             -----------------------------------------cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhc
Confidence                                                     112223345566677676666666666666666666665


Q ss_pred             ccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhh---hHHHHHHHHHHHHHHHHHHHHHH-------
Q 011369          353 GPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA---FKLLSAATFLGAISCLTAFCLSS-------  422 (487)
Q Consensus       353 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------  422 (487)
                      .+.-+.+ .|.+......   ..+..++..++.++...|+-...++.   .+-+..=.........+.+..++       
T Consensus       288 t~LkLle-~Gv~ke~Lal---~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~  363 (510)
T KOG3574|consen  288 TSLKLLE-HGVPKEELAL---IAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGT  363 (510)
T ss_pred             cchHHHH-cCCChhHhee---eeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCc
Confidence            5665655 5666544422   22455556666666666654321110   00111111111111122222111       


Q ss_pred             -----HHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          423 -----LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       423 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                           ....+....+.+.+....+...++..++..+|...|+-+.+.|...+. |+-.-..+++++.|.
T Consensus       364 ~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~  431 (510)
T KOG3574|consen  364 FPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL-GGNWPGTVALWLADG  431 (510)
T ss_pred             eeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh-cCCcHHHHHHHhccc
Confidence                 112222234445555555555677788889999999999998555455 554444444555553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.56  E-value=5.3e-07  Score=88.56  Aligned_cols=139  Identities=17%  Similarity=0.179  Sum_probs=109.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhcCCCeE-------ehhHHHHHHHHHHHh-----hc-----chhHHHHHHHHHHhhh
Q 011369          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRL-------IGVGLSVWTFATAGC-----GS-----SFDFWSIAICRMLVGV  182 (487)
Q Consensus       120 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~-----~~-----a~~~~~l~~~r~l~G~  182 (487)
                      +++.+...+...+..++.+++.||+|+|+.       +.+|.++.+++.+..     .+     ..++++++..-++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            556666777888899999999999999985       777777776665422     11     1357888899999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc----------ccchHHHHHHHHHHHHHHHHH
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAVL  252 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~~~  252 (487)
                      |.+...+....++.+..|++.++.++|++....++|..+|..++.....          .-...+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988865531          112567788777777776666


Q ss_pred             Hhhccc
Q 011369          253 AFVIKP  258 (487)
Q Consensus       253 ~~~~~p  258 (487)
                      .++..|
T Consensus       472 ~~~~~~  477 (489)
T PRK10207        472 MALMVP  477 (489)
T ss_pred             HHHHHH
Confidence            665544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.54  E-value=3.1e-09  Score=104.14  Aligned_cols=153  Identities=12%  Similarity=0.041  Sum_probs=106.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh--c--ch------hHHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--S--SF------DFWSIAI  175 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a~------~~~~l~~  175 (487)
                      +.+.++.+.+..  -+......+...++.+....+.||+|||++++.+..+.+++.+..+  .  .+      +...+..
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            666777777666  2222233344556666777999999999999999999888877765  1  11      1222222


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      .....-.......+....+..|.+|.+.|.+..++......++..+++.+...+.+..+-...+++.+++.++..+..++
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            22221122223456677889999999999999999999999999988888777776655345667777777777777788


Q ss_pred             ccccc
Q 011369          256 IKPLQ  260 (487)
Q Consensus       256 ~~p~~  260 (487)
                      +.||+
T Consensus       435 ~lpET  439 (451)
T PF00083_consen  435 FLPET  439 (451)
T ss_pred             EEeeC
Confidence            88884

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.53  E-value=1.4e-06  Score=83.85  Aligned_cols=128  Identities=10%  Similarity=0.032  Sum_probs=97.5

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHH-HHHHHHHHhhc--chhHHHHHHHHHHhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS-VWTFATAGCGS--SFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~--a~~~~~l~~~r~l~G~g~  184 (487)
                      +.+.+|.++.+.+++.....++..++.++.+++.||++++........ +..+.......  ..+.+.+.+..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            444588899999999999999999999999999999984332222222 22222222222  346677888899999999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchH
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR  236 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr  236 (487)
                      +...+....+..|.+| ++++.+.++.+....+|..+++.+++.+.....+.
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            9999999999999987 58899999999999999999999999887654443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.52  E-value=8.6e-07  Score=71.28  Aligned_cols=115  Identities=9%  Similarity=0.096  Sum_probs=96.8

Q ss_pred             cCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       114 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      +++..--.-.++.+....+..++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..+++...
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            344343444567777888899999999999999999999999988655443 5678899999999999999999999999


Q ss_pred             hhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhh
Q 011369          194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (487)
Q Consensus       194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  229 (487)
                      ++.+..++++|++..+++......+.++|.++...+
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988888888776544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.49  E-value=2.4e-06  Score=78.60  Aligned_cols=148  Identities=20%  Similarity=0.183  Sum_probs=124.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhh-hcCCCeEehhHHHHHHHHHHH---hhcchhHHHHHHHHHHhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-SHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVG  181 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~---~~~a~~~~~l~~~r~l~G  181 (487)
                      |.=.+-||++..+...++.....|..++....|++.. |.++|+...+++....++..+   .+...+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            5555668999999999999999999999999999988 677788777888877766655   345568899999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc----------ccchHHHHHHHHHHHHHHHH
Q 011369          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       182 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~~  251 (487)
                      ++.|.+.....+.+.+...+++.|..+|.+.....++..++..+++.+.|          ..+|-.+|.+.++..++..+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987653          23577888888776555544


Q ss_pred             HH
Q 011369          252 LA  253 (487)
Q Consensus       252 ~~  253 (487)
                      +.
T Consensus       393 ll  394 (403)
T PF03209_consen  393 LL  394 (403)
T ss_pred             HH
Confidence            43

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.43  E-value=7e-07  Score=86.09  Aligned_cols=150  Identities=9%  Similarity=0.059  Sum_probs=102.0

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCC---------eEehhHHHHHHHHHHHhhcchhHHH-HHHH
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF---------RLIGVGLSVWTFATAGCGSSFDFWS-IAIC  176 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a~~~~~-l~~~  176 (487)
                      .+.+-+|.+-.+.|++.++..+...+..+++|.++||.-+|         ..-.++....+++.+..++.++-.. +.+.
T Consensus       284 Y~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~  363 (466)
T KOG2532|consen  284 YLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI  363 (466)
T ss_pred             HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence            35667899999999999999999999999999999998553         2233444455555555666553111 1111


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc---ccchHHHHHHHHHHHHHHHHHH
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      -+..+.+..+....+...-.....+++-+..+|+.+....+..+++|.+.+.+.+   ...||++|++.+++.++..++.
T Consensus       364 ~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  364 LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            1112222222222222222222145789999999999999999999999999984   2479999999999877766554


Q ss_pred             hhc
Q 011369          254 FVI  256 (487)
Q Consensus       254 ~~~  256 (487)
                      .++
T Consensus       444 ~~f  446 (466)
T KOG2532|consen  444 LFF  446 (466)
T ss_pred             eEe
Confidence            444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.42  E-value=1e-07  Score=76.66  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=85.5

Q ss_pred             ceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q 011369          372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (487)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (487)
                      ....++..++.+..+++.||++||     +.+........+..+.....++.+......++.+++.+...+....+..+.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            455677888999999999999998     666666666666655555556666677777788888777777778888899


Q ss_pred             cCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      .|+++|+++.++. .....+|..++|.+.|++.+.
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~  113 (141)
T TIGR00880        80 YPPEERGVALGLM-SAGIALGPLLGPPLGGVLAQF  113 (141)
T ss_pred             CChhhhhHHHHHH-HHhHHHHHHHhHHhHHHHhcc
Confidence            9999999999997 667777888999998887653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.38  E-value=4.8e-06  Score=78.89  Aligned_cols=125  Identities=17%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA  185 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g  185 (487)
                      ..--+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+.+  +.+.+++..++.++|.+
T Consensus       263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~  342 (467)
T COG2211         263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG  342 (467)
T ss_pred             EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence            3334566666677778888888888899999999999999999999999999999888776  78899999999999999


Q ss_pred             hhhhhhhhhhhhcCCC-------CchhHHHHHHHhhhhhhhhhHHHHHHhhccc
Q 011369          186 SFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH  232 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  232 (487)
                      ...+...++++|..+.       ++-|...+......=+|..++..+.++..+.
T Consensus       343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988753       3346777777777778888888777666543

>PRK11462 putative transporter; Provisional

Probab=98.34  E-value=3.5e-06  Score=82.42  Aligned_cols=120  Identities=10%  Similarity=0.022  Sum_probs=83.3

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhhhhhhhhhhhh
Q 011369          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAP  193 (487)
Q Consensus       116 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~g~g~~~~~~~~  193 (487)
                      +...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677788888999999999999999999887655554444333333322  2334455556778888777777777


Q ss_pred             hhhhcCC-------CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccch
Q 011369          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (487)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  235 (487)
                      +++|..+       +++.|..++......-+|..+++.+++.+.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8887766       33446666777788888888888888877654333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.31  E-value=6.2e-06  Score=81.07  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=88.8

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhhhhcCCC-eEehhHHHHHHHHHHHhhc--chhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011369          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPF-RLIGVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAPF  194 (487)
Q Consensus       118 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~g~g~~~~~~~~~  194 (487)
                      ..++....+.++..+++.+.|.+..+++|- +.++++.++..++..+++.  .+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            578888899999999999999999988864 4556776666654433333  3466667788899999999998888888


Q ss_pred             hhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH
Q 011369          195 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (487)
Q Consensus       195 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  227 (487)
                      +.-..|+++-+.+.++..+.-.+|+.+|..+..
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888899999999999999999998888877653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.29  E-value=2.9e-06  Score=77.41  Aligned_cols=142  Identities=15%  Similarity=0.117  Sum_probs=116.3

Q ss_pred             Cccccc-cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhh
Q 011369          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~  184 (487)
                      +.+..| .|.++.+.+...+.+..+..+|.+++.++..|+...|.+.+..++..+-++..+++++...+ .+-++.|+..
T Consensus       260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~  338 (422)
T COG0738         260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFN  338 (422)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHh
Confidence            334444 78899999999999999999999999999999999999999999988888999999985544 4557789999


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~  250 (487)
                      +..+|...+...+..|  +.....|..-....+|..+-|.+-|++.+..|-...+.+...++.+..
T Consensus       339 simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         339 SIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998  333445555666778999999999999999998888775544444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.28  E-value=9.7e-06  Score=78.37  Aligned_cols=141  Identities=15%  Similarity=0.028  Sum_probs=114.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhcCC-CeEehhHHHHHHHHHHHhhcchh---------------------HHHHHHHH
Q 011369          120 GVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFD---------------------FWSIAICR  177 (487)
Q Consensus       120 ~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~a~~---------------------~~~l~~~r  177 (487)
                      .|....+.+...+.+++.-++.+|+|+ |++..++.++.+++.+...+.++                     .+..++.-
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            344455666666778888899999995 66668898888888777765443                     37788888


