Citrus Sinensis ID: 011394
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | yes | no | 0.989 | 0.991 | 0.886 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.981 | 0.989 | 0.889 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.981 | 0.995 | 0.864 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.993 | 0.993 | 0.752 | 0.0 | |
| Q9SH69 | 487 | 6-phosphogluconate dehydr | no | no | 0.991 | 0.991 | 0.747 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.979 | 0.888 | 0.750 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.979 | 0.938 | 0.703 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.956 | 0.989 | 0.571 | 1e-152 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.944 | 0.980 | 0.545 | 1e-146 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.950 | 0.960 | 0.554 | 1e-144 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/483 (88%), Positives = 466/483 (96%), Gaps = 1/483 (0%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPE 65
Q TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF DPE
Sbjct: 4 QPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPE 63
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
SFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCI+DGGNEWYENTERREKA+AE
Sbjct: 64 SFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAEN 123
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
G LYLGMGVSGGEEGAR+GPS+MPGGS+EAYK IEDI+LKVAAQV DSGPCVTY+ KGGS
Sbjct: 124 GFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGS 183
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245
GNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL +VF++WNKGEL SFL+EITADI
Sbjct: 184 GNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADI 243
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
FGIKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTI SSLDARFLSGLK+ERV
Sbjct: 244 FGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERV 303
Query: 306 EAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 364
+AAKVFK+GGFG + ++Q VDK++L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LK
Sbjct: 304 QAAKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 424
LGELARIWKGGCIIRA+FLDRIK+AYDRNA+LANLLVDPEFAKEI++RQSAWRRVVCLAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 425 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 484
NSGISTPGMS+SLAYFDSYRRERLPANLVQAQRDYFGAHTYER D+EGSFHTEWFKIA+Q
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQ 483
Query: 485 SKI 487
SKI
Sbjct: 484 SKI 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/481 (88%), Positives = 460/481 (95%), Gaps = 3/481 (0%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LPL+GF DPESF
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
VNSIQKPRVIIMLVKAGAPVD TIKTLSAY+EKGDCIIDGGNEWYENTERREKAM E GL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPS+MPGGSF+AYK IEDIL KVAAQV DSGPCVTY+ KGGSGN
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQV-DSGPCVTYIGKGGSGN 183
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEEL+ VF EWN+GELLSFLIEITADIFG
Sbjct: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFG 243
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIASSLD+RFLSGLK+ERVEA
Sbjct: 244 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEA 303
Query: 308 AKVFKSGGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
AKVFK+GG S+Q VDK+KLIDDVRQALYA+KICSYAQGMNLIRAKS+EK WDLKLG
Sbjct: 304 AKVFKAGGVEDTLSDQVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKLG 363
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
ELARIWKGGCIIRA+FLDRIKKAYDRN +L+NLL+DPEF+KE+++RQSAWRRVVCLAI +
Sbjct: 364 ELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIGA 423
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERID+ G+FHTEWFK+AK SK
Sbjct: 424 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKLAK-SK 482
Query: 487 I 487
I
Sbjct: 483 I 483
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/481 (86%), Positives = 457/481 (95%), Gaps = 3/481 (0%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
+TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EG+LP++GF DP S
Sbjct: 3 VTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPAS 62
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRV+IMLVKAGAPVD+TI TL+A++E+GDCIIDGGNEWYENTERREKAM E G
Sbjct: 63 FVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERG 122
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 123 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVGKLTN ELQ VF+EWNKGELLSFLIEITADIF
Sbjct: 183 NFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADIF 242
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 306
IKDD+G G+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD+RFLSGLK+ERVE
Sbjct: 243 SIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERVE 302
Query: 307 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
AAKVF+ G F SN VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L LG
Sbjct: 303 AAKVFQ-GDF--SSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLG 359
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
ELARIWKGGCIIRA+FLDRIKKAYDRN+DLANLLVDPEFA+EI+DRQ+AWRRVVCLAIN+
Sbjct: 360 ELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINN 419
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
G+STPGMS+SLAYFDSYRR+RLPANLVQAQRDYFGAHTYER+DM GSFHTEWFKIA+ +K
Sbjct: 420 GVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK 479
Query: 487 I 487
+
Sbjct: 480 M 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/488 (75%), Positives = 424/488 (86%), Gaps = 4/488 (0%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI LS YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF AY ++DIL KVAAQV D GPCVTY+
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+N+EL +FTEWN+GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEI 239
Query: 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301
T+DIF +KDD GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLK
Sbjct: 240 TSDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 302 EERVEAAKVFKSGGFGV---QSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 358
+ER AAKV + G +++ VDK++LIDDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 359 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 418
KGWDL LGE+ARIWKGGCIIRAVFLDRIKKAY RN +LA+L+VDP+FAKE+V RQ+AWRR
Sbjct: 360 KGWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRR 419
Query: 419 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
VV LAI++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 479 FKIAKQSK 486
K+A++S+
Sbjct: 480 TKLARKSQ 487
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/487 (74%), Positives = 421/487 (86%), Gaps = 4/487 (0%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EG+LP+ G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI S YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY I+DIL KVAAQV D GPCVTY+
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +FTEWN GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEI 239
Query: 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301
T+DIF +KD+ GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLK
Sbjct: 240 TSDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 302 EERVEAAKVFKSGGFGVQ---SNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 358
+ER AAKV + G + ++ +DK++L+DDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 359 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 418
K W+L GELARIWKGGCIIRAVFLDRIKKAY RN DLA+L+VDPEFAKE+V RQ+AWRR
Sbjct: 360 KSWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRR 419
Query: 419 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
VV LA+++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 479 FKIAKQS 485
K+A+++
Sbjct: 480 TKLARKN 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/481 (75%), Positives = 415/481 (86%), Gaps = 4/481 (0%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EGDLPL G P F
Sbjct: 49 SQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPRDF 108
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V SI++PR I++LVKAG+PVD+TI +L+++ME GD IIDGGNEWY+NTERR GL
Sbjct: 109 VLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSNGL 168
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR GPSLMPGG F+AY I+ IL KVAAQV D GPCVTY+ +GGSGN
Sbjct: 169 LYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGGSGN 227
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +F EWNK EL SFL+EITADIF
Sbjct: 228 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIFK 287
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
+KDD DG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLKEER A
Sbjct: 288 VKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENA 347
Query: 308 AKVFKSGGFGVQSNQ---AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 364
AK+ ++ G + N VDK++LIDDVRQALYASKICSYAQGMNL+RAKS E GWDL
Sbjct: 348 AKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDLN 407
Query: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 424
LGELARIWKGGCIIRAVFLD IK+AY RN +LA+L+VDPEFAKE+V RQ+AWRRVV LA+
Sbjct: 408 LGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLAV 467
Query: 425 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 484
++GISTPGM +SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+ GS+HTEW K+A++
Sbjct: 468 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARK 527
Query: 485 S 485
S
Sbjct: 528 S 528
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/483 (70%), Positives = 396/483 (81%), Gaps = 6/483 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G RDP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
YLGMGVSGGEEGAR+GPSLMPGG +AY I DIL K AAQ D G CVT+V GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGI 248
VKM+HNGIEYGDMQLIAEAYDVL+ VG L+N E+ +VF EWN+GEL SFL+EITADIF +
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 249 KDD---KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
D G G LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTIA+SLD R+LSGLK+ERV
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERV 321
Query: 306 EAAKVFKSGGF--GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 363
AA V ++ G G+ VDK+ L+D VRQALYASKICSYAQGMNL+RAKS+EKGW+L
Sbjct: 322 AAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 364 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423
L ELARIWKGGCIIRA FLDRIKKAYDRN +LANL+VD EFA+E+V RQ+AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAK 483
+ +GISTPGMS+SL+YFD+YR RLPANL+QAQRD FGAHTYERID GSFHTEW K+A+
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLAR 501
Query: 484 QSK 486
+S
Sbjct: 502 KSN 504
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 272/476 (57%), Positives = 340/476 (71%), Gaps = 10/476 (2%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPE 65
L + GL GLAVMG+NLALNI GF ++VYNRT K + +RA+ + +P + D
Sbjct: 3 LQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED-- 60
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
FV S+++PR I+++VKAG PVD ++ L ++ GD IIDGGN + +TERR K + L
Sbjct: 61 -FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEAL 119
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
GL ++GMGVSGGEEGA +GPSLMPGG+ AY+ +E I+ +AAQV D GPCVTY+ GGS
Sbjct: 120 GLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQV-DDGPCVTYIGPGGS 178
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG-ELLSFLIEITAD 244
G++VKM+HNGIEYGDMQLIAEAYD+LKSV L EL +VF WNK EL SFLIEITAD
Sbjct: 179 GHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITAD 238
Query: 245 IFGIKDDKGDGY-LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEE 303
IF DD G G LV+ +LD G KGTG+WTV+ A ++ VA PTI ++++AR LS +K E
Sbjct: 239 IFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAE 298
Query: 304 RVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 363
R A+++ + + D+Q ID VR ALY SKICSYAQGM L+ S + L
Sbjct: 299 RQAASEILSGP---ITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGL 355
Query: 364 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423
LGELARIWKGGCIIRA FL++IK+AYD + LANLL+ PEF + I+DRQ AWRRV+ +A
Sbjct: 356 NLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIA 415
Query: 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
GI P S+SL YFDSYRR+RLP NL QAQRDYFGAHTYER D GSFH +WF
Sbjct: 416 AERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQWF 471
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/477 (54%), Positives = 341/477 (71%), Gaps = 17/477 (3%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI +GF +SVYNR++SK +E ++ AK + + G E FV
Sbjct: 5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAG D TI++L ++EK D +IDGGN +Y++T+RR K +AE G+
Sbjct: 62 QSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIH 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ ++ IL ++A+V D PC TY+ G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV-DGEPCTTYIGPDGAGHY 180
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGI 248
VKM+HNGIEYGDMQLI+E+Y +LK V L+ +EL VF EWNKGEL S+LIEITADIF
Sbjct: 181 VKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTK 240
Query: 249 KDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
KD++ LVD +LDK G KGTGKWT Q A DL V P I S+ ARF+S +KEERV+A+
Sbjct: 241 KDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKAS 300
Query: 309 KVFKSGGFGVQSNQAV-----DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 363
G+ S V +K++LI+ VR+AL+ SKICSYAQG ++A S E WDL
Sbjct: 301 --------GLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDL 352
Query: 364 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423
K GE+A I++GGCIIRA FL +IK+AYDR +L NLL+D F + Q A R+V+ LA
Sbjct: 353 KYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLA 412
Query: 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
+ G+ P SS+LAY+DSYR LPANL+QAQRDYFGAHTYER D EG FHTEW K
Sbjct: 413 VAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 264/476 (55%), Positives = 330/476 (69%), Gaps = 13/476 (2%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFV 68
G+ GLAVMG+NLALN+ +GFPI+V+NR+ +K ++ ERA + + E FV
Sbjct: 13 FGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKDIKAAYTV---EEFV 69
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+++PR I+++VKAG PVD I L +E+GD IIDGGN YE+TERR K + GL
Sbjct: 70 QLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLG 129
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV--PDSGPCVTYVSKGGSG 186
++GMGVSGGEEGA GPSLMPGG+ AYK +E IL K+AAQV PD+ CVT++ GG+G
Sbjct: 130 FVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAG 189
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG-ELLSFLIEITADI 245
++VKM+HNGIEYGDMQLIAEAYD+LK+ L+NE+L VF +WN+ EL SFLIEI+ DI
Sbjct: 190 HYVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDI 249
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
F KD + G+L+D +LD G KGTG+WTV +L V PTI ++++AR +S LKEERV
Sbjct: 250 FAKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERV 309
Query: 306 EAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 365
A+ G + D + I VR ALY SK+CSYAQGM LI S E G+D+ L
Sbjct: 310 AASGQLS----GPSKTFSGDVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDVNL 365
Query: 366 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 425
E+ARIWKGGCIIRA FLD+IKKA+ N L NLL+ PEF + I+DRQ WR V+ LA
Sbjct: 366 PEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLANE 425
Query: 426 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS--FHTEWF 479
GI+ P SSSL YFDSYRR LP NL QAQRDYFGAHTYER D FHTEW
Sbjct: 426 MGIAVPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTEWL 481
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 487 | ||||||
| 255579936 | 488 | 6-phosphogluconate dehydrogenase, putati | 0.997 | 0.995 | 0.928 | 0.0 | |
| 225425051 | 485 | PREDICTED: 6-phosphogluconate dehydrogen | 0.987 | 0.991 | 0.935 | 0.0 | |
| 224127314 | 488 | predicted protein [Populus trichocarpa] | 0.997 | 0.995 | 0.903 | 0.0 | |
| 356526585 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.985 | 0.961 | 0.906 | 0.0 | |
| 356526581 | 486 | PREDICTED: 6-phosphogluconate dehydrogen | 0.985 | 0.987 | 0.906 | 0.0 | |
| 224079938 | 488 | predicted protein [Populus trichocarpa] | 0.997 | 0.995 | 0.907 | 0.0 | |
| 356573791 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.973 | 0.889 | 0.0 | |
| 356573793 | 488 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.995 | 0.889 | 0.0 | |
| 356573789 | 533 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.911 | 0.889 | 0.0 | |
| 449447452 | 487 | PREDICTED: 6-phosphogluconate dehydrogen | 0.983 | 0.983 | 0.914 | 0.0 |
| >gi|255579936|ref|XP_002530803.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223529624|gb|EEF31571.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/487 (92%), Positives = 472/487 (96%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EGDLPL+G
Sbjct: 1 MAAPPKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKREGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMA+LGL YLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMADLGLQYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKS+GKL+NEELQ+VF EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSIGKLSNEELQSVFAEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL
Sbjct: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEAAKVFKSGGFG + ++Q +DK+KL+DDVRQALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEAAKVFKSGGFGDILTDQVIDKKKLVDDVRQALYAAKICSYAQGMNLIRAKSIEK 360
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 361 VWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 420
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYER+DMEGSFHTEWF
Sbjct: 421 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERVDMEGSFHTEWF 480
Query: 480 KIAKQSK 486
KIA+Q K
Sbjct: 481 KIARQLK 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425051|ref|XP_002271021.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Vitis vinifera] gi|225425053|ref|XP_002270984.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/482 (93%), Positives = 471/482 (97%), Gaps = 1/482 (0%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
++RIGL+GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LPL+GF DPES
Sbjct: 4 VSRIGLSGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 63
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRVIIMLVKAGAPVD+TIKTLS Y+EKGDCIIDGGNEWYENTERREKAMAELG
Sbjct: 64 FVNSIQKPRVIIMLVKAGAPVDQTIKTLSGYLEKGDCIIDGGNEWYENTERREKAMAELG 123
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 124 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 183
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL+NVF+EWNKGELLSFLIEITADIF
Sbjct: 184 NFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIF 243
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 306
IKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE
Sbjct: 244 SIKDDKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 303
Query: 307 AAKVFKSGGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 365
AAKVFKS GF V S+Q VDK+KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL
Sbjct: 304 AAKVFKSSGFENVLSDQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 363
Query: 366 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 425
GELARIWKGGCIIRA+FLDRIKKAYDRNADLANLLVDPEFAKEIV+RQSAWRRVVCLAIN
Sbjct: 364 GELARIWKGGCIIRAIFLDRIKKAYDRNADLANLLVDPEFAKEIVERQSAWRRVVCLAIN 423
Query: 426 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQS 485
SGISTPGMSSSLAYFDSYRR+RLPANLVQAQRDYFGAHTYERID GSFHTEWFKIA+QS
Sbjct: 424 SGISTPGMSSSLAYFDSYRRDRLPANLVQAQRDYFGAHTYERIDTTGSFHTEWFKIAQQS 483
Query: 486 KI 487
KI
Sbjct: 484 KI 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127314|ref|XP_002329247.1| predicted protein [Populus trichocarpa] gi|222870701|gb|EEF07832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/487 (90%), Positives = 473/487 (97%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV RAKKEGDLPL+G
Sbjct: 1 MAAPPKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVVRAKKEGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRV+IMLVKAG+PVD+TIKTLSAY+EKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVVIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMAELGLLYLGMGVSGGEEGAR+GPS+MPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMAELGLLYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+N+EL++VF+EWNKGELLSFL+E
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNDELRSVFSEWNKGELLSFLVE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL
Sbjct: 241 ITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEAAKVFK+GGFG + ++Q VDK++LIDDVRQALYASKICSYAQGMNLIRAKS+EK
Sbjct: 301 KEERVEAAKVFKAGGFGDILTDQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSMEK 360
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
GWDL+LGELARIWKGGCIIRAVFLDRIKKAYDRN DLANLLVDPEFAKEI++RQSAWRRV
Sbjct: 361 GWDLELGELARIWKGGCIIRAVFLDRIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRV 420
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VCLAINSGISTPGMSSSLAYFD++RRERLPANLVQAQRDYFGAHTYER+D+EGSFHTEWF
Sbjct: 421 VCLAINSGISTPGMSSSLAYFDTFRRERLPANLVQAQRDYFGAHTYERVDVEGSFHTEWF 480
Query: 480 KIAKQSK 486
KIA+Q K
Sbjct: 481 KIARQLK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526585|ref|XP_003531897.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/481 (90%), Positives = 473/481 (98%), Gaps = 1/481 (0%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LP++G+ DPE+F
Sbjct: 19 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 78
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK++AELGL
Sbjct: 79 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 138
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPSLMPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+ KGGSGN
Sbjct: 139 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 198
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+VF+EWNKGELLSFLIEITADIFG
Sbjct: 199 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 258
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI +SLDARFLSGLKEERVEA
Sbjct: 259 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 318
Query: 308 AKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
AKVFKSGG G + ++Q VDK+KL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 319 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 378
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
ELARIWKGGCIIRA+FLDRIK+AYDRN +LANLLVDPEFAKEI+DRQSAWRRVVCLAINS
Sbjct: 379 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 438
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER+D+EGS+HTEWFK+AKQS+
Sbjct: 439 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 498
Query: 487 I 487
I
Sbjct: 499 I 499
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526581|ref|XP_003531895.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Glycine max] gi|356526583|ref|XP_003531896.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/481 (90%), Positives = 473/481 (98%), Gaps = 1/481 (0%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LP++G+ DPE+F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 65
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK++AELGL
Sbjct: 66 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 125
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPSLMPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+ KGGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 185
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+VF+EWNKGELLSFLIEITADIFG
Sbjct: 186 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 245
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI +SLDARFLSGLKEERVEA
Sbjct: 246 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 305
Query: 308 AKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
AKVFKSGG G + ++Q VDK+KL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 306 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 365
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
ELARIWKGGCIIRA+FLDRIK+AYDRN +LANLLVDPEFAKEI+DRQSAWRRVVCLAINS
Sbjct: 366 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 425
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER+D+EGS+HTEWFK+AKQS+
Sbjct: 426 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 485
Query: 487 I 487
I
Sbjct: 486 I 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079938|ref|XP_002305978.1| predicted protein [Populus trichocarpa] gi|222848942|gb|EEE86489.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/487 (90%), Positives = 470/487 (96%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNR+TSKVDETVERAKKEGDLPL+G
Sbjct: 1 MAAPTKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETVERAKKEGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMAELGLLYLGMGVSGGEEGAR+GPS+MPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMAELGLLYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL++VF EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRSVFAEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL
Sbjct: 241 ITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEAAKVFK+GGFG + + Q VDK++LIDDVRQALYASKICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEAAKVFKAGGFGDILTGQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSIEK 360
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
GWDLKLGELARIWKGGCIIRAVFLD IKKAYDRN DLANLLVDPEFAKEI++RQSAWRRV
Sbjct: 361 GWDLKLGELARIWKGGCIIRAVFLDWIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRV 420
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VC+AI+SGISTPGMSSSLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+EGSFHTEWF
Sbjct: 421 VCVAISSGISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTYERVDVEGSFHTEWF 480
Query: 480 KIAKQSK 486
KIA+Q K
Sbjct: 481 KIARQCK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573791|ref|XP_003555039.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/487 (88%), Positives = 468/487 (96%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 12 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 71
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 72 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 131
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 132 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 191
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 192 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 251
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI +SLDARFLSGL
Sbjct: 252 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 311
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 312 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 371
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 372 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 431
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 432 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 491
Query: 480 KIAKQSK 486
K+AKQS+
Sbjct: 492 KLAKQSR 498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573793|ref|XP_003555040.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/487 (88%), Positives = 468/487 (96%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 1 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 61 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI +SLDARFLSGL
Sbjct: 241 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 300
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 360
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 361 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 420
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 421 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 480
Query: 480 KIAKQSK 486
K+AKQS+
Sbjct: 481 KLAKQSR 487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573789|ref|XP_003555038.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/487 (88%), Positives = 468/487 (96%), Gaps = 1/487 (0%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 46 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 105
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 106 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 165
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 166 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 225
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 226 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 285
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI +SLDARFLSGL
Sbjct: 286 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 345
Query: 301 KEERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 359
KEERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 346 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 405
Query: 360 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 419
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 406 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 465
Query: 420 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 466 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 525
Query: 480 KIAKQSK 486
K+AKQS+
Sbjct: 526 KLAKQSR 532
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447452|ref|XP_004141482.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] gi|449529072|ref|XP_004171525.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/479 (91%), Positives = 454/479 (94%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK EG+LPL+GF DPESF
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKAEGNLPLYGFHDPESF 67
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V SIQKPRVIIMLVKAGAPVD+TIKTLSAY+EKGDCIIDGGNEWYENTERREKAM ELGL
Sbjct: 68 VQSIQKPRVIIMLVKAGAPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMGELGL 127
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPSLMPGGS+EA+K IEDIL+KVAAQVPDSGPCVTY+ KGGSGN
Sbjct: 128 LYLGMGVSGGEEGARNGPSLMPGGSYEAFKNIEDILVKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEEL VF+EWNKGELLSFL+EITADIF
Sbjct: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHQVFSEWNKGELLSFLVEITADIFS 247
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
IKDDK DGYLVDKVLDKTGMKGTGKWTVQQAADLSVA PTIASSLDARFLSGLKEERVEA
Sbjct: 248 IKDDKADGYLVDKVLDKTGMKGTGKWTVQQAADLSVAVPTIASSLDARFLSGLKEERVEA 307
Query: 308 AKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 367
AKVF SG V Q VDK KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE
Sbjct: 308 AKVFGSGLNDVLVPQEVDKAKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 367
Query: 368 LARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSG 427
LARIWKGGCIIRA+FLDRIK+AYDR DLANLLVD EFAKEI++RQSAWRRVVCLAINSG
Sbjct: 368 LARIWKGGCIIRAIFLDRIKRAYDRKPDLANLLVDTEFAKEIIERQSAWRRVVCLAINSG 427
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYER DMEGSFHTEWFKIAKQ K
Sbjct: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDMEGSFHTEWFKIAKQLK 486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 487 | ||||||
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.989 | 0.991 | 0.861 | 1.1e-224 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.981 | 0.995 | 0.846 | 3.8e-220 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.993 | 0.993 | 0.733 | 5.3e-191 | |
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.991 | 0.991 | 0.733 | 2.3e-190 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.979 | 0.888 | 0.733 | 4.9e-188 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.977 | 0.937 | 0.692 | 8.3e-177 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.954 | 0.993 | 0.518 | 2.6e-125 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.954 | 0.993 | 0.518 | 2.6e-125 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.950 | 0.987 | 0.507 | 3.4e-125 | |
| UNIPROTKB|P14062 | 468 | gnd "6-phosphogluconate dehydr | 0.950 | 0.989 | 0.520 | 2.1e-123 |
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2169 (768.6 bits), Expect = 1.1e-224, P = 1.1e-224