Q ss_pred             HHhhhhhhhhhhhhhhhhhhcCCC--CchhHHHHHHHhhhhhhhhhHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHH
Q 011369          178 MLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       178 ~l~G~g~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~  253 (487)
                      .+.|+..+..+..-++++++..++  ++.|..+|+++.+..+.+++..+..|.+.+.+|  -.+.+.+.++..++.++..
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999995  456999999999999999999987777554433  5678899999999999999


Q ss_pred             hhccccc
Q 011369          254 FVIKPLQ  260 (487)
Q Consensus       254 ~~~~p~~  260 (487)
                      ++.+|+.
T Consensus       468 ~~~~~~~  474 (477)
T TIGR01301       468 LILLPRP  474 (477)
T ss_pred             HHhCCCC
Confidence            9998874

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.22  E-value=1.5e-05  Score=79.29  Aligned_cols=154  Identities=11%  Similarity=-0.037  Sum_probs=103.9

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhH-------------HH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-------------WS  172 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-------------~~  172 (487)
                      +.+-+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....             ..
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            5666666766444 555566667777788888999999999999999999999999887754221             12


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHH-
Q 011369          173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV-  251 (487)
Q Consensus       173 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~-  251 (487)
                      +...-+..........+....+.+|.+|.+-|+++.++......+...+-...-..+....++...|...+..+.+..+ 
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            2222223333333355666778999999999999999887766655544333333333333346677777777666666 


Q ss_pred             HHhhccccc
Q 011369          252 LAFVIKPLQ  260 (487)
Q Consensus       252 ~~~~~~p~~  260 (487)
                      ..++..||+
T Consensus       478 fv~~~~pET  486 (513)
T KOG0254|consen  478 FVFFFVPET  486 (513)
T ss_pred             HheEEcccC
Confidence            677777874

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.21  E-value=3.3e-07  Score=86.41  Aligned_cols=123  Identities=12%  Similarity=-0.014  Sum_probs=104.3

Q ss_pred             ccceeeecccccccc-e-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          353 GPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  430 (487)
Q Consensus       353 ~p~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (487)
                      ...++.+.+|++..+ . .+......+..+..+.+|++.||+|.|     +++..+.+.-.+..++.....+...+.+.-
T Consensus        48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333555578888777 5 566677788999999999999999999     888888888888888888888888899999


Q ss_pred             HHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeee
Q 011369          431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  482 (487)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~  482 (487)
                      ++.|++.+..+ ....++.+.+|+++|+++.|+. .....+|.++++++.++
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~-~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS-RAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999888 8899999999999999999997 66777788888888776

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.13  E-value=3.4e-05  Score=74.52  Aligned_cols=142  Identities=15%  Similarity=-0.010  Sum_probs=94.3

Q ss_pred             Ccc-ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh-----cchhHHHHHHHHHH
Q 011369          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-----SSFDFWSIAICRML  179 (487)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~a~~~~~l~~~r~l  179 (487)
                      |.+ ++.+|.++.+.++.......+..++..+.+++.++.++++.+.....+..++.++..     ..++++.+++..++
T Consensus       242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l  321 (413)
T PRK15403        242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSL  321 (413)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            544 455689999999998888888888888888877555444443322222223322222     23344456788888


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHH
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~  249 (487)
                      .|+|.+...|......-+ -....+|++.++.+.....+..+++..++++.++ +=++.|...+++..+.
T Consensus       322 ~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        322 YAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence            999999888877753321 1223579999999888888888888888888765 4466666665554443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.09  E-value=0.00073  Score=63.92  Aligned_cols=152  Identities=8%  Similarity=0.026  Sum_probs=82.9

Q ss_pred             hhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccc
Q 011369          317 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (487)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  396 (487)
                      ++..+.+.+++|-|.+..+++.....-.++.+...-...=+.+ .|++.....   +..+..+...++.++++.|+-+.+
T Consensus       265 ~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LA---l~~li~~P~qii~~~~~~Kws~g~  340 (544)
T PF13000_consen  265 KDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLA---LLVLIDFPFQIILPYYIGKWSAGS  340 (544)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhH---HHHHHhhhHHHHHHHHhhhhhcCC
Confidence            3444556667788887777777777666665554444444444 466655542   223455566777777777764433


Q ss_pred             hhh--------------------------hHHHHHHHHHHHHHHHHH----HHHH--------HHHHHHHHHHHHHHHHh
Q 011369          397 SNA--------------------------FKLLSAATFLGAISCLTA----FCLS--------SLYGFLALFTVGELLVF  438 (487)
Q Consensus       397 ~~~--------------------------~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~~  438 (487)
                      ++.                          .+..+.+...-.+..++.    ...+        -...+++...+..+...
T Consensus       341 ~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~st  420 (544)
T PF13000_consen  341 PPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMST  420 (544)
T ss_pred             CccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            210                          011111111111111111    1111        11223333445555555


Q ss_pred             ccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhc
Q 011369          439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (487)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (487)
                      ..+....+.-++..+|..-|+.+.+.|+..|..|
T Consensus       421 vmFVai~AFharISDP~IGGTYMTLLNTvSNLGG  454 (544)
T PF13000_consen  421 VMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGG  454 (544)
T ss_pred             HHHHHHHHHHhhccCcccchHHHHHHHHHHhcCC
Confidence            6667778888888999999999999866656544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.06  E-value=3.7e-06  Score=78.06  Aligned_cols=121  Identities=11%  Similarity=0.111  Sum_probs=97.5

Q ss_pred             cccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011369          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  438 (487)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (487)
                      .++.++... .+.....+...+++++.|++.||++|+     .++..+..+-.+..+........|.++++=.+.|++.+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeA  136 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEA  136 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            356665555 566677788899999999999999999     66777766666666666666888888899999999999


Q ss_pred             ccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ...+..+.++.+.+|.+.|++.+++.+ ...-.|.++|-+.++.+.++
T Consensus       137 s~~~ia~s~IaD~f~~~~Rs~~~~ify-~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  137 SYSPIAPSLIADSFPDDKRSRVLGIFY-FAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             hhcccchhHhhhcCcchhhhHHHHHhh-hhcccccceeEEeeeeeccC
Confidence            999999999999999999999999984 45555777777776666554

>PTZ00207 hypothetical protein; Provisional

Probab=98.05  E-value=2e-05  Score=77.98  Aligned_cols=150  Identities=5%  Similarity=-0.127  Sum_probs=109.3

Q ss_pred             Ccccccc-ccCc-cccch-hhhHHHHHHHHHHHHHHHhhhhcCCC--------eE-ehhHHHHHHHHHHHhhcchhHHHH
Q 011369          106 SGIQGDF-KLNN-FQDGV-LSSAFMVGLLVASPIFASLAKSHNPF--------RL-IGVGLSVWTFATAGCGSSFDFWSI  173 (487)
Q Consensus       106 ~~i~~~~-~~s~-~~~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr--------~~-l~~~~~~~~~~~~~~~~a~~~~~l  173 (487)
                      .+|.+.+ |.+. .+.+. +.+++.++..+|-+..|.+....-+|        ++ +.+..+ ..++.++.+++-.-..+
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence            6677888 6523 32233 78999999999999999887222222        22 222223 45555555555433689


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhH-HHHHHhhcccc----------c---hHHHH
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG-YVYGGVVGSHL----------N---WRYAF  239 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g-~~~~~~l~~~~----------~---wr~~f  239 (487)
                      ++.-++.|++.|..++.....++|.|. |+-|+-..+...+..+|..+- ..+.|.++++.          |   .|.+|
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            999999999999999999999999999 899999999999999998775 55667666431          2   78899


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 011369          240 WGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~  257 (487)
                      ++.+.+++...+....+.
T Consensus       535 ~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHhhee
Confidence            999988888777665554

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.04  E-value=4e-05  Score=75.77  Aligned_cols=151  Identities=14%  Similarity=0.095  Sum_probs=119.0

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcchh---------------
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD---------------  169 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~---------------  169 (487)
                      ..+.++++.+.....-..+.+.-...+..+.++.++|-| ||-+++.++.++..++.++..++..               
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            456777888877777778888888888999999999986 8999999999998888655433211               


Q ss_pred             ----------HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCC---C-C--chhHHHHHHHhhhhhhhhhHHHHHHhhcccc
Q 011369          170 ----------FWSIAICRMLVGVGEASFISLAAPFIDDNAP---V-P--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL  233 (487)
Q Consensus       170 ----------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~---~-~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~  233 (487)
                                ...++.+.-+..+|.|+.-+...+.-+|-++   + +  ++...+.++....++|..++..+-.+.-+..
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                      2356777788888999999999999999998   2 2  2337788889999999999888888887889


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhc
Q 011369          234 NWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       234 ~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      +|.+-|.+..+..++..++.+..
T Consensus       222 ~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             cceeeccHHHHHHHHHHHHHHcC
Confidence            99999999988766655544433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.03  E-value=1.6e-06  Score=87.83  Aligned_cols=124  Identities=10%  Similarity=-0.006  Sum_probs=95.3

Q ss_pred             eeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH-------------
Q 011369          356 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-------------  421 (487)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  421 (487)
                      -+++.++++..+. .+.+...++..++.++.+++.||.+||     +++.++.++.+++.++....+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            3455688887666 666777899999999999999999998     667666666666665554331             


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHH
Q 011369          422 --------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  463 (487)
Q Consensus       422 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~  463 (487)
                                                            ....+++.-++.|++.+..++....++.+.+|++.|+...|+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  122345667778888888888889999999999999999999


Q ss_pred             HHHHHHhhcCCCccceeeeeec
Q 011369          464 STVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       464 ~~~~~~~~g~~~~p~~~g~l~~  485 (487)
                      . .....+|.++|+.++|++.+
T Consensus       213 ~-~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       213 L-ESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             H-HHHHHhhhHHHHHHHHHHHh
Confidence            6 67778888899988887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.91  E-value=4.6e-06  Score=77.24  Aligned_cols=127  Identities=11%  Similarity=-0.016  Sum_probs=96.8

Q ss_pred             HHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchh-H---HHHHHHHHHhhh-hhhhhhhhhhhhhhhcCCCCchhHH
Q 011369          133 ASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-F---WSIAICRMLVGV-GEASFISLAAPFIDDNAPVPQKTAW  207 (487)
Q Consensus       133 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-~---~~l~~~r~l~G~-g~g~~~~~~~~~i~~~~~~~~r~~~  207 (487)
                      +-.+...+.|++|||++.+.|.+++++..+..+...| .   ..+++.-.+..+ +.-+-......+-+|.+|.+-|+..
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~  443 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC  443 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence            5556677899999999999999999999999988876 1   112222222222 2222344566777999999999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHhhccccc
Q 011369          208 LSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (487)
Q Consensus       208 ~~~~~~~~~~G~~~g~~~~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (487)
                      -|+.....-.|+++|...-..+.+     ..+.|++|++.+.+.++..+..+++ ||+
T Consensus       444 hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEt  500 (538)
T KOG0252|consen  444 HGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PET  500 (538)
T ss_pred             hhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecc
Confidence            999999999999999988888887     6789999999999877666555544 564

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.88  E-value=0.00013  Score=70.25  Aligned_cols=123  Identities=11%  Similarity=0.039  Sum_probs=110.4

Q ss_pred             ccccccccCccccchhhhHHHHHHHHHHHHHH-HhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA-SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      .+...++.++.+.+...+...+...+++++.. .+...+|-|+++..|++.-.+...+.+++++.|+++....+.++.. 
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-
Confidence            47778999999999999888888888888888 7777889999999999999999999999999999999999887754 


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  230 (487)
                      ...|...+.++.+..++++|+++++.+..-++..+++|.+-+.+.
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            488999999999999999999999999999999999998876654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.87  E-value=4.9e-05  Score=68.90  Aligned_cols=124  Identities=16%  Similarity=0.119  Sum_probs=113.0

Q ss_pred             ccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC--CCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhh
Q 011369          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (487)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~  186 (487)
                      .+.||.++.|.|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+.++....++++-.+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999987  77777888888777788888899999999999999999999


Q ss_pred             hhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc
Q 011369          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH  232 (487)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  232 (487)
                      ..+....++....|.++||.++|+..+..+++-.+||+++|.+..+
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            9999999999999999999999999999999999999999887753

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.82  E-value=0.0007  Score=65.65  Aligned_cols=244  Identities=14%  Similarity=0.092  Sum_probs=134.2

Q ss_pred             CccccchhhhHHHH-HHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc---------h----------------
Q 011369          115 NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------F----------------  168 (487)
Q Consensus       115 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~----------------  168 (487)
                      .++.+.++=....+ ...+......+++++++|.+++-+.+..+.....++++.         +                
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34455555554444 445668889999999999998877776666655555542         1                


Q ss_pred             ------hHHHHHHHHHHhhhhhhhhhh-hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc---------c
Q 011369          169 ------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------H  232 (487)
Q Consensus       169 ------~~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~  232 (487)
                            +.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+         .
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~  215 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV  215 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                  122222233333333333333 457788999999999999999999999999999888877776         2


Q ss_pred             cchHHHHHHHHHHHHHHHH---HHhhccccccCCCCCC-CcccchhhcccccCcccCCCcccccccchhhhhhhhhcccc
Q 011369          233 LNWRYAFWGEAILMLPFAV---LAFVIKPLQLKGFAPA-ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  308 (487)
Q Consensus       233 ~~wr~~f~~~~~~~~~~~~---~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (487)
                      ..|...+.......++..+   .......+.....+.. ++.++..                                  
T Consensus       216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~k----------------------------------  261 (491)
T PF03219_consen  216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKK----------------------------------  261 (491)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhccc----------------------------------
Confidence            2465443322211111111   1122222111000000 0000000                                  


Q ss_pred             ccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-e---eeceeecccchhhhh
Q 011369          309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M---FGGVTIVCGIVGTIS  384 (487)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~  384 (487)
                         ..+...+..+.++.++++|.+..+++....++.....+....-...++.+..+..-. .   +....++..++..++
T Consensus       262 ---k~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l  338 (491)
T PF03219_consen  262 ---KKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFL  338 (491)
T ss_pred             ---ccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence               001222344677888899999988888777776655444333333333332221111 1   112334444555577


Q ss_pred             hhhhHhhhccc
Q 011369          385 GGFILDQMGAT  395 (487)
Q Consensus       385 ~g~l~d~~~~~  395 (487)
                      ++.+.+|+|-+
T Consensus       339 ~~~iir~~GW~  349 (491)
T PF03219_consen  339 SSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHhhHH
Confidence            78888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.75  E-value=0.00033  Score=67.40  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccc
Q 011369          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      .+.+..++.+++.++..|-.....+.+..+.+++++|..+..+. ...-.+|-.+|..
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~-~~~l~~Gl~~Gs~  426 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALM-VIFLLVGLALGAV  426 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            35566677788888887766666777788888888887777775 4444445444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.74  E-value=8.5e-05  Score=70.69  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=86.9

Q ss_pred             eEehhHHHHHHHHHHHhhcc---hh------HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCC---chhHHHHHHHhhh
Q 011369          148 RLIGVGLSVWTFATAGCGSS---FD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI  215 (487)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~a---~~------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  215 (487)
                      |+++++.+++.+|.++..++   .+      .+.++++-.+.++|.|+.-|...++++|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            34567888888888874433   22      367899999999999999999999999999875   4778888999999


Q ss_pred             hhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhh
Q 011369          216 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       216 ~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      ++|..++..+.+++-+++||.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998876665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.67  E-value=0.0001  Score=68.79  Aligned_cols=114  Identities=12%  Similarity=0.062  Sum_probs=82.8

Q ss_pred             cccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHH--HHHHH---HHHhhcchhHHHHHHHHHHhhhhhhh
Q 011369          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS--VWTFA---TAGCGSSFDFWSIAICRMLVGVGEAS  186 (487)
Q Consensus       112 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~--~~~~~---~~~~~~a~~~~~l~~~r~l~G~g~g~  186 (487)
                      +.-..++..+....|.+|..++.--...+  |+  |++.+.+.+  +..+.   ..+.-+.++.|.+++.-+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            33345677788888888776654432221  33  333333322  22222   22333568999999999999999999


Q ss_pred             hhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhh
Q 011369          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (487)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  229 (487)
                      .++.....+.|-.++++|-.+++....+-++|.+++.+++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.00013  Score=70.94  Aligned_cols=139  Identities=14%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             Cccccc-cccCccccchhhhHHHHHHHHHHHHHHHhhhh----cCCCeEehhHHHHHHHHH-HHhhcchhHHHHHHHHHH
Q 011369          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRML  179 (487)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~a~~~~~l~~~r~l  179 (487)
                      |.+.++ .|.|..+.+.+.+.+.++.+++.+..|.++||    ..+|......+.++.+.. +......+......+-+.
T Consensus       297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~  376 (495)
T KOG2533|consen  297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLI  376 (495)
T ss_pred             HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHh
Confidence            555555 56899999999999999999999999999999    677777666665554444 444444445555555555


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCch-hHHHHHHHhhhhhhhh-hHHHHHHhhccccchHHHHHHHHH
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQK-TAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAI  244 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~wr~~f~~~~~  244 (487)
                      .+.+.....+......++...++.| -...+....+.+.+.. .+++.-+...+.++|-+.|.....
T Consensus       377 ~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  377 GPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             cchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            5555666677777888887765443 3344444444444443 344444555666889988844433

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.65  E-value=3e-05  Score=54.16  Aligned_cols=52  Identities=21%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHH
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW  157 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  157 (487)
                      |...++.|+++.++|.+.++..+...++.+++|.++||+++++.++....+.
T Consensus        24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            6667789999999999999999999999999999999999998877665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.63  E-value=0.00039  Score=69.56  Aligned_cols=138  Identities=12%  Similarity=-0.064  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHH---HHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q 011369          125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS---IAICRMLVGVGEASFISLAAPFIDDNAPV  201 (487)
Q Consensus       125 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~---l~~~r~l~G~g~g~~~~~~~~~i~~~~~~  201 (487)
                      .............+.+.|++|||.....+.++..++.++.++..+...   ..+...+..++.+..+.....+..|.+|.
T Consensus       358 ~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt  437 (521)
T KOG0255|consen  358 LSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT  437 (521)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            333344555555688999999999999999999999999998875443   56666666666776777779999999999


Q ss_pred             CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCC
Q 011369          202 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (487)
Q Consensus       202 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (487)
                      ..|..+.+.......+|.+++|.+...... ......+.+.+....+.+.+..++.||+...
T Consensus       438 ~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  438 VVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            999999999999999999999988765544 2222222334556666666666777885443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.27  E-value=0.00081  Score=59.17  Aligned_cols=135  Identities=10%  Similarity=-0.093  Sum_probs=89.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Q 011369          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (487)
Q Consensus       120 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~  199 (487)
                      |.+.-+-.+...+..+....+.||+---.=..+..++.+.+.++-+++++.++=+++-.+..++.|.-...-..+-+.+ 
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y-  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY-  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence            3444444455556666666778886443334566777888889999999999999998888888886655544444433 


Q ss_pred             CCCchhHHHHHHHhhhhhhhhhHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      ++    ...+.+..+.+.++++|..--..+.+.  ..-|...+++..+.++.+...++.+++
T Consensus       144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            32    235556666666666666544445542  456888888888777777777777654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.25  E-value=0.013  Score=55.65  Aligned_cols=126  Identities=10%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             CccccccccC---ccccchhhhHHHH-HHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc---------hh---
Q 011369          106 SGIQGDFKLN---NFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------FD---  169 (487)
Q Consensus       106 ~~i~~~~~~s---~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~~---  169 (487)
                      ..+++.+.++   +..+.++=+...+ +..+..++.+++.+++.|.+++-+-+..+....+++++.         ++   
T Consensus        47 R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~  126 (509)
T COG3202          47 RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF  126 (509)
T ss_pred             HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence            4466666554   5566777777777 677899999999999999999888877777777777652         11   


Q ss_pred             --------------------HHHHHHHHHHhhhhhhhhhh-hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh
Q 011369          170 --------------------FWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (487)
Q Consensus       170 --------------------~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  228 (487)
                                          .|...+.-++.=+=.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..+
T Consensus       127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                12222222222222222222 345667888888999999999999999999999888888


Q ss_pred             hcc
Q 011369          229 VGS  231 (487)
Q Consensus       229 l~~  231 (487)
                      +.+
T Consensus       207 ~~k  209 (509)
T COG3202         207 LSK  209 (509)
T ss_pred             Hhh
Confidence            876

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.13  E-value=0.0035  Score=59.58  Aligned_cols=142  Identities=16%  Similarity=0.221  Sum_probs=107.9

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhhhhcCCC---eE----ehhHHHHHHHHHHHhhcc----------hhHHHHHHHHHHh
Q 011369          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPF---RL----IGVGLSVWTFATAGCGSS----------FDFWSIAICRMLV  180 (487)
Q Consensus       118 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr---~~----l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r~l~  180 (487)
                      ..+|..+...+...+.+++..++-.+.++|   +.    +-+|+.+.+.+.++....          .+.++++..-+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            447778888888888888888888885544   21    345555555555544332          3689999999999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh------hccccchHHHHHHHHHHHHHHHHHHh
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      ++|.=+..|++.+++....|+.-.+.+++.+......|..++..+++.      ..+...-...|+..+...++..+...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999889999999998888888888777763      23344566778888888777777666


Q ss_pred             hcccc
Q 011369          255 VIKPL  259 (487)
Q Consensus       255 ~~~p~  259 (487)
                      ...|+
T Consensus       485 ~~~~~  489 (498)
T COG3104         485 LLSPK  489 (498)
T ss_pred             HhhHH
Confidence            65554