Identities = 416/483 (86%), Positives = 454/483 (93%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPE 65
Q TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF DPE
Sbjct: 4 QPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPE 63
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
SFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCI+DGGNEWYENTERREKA+AE
Sbjct: 64 SFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAEN 123
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
G LYLGMGVSGGEEGAR+GPS+MPGGS+EAYK IEDI+LKVAAQV DSGPCVTY+ KGGS
Sbjct: 124 GFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGS 183
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXX 245
GNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL +VF++WNKGEL SFL+EITA
Sbjct: 184 GNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADI 243
Query: 246 XXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTI SSLDARFLSGLK+ERV
Sbjct: 244 FGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERV 303
Query: 306 EAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 364
+AAKVFK+GGFG + ++Q VDK++L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LK
Sbjct: 304 QAAKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 424
LGELARIWKGGCIIRA+FLDRIK+AYDRNA+LANLLVDPEFAKEI++RQSAWRRVVCLAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 425 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 484
NSGISTPGMS+SLAYFDSYRRERLPANLVQAQRDYFGAHTYER D+EGSFHTEWFKIA+Q
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQ 483
Query: 485 SKI 487
SKI
Sbjct: 484 SKI 486
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2126 (753.4 bits), Expect = 3.8e-220, P = 3.8e-220
Identities = 407/481 (84%), Positives = 447/481 (92%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
+TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EG+LP++GF DP S
Sbjct: 3 VTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPAS 62
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRV+IMLVKAGAPVD+TI TL+A++E+GDCIIDGGNEWYENTERREKAM E G
Sbjct: 63 FVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERG 122
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 123 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXX 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVGKLTN ELQ VF+EWNKGELLSFLIEITA
Sbjct: 183 NFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADIF 242
Query: 247 XXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 306
+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD+RFLSGLK+ERVE
Sbjct: 243 SIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERVE 302
Query: 307 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
AAKVF+ G F SN VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L LG
Sbjct: 303 AAKVFQ-GDFS--SNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLG 359
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
ELARIWKGGCIIRA+FLDRIKKAYDRN+DLANLLVDPEFA+EI+DRQ+AWRRVVCLAIN+
Sbjct: 360 ELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINN 419
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 486
G+STPGMS+SLAYFDSYRR+RLPANLVQAQRDYFGAHTYER+DM GSFHTEWFKIA+ +K
Sbjct: 420 GVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK 479
Query: 487 I 487
+
Sbjct: 480 M 480
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1851 (656.6 bits), Expect = 5.3e-191, P = 5.3e-191
Identities = 358/488 (73%), Positives = 414/488 (84%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI LS YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF AY ++DIL KVAAQV D GPCVTY+
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+N+EL +FTEWN+GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEI 239
Query: 242 TAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301
T+ LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLK
Sbjct: 240 TSDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 302 EERVEAAKVFKSGGFGVQ---SNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 358
+ER AAKV + G +++ VDK++LIDDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 359 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 418
KGWDL LGE+ARIWKGGCIIRAVFLDRIKKAY RN +LA+L+VDP+FAKE+V RQ+AWRR
Sbjct: 360 KGWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRR 419
Query: 419 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
VV LAI++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 479 FKIAKQSK 486
K+A++S+
Sbjct: 480 TKLARKSQ 487
|
|
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
Identities = 357/487 (73%), Positives = 410/487 (84%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EG+LP+ G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI S YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY I+DIL KVAAQV D GPCVTY+
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +FTEWN GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEI 239
Query: 242 TAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301
T+ LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLK
Sbjct: 240 TSDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 302 EERVEAAKVFKSGGFGVQSNQA---VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 358
+ER AAKV + G + A +DK++L+DDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 359 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 418
K W+L GELARIWKGGCIIRAVFLDRIKKAY RN DLA+L+VDPEFAKE+V RQ+AWRR
Sbjct: 360 KSWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRR 419
Query: 419 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
VV LA+++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 479 FKIAKQS 485
K+A+++
Sbjct: 480 TKLARKN 486
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1823 (646.8 bits), Expect = 4.9e-188, P = 4.9e-188
Identities = 353/481 (73%), Positives = 406/481 (84%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EGDLPL G P F
Sbjct: 49 SQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPRDF 108
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V SI++PR I++LVKAG+PVD+TI +L+++ME GD IIDGGNEWY+NTERR GL
Sbjct: 109 VLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSNGL 168
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR GPSLMPGG F+AY I+ IL KVAAQV D GPCVTY+ +GGSGN
Sbjct: 169 LYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGGSGN 227
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXX 247
FVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +F EWNK EL SFL+EITA
Sbjct: 228 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIFK 287
Query: 248 XXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLD R+LSGLKEER A
Sbjct: 288 VKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENA 347
Query: 308 AKVFKSGGFGVQSNQ---AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 364
AK+ ++ G + N VDK++LIDDVRQALYASKICSYAQGMNL+RAKS E GWDL
Sbjct: 348 AKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDLN 407
Query: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 424
LGELARIWKGGCIIRAVFLD IK+AY RN +LA+L+VDPEFAKE+V RQ+AWRRVV LA+
Sbjct: 408 LGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLAV 467
Query: 425 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 484
++GISTPGM +SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+ GS+HTEW K+A++
Sbjct: 468 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARK 527
Query: 485 S 485
S
Sbjct: 528 S 528
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1717 (609.5 bits), Expect = 8.3e-177, P = 8.3e-177
Identities = 334/482 (69%), Positives = 389/482 (80%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G RDP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
YLGMGVSGGEEGAR+GPSLMPGG +AY I DIL K AAQ D G CVT+V GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAYDVL+ VG L+N E+ +VF EWN+GEL SFL+EITA
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 249 XX---XXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTIA+SLD R+LSGLK+ERV
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERV 321
Query: 306 EAAKVFKSGGF--GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 363
AA V ++ G G+ VDK+ L+D VRQALYASKICSYAQGMNL+RAKS+EKGW+L
Sbjct: 322 AAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 364 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423
L ELARIWKGGCIIRA FLDRIKKAYDRN +LANL+VD EFA+E+V RQ+AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAK 483
+ +GISTPGMS+SL+YFD+YR RLPANL+QAQRD FGAHTYERID GSFHTEW K+A+
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLAR 501
Query: 484 QS 485
+S
Sbjct: 502 KS 503
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
Identities = 243/469 (51%), Positives = 318/469 (67%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E +L ++G++ E +N
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++KPR +I+L+KAG VDE I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L MGVSGGE GAR+G S MPGGS AY +++IL K +AQV +S PCVTY+ G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI+E+Y ++K + K N++L VF +WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
YLVD +LD G KGTGKWT+ +A + + PT+ ++LDAR +S KE R +A
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
F + N+ D +D+ ALY KI SY QG+ L++ S E W L LGE+A
Sbjct: 302 NFNKDNILIDPNE--DLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEIA 359
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
RIW+GGCIIRAVFLDRI AY N L L +D EF+ +I ++ + R++V +A I
Sbjct: 360 RIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSIP 419
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
P S+SLAYF + LP NLVQAQRDYFG+HTY R D EG++HT W
Sbjct: 420 IPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
Identities = 243/469 (51%), Positives = 318/469 (67%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E +L ++G++ E +N
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++KPR +I+L+KAG VDE I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L MGVSGGE GAR+G S MPGGS AY +++IL K +AQV +S PCVTY+ G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI+E+Y ++K + K N++L VF +WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
YLVD +LD G KGTGKWT+ +A + + PT+ ++LDAR +S KE R +A
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
F + N+ D +D+ ALY KI SY QG+ L++ S E W L LGE+A
Sbjct: 302 NFNKDNILIDPNE--DLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEIA 359
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
RIW+GGCIIRAVFLDRI AY N L L +D EF+ +I ++ + R++V +A I
Sbjct: 360 RIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSIP 419
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
P S+SLAYF + LP NLVQAQRDYFG+HTY R D EG++HT W
Sbjct: 420 IPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 239/471 (50%), Positives = 328/471 (69%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+ VMG++LALN KG+ +++Y+ + KVDET+E + + L G E FV
Sbjct: 5 QIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEENRGKN---LVGTHIVEEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
NS++ PR I+++V AG D+ I +L +++KGD +IDGGN ++ +T RR K +AE G+
Sbjct: 62 NSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGIN 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG +AY+ ++D+L ++A+V ++ PC +Y+ G+G++
Sbjct: 122 FIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKV-NNEPCCSYIGPNGAGHY 180
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLI EAY LK LT EE +F EWNKGEL S+LIEITA
Sbjct: 181 VKMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITADIFKK 240
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
LVD +LD G KGTGKWT Q A DL ++ P I S+ AR +S LKEERV A+
Sbjct: 241 KDEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEERVNAS 300
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G ++ V+K +LI+ VRQALY SKICSYAQG ++A S E W+L G +
Sbjct: 301 KVLS--GPKDKTAIGVEKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNLDFGSI 358
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 427
+ +W+GGCIIRA FL IK+AY+ N DL NLL+DP F KEIV+ Q R+++ +A+ G
Sbjct: 359 SMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISMAVQQG 417
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
I P S++++Y+DSYR +LPANL+QAQRDYFGAHTY+R+D EG+FHT+W
Sbjct: 418 IPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| UNIPROTKB|P14062 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (taxid:99287)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 246/473 (52%), Positives = 321/473 (67%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +SV+NR+ K +E + A+ G L + + FV
Sbjct: 5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y+EKGD IIDGGN ++++T RR + ++ G
Sbjct: 62 ESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFN 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG +AY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK L+NEEL N FTEWN GEL S+LI+IT
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELANTFTEWNNGELSSYLIDITKDIFTK 241
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK +RV A+
Sbjct: 242 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKAQRVAAS 300
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G ++ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 301 KVLS----GPKAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYHWDLNYGEI 356
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 427
A+I++ GCIIRA FL +I AY NAD+ANLL+ P F K+I D Q A R VV A+ +G
Sbjct: 357 AKIFRAGCIIRAQFLQKITDAYAENADIANLLLAPYF-KKIADEYQQALRDVVAYAVQNG 415
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
I P S+++AY+DSYR LPANL+QAQRDYFGAHTY+R D EG FHTEW +
Sbjct: 416 IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9PKX7 | 6PGD_CHLMU | 1, ., 1, ., 1, ., 4, 4 | 0.4594 | 0.9671 | 0.9832 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.5095 | 0.9507 | 0.9809 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4906 | 0.9486 | 0.9371 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5165 | 0.9137 | 1.0 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5243 | 0.9117 | 0.9977 | yes | no |
| P41583 | 6PGD_CITFR | 1, ., 1, ., 1, ., 4, 4 | 0.5165 | 0.9096 | 0.9955 | N/A | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.8648 | 0.9815 | 0.9958 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.5010 | 0.9548 | 0.9451 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.4989 | 0.9486 | 0.9545 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4798 | 0.9466 | 0.9850 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9507 | 0.9585 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7520 | 0.9938 | 0.9938 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5244 | 0.9507 | 0.9893 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8898 | 0.9815 | 0.9896 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7505 | 0.9794 | 0.8882 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5212 | 0.9486 | 0.9871 | yes | no |
| O84066 | 6PGD_CHLTR | 1, ., 1, ., 1, ., 4, 4 | 0.4585 | 0.9733 | 0.9875 | yes | no |
| P41575 | 6PGD_RAOPL | 1, ., 1, ., 1, ., 4, 4 | 0.5121 | 0.9096 | 0.9955 | N/A | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5546 | 0.9507 | 0.9605 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.5084 | 0.9527 | 0.9914 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5201 | 0.9507 | 0.9893 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5199 | 0.9117 | 0.9977 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7474 | 0.9917 | 0.9917 | no | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5176 | 0.9117 | 0.9977 | N/A | no |
| Q89AX5 | 6PGD_BUCBP | 1, ., 1, ., 1, ., 4, 4 | 0.4512 | 0.9486 | 0.9871 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5450 | 0.9445 | 0.9808 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8861 | 0.9897 | 0.9917 | yes | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5187 | 0.9096 | 0.9955 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5169 | 0.9527 | 0.9914 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5714 | 0.9568 | 0.9893 | yes | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4713 | 0.9527 | 0.9809 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5180 | 0.9507 | 0.9809 | yes | no |
| P41572 | 6PGD_DROME | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9445 | 0.9563 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5165 | 0.9137 | 1.0 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5143 | 0.9137 | 1.0 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5254 | 0.9527 | 0.9914 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7039 | 0.9794 | 0.9389 | no | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5212 | 0.9486 | 0.9871 | yes | no |
| O13287 | 6PGD_CANAX | 1, ., 1, ., 1, ., 4, 4 | 0.5164 | 0.9301 | 0.8762 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4734 | 0.9507 | 0.9566 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.5127 | 0.9527 | 0.9914 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 487 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 0.0 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 9e-76 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 7e-64 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 4e-57 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-56 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 7e-55 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 6e-19 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-09 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-09 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-06 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 6e-06 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 2e-05 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 3e-05 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 4e-05 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 1e-04 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1029 bits (2663), Expect = 0.0
Identities = 408/483 (84%), Positives = 444/483 (91%), Gaps = 3/483 (0%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF+DPE
Sbjct: 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPED 65
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FV SIQKPR +I+LVKAGAPVD+TIK LS YME GDCIIDGGNEWYENTERR K AE G
Sbjct: 66 FVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG 125
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYK IEDIL KVAAQV D GPCVTY+ GG+G
Sbjct: 126 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQV-DDGPCVTYIGPGGAG 184
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVG L+NEEL VF EWNKGEL SFLIEITADIF
Sbjct: 185 NFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIF 244
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 306
+KDDKGDGYLVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTIA+SLDAR+LSGLKEERV
Sbjct: 245 SVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304
Query: 307 AAKVFKSGGF--GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 364
AAKVFK G + ++ VDK++LIDDVRQALYASKICSYAQGMNLIRAKS+EKGW+L
Sbjct: 305 AAKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLN 364
Query: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 424
LGELARIWKGGCIIRAVFLDRIKKAYDRN DLA+LLVDPEFAKE+V+RQ+AWRRVV LAI
Sbjct: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAI 424
Query: 425 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 484
N+GISTPGMS+SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D GSFHTEW K+A++
Sbjct: 425 NAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLARK 484
Query: 485 SKI 487
SKI
Sbjct: 485 SKI 487
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 796 bits (2058), Expect = 0.0
Identities = 273/461 (59%), Positives = 333/461 (72%), Gaps = 6/461 (1%)
Query: 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77
MG+NLALNIA G+ ++VYNRT K DE + K + E FV S++KPR I
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137
+++VKAGAPVD I+ L +EKGD IIDGGN Y++T RREK +AE G+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 138 EEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE 197
EEGA HGPS+MPGG EAY+ + IL K+AA+V D PCVTY+ G+G++VKM+HNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 198 YGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYL 257
YGDMQLIAEAYD+LK L+ EE+ +VF EWNKGEL S+LIEITADI KD++ L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 258 VDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFG 317
VD +LDK G KGTGKWT Q A DL V I ++ AR+LS LK++RV A+KV G
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLS----G 294
Query: 318 VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCI 377
+ DK + I+DVRQALYASKI SYAQG L+RA S E GWDL LGE+ARIW+GGCI
Sbjct: 295 PAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCI 354
Query: 378 IRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 437
IRA FL +I AY+ N DLANLL+DP F + + Q A RRVV LA+ +GI P SS+L
Sbjct: 355 IRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSAL 414
Query: 438 AYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
+Y+DSYR RLPANL+QAQRDYFGAHTYER D EG FHTEW
Sbjct: 415 SYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEW 455
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 740 bits (1913), Expect = 0.0
Identities = 275/469 (58%), Positives = 339/469 (72%), Gaps = 7/469 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GLAVMG NLALNIA+ G+ ++VYNRTT K DE + K ++ E FV
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSIEEFVA 63
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++VKAG PVD I+ L +EKGD IIDGGN Y++T RR K ++E G+L+
Sbjct: 64 SLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILF 123
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+GMGVSGGEEGARHGPS+MPGG EAY+ + IL K+AA+V D PC T++ G+G+FV
Sbjct: 124 VGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKV-DGEPCCTWIGPDGAGHFV 182
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLIAEAYD+LK L+ EE+ VF EWNKGEL S+LIEITADI K
Sbjct: 183 KMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKK 242
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
D++G LVDK+LDK G KGTGKWTV A DL V I ++ AR+LS LK+ERV A+K
Sbjct: 243 DEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASK 302
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
V G DK++ I+DVRQALYASKI SYAQG L+RA S E GWDL LGE+A
Sbjct: 303 VLAGPKLGE----PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIA 358
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
IW+GGCIIR+ FLD+I A+D N +LANLL+ P F + + Q + RRVV A+ +GI
Sbjct: 359 LIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIP 418
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
P SS+L+Y+DSYR RLPANL+QAQRDYFGAHTYER D EG FHT W
Sbjct: 419 VPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 467
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 690 bits (1783), Expect = 0.0
Identities = 279/469 (59%), Positives = 351/469 (74%), Gaps = 3/469 (0%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNLALNIA +GF ISVYNRT K +E V++AK+ + G+ E VN
Sbjct: 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR +I+L+KAG VDETI L +EKGD IIDGGNEWY NTERR K E G+LY
Sbjct: 63 SLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
LGMGVSGGEEGAR+GPSLMPGG+ EAY +++DIL K +A+V DS PCVTYV G SG++V
Sbjct: 123 LGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDS-PCVTYVGPGSSGHYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLI+E+Y ++K + ++NEEL VF +WN+G L S+LIEITA I K
Sbjct: 182 KMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKK 241
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
DD G+ +LVDK+LD G KGTGKWTVQ+A + + PT+A+S+DAR +S LKEER +A+
Sbjct: 242 DDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASS 301
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
+G + DK+ IDD++ ALY SKI SY QG LI+ S E GW+L LGE+A
Sbjct: 302 HL-AGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIA 360
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
RIW+GGCIIRAVFLDRIK A+ +N L L +DP+F E+ ++Q +WR+VV +A +GI
Sbjct: 361 RIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIP 420
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
TP S+SLAY+ YR + LPANLVQAQRDYFGAHTY+R+D G+FHT W
Sbjct: 421 TPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNW 469
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 683 bits (1764), Expect = 0.0
Identities = 275/471 (58%), Positives = 331/471 (70%), Gaps = 9/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE + K + G E FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKI--VGAYSIEEFVQ 59
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S+++PR I+++VKAGAPVD I L +EKGD IIDGGN Y +TERR K + G+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR GPS+MPGGS EA+ + I K+AA+V D PC T++ G+G++V
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKV-DGEPCCTWIGPDGAGHYV 178
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLI EAYD+LK L+NEE+ VFTEWN GEL S+LIEITADI K
Sbjct: 179 KMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKK 238
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
D+ G LVDK+LD G KGTGKWT A DL V I S+ AR+LS LKEERV A+K
Sbjct: 239 DEDG-KPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASK 297
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
V SG + AVDK++ I+DVRQALYASKI SYAQG L+R S E GWDL LGE+A
Sbjct: 298 VL-SGPLAPEP--AVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIA 354
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
IW+GGCIIR+ FLD+I KA+ N DLANLL+ P F + D QS WRRVV LAI GI
Sbjct: 355 LIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIP 414
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS--FHTEW 478
P S++L+++D YR RLPANL+QAQRDYFGAHTYER D FHT W
Sbjct: 415 VPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNW 465
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 534 bits (1377), Expect = 0.0
Identities = 189/294 (64%), Positives = 226/294 (76%), Gaps = 4/294 (1%)
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245
G++VKM+HNGIEYGDMQLIAEAYD+LK+V L+N+E+ +VF EWNKGEL S+LIEITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERV 305
KD+ G LVDK+LDK G KGTGKWTVQ A +L V P I ++ AR+LS LKEERV
Sbjct: 61 LRKKDEDG-KPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 306 EAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 365
A+KV + DK + I+DVRQALYASKI SYAQG L+RA S E GW+L L
Sbjct: 120 AASKVLSGPK---AAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNL 176
Query: 366 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 425
GE+ARIW+GGCIIRA FLD+IK AY++N DL NLL+DP F KEI + Q +WRRVV +A+
Sbjct: 177 GEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVE 236
Query: 426 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
+GI P SS+L+Y+DSYR ERLPANL+QAQRDYFGAHTYER D EG FHT W
Sbjct: 237 AGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 9e-76
Identities = 106/295 (35%), Positives = 159/295 (53%), Gaps = 27/295 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G+ GL MG N+A + G + Y+R E VE +EG G E V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRN----PEAVEALAEEG---ATGADSLEELV 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ PRV+ ++V AG D TI L+ + GD +IDGGN +Y++ RR + +AE G+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDS----GPCVTYVSKGG 184
++ +G SGG G G LM GG EA + +E I +A + D GP G
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPV-------G 167
Query: 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITA 243
+G+FVKM+HNGIEYG MQ AE +++L++ + +L V W +G ++ S+L+++TA
Sbjct: 168 AGHFVKMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTA 225
Query: 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298
D +D + V D G G+WTV++A DL+V AP IA++L RF S
Sbjct: 226 DAL--AEDPKLDEISGYVED----SGEGRWTVEEAIDLAVPAPVIAAALFMRFRS 274
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 7e-64
Identities = 109/290 (37%), Positives = 157/290 (54%), Gaps = 20/290 (6%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GL MG NL + + G + Y+ VE K EG + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ----TAVEELKDEGATGA---ASLDELVA 55
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+ PR++ ++V AG D I L+ + GD +IDGGN Y+++ RR K +AE G+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L +G SGG GA G LM GG EA + +E I +A + G Y GSG+FV
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA--PGEDG--YLYCGPSGSGHFV 171
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFGI 248
KM+HNGIEYG MQ IAE +++LK+ + +L+ V WN G ++ S+L+++TA+ F
Sbjct: 172 KMVHNGIEYGMMQAIAEGFELLKNSP--FDYDLEAVAEVWNHGSVIRSWLLDLTAEAF-- 227
Query: 249 KDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298
K D L D++ + G G+WTV++A DL V AP IA +L RF S
Sbjct: 228 ---KKDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRS 273
|
Length = 300 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 4e-57
Identities = 70/177 (39%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG GL VMG +ALN+ + G+ ++VYNRT KV+E V G P F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
V S V+I +V AGA VD I L ++ GD IIDG ++T RR K +AE
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
G+ +L VSGGEEGA G S+M GG EA++ ++ IL + A CVT+
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA-------CVTHY 160
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 2e-56
Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 28/295 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++GL GL MG N+A + E G + Y+ E V+ A K G E V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ----EAVDVAGKLGITARHSL---EELV 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ ++ PR I ++V AG + IK L + GD ++DGGN Y++ RR + +AE G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
Y+ G SGG G R+G LM GG E Y +E + +A P+ GP + GSG+F
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA---PE-GPGYVHAGPVGSGHF 170
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFG 247
+KM+HNGIEYG MQ AE ++L + +++V W G ++ S+L+++T
Sbjct: 171 LKMVHNGIEYGMMQAYAEGLELLDKSDFDFD--VEDVARLWRNGSVIRSWLLDLTVKAL- 227
Query: 248 IKDD----KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298
+D GY+ D G G+WTV++A +L+VAAP IA+SL RF S
Sbjct: 228 -AEDPKLAGIKGYVND--------SGEGRWTVEEAIELAVAAPVIAASLFMRFAS 273
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 7e-55
Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++GL GL MG N+ +A++G Y+ V+ K++ + R+
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD----AVKAMKEDRTTGVANLRE---LS 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ PRV+ ++V G VD ++ L+ +EKGD +IDGGN +Y+++ RR K + E G+
Sbjct: 55 QRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
L G SGG G G M GG EA+ E + VA + G Y GSG+F
Sbjct: 114 LLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA--PEEQG--YLYCGPCGSGHF 169
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFG 247
VKM+HNGIEYG M IAE +++L++ + ++ V W +G ++ S+L+++TA F
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAF- 226
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298
+ D + + + G G+WTV A DL V AP IA+SL +RF S
Sbjct: 227 --RESPD---LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFAS 272
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 6e-19
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 20/205 (9%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I GL +MG +A N+ + G ++VYNRT K E G P
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK---AAELLAAAG---ATVAASPAEA 54
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
VI ML A V + L ++ G +ID E A+A
Sbjct: 55 AAE--ADVVITMLP-DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA 111
Query: 125 LGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
GL +L VSGG GA G ++M GG EA++ + +L + + +V
Sbjct: 112 KGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN-------IVHVGPV 164
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAY 208
G+G K+ +N + G++ +AEA
Sbjct: 165 GAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 27/214 (12%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +++N+A+ G+ + V DE L G E+