>PRK03612 spermidine synthase; Provisional

Probab=97.09  E-value=0.006  Score=60.30  Aligned_cols=136  Identities=10%  Similarity=-0.072  Sum_probs=81.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHH--HH-HHHHHh----hcchhH-HHHHHHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV--WT-FATAGC----GSSFDF-WSIAICRML  179 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~--~~-~~~~~~----~~a~~~-~~l~~~r~l  179 (487)
                      +.--+|.+..+.+.+.+++.+|.++|+..++++.++.-++ ...+-+.+  .+ +...+.    ++...+ ..++..-++
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444677888889999999999999999999887432222 21111111  11 111111    111111 223444556


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc-cccchHHHHHHHHHH
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAIL  245 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~wr~~f~~~~~~  245 (487)
                      .|+..|+..|....+..+... ++-+...|-.+....+|.++|.++.+++. +..|-....++.+.+
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            788888888877776665432 24567788889999999999999887654 455543333333333

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.05  E-value=0.014  Score=54.41  Aligned_cols=58  Identities=19%  Similarity=0.026  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccc
Q 011369          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      ..+.++.+....+.++..|-.....+.+.++.++++++..+-.+. ...-..|-..|..
T Consensus       340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m-~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLM-VFFLVGGLALGSL  397 (406)
T ss_pred             ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHH-HHHHHHHHHHhhH
Confidence            456677788888888888777777788888998887776666664 4444445444433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.68  E-value=0.018  Score=49.97  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=34.7

Q ss_pred             CchhHHHHHHHhhhhhhhhhHHHHHHhh---c--cccchHHHHHHHHHHHHHHHHHHhhc
Q 011369          202 PQKTAWLSMFYMCIPTGVALGYVYGGVV---G--SHLNWRYAFWGEAILMLPFAVLAFVI  256 (487)
Q Consensus       202 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~--~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (487)
                      |+|+....+-..+.++|.++.-..--.-   .  -.-.|++++.+.+++.++.+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666666666777788877654331111   0  11359999999998877666655555

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.68  E-value=0.0043  Score=60.13  Aligned_cols=145  Identities=13%  Similarity=0.020  Sum_probs=105.6

Q ss_pred             cCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhc----------chhHHHHHHHHHHhhhh
Q 011369          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRMLVGVG  183 (487)
Q Consensus       114 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------a~~~~~l~~~r~l~G~g  183 (487)
                      .++...|.+..+..++..++.....+..-+..-|+++....++.++..+.-..          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888888888888888889888888877888888888888777666554221          12233344455667777


Q ss_pred             hhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc--------hHHHHHHHHHHHHHHHHHHhh
Q 011369          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAILMLPFAVLAFV  255 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--------wr~~f~~~~~~~~~~~~~~~~  255 (487)
                      ....+-....+++|..|+..-|...+++.+..++|..++..++..+.+.++        -.+..++..+..++..++..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            777777888999999999999999999999999999999999988876544        224455555555444444444


Q ss_pred             ccc
Q 011369          256 IKP  258 (487)
Q Consensus       256 ~~p  258 (487)
                      ++|
T Consensus       412 Lp~  414 (433)
T PF03092_consen  412 LPP  414 (433)
T ss_pred             cCC
Confidence            433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.59  E-value=0.00098  Score=46.54  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             HHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccc
Q 011369          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (487)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~  396 (487)
                      -..+++...+...+..|+|.|+++ .|.+..+. .+.++..+..+++.++.|+++||.++++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            345566667777788899999997 67887777 6667777889999999999999999983

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.29  E-value=0.13  Score=49.88  Aligned_cols=61  Identities=16%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh
Q 011369          168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (487)
Q Consensus       168 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  228 (487)
                      ++-+..++..++.|+..|-....+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778889999999999999999999999999999999999999999999888877543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.20  E-value=0.0012  Score=57.95  Aligned_cols=120  Identities=13%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             hheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH--
Q 011369          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--  421 (487)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  421 (487)
                      ..+.+..|.| .+++..+++..+. .+.....++..+| +..|.+.|+++.+     ..+.++.+....+....+..-  
T Consensus        17 t~Y~Fs~yS~-~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSP-QLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhH-HHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            3445555555 4556688887776 5555556777665 7889999999998     777777777777776665431  


Q ss_pred             -----HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhc
Q 011369          422 -----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (487)
Q Consensus       422 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (487)
                           +.|......++.+.+.+...........+.+ |++||++.|+.....+.-+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSa  144 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSA  144 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHH
Confidence                 2333333334443333333233333344566 4689999999744444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.15  Score=48.97  Aligned_cols=105  Identities=14%  Similarity=0.213  Sum_probs=78.8

Q ss_pred             hhhHHHHHHHH----HHHHHHHhh---hhcCCCeEehhHHHHHHHHHHHhhcc------------------hhHHHHHHH
Q 011369          122 LSSAFMVGLLV----ASPIFASLA---KSHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAIC  176 (487)
Q Consensus       122 ~~s~~~~~~~i----~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~a------------------~~~~~l~~~  176 (487)
                      +..++.++..+    ++.+.+.+.   +++||++.+.++..+..++.++.-..                  +++...++.
T Consensus       280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii  359 (461)
T KOG3098|consen  280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII  359 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence            34444444444    444555555   45899999999999888887775442                  256677888


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  227 (487)
                      -+++|++.+......+.++.+.+ +++|..+.++.-.-..++..++-....
T Consensus       360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            89999999999999999999999 478999999988888887776555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.10  E-value=0.01  Score=55.73  Aligned_cols=150  Identities=10%  Similarity=-0.060  Sum_probs=95.6

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhhcC-CCeEehhHHHHHHHHHHHhh-c---chhHHHHHHHHHHhhhhh
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCG-S---SFDFWSIAICRMLVGVGE  184 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~-~---a~~~~~l~~~r~l~G~g~  184 (487)
                      ..-|.+....|++.....++..+++...|.+.||.. -|.+.++......++..... +   ....+.++....+.|++.
T Consensus       294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            344556678899999999999999999999999985 35555555555555532211 1   123455677778888888


Q ss_pred             hhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc---hHH-HHHHHHHHHHHHHHHHhhcccc
Q 011369          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRY-AFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~---wr~-~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      ....|...-+-.|..-|..-+.-.|+.....++=.++-..+-+.+.+..+   |.+ .-+......++..++..++.|+
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            88999999998888655555555666665555544444455555555444   333 3333333334444555555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.88  E-value=0.028  Score=53.86  Aligned_cols=120  Identities=16%  Similarity=-0.005  Sum_probs=91.2

Q ss_pred             ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhh------cch----hHHHHHHHHHHh
Q 011369          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------SSF----DFWSIAICRMLV  180 (487)
Q Consensus       111 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~a~----~~~~l~~~r~l~  180 (487)
                      .-|+++..+|..-+...+....+.....++.+|+|..|.-+.+......+..++.      -.+    +...++.+-++.
T Consensus       287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S  366 (432)
T PF06963_consen  287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS  366 (432)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence            3499999999999999999999999999999999999888887765444333332      222    344445555555


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  230 (487)
                      =+|-=.+--...-++.|..|+++||...|.-.+..++-.++-..++-.+.
T Consensus       367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            55555566778889999999999999999999988888777776655444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.81  E-value=0.0016  Score=60.05  Aligned_cols=58  Identities=21%  Similarity=0.065  Sum_probs=3.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccce
Q 011369          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (487)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~  479 (487)
                      .+.+..++.++++++..|-.....+.+.++.+++++|..+..+. ...-..|-.+|..+
T Consensus       246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~-~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVM-SFFLSFGLFIGSVL  303 (309)
T ss_dssp             ---------------------HHHH----------------------------------
T ss_pred             cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            45566777788888888777777788888999888887777765 44455566666555

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.44  E-value=0.042  Score=52.89  Aligned_cols=83  Identities=11%  Similarity=0.030  Sum_probs=65.6

Q ss_pred             HHHHHHH-HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHH
Q 011369          171 WSIAICR-MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (487)
Q Consensus       171 ~~l~~~r-~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~  249 (487)
                      +.+++.. ++.|.+.-.......++-+|...+++++.+.++++.....+..+||++........|.|+...+.+...++.
T Consensus       388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            3444443 456777776777788899999999999999999999999999999999998888888888877776665544


Q ss_pred             HHHH
Q 011369          250 AVLA  253 (487)
Q Consensus       250 ~~~~  253 (487)
                      ..+.
T Consensus       468 ~~l~  471 (488)
T KOG2325|consen  468 AALW  471 (488)
T ss_pred             HHHH
Confidence            4333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.91  E-value=0.0071  Score=60.07  Aligned_cols=127  Identities=12%  Similarity=0.057  Sum_probs=0.0

Q ss_pred             CccccccccCccccchhhhHHHH-HHHHHHHHHHHhhhhcC--CCeEehhHHHHHHHHHHHhh---c-------------
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCG---S-------------  166 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~-------------  166 (487)
                      -.++.+|++++++.+++.++..+ +.++|.+++|.+..|+.  .|..+....+...+..+...   +             
T Consensus       330 KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~  409 (539)
T PF03137_consen  330 KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTV  409 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecC
Confidence            45778899999999999876666 66789999999999985  45554444444433333200   0             


Q ss_pred             --------------------------------------chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHH
Q 011369          167 --------------------------------------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (487)
Q Consensus       167 --------------------------------------a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~  208 (487)
                                                            .+++..+++..++.-+..+...+.....+-+.+|+++|..++
T Consensus       410 ~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~Al  489 (539)
T PF03137_consen  410 PYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFAL  489 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhh
Confidence                                                  011333445555555555555566666777889999999999


Q ss_pred             HHHHhhhh-hhhhhHHHHHHhhccc
Q 011369          209 SMFYMCIP-TGVALGYVYGGVVGSH  232 (487)
Q Consensus       209 ~~~~~~~~-~G~~~g~~~~~~l~~~  232 (487)
                      |+...... +|.+-||++-|.++|.
T Consensus       490 Gv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  490 GVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------
T ss_pred             hHHHHHHHhhcCcchHHHHhHHHhh
Confidence            99976655 5778899998888874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.04  E-value=0.22  Score=47.19  Aligned_cols=133  Identities=11%  Similarity=0.029  Sum_probs=95.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 011369          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~  198 (487)
                      -.|-..++.+...+.+....++.+|+|-|+.+..+...+.++..+.+..++.+....-|-..|+-.+.....-...++++
T Consensus       334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence            35556788888999999999999999988888888888899999999999999999999988866665555544444443


Q ss_pred             CCC-----------------------CchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHH
Q 011369          199 APV-----------------------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAV  251 (487)
Q Consensus       199 ~~~-----------------------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~  251 (487)
                      .-.                       ..+|...|+.+....+-+++..+..|.+.+.+| =+.+-...+++++....
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~  490 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG  490 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence            211                       134677777888888888777766666665543 34444444444444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.51  E-value=0.022  Score=57.87  Aligned_cols=133  Identities=11%  Similarity=-0.064  Sum_probs=80.6

Q ss_pred             heeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHH--
Q 011369          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAATFLGAISCLTAFCLS--  421 (487)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  421 (487)
                      ++++...+..|+.+..+++...+ .+.........+..+++|+++|++ |++     +.+.++.++..++..++....  
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~   77 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIP   77 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCc
Confidence            34444555556666566665444 333334444556778899999975 555     566666666665555443321  


Q ss_pred             ------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCC---chhHHHHHHHHHHHhhcCCCccceeeeee
Q 011369          422 ------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (487)
Q Consensus       422 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~g~~~~~~~~~g~~~~p~~~g~l~  484 (487)
                            .....+..+.+..++.++.-++..+...+.++++   .+.....++... ..+|+.+++.+.+++.
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~-iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFA-INAGSLISTIITPILR  148 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence                  1123455667777888888888888888888653   355666665333 3346666766666554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.47  E-value=0.043  Score=44.34  Aligned_cols=100  Identities=6%  Similarity=-0.114  Sum_probs=72.0

Q ss_pred             ceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q 011369          372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (487)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (487)
                      ++......++.++.+.+.+++|.|     +.++++.+...+..... ...+.+.++....+.|++.+..|...-.++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            444556677888889999999998     67777666665444443 345567777888889999999888887777777


Q ss_pred             cCCCchhHHHHHHHHHHHhhcCCCccc
Q 011369          452 VKPSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      ..++.+++..++.+.. ...+.++|..
T Consensus       118 s~~~~~~~~~~ifw~i-~~~s~i~G~~  143 (156)
T PF05978_consen  118 STEETIGRNTGIFWAI-FQSSLIFGNL  143 (156)
T ss_pred             CCHHHHhhHHHHHHHH-HHHHHHHHHH
Confidence            7778999999987444 3345555543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.01  E-value=0.16  Score=47.96  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=74.8

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeE--ehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhh
Q 011369          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL--IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (487)
Q Consensus       115 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~--l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~  192 (487)
                      +...-|.+-++..+..+++.+..|.+..++.+-.-  +.+..++.+...++++..+|+|..+++-++.+...-...+.+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455888889999999999999999777766433  3333455566667788889999999999998888888888888


Q ss_pred             hhhhhcCCCCchhHHHHHHHh
Q 011369          193 PFIDDNAPVPQKTAWLSMFYM  213 (487)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~  213 (487)
                      .-++....+++-+..+|+...
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHhccccceeeeeeeHHH
Confidence            888877777777766665543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.32  E-value=0.42  Score=43.18  Aligned_cols=75  Identities=7%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q 011369          125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  200 (487)
Q Consensus       125 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~  200 (487)
                      ...+..+...++.+.+..++|-|++++++...+...- ..=+=+.+..++-+-.+.|+|.+..+..--+|+++.-.
T Consensus        66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3445556666677789999999999998888775432 23334678899999999999999999888888777654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.31  E-value=0.021  Score=52.28  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             cccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011369          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  438 (487)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (487)
                      .+|++..+. .+.....+...+...+.|.+.||+|||     +..+...++..+.++. -..++.+.+++.=++.|+...
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTS  136 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATS  136 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH
Confidence            477776565 333444566677778889999999999     6777766666666653 334556666666666666666


Q ss_pred             ccCCCeeEEEE-----eecCCCchhHHHHH
Q 011369          439 ATQAPVNYVCL-----HSVKPSLRALSMAI  463 (487)
Q Consensus       439 ~~~~~~~~~~~-----~~~~~~~r~~~~g~  463 (487)
                      ..+...-++..     +.+|++..+...+.
T Consensus       137 LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~  166 (354)
T PF05631_consen  137 LLFSAFESWMVHEHNKRGFPQEWLSDTFSL  166 (354)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            55554433332     23444444444443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.96  E-value=2  Score=37.85  Aligned_cols=135  Identities=15%  Similarity=0.055  Sum_probs=84.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhhhhcCCCe--EehhHHHHHHHHHHHh----hcch---hHHHHHHHHHHhhhhhhhhhh
Q 011369          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFR--LIGVGLSVWTFATAGC----GSSF---DFWSIAICRMLVGVGEASFIS  189 (487)
Q Consensus       119 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~----~~a~---~~~~l~~~r~l~G~g~g~~~~  189 (487)
                      .|.+.+.+++...+|+-+..++..|-..|-  .+.+..++.+....+.    ..+|   +...=+++-++.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            488999999999999999988888765542  3333333333322222    2222   122224555555677888999


Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011369          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      ....+=+++.|++.|...+.++..-.++=..++-..--.-....+=|..|-++.+...+..+..
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999999888766554333322110000011345788888887766654443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=91.87  E-value=0.052  Score=50.05  Aligned_cols=107  Identities=15%  Similarity=0.081  Sum_probs=3.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHH--HHHHHHHHHhh----------cchhHHHHHHHHHHhhhhhhhhh
Q 011369          122 LSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGL--SVWTFATAGCG----------SSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       122 ~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~--~~~~~~~~~~~----------~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      ....|.++-.+|....++.-=+ -.+|++.+.+.  +++....++|.          .-+|-+..++.-++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            3456777878888777654211 13444443321  22322233331          23456777888999999999999


Q ss_pred             hhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh
Q 011369          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  228 (487)
                      +....+..+..++++|..+-.+......+|..+|..++-.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888888888876543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=90.69  E-value=0.071  Score=37.70  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             eeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          347 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (487)
Q Consensus       347 ~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (487)
                      +.+...+|...++ .+++..+. .+.+...++..+|.+...++.++.+++     +.+..+.+...+..+.....++.+
T Consensus         9 FayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    9 FAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             HHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhchH
Confidence            3444566766655 67776666 666777788888888888777775544     566666666666666666555544

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=89.21  E-value=0.05  Score=49.77  Aligned_cols=109  Identities=17%  Similarity=0.115  Sum_probs=63.3

Q ss_pred             eeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeeEE
Q 011369          370 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYV  447 (487)
Q Consensus       370 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (487)
                      ......+...++.+..|.+.||.|||     +.+...........+......  ..+..++.....+++.+...+....+
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33445566666779999999999887     344443332222222222222  24444444444566666666666777


Q ss_pred             EEeecCC-CchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          448 CLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       448 ~~~~~~~-~~r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      ..+..++ +.|+...+.........|..++|.+.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL  155 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766 57888888763334555666666554443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=87.99  E-value=2.5  Score=39.17  Aligned_cols=122  Identities=16%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH------HHhhcc------hhHHHHHHHHHHhhhhhhh--hhhhhh
Q 011369          127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT------AGCGSS------FDFWSIAICRMLVGVGEAS--FISLAA  192 (487)
Q Consensus       127 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~------~~~~~a------~~~~~l~~~r~l~G~g~g~--~~~~~~  192 (487)
                      .....+..++.|...|+..|+|++...+.+.=+..      ++..+.      .++..+..+-++.-.-.+.  ....+.
T Consensus        73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~  152 (503)
T KOG2601|consen   73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG  152 (503)
T ss_pred             HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34456677788888999999998877766532222      222222      2455544444333222111  111111


Q ss_pred             h--hhhhcC----CCCchhHHH---HHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHH
Q 011369          193 P--FIDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (487)
Q Consensus       193 ~--~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~  248 (487)
                      .  +-.||.    ..+.+....   +.....-..-..+.|.+.|.+....+-|..-.+.++..++
T Consensus       153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            1  223332    233344333   5555556667789999999999888877765555555554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=85.26  E-value=11  Score=36.93  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=58.1

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHH
Q 011369          176 CRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (487)
Q Consensus       176 ~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~  249 (487)
                      .-++.|+........--..+.+.+| +++|+..+|-++...++..++..++++.+.+.+||+....+.-++.++.
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3345677777777777788888887 4578999999999888888777878899999999998887776665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.21  E-value=2.5  Score=38.10  Aligned_cols=115  Identities=10%  Similarity=0.054  Sum_probs=79.7

Q ss_pred             cccccC-ccccchhhhHHHHHHHHHHHHHHHhhhhcCCCe---E---ehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Q 011369          110 GDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR---L---IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (487)
Q Consensus       110 ~~~~~s-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~---~---l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (487)
                      +.+..+ +.|.-|....|.+|..+..--     -++=+-+   .   +-.-.+++.+...+..+.++++..++.-+..|+
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS-----~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL  354 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISRSS-----INLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL  354 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEecc-----ceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            444444 345778888888776442211     1111111   1   111223344455566778999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhh
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  229 (487)
                      -.|..++...--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus       355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            99999998888888888889999999999999999988887776443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=83.95  E-value=4.5  Score=38.28  Aligned_cols=106  Identities=19%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             chhhhH-HHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH--HH-h------hcchhHHHHHHHHHHhhhhhhhhhh
Q 011369          120 GVLSSA-FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AG-C------GSSFDFWSIAICRMLVGVGEASFIS  189 (487)
Q Consensus       120 ~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~-~------~~a~~~~~l~~~r~l~G~g~g~~~~  189 (487)
                      -.+..+ +.+.-.+|.+.+.++-+. +||+. .+..++-.+.-  +. |      .+-.+-++++..-.+.|+..|-...
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            344455 777778886666665443 34443 33433322222  21 1      2345778889999999999999999


Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHH
Q 011369          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (487)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  227 (487)
                      ..+.+..+-++++++-.+-.+.......|...|..++.
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999988888888888888888877653

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=83.25  E-value=16  Score=31.31  Aligned_cols=46  Identities=15%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             hcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHH
Q 011369          197 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  243 (487)
Q Consensus       197 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~  243 (487)
                      |+...+++.+.-.......-++..+|..+++.+.+..+.+ ..++.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~  198 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPA  198 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHH
Confidence            3333344433444555556667777778888888777753 334333

The function of this family is unknown although a few members are thought to be membrane proteins.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=81.42  E-value=21  Score=35.20  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCC-CCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 011369          177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (487)
Q Consensus       177 r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (487)
                      -+..|+........--..+.+.+| ++++...+|-++...++-.++-..+++.+.+.+||+..-.+.=++.++..+
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~  364 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL  364 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence            344567777777777777888887 456788888888888777777778889999999999888877555444443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=81.11  E-value=1.3  Score=41.23  Aligned_cols=143  Identities=12%  Similarity=0.065  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHhhheeeeecccceeeecccccccceeeeceeecccchhhhhhhhhHh-----hhcccchhhhHHHH
Q 011369          330 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILD-----QMGATISNAFKLLS  404 (487)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~~~~  404 (487)
                      +.+......+..++....... .+|.+++. .+.|-.+..+...... -.--.++...++|     |+|||+.   ++.-
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~-P~sLKllWaPiVDs~y~k~~Grrks---Wvvp  104 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYW-PFSLKLLWAPIVDSVYSKRFGRRKS---WVVP  104 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhh-HHHHHHHHHhhhHHHHHHhhccccc---eeee
Confidence            556666677788887766555 78988885 4555333211111111 1223456777888     9999964   2223