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE----------LLAAGAVTAETAR 50
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEWYENTERREKAMAEL 125
++ VI +V V+E + +E G ++D + ++R KA+ E
Sbjct: 51 QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK 110
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G+ YL VSGGE GA G S+M GG F+ K + + L G + V
Sbjct: 111 GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL----------GKNIVLVG 160
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215
G G K+ + I +++ ++EA G
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAG 194
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG+ ++ N+ + G+ + VY+R V E + + +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----------STAK 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEWYENTERRE--KAMA 123
++ VII ++ V E + +E G +ID + RE A+
Sbjct: 54 AVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSS--IAPLASREIAAALK 111
Query: 124 ELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK 182
G+ L VSGGE A G S+M GG + D++ +A V +
Sbjct: 112 AKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS-------VVHTGD 164
Query: 183 GGSGNFVKM 191
G+GN K+
Sbjct: 165 IGAGNVTKL 173
|
Length = 296 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +A+N+A G + V T V + +L G E+
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVAD---------ELLSLGAVSVETAR 50
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I ++V V+E + + KG I+D + T+R + + EL
Sbjct: 51 QVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNEL 110
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G YL VSGGE GAR G S+M GG FE K + ++L G +T V
Sbjct: 111 GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL----------GKNITLVG 160
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEA 207
G G K+ + I +++ ++EA
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 344 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403
+ A+G L++ +D L +A +W G +IR+ LD +A+ ++ DL +
Sbjct: 185 AIAEGFELLKNSP----FDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPAN-LVQAQRDYFGA 462
V R V A++ G+ P ++ +L R++ A ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 463 HTYERID 469
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 344 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403
+YA+G L+ A +DL L +A +W+ G +IR+ LD A + L +
Sbjct: 186 AYAEGFELLEAS----RFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEI---- 237
Query: 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPAN-LVQAQRDYFG 461
V+ R V AI+ + P ++++L F S R+E A+ +V A R+ FG
Sbjct: 238 ---SGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS-RQEDSFADKVVAALRNGFG 293
Query: 462 AHTYERID 469
H ++ +
Sbjct: 294 GHAVKKKE 301
|
Length = 301 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 344 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403
+ A+G ++R +D + E+AR+W+ G +IR+ LD A+ + DLA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPANLVQAQRDYFGA 462
V R V AI+ G+ P +++SL + F S + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 463 HTYER 467
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 21/199 (10%)
Query: 14 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQK 73
GL MG +A N+ + G P+ V++ V+E V + P + +
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPA----------EAAEG 52
Query: 74 PRVIIMLVKAGAPVDETIKT---LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130
+I ++ AG V + + KG +ID ++ + + A G +++
Sbjct: 53 ADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFM 112
Query: 131 GMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
VSGG GAR G + M GG E + E +L + + + G+G
Sbjct: 113 DAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN-------IVHCGDHGAGQAA 165
Query: 190 KMIHNGIEYGDMQLIAEAY 208
K+ +N + M AEA
Sbjct: 166 KICNNMLLGISMIGTAEAM 184
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 344 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403
+YA+G+ L+ +D + ++AR+W+ G +IR+ LD KA + LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPANLVQAQRDYFGA 462
K V+ R V AI ++ P +++SL F S + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 463 HTYER 467
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 487 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.98 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.94 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.93 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.92 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.92 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.9 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.89 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.87 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.85 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.85 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.85 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.84 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.83 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.81 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.81 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.78 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.78 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.77 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.76 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.75 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.74 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.71 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.69 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.68 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.68 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.67 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.67 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.67 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.67 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.66 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.65 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.65 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.63 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.63 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.63 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.63 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.62 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.6 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.6 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.59 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.58 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.57 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.55 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.51 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.5 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.5 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.49 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.47 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.44 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.43 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.43 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.41 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.39 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.38 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.37 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.37 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.37 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.36 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.35 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.35 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.35 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.33 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.33 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.32 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.31 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.31 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.31 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.3 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.17 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.13 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.13 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.12 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.11 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.1 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.06 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.02 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.02 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.99 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.99 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.98 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.98 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.96 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.94 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.92 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.91 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.87 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.86 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.83 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.82 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.8 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.79 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.77 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.77 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.75 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.75 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.72 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.7 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.7 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.69 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.68 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.67 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.67 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.63 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.63 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.63 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.59 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.51 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.48 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.47 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.44 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.43 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.41 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.39 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.38 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.34 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.33 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.31 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.3 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.24 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.23 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.17 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.12 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.11 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.11 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.1 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.07 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.06 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.06 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.06 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.05 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.05 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.98 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.97 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.96 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.96 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.96 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.95 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.95 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.94 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.93 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.92 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.91 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.91 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.9 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.89 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.89 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.87 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.85 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.85 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.84 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.84 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.81 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.8 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.79 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.78 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.78 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.77 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.76 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.76 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.76 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.76 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.74 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.73 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.73 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.73 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.72 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.71 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.69 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.69 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.69 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.69 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.65 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.62 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.59 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.58 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.58 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.58 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.58 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 97.56 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.54 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.53 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.53 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.51 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.48 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.48 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.48 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.46 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.45 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.42 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.41 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.36 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.35 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.34 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.28 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.25 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.25 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.23 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.23 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.22 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.2 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.19 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.18 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.17 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.17 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.17 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.16 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.16 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.14 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.13 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.12 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.11 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.08 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.06 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.05 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.04 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.03 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.02 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.92 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.9 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.9 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.89 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.87 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.84 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.84 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.83 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.81 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.8 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.8 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.78 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.78 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.76 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.73 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.73 | |
| PLN00106 | 323 | malate dehydrogenase | 96.72 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.71 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.69 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.69 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.69 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.68 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.66 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.65 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.63 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.63 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.61 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.6 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.6 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.57 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.52 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.49 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.47 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.46 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.46 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.45 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.45 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.44 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.43 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.42 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.42 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.42 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.39 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.38 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.37 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.36 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.35 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.32 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.29 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.29 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.28 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.25 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.23 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.22 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.22 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.2 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.2 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.18 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.17 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.16 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.13 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.11 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.08 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.05 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.02 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.01 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 96.0 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.0 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.99 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.96 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.96 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.93 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.92 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.92 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.91 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.91 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.91 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.9 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.9 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.88 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.87 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.86 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.85 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.84 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.82 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.79 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.77 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.77 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.75 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.75 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.67 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.64 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.62 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.62 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 95.62 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.61 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.61 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.58 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.57 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.54 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.53 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.51 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.5 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.49 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.49 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.48 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.47 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.47 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.45 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.42 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.42 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.4 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.38 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.35 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 95.34 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.3 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.29 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.26 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.26 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.25 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.23 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.21 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.2 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.18 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.15 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.11 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.07 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.07 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.06 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.05 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.01 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.0 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.99 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.97 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.97 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.95 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.92 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.89 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.89 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.89 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.89 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.85 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 94.84 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.83 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.82 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.79 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 94.78 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 94.74 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.73 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.73 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.71 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.71 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.69 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.69 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.67 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.65 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.62 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.59 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.58 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.58 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 94.57 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.56 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.54 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 94.51 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.51 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.5 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.49 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.48 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.48 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.46 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.44 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.38 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.37 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.33 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.33 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.33 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.29 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.29 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.28 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.27 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.27 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.25 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.25 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.24 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.22 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.2 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.17 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.15 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 94.12 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.09 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.08 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.06 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.04 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.02 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.02 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.97 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.96 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.95 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 93.95 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 93.95 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 93.94 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.93 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 93.93 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.91 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 93.91 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.9 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.88 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 93.86 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.84 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.83 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 93.76 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.68 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 93.68 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.68 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 93.63 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.62 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.62 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 93.61 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 93.59 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 93.58 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.57 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.56 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.55 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 93.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.54 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.52 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 93.52 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.5 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.49 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.49 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 93.49 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.43 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 93.42 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 93.42 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-128 Score=934.94 Aligned_cols=469 Identities=59% Similarity=0.957 Sum_probs=450.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+.||+||+|.||++||+|++++||+|.+|||++++++++.+..... .++.++.|++|+++.|++|+.|+++|+.+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~--k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKG--KNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccC--CCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 35799999999999999999999999999999999999998765432 2688999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.++++|+|+|.+|+||||.+|+++.+|.++.+.+.++|++|++++||||+++|+.||++|+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l 246 (487)
+++. +++|||.|+|+.|+||+||||||+|+|+.||+++|+|.+++...|++.+++.++|.+||++.++||+++|+.+++
T Consensus 161 aAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 161 AAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred Hhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 9996 699999999999999999999999999999999999999999777999999999999999999999999999999
Q ss_pred ccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccch
Q 011394 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDK 326 (487)
Q Consensus 247 ~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 326 (487)
+.+|..++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|+.|++|+.+++.|++|... .+.+.