Q ss_pred             HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCC
Q 011369          405 AATFLGAISCLTAFCLS----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  474 (487)
Q Consensus       405 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~  474 (487)
                      ....++..+.++....+          +.......+++..+..+.-=..+-.+..+...++..|-++.. +......|.+
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~-q~Vg~~~Gyf  183 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC-QSVGQTAGYF  183 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH-HHHHHhhhHH
Confidence            33333333333333221          111121223333443332223345566666777777766665 3556666666


Q ss_pred             Cccce
Q 011369          475 PSSPL  479 (487)
Q Consensus       475 ~~p~~  479 (487)
                      +|-.+
T Consensus       184 L~~~i  188 (510)
T KOG3574|consen  184 LGNVV  188 (510)
T ss_pred             hhcce
Confidence            55444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.14  E-value=5.9  Score=40.63  Aligned_cols=62  Identities=16%  Similarity=0.011  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhh-hhhhhHHHHHHhhcc
Q 011369          170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP-TGVALGYVYGGVVGS  231 (487)
Q Consensus       170 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~g~~~~~~l~~  231 (487)
                      +..+++..++.-+..+...+..+.++-+.+++|+|..++|+...... +|.+-+|++-|+++|
T Consensus       586 ~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  586 FLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             hHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence            34455555555555555667778888899999999999999977765 688889999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	487
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 57/452 (12%), Positives = 123/452 (27%), Gaps = 57/452 (12%)

Query: 40  LAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDK 99
              A    R  + +  PT      +  L IF       Y+ R   A              
Sbjct: 4   FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGY-AAYYLVRKNFA-------------- 48

Query: 100 GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 159
               +   +  +   +    G   S   +    +  I  S++   NP   +  GL +   
Sbjct: 49  ---LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104

Query: 160 ATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI 215
                G    ++     + +   L G  +          +       ++   +S++    
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164

Query: 216 PTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--KPLQLKGFAPAESGKA 272
             G  +   ++   +    +W  A +  A   +  A+ AF +     Q  G  P E  K 
Sbjct: 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224

Query: 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY 332
                 +E +E               A +  ++ +  ++ L                   
Sbjct: 225 DYPDDYNEKAEQ-----------ELTAKQIFMQYVLPNKLL------------------- 254

Query: 333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-VCGIVGTISGGFILDQ 391
               +  +    +      W P     + H +     +        GI GT+  G++ D+
Sbjct: 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314

Query: 392 MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS 451
           +      A  +        A          +    +    V   L++     +    L  
Sbjct: 315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374

Query: 452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 483
                   +   + +  ++ G V +S +VG  
Sbjct: 375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 56/392 (14%), Positives = 106/392 (27%), Gaps = 128/392 (32%)

Query: 7   NRSDDVVDVDQN----SQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFT 62
           N  + V+++ Q       PN   +   S ++  R   +   +   R L +  P       
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKP------Y 243

Query: 63  PKRLLVIFCVINMLNYV-DRGAIASNGVNGSQR---TCDDKGICTS-GSGIQGDFKLNNF 117
              LLV       L  V +  A   N  N S +   T   K +     +       L++ 
Sbjct: 244 ENCLLV-------LLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 118 QDGVLSSAFMVGLL--VASPIFASL---AKSHNPFR--LIGVGLSVWTFATAGCGSSFDF 170
               L+   +  LL          L     + NP R  +I   +           +++D 
Sbjct: 295 SMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-------ATWDN 346

Query: 171 WSIAICRMLVGVGEAS------------FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218
           W    C  L  + E+S            F  L+  F   +A +P          + +   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F-PPSAHIPTIL-------LSL--- 394

Query: 219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV 278
                                W +    +  + +  V+  L        +  K       
Sbjct: 395 --------------------IWFD----VIKSDVMVVVNKLHKYSLV-EKQPK------- 422

Query: 279 SEGSEASNLNDHVSEDISDQASERSI--KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
                  ++   +  ++  +        +SI +    N    F  D  +           
Sbjct: 423 ---ESTISIPS-IYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLD------ 470

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM 368
             Y         YS+ G       +H+ N + 
Sbjct: 471 -QYF--------YSHIG-------HHLKNIEH 486

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT-- 205
             + +  ++ +    G   +     + I + L        +     +I     V      
Sbjct: 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349

Query: 206 -AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264
                 F+  +   +    V  G +   + ++ A+    ++ L F +++       L G 
Sbjct: 350 YLVCFCFFKQL--AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGP 403

Query: 265 APAESGKAQV 274
            P    + QV
Sbjct: 404 GPLSLLRRQV 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.98
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.94
2xut_A	524	Proton/peptide symporter family protein; transport	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.55
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.43
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.38
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.34
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.97
2xut_A	524	Proton/peptide symporter family protein; transport	98.8

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.9e-38  Score=309.45  Aligned_cols=372  Identities=12%  Similarity=0.065  Sum_probs=289.0

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      +++.+..+++..+..+++...++..                 +|.+.+++ .+..+.+++.+++.++..++++++|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d   87 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD   87 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3456777777778888777766643                 48899999 99999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhc----chhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (487)
                      |+|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus        88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A           88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999    9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchh
Q 011369          219 VALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (487)
Q Consensus       219 ~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (487)
                      .+++|++++.+.+..| ||+.|++.+++.++..++.++..||++++...++.++...  .         . ++   +.+ 
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~-~~---~~~-  231 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--D---------Y-PD---DYN-  231 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC--C--------------------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc--c---------c-cc---cch-
Confidence            9999999999888888 9999999999888877777777777544322111110000  0         0 00   000 


Q ss_pred             hhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (487)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (487)
                       .  ..++.       ...++  ...++++++|.++...+..++.......+..+.|.|+++.++.+.... .+..+..+
T Consensus       232 -~--~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  299 (451)
T 1pw4_A          232 -E--KAEQE-------LTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  299 (451)
T ss_dssp             -----------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             -h--hhhcc-------ccccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             0  00000       00000  114567889999999998888888888889999999998888886655 55566778


Q ss_pred             ccchhhhhhhhhHhhh--cccchhhhHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q 011369          377 CGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (487)
Q Consensus       377 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (487)
                      +.+++.++.+++.||+  ++|     +.+..+..+.. +..++....  .+.+......++.+++.+...+....+..+.
T Consensus       300 ~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  374 (451)
T 1pw4_A          300 AGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL  374 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            8999999999999999  777     55555554444 333333322  2455566666677777777777667888899


Q ss_pred             cCCCchhHHHHHHHHHHHhh-cCCCccceeeeeecc
Q 011369          452 VKPSLRALSMAISTVSIHIF-GDVPSSPLVGVLQVC  486 (487)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~-g~~~~p~~~g~l~~~  486 (487)
                      .|++.|+++.|+. .....+ |..++|.+.|++.|+
T Consensus       375 ~~~~~~g~~~~~~-~~~~~~~g~~~~~~~~g~l~~~  409 (451)
T 1pw4_A          375 APKKAAGTAAGFT-GLFGYLGGSVAASAIVGYTVDF  409 (451)
T ss_dssp             SCTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999997 556666 888999999988775

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=8e-38  Score=303.87  Aligned_cols=351  Identities=18%  Similarity=0.219  Sum_probs=280.1

Q ss_pred             chhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhh
Q 011369           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (487)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr  143 (487)
                      ++.+..+++..+..+++....+..                 +|.+.+++|++..+.+++.+++.++..++++++|+++||
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr   87 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK   87 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345666666777777776665542                 488999999999999999999999999999999999999


Q ss_pred             cCCCeEehhHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhh
Q 011369          144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (487)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (487)
                      +|||++++++.++.+++.+++   ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..
T Consensus        88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  167 (438)
T 3o7q_A           88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI  167 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   88999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhc-cccc-------------------------hHHHHHHHHHHHHHHHHHHhhcc-ccccCCCCCCCcccch
Q 011369          221 LGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQ  273 (487)
Q Consensus       221 ~g~~~~~~l~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~  273 (487)
                      +++++++.+. +..+                         ||+.|++.+++.++..++.++.. ||..++.+++++    
T Consensus       168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----  243 (438)
T 3o7q_A          168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK----  243 (438)
T ss_dssp             HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS----
T ss_pred             HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc----
Confidence            9999999988 5554                         99999988887766665554432 332111000000    


Q ss_pred             hhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecc
Q 011369          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (487)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (487)
                                                                ..+..+.+++++++|.++...+..++.......+..+.
T Consensus       244 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 3o7q_A          244 ------------------------------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL  281 (438)
T ss_dssp             ------------------------------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                      00112356678899999998888888888888888999


Q ss_pred             cce-eeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011369          354 PKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFT  431 (487)
Q Consensus       354 p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (487)
                      |.| +++.++.+.... ....+..++.+++.++.+++.||+++|     +.+..+.++..+..++....++.+. +...+
T Consensus       282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  355 (438)
T 3o7q_A          282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALT  355 (438)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHH
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHH
Confidence            999 888778886655 555666788899999999999999998     6777766666666655555444443 34446


Q ss_pred             HHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          432 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.+++.+..++....+..+.+|++ ++.+.++. . .+.+|.+++|.+.|++.|+
T Consensus       356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-V-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH-H-HTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH-H-HHHHHHHHHHHHHHHHHHH
Confidence            677777777777777778888766 88888885 4 5567888999999988774

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=4.4e-36  Score=285.34  Aligned_cols=344  Identities=13%  Similarity=0.086  Sum_probs=270.0

Q ss_pred             HHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCe
Q 011369           69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR  148 (487)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  148 (487)
                      .+++..+...++...+..                 .+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~   66 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIP-----------------AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP   66 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----------------HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHhh-----------------hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            345555555555555553                 248899999999999999999999999999999999999999999


Q ss_pred             EehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHh
Q 011369          149 LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (487)
Q Consensus       149 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  228 (487)
                      +++.+.++.+++.++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  146 (375)
T 2gfp_A           67 VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL  146 (375)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhcccc
Q 011369          229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  308 (487)
Q Consensus       229 l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (487)
                      +.++.+||+.|++.+++.++..+...+..||++++.++++  +                                     
T Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------------------  187 (375)
T 2gfp_A          147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--R-------------------------------------  187 (375)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--C-------------------------------------
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--c-------------------------------------
Confidence            9998999999999998887777656666666432211000  0                                     


Q ss_pred             ccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhh
Q 011369          309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF  387 (487)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  387 (487)
                                ..+++++++++|.++...+..++.......+..+.|.|+++..+.++... .+.....++.+++.++.++
T Consensus       188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  257 (375)
T 2gfp_A          188 ----------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR  257 (375)
T ss_dssp             ----------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             ----------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00123455677888888888888888888888999999998778776555 4455666777888888888


Q ss_pred             hHhhhcccchhhhHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHH
Q 011369          388 ILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (487)
Q Consensus       388 l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (487)
                      +.||.+++     ....... .......+....  .++.+..++..++.+++.+...+....+..+..| ++|+++.|+.
T Consensus       258 l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~  331 (375)
T 2gfp_A          258 PNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV  331 (375)
T ss_dssp             TTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence            88887763     2222221 111111111111  2355556667777888888888888888888887 8999999997


Q ss_pred             HHHHHhhcCCCccceeeeeec
Q 011369          465 TVSIHIFGDVPSSPLVGVLQV  485 (487)
Q Consensus       465 ~~~~~~~g~~~~p~~~g~l~~  485 (487)
                       .....+|..++|.+.|.+.|
T Consensus       332 -~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          332 -GGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             -HHHHHHHHHCCSTTCTHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHhc
Confidence             56677788899999988765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=3.9e-33  Score=274.87  Aligned_cols=371  Identities=11%  Similarity=0.001  Sum_probs=249.2

Q ss_pred             cccccCccccchhhhHHHHHHHHHHHHHHHhhhh-cCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhh
Q 011369          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (487)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~  188 (487)
                      +|+|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++++|++.++++|+++|++.+...
T Consensus        47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            3499999999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCc--hhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 011369          189 SLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP  266 (487)
Q Consensus       189 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~  266 (487)
                      +...+++.|++|+++  |+.++++++.+.++|..++|++++.+.++.|||+.|++.++..++..++.++..|+..++..+
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  778889899999999999999999999999999999999887766666555554443322111


Q ss_pred             CCccc-chhhccc-ccC----------------cccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhc
Q 011369          267 AESGK-AQVVASV-SEG----------------SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  328 (487)
Q Consensus       267 ~~~~~-~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (487)
                      +++.+ ...+..+ .+.                ..+....++..... ..... ...   ........++.....+...+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~  281 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL-TIVAI-AIP---VFYFAWMISSVKVTSTEHLR  281 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH-HHHHH-HHH---HHHHHHHC------------
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh-hHHHH-HHH---HHHHHHHhhcccccHHHHHH
Confidence            11110 0000000 000                00000000000000 00000 000   00000000000000111112


Q ss_pred             chhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHH
Q 011369          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (487)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  407 (487)
                      ....+...+..+...........++|.|.++..+.+.... .......++.+++.++.+++.||++||+......+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL  361 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence            2233444444455555555566677888877666663333 445566677888899999999999998543323344555


Q ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccc
Q 011369          408 FLGAISCLTAFCLS---------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  478 (487)
Q Consensus       408 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~  478 (487)
                      .+..+..++.....         +.+..+...++.+++.+...+....+..+..|++.|+++.|+. .....+|..++|.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~i~~~  440 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW-FLSSSVGSALNAQ  440 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            55555544443322         4455666777788888887888888999999999999999997 6677778889999


Q ss_pred             eeeeeecc
Q 011369          479 LVGVLQVC  486 (487)
Q Consensus       479 ~~g~l~~~  486 (487)
                      +.|++.|.
T Consensus       441 ~~~~~~~~  448 (491)
T 4aps_A          441 LVTLYNAK  448 (491)
T ss_dssp             HGGGGGGS
T ss_pred             HHHHHhcc
Confidence            98887653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.98  E-value=1.2e-33  Score=278.68  Aligned_cols=377  Identities=14%  Similarity=0.107  Sum_probs=243.4

Q ss_pred             hhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCcccccccc--------CccccchhhhHHHHHHHHHHHHH
Q 011369           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPIF  137 (487)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~  137 (487)
                      +..+.+++.+..++|.+.++..                 +|.+.++++.        +..+.|++.+++.+|..++++++
T Consensus        13 i~~~a~lg~~~~Gyd~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~   75 (491)
T 4gc0_A           13 ITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALG   75 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGT-----------------HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566778888999988753                 3667766643        34567899999999999999999


Q ss_pred             HHhhhhcCCCeEehhHHHHHHHHHHHhh------------------cchhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Q 011369          138 ASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (487)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~  199 (487)
                      |+++||+|||++++++.+++.+++++++                  +++|+++++++|+++|+|.|...+....+++|+.
T Consensus        76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~  155 (491)
T 4gc0_A           76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA  155 (491)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999998                  4789999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc--------ccchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCccc
Q 011369          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  271 (487)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  271 (487)
                      |+++|++..++.+.+..+|.++++.++..+..        ..+||+.+.+..++.++..+. .+..||++++...+++.+
T Consensus       156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~  234 (491)
T 4gc0_A          156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQE  234 (491)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHH
T ss_pred             CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchh
Confidence            99999999999999999999999988876653        246888888887776655444 445577765432222221


Q ss_pred             chhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhH-HHHHHHHHHHHhhheeee
Q 011369          272 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY-VVNVLGYIAYNFVIGAYS  350 (487)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  350 (487)
                      +..+..++..  ..+   +..+    +..+....       ....++. .......+.+.. .......+.+..+.+.+.
T Consensus       235 ~a~~~l~~~~--~~~---~~~~----~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (491)
T 4gc0_A          235 QAEGILRKIM--GNT---LATQ----AVQEIKHS-------LDHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVL  297 (491)
T ss_dssp             HHHHHHHHHH--HHH---HHHH----HHHHHHHH-------HHHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhHHHhc--CCc---hhHH----HHHHHHHH-------HHhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHH
Confidence            1111000000  000   0000    00000000       0000000 011112233333 333334444455555566


Q ss_pred             ecccceeeecccccccceeeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 011369          351 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGF  426 (487)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  426 (487)
                      .|.|.+.++....+........+..+..+++.++++++.||+|||     +.+..+.....+..+......    ..+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  372 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVA  372 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHH
Confidence            666666655433222222344556678888999999999999999     566555555555444333221    12223


Q ss_pred             HHHHHHHHHHHhccCCC-eeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeee
Q 011369          427 LALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (487)
Q Consensus       427 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l  483 (487)
                      +...++...+++..+.+ .+.+..|.+|++.|+++.|+. ...+.+++++++.+.+.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~-~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA-VAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH-HHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            33333444444444443 356677888889999999997 555555666666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.94  E-value=8.9e-30  Score=244.96  Aligned_cols=332  Identities=12%  Similarity=0.031  Sum_probs=211.5

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHH---HHhhcchhHH-HHHHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~a~~~~-~l~~~r~l~G~g  183 (487)
                      +++++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+++++.   ..+++++... .++..+++.|++
T Consensus        34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (417)
T 2cfq_A           34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY  113 (417)
T ss_dssp             HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667799999999999999999999999999999999999999998888765432   2223333221 245667777777


Q ss_pred             hhhhhhhhhhhhhhcCCC--CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          184 EASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      .+...+.....+.++.++  ++|+...+.......+|..++|.+++.+.+ .+||+.|++.+++.++..+..++..||++
T Consensus       114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T 2cfq_A          114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred             HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            666665555555555443  356777788888899999999999999886 58999999887765444443333333321


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                      +. . +++++.             +.  + .           +            +...++.++++++|.++...+..+.
T Consensus       193 ~~-~-~~~~~~-------------~~--~-~-----------~------------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (417)
T 2cfq_A          193 SS-A-TVANAV-------------GA--N-H-----------S------------AFSLKLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             CS-S-CSSSSS-------------SS--C-C-----------C------------CCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cc-c-cccccc-------------cc--c-c-----------c------------cccHHHHHHHhcCCchhhHHHHHHH
Confidence            10 0 000000             00  0 0           0            0001234556778887776655444


Q ss_pred             HHhhheeeeecccceeeeccccc---ccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 011369          342 YNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (487)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (487)
                      ....+..+..++|.|+.+.++..   .... ....+..++.+++.++.++++||+++|     +.+..+..+.++..+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHH
Confidence            44444444455676665543321   1111 223344566778899999999999988     66665555555444333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ...++.+..++..++.+++.....+....+..+..|++.|+++.+......+.+|++++|.+.|++.|+
T Consensus       307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~  375 (417)
T 2cfq_A          307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES  375 (417)
T ss_dssp             TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence            333344444444444444444444444567788888899999999843455667888999999988764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.94  E-value=1.6e-27  Score=236.81  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=138.7

Q ss_pred             Cccccccc------cCccccchhhhHHHHHHHHHHHHHHHhhhhc-CCCeEehhHHHHHHHHHHHhhcch-hHHHHHHHH
Q 011369          106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR  177 (487)
Q Consensus       106 ~~i~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r  177 (487)
                      +.+.+++|      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34677888      9999999999999999999999999999999 999999999999999999999999 999999999


Q ss_pred             HHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHH---HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHh
Q 011369          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       178 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      +++|++.+...+...+++.|++|+++|+++.+.   ++.+.++|..++|.+++.+.+..+||+.|++.+++.++..+..+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876666   89999999999999999999889999999999888766555544


Q ss_pred             hccc
Q 011369          255 VIKP  258 (487)
Q Consensus       255 ~~~p  258 (487)
                      +..|
T Consensus       197 ~~~~  200 (524)
T 2xut_A          197 LGRK  200 (524)
T ss_dssp             SSSS
T ss_pred             Hhcc
Confidence            4333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.55  E-value=9.9e-15  Score=141.65  Aligned_cols=150  Identities=11%  Similarity=-0.036  Sum_probs=133.0

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhc--CCCeEehhHHHHHH-HHHHHhhcc--hhHHHHHHHHHHhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRMLVGV  182 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~a--~~~~~l~~~r~l~G~  182 (487)
                      +++.+|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++..+.. ++.++..+.  .+.+.+.+..++.|+
T Consensus       279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  358 (451)
T 1pw4_A          279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  358 (451)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            4444899999999999999999999999999999999  99999888877776 677777766  378888889999999


Q ss_pred             hhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       183 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      +.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 9999999999999999999999999988877766665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.43  E-value=2.3e-13  Score=130.39  Aligned_cols=145  Identities=8%  Similarity=0.010  Sum_probs=126.1

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011369          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF  194 (487)
Q Consensus       115 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~~~~~~~~  194 (487)
                      +..+.++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788888888899999999999999999999999998888888888888888888888888898887777778899


Q ss_pred             hhhcCCCCchhHHHHH-HHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      +.|.+|++.|+.+.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999998 4888889999999999999988899999999988887777666665554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.38  E-value=4e-12  Score=124.67  Aligned_cols=151  Identities=14%  Similarity=0.059  Sum_probs=125.5

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEeh-----hHHHHHHHHHHHhhcch---------hHHHH
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI  173 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~a~---------~~~~l  173 (487)
                      ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++.++..         +.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            34446766678899999999999999999999999999998877     78888888877776643         77888


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 011369          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (487)
Q Consensus       174 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (487)
                      .+.-++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+. ++.+.|++.+++.++..++.
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999888764 67788888888887777777


Q ss_pred             hhcccc
Q 011369          254 FVIKPL  259 (487)
Q Consensus       254 ~~~~p~  259 (487)
                      ++..++
T Consensus       469 ~~~~~~  474 (491)
T 4aps_A          469 VFLSKR  474 (491)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            666554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.34  E-value=1.1e-12  Score=126.72  Aligned_cols=140  Identities=9%  Similarity=-0.128  Sum_probs=121.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g~~  187 (487)
                      +++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence            445569999999999999999999999999999999999999999999999999999988887765554 8889999999