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~----~~~dk 315 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG----EPGDK 315 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC----CCCCH
Confidence 98876556689999999999999999999999999999999999999999999999999999999888541 25688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHH
Q 011394 327 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 406 (487)
Q Consensus 327 ~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~ 406 (487)
..|+++|++|+|+++|++|+|||.+|+++|++|+|++++.+|++|||+||||||.||+.|.++|.++|++.||+++|+|.
T Consensus 316 ~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~ 395 (473)
T COG0362 316 EEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFK 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccccCC
Q 011394 407 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIA 482 (487)
Q Consensus 407 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~~~ 482 (487)
..+++.+.+||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||||||+|+|++|.||++|++.+
T Consensus 396 ~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 396 SILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-121 Score=871.57 Aligned_cols=477 Identities=60% Similarity=0.975 Sum_probs=454.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+.||+||++.||+++++|++++||.|.+|||+.++++++.+.... +..+....|++|++..|++|++|++.|+.+.
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~ 82 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGA 82 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCC
Confidence 34689999999999999999999999999999999999999876543 3457889999999999999999999999999
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (487)
+++..+++|.++|.+|++|||.+|+.+.+|.++.+.+.++|+-|++++||||+++|+.||++|+||+++++..++++|+.
T Consensus 83 pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 83 PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQK 162 (487)
T ss_pred cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+++++.+++|||.++|+.|+||+||||||+|+|+.||+++|+|.++++.+|++.+++.++|..||.+.+.||+++|+.++
T Consensus 163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dI 242 (487)
T KOG2653|consen 163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADI 242 (487)
T ss_pred HHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHH
Confidence 99998889999999999999999999999999999999999999999977799999999999999999999999999999
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
++-+|. .+.+++++|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|++|++|+.+++.+.+|..+ .....+
T Consensus 243 lk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~--~~~~~~ 319 (487)
T KOG2653|consen 243 LKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVK--RDMGDD 319 (487)
T ss_pred hheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--hhhhhH
Confidence 988764 34489999999999999999999999999999999999999999999999999999999988642 112335
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
...|++++++|+|+++|++|+|||+||++++++++|++|+..|+++||+||||||.||+.|.++|+++|+|+|+++|+.|
T Consensus 320 k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF 399 (487)
T KOG2653|consen 320 KKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFF 399 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCC-ccccccccCCcC
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQ 484 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~-~~h~~w~~~~~~ 484 (487)
..++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++|++.+.+
T Consensus 400 ~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~ 479 (487)
T KOG2653|consen 400 AKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGN 479 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999998777
Q ss_pred CCC
Q 011394 485 SKI 487 (487)
Q Consensus 485 ~~~ 487 (487)
+++
T Consensus 480 ~s~ 482 (487)
T KOG2653|consen 480 VSS 482 (487)
T ss_pred ccc
Confidence 764
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-113 Score=894.73 Aligned_cols=469 Identities=59% Similarity=0.991 Sum_probs=439.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+..... +..+..+.+++|+++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 46899999999999999999999999999999999999998753321 11245788999999877779999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~-~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+.+. +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| +|++++.++|+.|+.+.++||+++++.++
T Consensus 160 a~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 160 SAKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred hhhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9874 78899999999999999999999999999999999999998 577 99999999999999999999999999999
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
+.++|+.++.+++|.|+|.++|||||+|++++|.++|||+|+|++||++|++|..|++|..+++.+++|... .+....+
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~-~~~~~~~ 316 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPA-NKTETED 316 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccc-ccccccc
Confidence 988765332589999999999999999999999999999999999999999999999999999999876410 0001236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccc
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~ 479 (487)
...+++..++|||+|..|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-113 Score=889.14 Aligned_cols=483 Identities=84% Similarity=1.308 Sum_probs=447.3
Q ss_pred CCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 2 ~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+...+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.|++|+++.|+.||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 34567889999999999999999999999999999999999999887421111002346889999999888899999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHH
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIED 161 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ 161 (487)
|++.++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+.+|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHh
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIE 240 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~-g~i~~~~i~~v~~~~~~~~~~s~~~~ 240 (487)
+|+.++++. +++||++|+|+.|+||++||+||+++++++++++|++.++++. | +|++++.++|+.|+.+.+.||+++
T Consensus 161 vL~~ia~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~lle 238 (493)
T PLN02350 161 ILEKVAAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIE 238 (493)
T ss_pred HHHHHhhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHH
Confidence 999999875 7789999999999999999999999999999999999999995 7 999999999999999999999999
Q ss_pred hhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCC
Q 011394 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQS 320 (487)
Q Consensus 241 ~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~ 320 (487)
++.+++..+++|+++|.++.++||++|||||+|++++|.++|+|+|++.+++++|+.|+.|++|..+++.+++|......
T Consensus 239 i~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~ 318 (493)
T PLN02350 239 ITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDIL 318 (493)
T ss_pred HHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccccc
Confidence 99998877666787899999999999999999999999999999999999999999999999999999999866310000
Q ss_pred --CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCC
Q 011394 321 --NQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLAN 398 (487)
Q Consensus 321 --~~~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ 398 (487)
....+...|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 012256789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCcccccc
Q 011394 399 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478 (487)
Q Consensus 399 ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w 478 (487)
|++++.|.+.+.+..++|||+|..|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 011394 479 FKIAKQSK 486 (487)
Q Consensus 479 ~~~~~~~~ 486 (487)
++.+..++
T Consensus 479 ~~~~~~~~ 486 (493)
T PLN02350 479 TKLARKSK 486 (493)
T ss_pred hhhcCccc
Confidence 97666554
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-112 Score=876.57 Aligned_cols=456 Identities=60% Similarity=0.970 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhh
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~ 96 (487)
||.+||+||+++||+|.+|||++++++++.+. +... +++.+.|++|++++++.+|+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3111 3678899999999888899999999999999999999999
Q ss_pred cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCe
Q 011394 97 YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176 (487)
Q Consensus 97 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~ 176 (487)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986688999
Q ss_pred EEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCc
Q 011394 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDG 255 (487)
Q Consensus 177 ~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~ 255 (487)
+.|+|+.|+||++|||||++++++|++++|++.++++ .| ++++++.++|+.||.+.++||+++++.+++..+|...+.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999876522455
Q ss_pred hhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchhhHHHHHHH
Q 011394 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQ 335 (487)
Q Consensus 256 ~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (487)
+++|.|+|.++|||||+|++++|.++|+|+|+|+.++++|+.|..+++|..+++.|.+|.. ....+.+||+|||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~----~~~~~~~~~i~~v~~ 312 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA----KFEGDKAEFIEDVRQ 312 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC----cccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999887642 112356899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhh
Q 011394 336 ALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSA 415 (487)
Q Consensus 336 ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 415 (487)
||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+++.|...+++..++
T Consensus 313 al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~ 392 (459)
T PRK09287 313 ALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDA 392 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccccC
Q 011394 416 WRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 481 (487)
Q Consensus 416 ~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~~ 481 (487)
|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|+++
T Consensus 393 ~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~~ 458 (459)
T PRK09287 393 LRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSED 458 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-110 Score=871.65 Aligned_cols=464 Identities=59% Similarity=0.963 Sum_probs=435.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++.+|+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 024567899999987778999999999999999
Q ss_pred HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHhc
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 168 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~ 168 (487)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 169 QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 169 ~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~-~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
++ +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| +|++++.++|+.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 75 67899999999999999999999999999999999999996 577 9999999999999999999999999999998
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
.+|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+|+++++.|+.|..|++|..+++.|.+|.. .....+.+
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~---~~~~~~~~ 312 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLA---PEPAVDKE 312 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCc---ccccccHH
Confidence 8764 3458999999999999999999999999999999999999999999999999999999877632 00113568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
||+|||||||||++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.||++|+.|..
T Consensus 313 ~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~ 392 (467)
T TIGR00873 313 EFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKD 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCC--cccccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG--SFHTEWFK 480 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~--~~h~~w~~ 480 (487)
.+++..++|||+|..|++.|+|+|++|+||+||++++++++|+|+|||||||||+|+|+|+|++| .||++|++
T Consensus 393 ~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 393 ALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999963
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-84 Score=625.42 Aligned_cols=291 Identities=64% Similarity=1.023 Sum_probs=248.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhcc
Q 011394 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 265 (487)
Q Consensus 186 g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 265 (487)
||+||||||+|+|++||+++|++.++++..|++++++.++|+.||.|.++|||++++.+++++++ .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976669999999999999999999999999999999876 56679999999999
Q ss_pred CCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 011394 266 GMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSY 345 (487)
Q Consensus 266 ~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ai~~~~~~~~ 345 (487)
+|||||+|++++|.++|||+|+|++||++|++|+.+++|..+++.+++|... .....+...|+++|++|++++++++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~--~~~~~~~~~~i~~l~~Aly~~~i~~y 157 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF--DESKEDKEEFIEDLRKALYAAKIISY 157 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S--TTS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc--ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886410 01245788999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhhHHHHHHHHHH
Q 011394 346 AQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 425 (487)
Q Consensus 346 aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~~ 425 (487)
+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.|||++|.|.+.+++..++|||||..|++
T Consensus 158 aQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~ 237 (291)
T PF00393_consen 158 AQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIE 237 (291)
T ss_dssp HHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccc
Q 011394 426 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479 (487)
Q Consensus 426 ~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~ 479 (487)
.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 238 ~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 238 AGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred cCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-61 Score=435.88 Aligned_cols=298 Identities=28% Similarity=0.512 Sum_probs=269.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+||+||||.||.+|.++|.+.||+|++||+|++.++++...+ ++.++|++++++.|..+++|.++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 6899999999999999999999999999999999999988765 467889999999999999999999999899
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+.+++++.+.|.+|++|||.+|+++.++.++.+.++++|++|+|++.|||..+++.|-++|+|||.++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
. |
T Consensus 154 ~---------------g--------------------------------------------------------------- 155 (300)
T COG1023 154 P---------------G--------------------------------------------------------------- 155 (300)
T ss_pred c---------------C---------------------------------------------------------------
Confidence 2 1
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
. +.| .+.+| .++|
T Consensus 156 e-~Gy---------------------------------------------------------l~~Gp---------~GsG 168 (300)
T COG1023 156 E-DGY---------------------------------------------------------LYCGP---------SGSG 168 (300)
T ss_pred c-Ccc---------------------------------------------------------ccccC---------CCcc
Confidence 0 000 00123 2789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
||+|||||+|||++||+|+|||++|+.+ .|++|+++|+++||+|++||||||+.+.++|+++|+|+.+- ..+.+
T Consensus 169 HfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~d 242 (300)
T COG1023 169 HFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVSD 242 (300)
T ss_pred hhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceecc
Confidence 9999999999999999999999999974 68899999999999999999999999999999998875543 33333
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCchhhHHHHHhhccCCcccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDSYRRERLPANLVQAQRDYFGAHTYERI 468 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~ 468 (487)
++++ ||+|++|+++|+|+|+|+.||+ +|.|.+...+..+++.|+|+.||+|..+++
T Consensus 243 ---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 243 ---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred ---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 5677 9999999999999999999995 999998888889999999999999998764
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=429.95 Aligned_cols=295 Identities=29% Similarity=0.504 Sum_probs=258.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 5899999999999999999999999999999999999888654 344578888877666799999999998 89
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|.++|+||++++++.++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
.+. ..++|+|
T Consensus 153 ~~~----~~~~~~G------------------------------------------------------------------ 162 (298)
T TIGR00872 153 PEE----QGYLYCG------------------------------------------------------------------ 162 (298)
T ss_pred CcC----CCEEEEC------------------------------------------------------------------
Confidence 310 0011111
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
+ .+++
T Consensus 163 ------------------------------------------------------------------~---------~G~~ 167 (298)
T TIGR00872 163 ------------------------------------------------------------------P---------CGSG 167 (298)
T ss_pred ------------------------------------------------------------------C---------ccHh
Confidence 0 1455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
+++|++||++++++|++|+|||.+++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |..
T Consensus 168 ~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~~ 237 (298)
T TIGR00872 168 HFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FSG 237 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HHH
Confidence 7789999999999999999999999875 899999999999999999999999999999998875433 555
Q ss_pred HH-hhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCC-CchhhHHHHHhhccCCccccc
Q 011394 408 EI-VDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRE-RLPANLVQAQRDYFGAHTYER 467 (487)
Q Consensus 408 ~~-~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~-~~~~~~i~a~rd~fG~H~~~r 467 (487)
.+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|+|||||||||+|+|++
T Consensus 238 ~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 238 RVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 43 44444 999999999999999999999999988888 999999999999999999986
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=381.34 Aligned_cols=299 Identities=34% Similarity=0.581 Sum_probs=242.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||++|+++|++|++|||++++++++.+.+ +..+.+++|+++.++.+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 5899999999999999999999999999999999998886543 467789999988644479999999998789
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|..+.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
.+. +..++|+|+.|+|+.+|+++|.+.++.++
T Consensus 154 ~~~---~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~--------------------------------------------- 185 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHFVKMVHNGIEYGMMQ--------------------------------------------- 185 (301)
T ss_pred ccc---cCCeEeECCCcHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 620 01257777766666655555555444444
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
T Consensus 186 -------------------------------------------------------------------------------- 185 (301)
T PRK09599 186 -------------------------------------------------------------------------------- 185 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
+|+|+|.++++ ++|++|+++++++|+.||+++|++++...+++.+++.. +.+..
T Consensus 186 ----------------~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~~ 239 (301)
T PRK09599 186 ----------------AYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEISG 239 (301)
T ss_pred ----------------HHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHHH
Confidence 44444444443 35666666667777777777777777777777554321 11222
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHHH-HHhhcCCCchhhHHHHHhhccCCcccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAY-FDSYRRERLPANLVQAQRDYFGAHTYERI 468 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~-~~~~~~~~~~~~~i~a~rd~fG~H~~~r~ 468 (487)
.++. ...+||++..|.+.|+|+|++++++.| +.++....+|.+.+|+||||||+|+|+|+
T Consensus 240 ~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 240 YVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 2222 334499999999999999999999987 99999999999999999999999999985
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=372.04 Aligned_cols=260 Identities=26% Similarity=0.384 Sum_probs=240.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+||||||+|.||.+||.||.++||+|++|||++++. +.+.+.+ ...+.++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 589999999999999999999999999999999994 4444434 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
+++|+ +++.+.+++|.++||+||++|..++++++.++++|.+|+|+|||||+.+|..|+ +||+||+++.+++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+|.+ ++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999977 699999999999999999999999999999999999999 9999999998 5778899999999
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+.+..+ +|.|+|.++++.||++ ++.++|+++|+|+|+.+.+ .+.|
T Consensus 220 ~~~m~~~-~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~-~~ly 265 (286)
T COG2084 220 GPRMLEG-DFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA-AELY 265 (286)
T ss_pred cchhhcC-CCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH-HHHH
Confidence 8877765 4999999999999997 9999999999999998764 3444
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=363.12 Aligned_cols=207 Identities=35% Similarity=0.588 Sum_probs=184.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999998876543 456789999987643469999999998889
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNV 225 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g-~i~~~~i~~v 225 (487)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 621 24799999999999999999999999999999998888765 3555555544
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=341.22 Aligned_cols=262 Identities=22% Similarity=0.340 Sum_probs=242.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++++|||||+|.||.+|+.+|.++||.|++|||+.+++++|.+.|. .++++|.|+++. +|+||+|||++.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~ 103 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPK 103 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChH
Confidence 3679999999999999999999999999999999999999998774 578999999998 999999999999
Q ss_pred hHHHHH---HHHhhcccCCCEE-EecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 86 PVDETI---KTLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 86 ~v~~vl---~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
++++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|++|. +||+|||++.++++.
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~ 183 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAAS 183 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHH
Confidence 999999 3566677788877 99999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHh
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~ 240 (487)
++|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ +.|...|+.+.
T Consensus 184 ~~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~ 252 (327)
T KOG0409|consen 184 PVFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFY 252 (327)
T ss_pred HHHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHh
Confidence 999999976 699999999999999999999999999999999999999 9999999998 56888899999
Q ss_pred hhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 241 ~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
...+.+.++ +|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+.|
T Consensus 253 ~~~p~m~k~-dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly 300 (327)
T KOG0409|consen 253 NPVPGMLKG-DYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLY 300 (327)
T ss_pred CcCchhhcC-CCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHH
Confidence 888877765 4999999999999997 9999999999999998766 3444
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=333.20 Aligned_cols=261 Identities=23% Similarity=0.336 Sum_probs=233.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|+||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 45554432 4567889998887 99999999999889
Q ss_pred HHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 88 DETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011394 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~ 243 (487)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++...
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 599999999999999999999999999999999999999 9999999988 56777899999888
Q ss_pred cccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 244 ~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
+.+..+ +|.++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|..
T Consensus 219 ~~~~~~-~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 219 ERMIKR-TFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 766654 5889999999999997 9999999999999987754 555544
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=327.24 Aligned_cols=264 Identities=20% Similarity=0.259 Sum_probs=232.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ ...+.++.++++. +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~ 70 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDL 70 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHH
Confidence 45899999999999999999999999999999999998887654 3467788888887 9999999999877
Q ss_pred HHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++. ++.+.+++|.++||+||..|..++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++++++++|+
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~ 150 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPI 150 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHH
Confidence 888873 56777889999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+|.+ ++|+|+.|+|+.+|+++|.+...++++++|++.++++.| +|++.+.+++. .+...++.+...
T Consensus 151 l~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~ 219 (296)
T PRK15461 151 LMAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTT 219 (296)
T ss_pred HHHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcc
Confidence 9999976 599999999999999999999999999999999999999 99999999984 444445555444
Q ss_pred c-cccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 243 A-DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 243 ~-~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
. +.+.. ++|.++|.++.+.||++ ++.+.|.++|+|+|+...+ .++|..+
T Consensus 220 ~~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 220 WPNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred ccchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 3 34544 35889999999999997 9999999999999987754 6666444
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.74 Aligned_cols=261 Identities=16% Similarity=0.244 Sum_probs=238.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
..+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ ...++|+.|++++ ||+||+|||++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45899999999999999999999999999999999999998765 3578899999998 9999999999999
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEE-eCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011394 161 DILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~-~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~ 239 (487)
|+|+.+|.+ +++ +|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+.++|+++
T Consensus 154 p~l~~~g~~-------i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQK-------LYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCc-------eEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 999999976 465 599999999999999999999999999999999999 9999999998 5677889999
Q ss_pred hhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
+...+.+..+ +|.++|.++.+.||++ ++++.|.++|+|+|+...+ .++|
T Consensus 223 ~~~~~~~~~~-d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~ 271 (1378)
T PLN02858 223 KNHVPLLLKD-DYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQL 271 (1378)
T ss_pred HhhhhHhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 8887766654 5889999999999997 9999999999999987654 4433
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.10 Aligned_cols=259 Identities=21% Similarity=0.274 Sum_probs=230.5
Q ss_pred EEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHH
Q 011394 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETI 91 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl 91 (487)
|||+|.||.+||++|+++||+|++|||++++++.+.+.+ ...+.++.+++++ +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 699999999999999999999999999999998887643 4567789999887 999999999988889998
Q ss_pred ---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011394 92 ---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 92 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 688888899999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc--
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-- 245 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~-- 245 (487)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||.+....+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 699999999999999999999999999999999999999 9999999998 4566677776655431
Q ss_pred -----cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 246 -----FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 246 -----l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
+.. ++|.++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.+..+
T Consensus 220 ~~~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 220 VMPQAPAS-NGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 122 45888999999999987 9999999999999987654 5655443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=304.01 Aligned_cols=264 Identities=20% Similarity=0.282 Sum_probs=234.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|+|||||+|.||.++|.+|++.|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999988776543 4567788888877 9999999998888
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+|++..+..|. .+++||+++.++.++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999989999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.++.+ ++++|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ ..+.+.|++++..
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 589999999999999999999999999999999999999 9999998887 5677778888877
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.+.+..+ +|.++|.++...||++ .+++.|++.|+|+|+...+ .+++..+
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6666544 5788999999999986 8999999999999988765 5666443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=302.18 Aligned_cols=262 Identities=21% Similarity=0.322 Sum_probs=233.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...++++.+++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998877644 3456788888887 999999999987888
Q ss_pred HHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHH
Q 011394 89 ETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILL 164 (487)
Q Consensus 89 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~ 164 (487)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 456777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
.++.+ ++++|+.|.|+.+|+++|.+....+++++|++.++++.| +|++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 589999999999999999999999999999999999999 9999999998 456667898888776
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.+..+ +|.++|.++.+.||+. ++++.|.+.|+++|+..++ .+++..+
T Consensus 220 ~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 220 RVIDR-TFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 66554 5788999999999997 8999999999999988765 5665444
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=347.22 Aligned_cols=269 Identities=18% Similarity=0.243 Sum_probs=240.1
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+.+.+++|||||+|+||.+||.+|+++||+|++|||++++++.+.+.+ ...+.++++++++ +|+||+|||
T Consensus 320 ~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~ 389 (1378)
T PLN02858 320 QAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVA 389 (1378)
T ss_pred cccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecC
Confidence 345568999999999999999999999999999999999999887654 3457899999987 999999999
Q ss_pred CChhHHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCChhhhcCCC-ccccCCCHHHH
Q 011394 83 AGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 156 (487)
Q Consensus 83 ~~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~ 156 (487)
++.++++++ .++.+.+.+|++|||+||+.|..++++.+.+.+ +|++|+++||+||+.++..|. ++|+||+++.+
T Consensus 390 ~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~ 469 (1378)
T PLN02858 390 NEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEAL 469 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHH
Confidence 999999998 457788889999999999999999999999988 899999999999999999999 99999999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEe-CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcch
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTYV-SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL 235 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~~-G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~ 235 (487)
++++|+|+.++.+ ++++ |+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ +.+.++
T Consensus 470 ~~~~plL~~lg~~-------i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~ 538 (1378)
T PLN02858 470 KSAGSVLSALSEK-------LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGT 538 (1378)
T ss_pred HHHHHHHHHHhCc-------EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhhccc
Confidence 9999999999976 4664 67999999999999999999999999999999999 9999999998 456678
Q ss_pred hhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhcc
Q 011394 236 SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300 (487)
Q Consensus 236 s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~ 300 (487)
||+++...+.+..+ +|.++|.++.+.||++ ++++.|.++|+|+|+...+ .++|..+.
T Consensus 539 s~~~~~~~~~~l~~-d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 539 SWMFENRVPHMLDN-DYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred ChhhhhccchhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 88888777666554 5889999999999997 9999999999999987654 66665554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=245.72 Aligned_cols=153 Identities=27% Similarity=0.456 Sum_probs=138.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 68999999999999999999999999999999999999998765 5689999999998 9999999999999
Q ss_pred HHHHHHH--HhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 87 VDETIKT--LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 87 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+|+||+||+..+.+|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcc
Q 011394 164 LKVAAQ 169 (487)
Q Consensus 164 ~~ig~~ 169 (487)
+.++.+
T Consensus 151 ~~~~~~ 156 (163)
T PF03446_consen 151 EAMGKN 156 (163)
T ss_dssp HHHEEE
T ss_pred HHHhCC
Confidence 999986
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=255.38 Aligned_cols=250 Identities=18% Similarity=0.189 Sum_probs=202.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||||||+|+||.++|.+|+++||+|++||+++++++.+.+.. ...+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 5899999999999999999999999999999999998876411 0001 25667788887776
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCe-EEecCCCCChhh
Q 011394 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLL-YLGMGVSGGEEG 140 (487)
Q Consensus 73 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~i~~pvsgg~~~ 140 (487)
+|+||+|||++.. +..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998743 777788898999999999999999999998887655444 443 567788888877
Q ss_pred hcCCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVA-AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~ig-~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+.+|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765 5788999999999999999997 33 4888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCch--hHHhhhhccCCCCchHHHHHHHHHcCCCchhH
Q 011394 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~ 288 (487)
|++.| +|++++.+++. .+ +.+.. ..|.|+| -...+.||+. +.+..|.++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 1244443 3345677765 7889999999999998
Q ss_pred HHH
Q 011394 289 ASS 291 (487)
Q Consensus 289 ~~a 291 (487)
.++
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=228.86 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=168.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh------------hcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN------------SIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~------------~l~~a 74 (487)
+|||+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 579999999999999999999999999999999999987542110 00 0112222211 01249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC--------------eEEe
Q 011394 75 RVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL--------------LYLG 131 (487)
Q Consensus 75 dvIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~i~ 131 (487)
|+||+|||++ ..+..+++++.+++++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999987 5788888999999999999999999999999999887766432 3456
Q ss_pred cC--CCCChhhhcCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHH
Q 011394 132 MG--VSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (487)
Q Consensus 132 ~p--vsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea 207 (487)
+| +.+|...+..+. ..++|| +++.+++++++|+.++.. ++++++.++|+.+|+++|.+.+..+++++|+
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEG-------ECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCC-------CeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 666655555555 566788 999999999999999865 4788999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 011394 208 YDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 208 ~~l~~~~g~i~~~~i~~v~ 226 (487)
..+|++.| +|++++.+.+
T Consensus 230 ~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHhC-CCHHHHHHHh
Confidence 99999999 9999998886
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=228.00 Aligned_cols=251 Identities=12% Similarity=0.164 Sum_probs=186.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh------------cCCCCccccCCHHHHHhhc
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK------------EGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~------------~g~~~~~~~~s~~e~~~~l 71 (487)
+...|||||||+|+||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++..+++ .+.++.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~-~~~~~~- 76 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSE-IEKIKE- 76 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeC-HHHHcC-
Confidence 4455799999999999999999887 699999999999999987 3321 00 1233333 345555
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEe--------c
Q 011394 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLG--------M 132 (487)
Q Consensus 72 ~~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~--------~ 132 (487)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .
T Consensus 77 --advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 77 --CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred --CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 99999999988 3344445788899999999999999999999976554433 2554433 4
Q ss_pred CCCCChhhhcCCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 133 GVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 133 pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
++.+|......+. .++.|++++..+.++++++.+...- .+++++.++|+.+|+++|.+.+..+++++|+..+
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAG------TYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred cCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcC------cEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444443 4677778888899999999997321 4788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
|++.| +|.+++.+++ +. ++.+.. ...+- +++.++..... ..+..+.++|++++++.+
T Consensus 229 ae~~G-iD~~~v~~a~---~~----~~~~~~----~~pG~-vGG~ClpkD~~----------~L~~~a~~~g~~~~l~~~ 285 (425)
T PRK15182 229 FNRLN-IDTEAVLRAA---GS----KWNFLP----FRPGL-VGGHCIGVDPY----------YLTHKSQGIGYYPEIILA 285 (425)
T ss_pred HHHhC-cCHHHHHHHh---cC----CCCccc----CCCCc-cccccccccHH----------HHHHHHHhcCCCcHHHHH
Confidence 99999 9999998885 21 122111 12222 55655544321 455788889999888876
Q ss_pred H
Q 011394 291 S 291 (487)
Q Consensus 291 a 291 (487)
+
T Consensus 286 a 286 (425)
T PRK15182 286 G 286 (425)
T ss_pred H
Confidence 5
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=222.33 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=180.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----------cCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----------EGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+.+.... ....++..+.+++++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 589999999999999987775 99999999999999888752100 000023344456777766 999
Q ss_pred EEEecCCC----------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-
Q 011394 77 IIMLVKAG----------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 77 Ii~~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~- 145 (487)
||+|||++ ..++++++++.. +.+|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999988877666555 344445443
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 011394 146 --------SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 146 --------~i~~gg~~~~~~~v~~ll~~--ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g 215 (487)
.++.|++++..+++.++|.. ++..+ .+++++.++|+++|+++|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888888888999998854 44332 346899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 216 KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 216 ~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
+|.+++.+++. ... ++....+..+-.|++.++..... ++ .+...++++|++.++
T Consensus 223 -iD~~eV~~a~~---~d~------ri~~~~l~pG~G~GG~ClpkD~~-----------~L-~~~~~~~~~~l~~~~ 276 (388)
T PRK15057 223 -LNTRQIIEGVC---LDP------RIGNHYNNPSFGYGGYCLPKDTK-----------QL-LANYQSVPNNLISAI 276 (388)
T ss_pred -cCHHHHHHHhc---CCC------CCCCccCCCCCCCCCcChhhhHH-----------HH-HHhccCCCcHHHHHH
Confidence 99999998872 211 11122234444466766655432 22 122255677777654
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=220.22 Aligned_cols=289 Identities=13% Similarity=0.058 Sum_probs=202.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C---CCCccccCCHHHHHhhcCCCcEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G---DLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g---~~~~~~~~s~~e~~~~l~~advIi 78 (487)
.+|||+|||+|.||.+||.+|+++||+|++|+|++++.+.+.+..... + ..++..+++++++++. +|+||
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi 79 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAV 79 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEE
Confidence 367999999999999999999999999999999999888877542110 0 0014456788887776 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCC-Cchh--HHHHHHHHHH---cCCeEEecCCCCChhhhcCCC-ccccCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYEN--TERREKAMAE---LGLLYLGMGVSGGEEGARHGP-SLMPGG 151 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~i~~pvsgg~~~a~~G~-~i~~gg 151 (487)
+|+|+. ++++++ +.+.++.++|+++++ .|.. .+.+.+.+.+ +++.+++.|......+...+. .+++|+
T Consensus 80 ~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~ 154 (328)
T PRK14618 80 VAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASP 154 (328)
T ss_pred EECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeC
Confidence 999987 566655 445678899999995 4443 5556666655 667777777654444444455 678899
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCC-eEEEeCC---------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 152 SFEAYKYIEDILLKVAAQVPDSGP-CVTYVSK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~~~~~~-~~~~~G~---------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
+++.+++++++|+..+.++...+. .-.++|. .|.+..+|+.+|.....+.+.++|++.++++.| +++++
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~ 233 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEAT 233 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 999999999999988865300000 0003443 589999999999999999999999999999999 99999
Q ss_pred HHHHHHhhcc-CcchhhhHhhhc--cccccc---cCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHH
Q 011394 222 LQNVFTEWNK-GELLSFLIEITA--DIFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDAR 295 (487)
Q Consensus 222 i~~v~~~~~~-~~~~s~~~~~~~--~~l~~~---~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r 295 (487)
+.++....+- +...|+..+.+. ..+..+ +.+.++|.+....+|+. .+.+.+.++++++|++..+ .+
T Consensus 234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~~--~~ 305 (328)
T PRK14618 234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEAV--AR 305 (328)
T ss_pred hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHHH--HH
Confidence 9887521000 234455555442 123332 12344455566666664 8889999999999998753 34
Q ss_pred HhhccchHHHHHHHhh
Q 011394 296 FLSGLKEERVEAAKVF 311 (487)
Q Consensus 296 ~~s~~~~~r~~~~~~~ 311 (487)
.+...++.......++
T Consensus 306 ~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 306 VARGGWDPLAGLRSLM 321 (328)
T ss_pred HHhCCCCHHHHHHHHh
Confidence 4444445555554444
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=216.24 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=190.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
||||+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 579999999999999999999999999999999999888876531100 0 024456778777766 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecC-CCCchhHHHHHHHHHHc-----CCeEEecCCCCChhhhcCCC-ccccCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAEL-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~i~~pvsgg~~~a~~G~-~i~~gg~ 152 (487)
|||+. +++++++++.+.+.++++||+++ +..+...++..+.+.+. ...++..|..+....+..+. .++.|++
T Consensus 78 ~v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 99984 78999999999888999999998 44444444444555443 34456667665544443444 5567779
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCC-----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-----------------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g 215 (487)
.+.++++.++|+..+.++ .+... .|.+..+|+.+|.+.....+.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 157 EELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred HHHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999877542 22211 388888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcc-CcchhhhHhhhc--cccccccCCC-----CchhHHhhhhccCCCCchHHHHHHHHHcCCCchh
Q 011394 216 KLTNEELQNVFTEWNK-GELLSFLIEITA--DIFGIKDDKG-----DGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 287 (487)
Q Consensus 216 ~i~~~~i~~v~~~~~~-~~~~s~~~~~~~--~~l~~~~~~~-----~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~ 287 (487)
+|++.+.++...-+. ....|+..+.+. ..+..+..+. .+ .+....+|++ .+++.|.++|+|+|+
T Consensus 230 -~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~ 301 (325)
T PRK00094 230 -ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPI 301 (325)
T ss_pred -CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCH
Confidence 999998776421000 001111111111 1111111000 00 1122234443 788999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH
Q 011394 288 IASSLDARFLSGLKEERVEAAK 309 (487)
Q Consensus 288 ~~~a~~~r~~s~~~~~r~~~~~ 309 (487)
..++ .+.+ ...++.+..+..