Q ss_pred             hhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccc-hHHHHHHHHHHHHHHH
Q 011369          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA  250 (487)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~  250 (487)
                      .+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            999999999999965 888888877 566999999999999999988 9999998766544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.15  E-value=2.4e-10  Score=111.95  Aligned_cols=155  Identities=8%  Similarity=-0.023  Sum_probs=116.2

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcc-----hhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~  180 (487)
                      |.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+...-+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            55666677777677777778888899999999999999999999999888887776665432     2222222222222


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcc------ccchHHHHHHHHHHHHHHHHHHh
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAF  254 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~  254 (487)
                      +.......+....+.+|.+|.+.|++++|+......+|..+++.+...+.+      ..++.+.|++.++++++..++.+
T Consensus       381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            222223456778899999999999999999999999999888877665543      34566789999999999888888


Q ss_pred             hccccc
Q 011369          255 VIKPLQ  260 (487)
Q Consensus       255 ~~~p~~  260 (487)
                      ++.||+
T Consensus       461 ~~~PET  466 (491)
T 4gc0_A          461 KFVPET  466 (491)
T ss_dssp             HHCCCC
T ss_pred             heecCC
Confidence            888985

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.97  E-value=9e-11  Score=110.70  Aligned_cols=135  Identities=8%  Similarity=-0.019  Sum_probs=109.1

Q ss_pred             Ccccc-ccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHH-HHHHHHHhhc----chhHHHHHHHHHH
Q 011369          106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGS----SFDFWSIAICRML  179 (487)
Q Consensus       106 ~~i~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~----a~~~~~l~~~r~l  179 (487)
                      |.+.+ ++|.++.+.+++.+...++..++.++.+++.||+|+|  +..+..+ ...+..+...    .++.+.+++..++
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  300 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL  300 (375)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence            44444 4899999999999999999999999999999999872  2333333 2222221122    2377778889999


Q ss_pred             hhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHH
Q 011369          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  243 (487)
Q Consensus       180 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~  243 (487)
                      .|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999998 899999999999999999999999999988878888877754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.80  E-value=4.9e-09  Score=103.53  Aligned_cols=142  Identities=13%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhh----hhcCCC----eEehhHHHHHHHHHHHhhcc---------hhHHHHHHHHHHh
Q 011369          118 QDGVLSSAFMVGLLVASPIFASLA----KSHNPF----RLIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLV  180 (487)
Q Consensus       118 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Grr----~~l~~~~~~~~~~~~~~~~a---------~~~~~l~~~r~l~  180 (487)
                      ..+++.+...++..++.++.+++.    ||.|+|    +.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345555555566666776666654    555433    35667888888888777764         3778888899999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhhhhhHHHHHHhhcccc--ch---------HHHHHHHHHHHHHH
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NW---------RYAFWGEAILMLPF  249 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--~w---------r~~f~~~~~~~~~~  249 (487)
                      |++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  24         34477777776666


Q ss_pred             HHHHhhcccc
Q 011369          250 AVLAFVIKPL  259 (487)
Q Consensus       250 ~~~~~~~~p~  259 (487)
                      .++.+++.++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            6665555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-13
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 43/425 (10%), Positives = 107/425 (25%), Gaps = 52/425 (12%)

Query: 65  RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSS 124
           ++ +         Y+ R   A                         +   +    G   S
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLV------------------EQGFSRGDLGFALS 66

Query: 125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC----GSSFDFWSIAICRMLV 180
              +    +  I  S++   NP   +  GL +             ++     + +   L 
Sbjct: 67  GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126

Query: 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAF 239
           G  +          +       ++   +S++      G  +   ++   +    +W  A 
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
           +  A   +  A+ AF +                                         + 
Sbjct: 187 YMPAFCAILVALFAFAMMRDT----------------------------PQSCGLPPIEE 218

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
            +         +   +L+      + +L  K+     +  +    +      W P     
Sbjct: 219 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 278

Query: 360 IYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 418
           + H +         +    GI GT+  G++ D++      A  +        A       
Sbjct: 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 338

Query: 419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 478
              +    +    V   L++     +    L          +   + +  ++ G V +S 
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 479 LVGVL 483
           +VG  
Sbjct: 399 IVGYT 403

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 16/175 (9%), Positives = 47/175 (26%), Gaps = 5/175 (2%)

Query: 101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFA 160
                +      +      G +++   +           +         + +  ++ +  
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302

Query: 161 TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGV 219
             G   +     + I + L        +     +I     V        + +       +
Sbjct: 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV 274
               V  G +   + ++ A+    ++ L F +++       L G  P    + QV
Sbjct: 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGPGPLSLLRRQV 413

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.55
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-39  Score=309.81  Aligned_cols=376  Identities=13%  Similarity=0.045  Sum_probs=281.5

Q ss_pred             cchhhHHHHHHHHHHHhhhcccccccccCCccccCCCCcccCCCccccccccCccccchhhhHHHHHHHHHHHHHHHhhh
Q 011369           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (487)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d  142 (487)
                      +|+++..++++++..++++..++..                 .|.++ |+|+|.+|+|++.+++.+++.++++++|+++|
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   84 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD   84 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777788888888898888754                 26565 68999999999999999999999999999999


Q ss_pred             hcCCCeEehhHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhhh
Q 011369          143 SHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (487)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (487)
                      |+|||+++.++.++.+++.+++++++    +++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|
T Consensus        85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  164 (447)
T d1pw4a_          85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  164 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence            99999999999999999999988774    78899999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCcccchhhcccccCcccCCCcccccccchh
Q 011369          219 VALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (487)
Q Consensus       219 ~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (487)
                      ..+++.+++.+... .+||+.|++.+++.++..++.++..++.++....++..+...+.               .+..  
T Consensus       165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--  227 (447)
T d1pw4a_         165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY---------------PDDY--  227 (447)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------------
T ss_pred             hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc---------------ccch--
Confidence            99999998876654 47999999999998888888777776644332221111110000               0000  


Q ss_pred             hhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhheeeeecccceeeecccccccce-eeeceeec
Q 011369          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (487)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (487)
                        .+..+         ++........+..++++.++......++.....+....+.|.|+++..+.+.... ....+..+
T Consensus       228 --~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (447)
T d1pw4a_         228 --NEKAE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  296 (447)
T ss_dssp             -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             --hhccc---------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence              00000         0001111335567888999998888888888888888999999999888886665 55566778


Q ss_pred             ccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCC
Q 011369          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  454 (487)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (487)
                      ..+++.++.|++.||++++....  .......+.....+...  ...+.+..++..++.+++.+...+....+..+..|+
T Consensus       297 ~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  374 (447)
T d1pw4a_         297 AGIPGTLLCGWMSDKVFRGNRGA--TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK  374 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCHHH--HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred             hhhhhhhhhhhhhhhcccccccc--ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            88999999999999999875421  11111111111111111  123455556666667777666666677778889999


Q ss_pred             CchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       455 ~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      +.|+++.|+.+...+..|.+++|.+.|++.|+
T Consensus       375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~  406 (447)
T d1pw4a_         375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  406 (447)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999975555666777789998988775

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1e-26  Score=220.82  Aligned_cols=331  Identities=13%  Similarity=0.016  Sum_probs=221.8

Q ss_pred             cccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHH----HHHHHHhhhh
Q 011369          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLVGVG  183 (487)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l----~~~r~l~G~g  183 (487)
                      +++++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+....    ++.+.+.+.+
T Consensus        34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (417)
T d1pv7a_          34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY  113 (417)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence            677899999999999999999999999999999999999999999999999988888887765554    4556666666


Q ss_pred             hhhhhhhhhhhhhhcCCC--CchhHHHHHHHhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 011369          184 EASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (487)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (487)
                      .+...........+..++  +++.+..+........+..+++.+++.+.+. +|+..+........+..++.++..++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccc
Confidence            665555555444444332  2445567777888888999999999988864 5666666666666666666666665543


Q ss_pred             CCCCCCCcccchhhcccccCcccCCCcccccccchhhhhhhhhccccccchhhhhhhhhHHHHhhhcchhHHHHHHHHHH
Q 011369          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (487)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (487)
                      ....++++.+....+                                         ......++..+++..+........
T Consensus       193 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  231 (417)
T d1pv7a_         193 SSATVANAVGANHSA-----------------------------------------FSLKLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             SSSCSSHHHHSCCCC-----------------------------------------CCHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhccc-----------------------------------------ccccccccccccccccchhhhhHH
Confidence            322211111100000                                         000111112222222222222111


Q ss_pred             HH---hhhe-eeeecccceeeecccccccce-eeeceeecccchhhhhhhhhHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 011369          342 YN---FVIG-AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (487)
Q Consensus       342 ~~---~~~~-~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (487)
                      ..   .... ....+.+.+..+ .+.+.... .......++..++..+.+++.||.+++     +.+..+..+..+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~  305 (417)
T d1pv7a_         232 VSCTYDVFDQQFANFFTSFFAT-GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccccc-cccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHhhhc
Confidence            11   1111 111222222222 22232222 333455677788999999999999998     7777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeecCCCchhHHHHHHHHHHHhhcCCCccceeeeeecc
Q 011369          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQVC  486 (487)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~p~~~g~l~~~  486 (487)
                      ....++.+..++..++.+++.+...+....+..+.+|++.|+++.|+.....+.+|.+++|.+.|++.|+
T Consensus       306 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~  375 (417)
T d1pv7a_         306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES  375 (417)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777878888888888888888888889999999999999999864556667888999999998875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.2e-15  Score=143.50  Aligned_cols=154  Identities=7%  Similarity=-0.018  Sum_probs=139.2

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~g~g  185 (487)
                      +...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP  327 (417)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence            33445556677788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCCchhHHHHHH-HhhhhhhhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcccc
Q 011369          186 SFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (487)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (487)
                      ...+....++.|.+|+++|+++.++. +....+|..++|.++|.+.++.||+..|++.+++.++..++..+..++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999985 566779999999999999999999999999999988888777777644

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.1e-13  Score=131.72  Aligned_cols=152  Identities=11%  Similarity=-0.040  Sum_probs=122.6

Q ss_pred             CccccccccCccccchhhhHHHHHHHHHHHHHHHhhhhcCCCeEehhHHHHHH---HHHHHh--hcchhHHHHHHHHHHh
Q 011369          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGC--GSSFDFWSIAICRMLV  180 (487)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~--~~a~~~~~l~~~r~l~  180 (487)
                      ..+.+.++.+..+.++..+...++..++.++.|++.||++||+..........   ++.+..  ....+.+..+++-++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34667789999999999999999999999999999999998875443333322   222222  2345778888888999


Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCchhHHHHHHHhhhhh-hhhhHHHHHHhhccccchHHHHHHHHHHHHHHHHHHhhcc
Q 011369          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (487)
Q Consensus       181 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (487)
                      |++.+...+....++.|.+|+++|+++.|+.+....+ |.+++|.+.+.+.++.||+..|++.++..++..++..++.
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888999999999999999999999999887766 5677899999999999999999998887777666665554