T Consensus 302 ~~~~-~~~~-~~~~~~~~~~~~ 321 (325)
T PRK00094 302 TEAV-YAVL-YEGKDPREAVED 321 (325)
T ss_pred HHHH-HHHH-cCCCCHHHHHHH
Confidence 8754 4443 444545544443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=200.95 Aligned_cols=251 Identities=10% Similarity=0.063 Sum_probs=181.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~~ 69 (487)
+|+|+|||+|.||.+||.+|+++|++|++||++++..+...+.. ...+. .++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998776543210 00000 02356778888777
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccc
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM 148 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~ 148 (487)
. +|+|++|+|+..+++..+ ..+.+.. +++++|.+||+ +....++++.+...+..+.+.|+.+... .....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~---~~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYL---IPVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCccc---CceEEE
Confidence 6 999999999876555544 5555544 55566665554 4456667777666677788899975321 112335
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011394 149 PG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 149 ~g---g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
++ +++++++.++++++.+|++ ++++++.+.|+ +.|.+ ..++++|++.++++.| +|+++++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999976 58999888887 33443 4578899999999988 999999999
Q ss_pred HHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHH
Q 011394 226 FTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSL 292 (487)
Q Consensus 226 ~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~ 292 (487)
+ ..+.+.+|.+ ..+.... +.|+++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 7 3455556554 3444333 34667788888887764 77788888999999886544
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-24 Score=204.63 Aligned_cols=118 Identities=14% Similarity=0.287 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHH
Q 011394 327 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 406 (487)
Q Consensus 327 ~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~ 406 (487)
||||||||||||||+||.++|+|++|+...+..+ .++.+|++.||.| .++||||+++.++|++.+..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997543222 5777888889988 689999999999999877566799999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 407 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 407 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
...++++| +|++++|+++|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999996 55556665543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=199.69 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=180.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.|||+|||+|.||.+||.+|+++||+|++|||++. .++++++++ +|+||+++|+. +
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 46899999999999999999999999999999853 246677766 99999999985 8
Q ss_pred HHHHHHHHhhc-ccCCCEEEecCC-CCchhHHHHHHHHHHcCCeEEecCCC--CChhhhc---C--CC-ccccCCCHHHH
Q 011394 87 VDETIKTLSAY-MEKGDCIIDGGN-EWYENTERREKAMAELGLLYLGMGVS--GGEEGAR---H--GP-SLMPGGSFEAY 156 (487)
Q Consensus 87 v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~i~~pvs--gg~~~a~---~--G~-~i~~gg~~~~~ 156 (487)
++.+++++.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. . +. .+++|++.+.+
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778999999987 444444434444433 24456663 4443332 2 23 67889999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCC-----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~~G~-----------------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
+.++++|+..+.+ +++.++ .|.+...|+.+|.....+++++.|++.++++.| +++
T Consensus 137 ~~v~~ll~~~~~~-------~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~ 208 (308)
T PRK14619 137 ETVQQIFSSERFR-------VYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQT 208 (308)
T ss_pred HHHHHHhCCCcEE-------EEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 9999999988765 343333 344555669999999999999999999999999 999
Q ss_pred HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHh------hhhccCCCCch----HHHHHHHHHcCCCchhHH
Q 011394 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDK------VLDKTGMKGTG----KWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 220 ~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~------i~~~~~~kgtg----~~~~~~a~~~gv~~P~~~ 289 (487)
+.+.++ .|.+++++. ...+..+ .|..+|.+.. +.+...++.+| +.+.+.++++|+++|++.
T Consensus 209 ~t~~~~-----~g~gd~~~t---~~~~~~r-n~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 209 ETFYGL-----SGLGDLLAT---CTSPLSR-NYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccccc-----cchhhhhee---ecCCCCc-cHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 888764 244444441 1111121 2333333333 23333333333 367788999999999987
Q ss_pred HHHHHHHhhccchHHHHHHHhhc
Q 011394 290 SSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 290 ~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
++ .+.+....+.+.....++.
T Consensus 280 ~v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 280 QV--YRLLQGEITPQQALEELME 300 (308)
T ss_pred HH--HHHHcCCCCHHHHHHHHHc
Confidence 53 4444555566666666654
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-23 Score=199.73 Aligned_cols=122 Identities=13% Similarity=0.224 Sum_probs=107.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhC-CCCCCCcC
Q 011394 323 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRN-ADLANLLV 401 (487)
Q Consensus 323 ~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~-~~~~~ll~ 401 (487)
++++|||||||||||||+.||.++|.|++|+..-...+ .++++||.-||+| .+.|||++++.++|+.. ++..++|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 56899999999999999999999999999998654444 5666777779999 99999999999999975 44456999
Q ss_pred ChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 402 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
|.+++.+.||+++ ||+++.|+++|+|+|.|.+|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999996 88888877653
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=177.76 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=194.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|++|...+..|++.||+|+++|.+++|++.+.+.. ...| ++..+++.+++++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 7999999999999999999999999999999999987765321 1111 47888999998887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~ 143 (487)
+|++|+|||++. .++.+.+.+.+.++..++||.-||+.+.++++..+.+.+....- +-.|...|+.-++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998874 46777889999998889999999999999999888776542110 2233334455555
Q ss_pred CC---------ccccCCCH-HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011394 144 GP---------SLMPGGSF-EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 144 G~---------~i~~gg~~-~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~ 213 (487)
|. .+++|... .+.+.+++|++.+..+ .+.+.+...-.++++|+..|++.+.-+.+++|.-.+|++
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 46777744 4678888888776432 122444556899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHH
Q 011394 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSL 292 (487)
Q Consensus 214 ~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~ 292 (487)
.| +|..++.+.+. .=-+|....+..+-.|+++++.+.+. -.+..|.++|.+.+++.+++
T Consensus 230 ~g-~D~~~V~~gIG---------lD~RIG~~fl~aG~GyGGsCfPKD~~----------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 230 VG-ADVKQVAEGIG---------LDPRIGNHFLNAGFGYGGSCFPKDTK----------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred hC-CCHHHHHHHcC---------CCchhhHhhCCCCCCCCCcCCcHhHH----------HHHHHHHhcCCchHHHHHHH
Confidence 99 99999888761 11133445566666788888887664 35678999999999888653
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=184.51 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=157.9
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHH-----HHHHHhhhhcCCCCccccC
Q 011394 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKKEGDLPLFGFR 62 (487)
Q Consensus 8 ~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~~~~~~ 62 (487)
|||.|.|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 68999999974 8889999999999999999998743 333322 356677
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHH----HcCCeEE-ecCCCC
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMA----ELGLLYL-GMGVSG 136 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~i-~~pvsg 136 (487)
++.+++++ +|+||+|+|++.+++.+++++.+.++++.+|||+||+.|... +.+.+.+. ..|+++. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999886689999999999999999999999998876 45555553 3366555 445555
Q ss_pred ChhhhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHH
Q 011394 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (487)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~ 208 (487)
++.+.. .++.| ++++.+++++++|+.+|.+ +++++ .|.++.+|+++|.+.+..++.++|++
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543222 44444 4899999999999999976 46666 59999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 011394 209 DVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 209 ~l~~~~g~i~~~~i~~v~ 226 (487)
.++++.| .++.++.+-+
T Consensus 220 ~l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 220 SVGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHHhC-CCHHHHHHHH
Confidence 9999999 8888776644
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=186.97 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=187.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---C---------CCCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---G---------DLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---g---------~~~~~~~~s~~e~~~~l~ 72 (487)
||||+|||+|++|.++|..|+++| ++|+++|+++++++.+.+..... + +.++..+++.++.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 579999999999999999999985 78999999999998875432100 0 0025566777776766
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--C--CeEEecCC
Q 011394 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--G--LLYLGMGV 134 (487)
Q Consensus 73 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~i~~pv 134 (487)
+|++|+|||++. .++.+++.+.+.++++++||..||..|.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 4677788999999999999999999999999988877653 3 44556675
Q ss_pred CCChhhhcCC---C-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 135 SGGEEGARHG---P-SLMPGGS-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 135 sgg~~~a~~G---~-~i~~gg~-----~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
+-.+-.+... + .+++||. +++.+.++++++.+.... .+.+.+.-+++++|++.|.+.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~------~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEE------RIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCC------CEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333332 2 4666773 335788888998886321 35567789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCC-
Q 011394 206 EAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA- 284 (487)
Q Consensus 206 Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~- 284 (487)
|...+|++.| +|..++.+.+. ... . +....+..+-.+++.++..... ..+..|.++|++
T Consensus 232 Ela~lce~~g-iD~~eV~~~~~---~d~---r---ig~~~l~PG~G~GG~ClpkD~~----------~L~~~a~~~g~~~ 291 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAVG---KDS---R---IGPKFLNASVGFGGSCFQKDIL----------NLVYICECNGLPE 291 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHhC---CCC---c---CCCCCCCCCCCCCCcchhhhHH----------HHHHHHHHcCCch
Confidence 9999999999 99999988762 211 0 1112334443466666654432 455778888987
Q ss_pred -chhHHHH
Q 011394 285 -APTIASS 291 (487)
Q Consensus 285 -~P~~~~a 291 (487)
.+++.++
T Consensus 292 ~~~l~~~~ 299 (473)
T PLN02353 292 VAEYWKQV 299 (473)
T ss_pred HHHHHHHH
Confidence 6666654
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-21 Score=188.30 Aligned_cols=122 Identities=11% Similarity=0.167 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCC
Q 011394 323 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 402 (487)
Q Consensus 323 ~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~ 402 (487)
++++|||||||||+|||+.||.++|.|++|+.+.+..+ .++++++.-||.| .+.|+|++++.++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 56899999999999999999999999999999776666 7888899999999 99999999999999876555668999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++.+.+.+|+++ +|+|..|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999996 78888887765
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=174.99 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=163.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
++|||||||++|.++|..++++|++|+++|.|+.+++.+.+.. ...| +++++++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 7999999999999999999999999999999999987765311 1111 4667777777653
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeE-EecCCCCChhh
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLY-LGMGVSGGEEG 140 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-i~~pvsgg~~~ 140 (487)
||++|+|||++- .+++..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|-.+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999872 4566778999999999999999999999999998877653 3333 12222233343
Q ss_pred hcCCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
...|. -++.|-+++..+.+..+++.+-.. +..+.+.-.++++|+..|.+...++++++|...+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33332 344555888889999999998764 47778889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011394 212 KSVGKLTNEELQNVF 226 (487)
Q Consensus 212 ~~~g~i~~~~i~~v~ 226 (487)
.+.| +|..++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999888876
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=168.40 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=163.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 689999999999999999999998 89999 99999988776532 5567788888876 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
+ .++++++.++.+.+.++++||+..++.+.. .+.+.+.. . +++ .+|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 4 589999999988888999988876554332 23332221 1 566 478766554332222 233455889999999
Q ss_pred HHHHHHhccCCCCCCeEEEe---------CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcc
Q 011394 161 DILLKVAAQVPDSGPCVTYV---------SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK 231 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~---------G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~ 231 (487)
++|+.+|. + +++ +..|+|.. +.+.+++.++|+ +.+.| +|+++..+++..
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~--- 203 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ--- 203 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---
Confidence 99999996 3 565 44577664 467788888888 77788 999999998743
Q ss_pred CcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 232 GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 232 ~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
+...++.+ +... ...+.-+.+.+ ...-||..-.+....+.|++-.+..
T Consensus 204 ~~~gs~~l------~~~~-~~~~~~l~~~v---~spgG~t~~~l~~l~~~g~~~~~~~ 251 (266)
T PLN02688 204 TVLGAAKM------VLET-GKHPGQLKDMV---TSPGGTTIAGVHELEKGGFRAALMN 251 (266)
T ss_pred HHHHHHHH------HHhc-CCCHHHHHHhC---CCCchHHHHHHHHHHHCChHHHHHH
Confidence 33333322 1111 12232233333 3334555556677778888765544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=185.91 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=148.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~~~~~~s~~e~~~~l 71 (487)
.|||||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ +++.++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 368999999999999999999999999999999998776532100 000 25677888888877
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-cccc
Q 011394 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMP 149 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~ 149 (487)
||+|++|+|+..+++..+ .++.+.++++ +||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 999999999987777654 6676666555 5667777776544 566666667778889986632 2345 5677
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 011394 150 GGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 150 gg~---~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~-~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
+|+ ++.++.++++|+.+|.+ .++++. .++|.+...++.. ++|++.|+++.| +|++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~-------~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMK-------PVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-------EEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 775 79999999999999976 477763 5555555556666 499999999988 999999999
Q ss_pred HH
Q 011394 226 FT 227 (487)
Q Consensus 226 ~~ 227 (487)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=170.96 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=143.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCC----------CCccccCCHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGD----------LPLFGFRDPESFVNS 70 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~~~~~~s~~e~~~~ 70 (487)
++|+|||+|.||.+||.+|+++|++|++||+++++++++.+. +...+. .+++.++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 589999999999999999999999999999999998876532 110000 024456778777776
Q ss_pred cCCCcEEEEecCCChhHHHH-HHHHhhcccCCCEE-EecCCCCchhHHHHHHHH-HHcCCeEEecCCCCChhhhcCCC-c
Q 011394 71 IQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCI-IDGGNEWYENTERREKAM-AELGLLYLGMGVSGGEEGARHGP-S 146 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l-~~~g~~~i~~pvsgg~~~a~~G~-~ 146 (487)
+|+||+|+|++.+++.. +.++.+.++++.++ +++||..+....+..+.. +..|.||+ +|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776644 47788888888866 788888775543332211 12478888 788664 4 5
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 147 LMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 147 i~~gg---~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
.|++| +++++++++++++.++++ ++++++ ..| ++.|.+.+ .+++|++.+.++.. .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~-------~v~v~d-~~G----f~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKE-------TVVVNE-FPG----FVTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67776 999999999999999976 478875 334 45566544 45699999998765 7899998
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=167.25 Aligned_cols=192 Identities=13% Similarity=0.197 Sum_probs=135.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|+||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 69999999999999999999998 79999999864 566665532 24567788888776 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEec-CCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCCC---HHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDG-GNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGGS---FEAY 156 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg~---~~~~ 156 (487)
+. ++.+++.++.+.+.++++||++ ++..+...++ .+ ..+..++ .+|. ...+..+. +++++++ ++.+
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~~~ 146 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKDVPIIRAMPN---TSAAILKSATAISPSKHATAEHI 146 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCCCeEEEECCC---HHHHHhcccEEEeeCCCCCHHHH
Confidence 75 7888889998888889999997 5555443333 22 2233333 2232 23344343 6776664 6788
Q ss_pred HHHHHHHHHHhccCCCCCCeEEE--eCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTY--VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~--~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~ 228 (487)
+.++++|+.+|..+...|.. ++ ++..|+|.. +.+.++..+.|+ +.+.| +|+++..+++..
T Consensus 147 ~~v~~l~~~~G~~~~v~e~~-~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~~ 208 (279)
T PRK07679 147 QTAKALFETIGLVSVVEEED-MHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHhCCcEEEeCHHH-hhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 99999999999643111111 14 566777774 344555555555 77888 999999999853
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=178.63 Aligned_cols=190 Identities=12% Similarity=0.149 Sum_probs=144.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~ 68 (487)
...+|||||+|.||.+||.+|+.+||+|++||++++++++..+.. ...|. .+++.+.+++++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~ 85 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA 85 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC
Confidence 456899999999999999999999999999999999887742111 01100 0356778887654
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEE-EecCCCCchhHHHHHHHHH--H--cCCeEEe-cCCCCChhhh
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCI-IDGGNEWYENTERREKAMA--E--LGLLYLG-MGVSGGEEGA 141 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~--~--~g~~~i~-~pvsgg~~~a 141 (487)
+ ||+||.|||++.+++..+ .++....+++.++ .++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 -~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~----- 153 (507)
T PRK08268 86 -D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK----- 153 (507)
T ss_pred -C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-----
Confidence 4 999999999999998876 5566667788888 478887764 3444332 2 3899998 67762
Q ss_pred cCCCccccC---CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011394 142 RHGPSLMPG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (487)
Q Consensus 142 ~~G~~i~~g---g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i 217 (487)
-..+++ +++++++.+.++++.+++. .+++++ +| ++.|.+.. ..++|++.++++.+ .
T Consensus 154 ---LvEvv~g~~Ts~~~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~ 213 (507)
T PRK08268 154 ---LVEVVSGLATDPAVADALYALARAWGKT-------PVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-A 213 (507)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-C
Confidence 234454 5899999999999999976 478886 45 46677654 47799999999988 9
Q ss_pred CHHHHHHHHH
Q 011394 218 TNEELQNVFT 227 (487)
Q Consensus 218 ~~~~i~~v~~ 227 (487)
+++++.+++.
T Consensus 214 ~~~~iD~al~ 223 (507)
T PRK08268 214 DPATIDAILR 223 (507)
T ss_pred CHHHHHHHHH
Confidence 9999999985
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=168.14 Aligned_cols=261 Identities=18% Similarity=0.175 Sum_probs=161.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC---C-------CccccCCHHHHHhhcCCCcE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD---L-------PLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~-------~~~~~~s~~e~~~~l~~adv 76 (487)
||||+|||+|.||..+|..|+++||+|++|||++. .+.+.+.+..... . ++..+++. +.+.. +|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALAT---ADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccC---CCE
Confidence 57999999999999999999999999999999753 3555443321000 0 01223344 33344 999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec--C---CCCChhhhc---CCCccc
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM--G---VSGGEEGAR---HGPSLM 148 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~--p---vsgg~~~a~---~G~~i~ 148 (487)
||+|||+. ++.++++.+.+.+.++.+|++++++. ...+.+.+.+.+ ..++.+ + +++++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999986 67888999999998999999998765 334445554432 233332 2 343333333 333 22
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHH--------------------HHHHHHHH
Q 011394 149 PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD--------------------MQLIAEAY 208 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~--------------------~~~~~Ea~ 208 (487)
.+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 22 235568899999988765 478899999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhccC--cchhhhHhhhccccccccCCCCchhHHhhhhccCCC-------CchHHHHHHHH
Q 011394 209 DVLKSVGKLTNEELQNVFTEWNKG--ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMK-------GTGKWTVQQAA 279 (487)
Q Consensus 209 ~l~~~~g~i~~~~i~~v~~~~~~~--~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k-------gtg~~~~~~a~ 279 (487)
.++++.| ++++.+.++...+... .+.+++++...+.+...+ +... ..+++|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211000 112233222211111111 1100 1122221100 012 6889999
Q ss_pred HcCCCchhHHHH
Q 011394 280 DLSVAAPTIASS 291 (487)
Q Consensus 280 ~~gv~~P~~~~a 291 (487)
++|+|+|+....
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998764
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-19 Score=161.57 Aligned_cols=198 Identities=32% Similarity=0.500 Sum_probs=142.4
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC
Q 011394 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~ 143 (487)
++++...|+.-|+||----+ ..++.++.-.....+|-.++|++|+--..- .++|..+. .||++.+.+
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~lM----iGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCLM----IGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceEE----ecCcHHHHH
Confidence 44555556667888776533 355556554445568889999998853221 23455443 445544433
Q ss_pred CC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 144 GP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 144 G~-~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.- .+ ++.+.+ ...| ..|+|+.|+||++|||||+|+|++|++++|.+.++++.- .|.+ +
T Consensus 144 ~~~pi--------f~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~ 202 (300)
T COG1023 144 RLEPI--------FKALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-L 202 (300)
T ss_pred HHHHH--------HHhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-H
Confidence 21 11 111111 0335 489999999999999999999999999999999999876 6643 3
Q ss_pred HHHHHhhccC-cchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccc
Q 011394 223 QNVFTEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 223 ~~v~~~~~~~-~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~ 301 (487)
.++.+.||.| ..+||+++.+...+++. .-++++.+.+...|+|+|++++|.++|+|+|+++.|+..||.|...
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~d------~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKKD------PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhhC------CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccch
Confidence 4455558885 56899999998877642 2478899999999999999999999999999999999999988654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=165.93 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=194.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++||+|||.|.+|++||..|+++||+|.+|.|+++.++++.+...+.. + .++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 579999999999999999999999999999999999998876532210 0 046678889999887 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHHHc-C---CeEEecCCCCChhhhcCCC-cc-ccCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAEL-G---LLYLGMGVSGGEEGARHGP-SL-MPGGS 152 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~~-g---~~~i~~pvsgg~~~a~~G~-~i-~~gg~ 152 (487)
+||+. .++++++++.+++.++.++|.++.+.-..+.++ .+.+++. + +.++..|-+ ..+-++.-| .+ +.+-|
T Consensus 78 avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 99985 899999999889999999999998876655444 3333332 3 334444433 233444444 44 45568
Q ss_pred HHHHHHHHHHHHHH-----------hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 153 FEAYKYIEDILLKV-----------AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 153 ~~~~~~v~~ll~~i-----------g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
++..++++.+|..= |.++...-|+++.++. |......+-.|+-.+.+...++|+..+....| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 88888898888651 1111011145555543 66667788899999999999999999999999 66775
Q ss_pred HHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHH----HHHHHcCCCchhHHHHHHHHHh
Q 011394 222 LQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIASSLDARFL 297 (487)
Q Consensus 222 i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~~a~~~r~~ 297 (487)
+..+- .-|.+--+..+.+++..+.+.-...+..++..+...+|.-+|..+. +.|+++++++|++++ |++ .+
T Consensus 234 ~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-Vy~-vl 308 (329)
T COG0240 234 FMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-VYR-VL 308 (329)
T ss_pred hcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-HHH-HH
Confidence 54331 0122222222222222221111222334556666668888886555 667899999998875 444 44
Q ss_pred hccchHHHHHHHhh
Q 011394 298 SGLKEERVEAAKVF 311 (487)
Q Consensus 298 s~~~~~r~~~~~~~ 311 (487)
-..++.+.....++
T Consensus 309 ~~~~~~~~~~~~L~ 322 (329)
T COG0240 309 YEGLDPKEAIEELM 322 (329)
T ss_pred hCCCCHHHHHHHHh
Confidence 44444444444443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=163.27 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=133.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+++ +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 58999999999999999999999999999999998888766542 2222233345555 99999999976 67
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCh-hhhcCCC-cccc----------CCCHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 154 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~-~~a~~G~-~i~~----------gg~~~ 154 (487)
..+++++.+.+.++.+|+|+++..+...+.. .+....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~----~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAW----EKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHH----HHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 7788999998989999999998875543332 223345887 6999876 3444333 2222 35788
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLI 204 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~ 204 (487)
.++.++++++.+|.+ ++++++.+....++++.|...+....++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999976 4889999999999999888766554433
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=174.23 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=139.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~~~~~~s~~e~~ 68 (487)
+.+||||||+|.||.+||.+|+++||+|++||++++++++..+.. ...|.. +++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 346899999999999999999999999999999999887542210 011100 355677887653
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEe-cCCCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLG-MGVSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~-~pvsgg~~~a~ 142 (487)
+ ||+||.|||++.+++..+ .++....+++.+ +.++|+....+ ++++.+. ..|.||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------ 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTI-IASNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------ 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHH-HHHHhcCcccceEEEeccCccccCc------
Confidence 4 999999999998888776 456565655554 54333333333 3444442 35899998 67763
Q ss_pred CCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011394 143 HGPSLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (487)
Q Consensus 143 ~G~~i~~gg---~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~ 218 (487)
-..+++| ++++++.+.++++.+|+. .+++|+ +| ++.|.+. ...++|++.++++.+ .+
T Consensus 152 --LvEvv~g~~Ts~e~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~ 212 (503)
T TIGR02279 152 --LVEVVSGLATAAEVAEQLYETALAWGKQ-------PVHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AA 212 (503)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCe-------eeEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CC
Confidence 2456777 899999999999999976 478886 45 2666665 457899999999988 99
Q ss_pred HHHHHHHHH
Q 011394 219 NEELQNVFT 227 (487)
Q Consensus 219 ~~~i~~v~~ 227 (487)
++++.++++
T Consensus 213 ~~~ID~al~ 221 (503)
T TIGR02279 213 PAVLDAALR 221 (503)
T ss_pred HHHHHHHHH
Confidence 999999985
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=157.16 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=141.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998887665432 12345666754 3 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCC----hhhhc----CCC-ccccC---CC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 152 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg----~~~a~----~G~-~i~~g---g~ 152 (487)
.+..++.++.+ +.++.+|+|++++.+...+...+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788889988 889999999988765444333222 23568877 99875 44433 465 45543 46
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....++++++. .+ .+.+++..+
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 78899999999999976 589999999999999998853 55555555541 24 666665444
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=156.18 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~~~~~~s~~e~~~ 69 (487)
+.+|||||+|.||.+||..|+.+|++|++||++++.++...++. ...|.. +++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 45899999999999999999999999999999999877632211 010000 3456777744 45
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcc-cCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEe-cCCCCChhhhcCC
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAEL--GLLYLG-MGVSGGEEGARHG 144 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~-~pvsgg~~~a~~G 144 (487)
. +|+||.|+|++.+++..+ ..+.... +++.++++.|++.|...........++ |+||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 4 999999999998888777 4455555 789999998888877655443333444 788887 566655430
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 145 PSLMPGGSFEAYKYIEDILL-KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 145 ~~i~~gg~~~~~~~v~~ll~-~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
....++++++++.+.+++. .+++.+ +.+++ ..|. +.|.+ ....++|++.+.++.. .++++++
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pGf----i~nRi---~~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSGF----VVNAL---LVPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCCh----HHHHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 2345679999999999988 588763 66655 3444 44555 4555699999998766 7899998
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=162.11 Aligned_cols=300 Identities=14% Similarity=0.106 Sum_probs=187.1
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC----CC----CccccCCHHHHHhhcC
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG----DL----PLFGFRDPESFVNSIQ 72 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~~~~~~s~~e~~~~l~ 72 (487)
|...+.+|||+|||+|.||..+|..|+++| .|.+|.|+++.++.+.+.+.... +. ++..++++++.++.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~-- 77 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC-- 77 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--
Confidence 556677899999999999999999999999 78999999999988876532100 00 23456677777665
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHHH----cCCeEEecCCCCChhhhcCCC--
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAE----LGLLYLGMGVSGGEEGARHGP-- 145 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~----~g~~~i~~pvsgg~~~a~~G~-- 145 (487)
+|+||+++|+. .++++++++.+.+.++.++|.++++....+.++ .+.+.+ .....+..|-.-. + ...|.
T Consensus 78 -aDlVilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~-e-v~~g~~t 153 (341)
T PRK12439 78 -ADVVVMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR-E-VAEGYAA 153 (341)
T ss_pred -CCEEEEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH-H-HHcCCCe
Confidence 99999999975 799999999999988888999888876542222 222222 1122334442211 1 11344
Q ss_pred cc-ccCCCHHHHHHHHHHHHHHhccCC--CC---------CCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011394 146 SL-MPGGSFEAYKYIEDILLKVAAQVP--DS---------GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 146 ~i-~~gg~~~~~~~v~~ll~~ig~~~~--~~---------~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~ 213 (487)
.+ +.+.+++..+.++.+|+.-+-++. ++ -++++.++ .|....+.+..|.....+...+.|+..+++.
T Consensus 154 ~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a 232 (341)
T PRK12439 154 AAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVA 232 (341)
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 23 334466777888888865443210 00 02222222 2333334555666667788899999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHH----HHHHHcCCCchhHH
Q 011394 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIA 289 (487)
Q Consensus 214 ~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~ 289 (487)
.| .+++++..+- --|.+--......++..+-+..+..+..++.+.+..++.-+|..++ +.++++++.+|++.
T Consensus 233 ~G-~~~~t~~gl~---G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~ 308 (341)
T PRK12439 233 MG-GNPETFAGLA---GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAR 308 (341)
T ss_pred hC-CCcccccccc---hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHH
Confidence 98 7887765431 0011111111111111111111223345666666677777785555 66789999999988
Q ss_pred HHHHHHHhhccchHHHHHHHhhcCC
Q 011394 290 SSLDARFLSGLKEERVEAAKVFKSG 314 (487)
Q Consensus 290 ~a~~~r~~s~~~~~r~~~~~~~~~~ 314 (487)
+ ..+.+...++.+..+..++..+
T Consensus 309 ~--~~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 309 E--VDAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred H--HHHHHhCCCCHHHHHHHHhcCC
Confidence 6 3566666677777777776543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=155.68 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=135.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C-----C------CCccccCCHHHHHhhcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G-----D------LPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g-----~------~~~~~~~s~~e~~~~l~~a 74 (487)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + . -++..++++++++++ +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 56899999999999999999999999999999999887766521000 0 0 013456677777766 9
Q ss_pred cEEEEecCCChh-HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCCcccc
Q 011394 75 RVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGPSLMP 149 (487)
Q Consensus 75 dvIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~~i~~ 149 (487)
|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+... ++||.++|..+ ....+++
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~~ 152 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVVR 152 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccC------ceEEEeC
Confidence 999999998754 4566777777666665554444333 2 33555544321 33443333211 1113444
Q ss_pred CC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 150 GG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 150 gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
|. +++.++.+.++|+.+|.. ++++++...|. +++|. ....++|++.++++.| ++++++.+++.
T Consensus 153 g~~t~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 153 GDKTSPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 43 789999999999999975 47787655555 55555 3467899999999988 99999999873
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=154.16 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=140.2
Q ss_pred CCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC------CCCccccCCHHHHH
Q 011394 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG------DLPLFGFRDPESFV 68 (487)
Q Consensus 2 ~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~~~~~~~~s~~e~~ 68 (487)
.......+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+... ..+ ..++..++++++++
T Consensus 2 ~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 2 AVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV 81 (321)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence 33444578999999999999999999999999999999987665433110 000 00356677888887
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcC
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~ 143 (487)
++ ||+|+.++|...+++..+ .++.+.++++. ||.+||+. -...++.+.+... |.||+..|-.
T Consensus 82 ~~---aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~-------- 148 (321)
T PRK07066 82 AD---ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYL-------- 148 (321)
T ss_pred cC---CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCcccc--------
Confidence 76 999999999998888666 67777777766 66666664 3444555544321 4566544311
Q ss_pred CC--ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 144 GP--SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 144 G~--~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
-+ -++.| .++++++.+..+++.+|+++ +.+...-.|+ +.|.+... ++.|++.+.++.. .++
T Consensus 149 ~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pGF----i~NRl~~a---~~~EA~~lv~eGv-as~ 213 (321)
T PRK07066 149 LPLVEVLGGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPGF----IADRLLEA---LWREALHLVNEGV-ATT 213 (321)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCccH----HHHHHHHH---HHHHHHHHHHhCC-CCH
Confidence 11 24554 37899999999999999763 5664444454 55776544 5599999999877 899
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
++++.++.
T Consensus 214 edID~a~~ 221 (321)
T PRK07066 214 GEIDDAIR 221 (321)
T ss_pred HHHHHHHH
Confidence 99999873
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=151.64 Aligned_cols=190 Identities=14% Similarity=0.211 Sum_probs=133.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~----------~~~~~~~s~~e~~~ 69 (487)
.+||+|||+|.||.+||.+|+++|++|++||++++.++.+.+... ..+. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 358999999999999999999999999999999998776543210 0000 02455666654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEE-ecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhhhc
Q 011394 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCII-DGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGAR 142 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~a~ 142 (487)
+ +|+||+|+|+..+++ .++.++.+.++++.+|+ ++|+..+ + .+++.+.. .|+||++ +|++++.+
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~ve--- 153 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVE--- 153 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEE---
Confidence 4 999999999876655 45578888888898887 4554432 2 45544421 2678887 45543322
Q ss_pred CCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
++ .+++++.++.+.++|+.+|.. ++++++.+ | +++++. +..++.|++.+..+.- .+++
T Consensus 154 ----i~~g~~t~~~~~~~~~~~~~~~gk~-------~v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~ 213 (292)
T PRK07530 154 ----LIRGIATDEATFEAAKEFVTKLGKT-------ITVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVE 213 (292)
T ss_pred ----EeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHH
Confidence 33 458999999999999999976 36776633 2 334333 4556799999988754 5899
Q ss_pred HHHHHH
Q 011394 221 ELQNVF 226 (487)
Q Consensus 221 ~i~~v~ 226 (487)
+++.++
T Consensus 214 ~iD~~~ 219 (292)
T PRK07530 214 AIDTAM 219 (292)
T ss_pred HHHHHH
Confidence 998886
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=152.15 Aligned_cols=194 Identities=13% Similarity=0.201 Sum_probs=132.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~~~~~~s~~e~~~ 69 (487)
+++|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+.. .+...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 4589999999999999999999999999999999887642211 0000000 12334444 4455
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEE-ecCCCCchhHHHHHHH-HHHcCCeEEecCCCCChhhhcCCCc
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCII-DGGNEWYENTERREKA-MAELGLLYLGMGVSGGEEGARHGPS 146 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~-l~~~g~~~i~~pvsgg~~~a~~G~~ 146 (487)
. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+....+.... .+-.|+||+++|..+.. ..
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ve 153 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------VE 153 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------EE
Confidence 5 999999999887777654 67888888888886 6776654433222211 11236788888865321 12
Q ss_pred ccc--CCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 147 LMP--GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 147 i~~--gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
++. +++++.++.++++|+.+|.. ++++++ ..| .+.|.+. ...++|++.+.++.. .+++++..
T Consensus 154 iv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g----~i~nri~---~~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 154 IIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPG----FIVNRIL---MPMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccc----HHHHHHH---HHHHHHHHHHHHcCC-CCHHHHHH
Confidence 333 35899999999999999975 466765 223 3455554 445699999999876 88999988
Q ss_pred HH
Q 011394 225 VF 226 (487)
Q Consensus 225 v~ 226 (487)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 75
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=155.98 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=143.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|+||| +|.||..+|..|.++|++|++|||++++..++.... ++..+.++.+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999998876655432 24456677777776 99999999985 6
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcCCC-ccccC---CCHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYKYIED 161 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~G~-~i~~g---g~~~~~~~v~~ 161 (487)
+.+++.++.+.+.++.+|+|++++.+...+.+.+.+ ..+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 788999999999999999999998866666555543 357889977 8887655555677 44443 36788899999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+|+.+|.+ ++++++... -+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~-------v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGAR-------VIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCE-------EEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 99999976 466766432 3344333333344444445444 5567 88776543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=155.20 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=141.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.+++|+||| +|.||.++|+.|.++||+|++||+++. +++++++.+ +|+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 457899998 999999999999999999999998631 134555665 99999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC-CHHHHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYKYIED 161 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ 161 (487)
....++.++.+ +++|.+|+|+|++.+.....+.+.+ ...|+ ..|++|.+.....|. .+++++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 56778888888 8999999999998866655554432 23588 669999877666666 555555 6788999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+++.+|++ ++++++.+....++++. .+ .++..++++..+++ .+ .+.+++.+
T Consensus 229 l~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999987 58999999999999998 43 66667788887766 56 78776544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=149.75 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=136.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh----------hcCCC----------CccccCCHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------KEGDL----------PLFGFRDPES 66 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----------~~g~~----------~~~~~~s~~e 66 (487)
..+|+|||+|.||.+||..|+.+|++|++||++++.++...+... ..+.. ++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 468999999999999999999999999999999998765432110 00000 12334444 3
Q ss_pred HHhhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhh
Q 011394 67 FVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEG 140 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~ 140 (487)
.+++ +|+||+|+|+...+ ..++.++.+.++++.+|+..+++. ...++++.+.. .|+||+. +|++++.+
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE- 155 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE- 155 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-
Confidence 4444 99999999987654 455677888888888887555544 33455555532 2778886 56776644
Q ss_pred hcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 141 ARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 141 a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
+..|+. .++++++.+.++++.+|+. ++++++.+.....|+++| .++|++.+.++.- .+++
T Consensus 156 v~~g~~----T~~e~~~~~~~~~~~lgk~-------~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~ 215 (291)
T PRK06035 156 VVRAAL----TSEETFNTTVELSKKIGKI-------PIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIK 215 (291)
T ss_pred EeCCCC----CCHHHHHHHHHHHHHcCCe-------EEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHH
Confidence 234441 2899999999999999976 477887666666666654 4589999988754 6899
Q ss_pred HHHHHH
Q 011394 221 ELQNVF 226 (487)
Q Consensus 221 ~i~~v~ 226 (487)
+++.++
T Consensus 216 ~iD~~~ 221 (291)
T PRK06035 216 DIDEMC 221 (291)
T ss_pred HHHHHH
Confidence 999886
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-15 Score=144.46 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=135.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++..+.++.+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 24567788888776 9999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccC--CCHHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYKYIE 160 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v~ 160 (487)
. ++.++++++.+++.++++||+++++. ....+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999898899999999865 3444544443333344432 234455777 44555 4667889999
Q ss_pred HHHHHHhccCCCCCCeEEEeCCc-hhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKG-GSG-NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~-G~g-~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~ 228 (487)
++|+.+|.. +++.+. ... ..+=-+.-++.+.++..+.++. .++.| +++++..+++..
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 999999953 444432 000 0001112245555565555553 24478 999998888743
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=140.82 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=150.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+|||||+|+||.+|++.|.+.|+. +.+|||++++.+++.+... +...+.++.+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4899999999999999999999864 5799999999888876531 14567788888887 9999999995
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (487)
..+.++++++ . +.++++||++..+. ..+.+.+.+......+..+|+.... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56889999977654 4444555444334456678873222 223555555543 57899999
Q ss_pred HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
.+|..+ +++++..-...-.+. +..+.++.++.++..++++.| +|+++..+++...-.| ...
T Consensus 142 ~lG~~~--------~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G---------~~~ 202 (258)
T PRK06476 142 ALGTAV--------ECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFAS---------LAQ 202 (258)
T ss_pred hcCCcE--------EECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---------HHH
Confidence 999753 243210000000000 122233456788888899999 9999998887432222 222
Q ss_pred c-cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhH
Q 011394 245 I-FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (487)
Q Consensus 245 ~-l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~ 288 (487)
. +... +..+.-+.|.+ ...-||..-.++.-.+.|+.-.+.
T Consensus 203 l~~~~~-~~~~~~l~~~v---~spgGtT~~gl~~le~~~~~~~~~ 243 (258)
T PRK06476 203 DAVRST-KTDFSALSREF---STKGGLNEQVLNDFSRQGGYAALT 243 (258)
T ss_pred HHHhcC-CCCHHHHHHhC---CCCCchHHHHHHHHHHCChHHHHH
Confidence 3 2222 22333333333 333455544555556677754433
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-16 Score=167.15 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=98.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHhhCCCCC-CC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNADLA-NL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~-~l 399 (487)
.+++||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998422 3 555 4556669998 489999999999998765432 58
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++|.+.+...+++++ ||+|++|+++|+|+|+|++||. ++++++.+|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 889999999999999 9999999999999999999996 55556655543
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=153.93 Aligned_cols=294 Identities=9% Similarity=0.002 Sum_probs=183.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhcC---C----CCccccCCHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKEG---D----LPLFGFRDPES 66 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g---~----~~~~~~~s~~e 66 (487)
..+||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+.+.+.+.. + .++..++++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4579999999999999999999998 89999999986 3555554432210 0 04566788888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHhh--cccCCCEEEecCCCCchhHH---HHHHHHHH---cCCeEEecCCCCCh
Q 011394 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSA--YMEKGDCIIDGGNEWYENTE---RREKAMAE---LGLLYLGMGVSGGE 138 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~~---~~~~~l~~---~g~~~i~~pvsgg~ 138 (487)
++++ +|+||++||+. .++++++++.+ .+.++.++|.++.+....+. .+.+.+.+ ..+.++..|-+. .
T Consensus 90 av~~---aDiIvlAVPsq-~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A-~ 164 (365)
T PTZ00345 90 AVED---ADLLIFVIPHQ-FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA-N 164 (365)
T ss_pred HHhc---CCEEEEEcChH-HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH-H
Confidence 8887 99999999974 89999999998 78777789988776643331 12233322 223334444322 2
Q ss_pred hhhcCCC--ccccCCCHHHHHHHHHHHHHHhcc-----------CCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 139 EGARHGP--SLMPGGSFEAYKYIEDILLKVAAQ-----------VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 139 ~~a~~G~--~i~~gg~~~~~~~v~~ll~~ig~~-----------~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
+-++.-+ .++++-+.+..+.++++|..=.-+ +...-++++.++. |.....++-.|+-.+.+...++
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~ 243 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLE 243 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHH
Confidence 3333344 345566888888888888531111 0011134444432 4445566778999999999999
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCC---CchhHHhhhhcc--CCCCchHHHH----
Q 011394 206 EAYDVLKSVG-KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKG---DGYLVDKVLDKT--GMKGTGKWTV---- 275 (487)
Q Consensus 206 Ea~~l~~~~g-~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~---~~~~l~~i~~~~--~~kgtg~~~~---- 275 (487)
|+..+++..| |.+++++..+-. -|.+--.... ++..+-+..+. ++..++.+.+.. +++-+|..++
T Consensus 244 Em~~l~~a~g~~~~~~T~~glaG---~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~ 318 (365)
T PTZ00345 244 EMKLFGKIFFPNVMDETFFESCG---LADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVY 318 (365)
T ss_pred HHHHHHHHhCCCCCccchhccch---HhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHH
Confidence 9999999997 247776654310 0111111111 11111110111 112455555554 6778887777
Q ss_pred HHHHHcCC--CchhHHHHHHHHHhhccchHHHHHHHhhc
Q 011394 276 QQAADLSV--AAPTIASSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 276 ~~a~~~gv--~~P~~~~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
+.++++++ ++|++.+ + .|.+...++.......++.
T Consensus 319 ~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 319 EVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 67789999 8999875 3 4555555555566555553
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=141.37 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=137.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+||||||+|+||.+|+..|.++|+ +|++|||++++++.+.+.. ++..+.+..+++++ +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 3589999999999999999999885 6999999999988876532 24566788888877 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC--CHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (487)
+ .++.++++++.+.+.++.+||+.-.+.+- ..+.+.+.. ..+.+ -+|... .....|. .+..+. +++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~-~~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKSI--KSTENEFDR-KLKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCC-CCcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHH
Confidence 6 68999999999888888999998887633 345454422 22233 556432 2334566 344432 5667788
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G~~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCCCEEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999642222222211111 34444 5666677777776 56677 99999888874
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=143.31 Aligned_cols=255 Identities=18% Similarity=0.237 Sum_probs=160.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 78887776543110 00 001123445555444 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC----C
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 152 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg----~ 152 (487)
|+. +++++++.+.+.+.++.+||...|+. ...+.+.+.+.+. ++.++++...+...-...+. .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 986 78999999999888888998888875 2233344444322 34445554433211111233 344442 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH---------------------HHHHHHHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 211 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~---------------------~~~~~~~~Ea~~l~ 211 (487)
.+..+.+..+|...+.+ +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34555666667665532 234445677788898888543 34556789999999
Q ss_pred HHhCCCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 212 KSVGKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 212 ~~~g~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
++.| ++. +.+.+.+....... .....++..++.+.+. ..+|.+.. ..++.|+++|+|+|...
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 773 33434333211111 1112223344444321 35677655 47899999999999987
Q ss_pred HH
Q 011394 290 SS 291 (487)
Q Consensus 290 ~a 291 (487)
..
T Consensus 292 ~l 293 (305)
T PRK12921 292 TV 293 (305)
T ss_pred HH
Confidence 53
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=138.91 Aligned_cols=192 Identities=10% Similarity=0.089 Sum_probs=134.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHHH-----HHHHhhhhcCCCCccccC
Q 011394 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKKEGDLPLFGFR 62 (487)
Q Consensus 8 ~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~~~~~~ 62 (487)
|||.|.|+|+- |.+||++|+++||+|++|||++++++ .+.+.| +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 68999999974 88999999999999999999987653 344433 56788
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHH-H--HHcCCeEEe---cCCCC
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA-M--AELGLLYLG---MGVSG 136 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~-l--~~~g~~~i~---~pvsg 136 (487)
++.+++++ +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|....+..+. + ..+.+.... +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988776554 2 233333333 23322
Q ss_pred ChhhhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHH
Q 011394 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (487)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~ 208 (487)
.+. ++..++.| .++|..+++-++.++.+... +.+-..=.+...-|+. ...+...+.+.+-+
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~-------~~~pa~l~~~v~Dm~s-~vta~~~~gil~y~ 219 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKA-------YVVPADVTSAVADMGS-LVTAVALAGVLDYY 219 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHHH-HHHHHHHHHHHHHH
Confidence 211 22223322 27888999999999988752 4333223333333332 33444566666777
Q ss_pred HHHHHhCCCCHH
Q 011394 209 DVLKSVGKLTNE 220 (487)
Q Consensus 209 ~l~~~~g~i~~~ 220 (487)
..+.+.-|.+.+
T Consensus 220 ~~~t~i~~ap~~ 231 (341)
T TIGR01724 220 YVGTQIINAPKE 231 (341)
T ss_pred HHHHHHhcCcHH
Confidence 667665535544
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=150.92 Aligned_cols=271 Identities=10% Similarity=0.024 Sum_probs=168.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHhhhhcC---CC----CccccCCHHHHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKKEG---DL----PLFGFRDPESFV 68 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g---~~----~~~~~~s~~e~~ 68 (487)
||+|||.|+||.+||..|+++| ++|.+|.| +++-.+.+.+...+.. +. +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5555555443322110 00 355677888888
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh--HHH-HHHHHHH---cCCeEEecCCCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TER-REKAMAE---LGLLYLGMGVSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~~-~~~~l~~---~g~~~i~~pvsgg~~~a~ 142 (487)
+. +|+||++||+. .++.+++++.+++.+++++|.++.+.... +.. +.+.+++ ..+.++..|-+. .+-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 99999999985 89999999999998899999998776544 322 2222222 223334444332 23333
Q ss_pred CCC-cc-ccCCC----HHHHHHHHHHHHHHhcc-----------CCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 143 HGP-SL-MPGGS----FEAYKYIEDILLKVAAQ-----------VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 143 ~G~-~i-~~gg~----~~~~~~v~~ll~~ig~~-----------~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
.-+ .+ +.+.+ .+..+.++.+|+.=--+ +...-|+++.++. |....+.+-.|+-.+.+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 344 33 44456 67788888888531111 0001133344332 4444456678999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhccccccccCCCC-chhHHhhhhc--cCCCCchHHHHH----
Q 011394 206 EAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQ---- 276 (487)
Q Consensus 206 Ea~~l~~~~g~i~~~--~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~-~~~l~~i~~~--~~~kgtg~~~~~---- 276 (487)
|+..+++..| -+++ ++..+ .|.++-.+.-..++..+-+..+.. +..++.+.+. .+++-+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 5555 44322 111111000000111111111122 3455666666 677888866664
Q ss_pred HHHHcCCC--chhHHHH
Q 011394 277 QAADLSVA--APTIASS 291 (487)
Q Consensus 277 ~a~~~gv~--~P~~~~a 291 (487)
.++++++. +|++.+.
T Consensus 309 l~~~~~i~~~~Pi~~~v 325 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV 325 (342)
T ss_pred HHHHcCCCcCCCHHHHH
Confidence 57789999 9998753
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=141.16 Aligned_cols=196 Identities=14% Similarity=0.236 Sum_probs=134.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC-----------CCccccCCHHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD-----------LPLFGFRDPESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~~~~~~~s~~e~~ 68 (487)
++||+|||+|.||.++|..|+++|++|++||++++.++++.+... ..+. .+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999987766543210 0000 0345677888877
Q ss_pred hhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC--
Q 011394 69 NSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-- 145 (487)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+.. ++.+.+ .+.-+|+++..+..+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~-~~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEAT-GRPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhc-CCcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 456688888888888886554444322 333333 223345554322211 1223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 146 SLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 146 ~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
-++ .+.++++++.+.++++.+|+.+ +.+.+...|. +.|.+ ....++|++.+.++.. .++++++
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgf----i~nRi---~~~~~~ea~~l~~~g~-a~~~~iD 218 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGY----ILNSL---LVPFLSAALALWAKGV-ADPETID 218 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCH----hHHHH---HHHHHHHHHHHHHcCC-CCHHHHH
Confidence 344 3468999999999999999763 6666545555 34555 3445699999998866 7899999
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 219 ~a~ 221 (287)
T PRK08293 219 KTW 221 (287)
T ss_pred HHH
Confidence 886
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-16 Score=162.94 Aligned_cols=118 Identities=12% Similarity=0.220 Sum_probs=96.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW-DLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 402 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~-~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~ 402 (487)
.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|+++++..++|++.+.....++|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 489999999999999999999999999997532 32 12445566778987 78999999999999884433468889
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHH-hhcCCC
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFD-SYRRER 447 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~-~~~~~~ 447 (487)
.+.+...+++++ ||+|++|+++|+|+|+|++++. ++. ..+.+|
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r 292 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEER 292 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHH
Confidence 888889999999 9999999999999999999996 443 334443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=136.06 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=151.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+.. ++....+..++++. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 679999999999999999999999 78999999999888776642 24456778887776 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhhhcCCC-ccccC--CCHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v 159 (487)
. .+.++++.+.+.+ +++||.++++.+.. .+.+.+ ..+.+++. +|. .+.....+. .++++ ++++..+.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~-~~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLL-GADLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhc-CCCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHH
Confidence 5 7899999888876 57888888876433 333333 23445553 342 222333444 35555 388999999
Q ss_pred HHHHHHHhccCCCCCCeEEEeCCchhhHHHH-hHHH--HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchh
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVK-MIHN--GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLS 236 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K-~v~N--~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s 236 (487)
+.+|+.+|.. +++.++..=+.+- +..+ ++.+.++..+.++ +.+.| +++++..+++..+-.|.
T Consensus 145 ~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~G-l~~~~a~~~~~~~~~g~--- 209 (267)
T PRK11880 145 ENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLG-LPREQARKLAAQTVLGA--- 209 (267)
T ss_pred HHHHHhCCeE--------EEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHHH---
Confidence 9999999963 4554322112211 1111 2333333333333 56677 99999888875433332
Q ss_pred hhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 237 FLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
...+...+ ..+.-+.+.+ ...-|+-.-.++...+.|++-.+..
T Consensus 210 ------~~~~~~~~-~~~~~l~~~v---~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 ------AKLLLESG-EHPAELRDNV---TSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ------HHHHHhcC-CCHHHHHHhC---CCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 22222211 2222223333 3333555555666777788755443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=142.22 Aligned_cols=191 Identities=18% Similarity=0.256 Sum_probs=131.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~~~~~~s~~e~~~ 69 (487)
++||+|||+|.||.++|..|+++|++|++||+++++++.. .+.+.... ..+++.+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5689999999999999999999999999999999987532 22210000 002344556654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhhhcC
Q 011394 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGARH 143 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~a~~ 143 (487)
+ ||+||+|+|+...++ .++.++.+.++++++|+..+++. ..+ .+++.+.. .++||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHH-HHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 4 999999999876655 67788888888888774444333 232 55555522 2445554 34433322
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
++ .+.+++.++.+.++++.+|.. ++++++ ..| .+.|.+. ..+++|++.+.++.- .++++
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g----~i~~Ri~---~~~~~ea~~~~~~gv-~~~~d 213 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APG----FVVNRIL---IPMINEAIFVLAEGV-ATAED 213 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccC----hHHHHHH---HHHHHHHHHHHHhCC-CCHHH
Confidence 33 346899999999999999976 477754 444 3456554 455599999998866 78999
Q ss_pred HHHHH
Q 011394 222 LQNVF 226 (487)
Q Consensus 222 i~~v~ 226 (487)
++.++
T Consensus 214 iD~~~ 218 (282)
T PRK05808 214 IDEGM 218 (282)
T ss_pred HHHHH
Confidence 98886
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-16 Score=160.91 Aligned_cols=117 Identities=13% Similarity=0.216 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHhhCCC-CCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNAD-LANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~-~~~l 399 (487)
.++|||+||+||+|+|++|++++|+|.++++.. + +|. .+|++.|+.| .++|+++++..+++.+.+. ..+.
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999998521 3 555 4556679998 5899999999999987432 3458
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHH-hhcCCCc
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFD-SYRRERL 448 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~-~~~~~~~ 448 (487)
++|.+.+...+|+++ ||++++|+++|+|+|+|++|+. ++. .++.+|.
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~ 286 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRV 286 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHH
Confidence 889999999999999 9999999999999999999996 433 3444443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-14 Score=141.49 Aligned_cols=261 Identities=13% Similarity=0.135 Sum_probs=149.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C-C--CCccccCCHHHHH-hhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G-D--LPLFGFRDPESFV-NSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~~~~~~s~~e~~-~~l~~advIi~ 79 (487)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+... + . .++..++++.+.. .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 5899999999999999999999999999999998888877642110 0 0 0233456666665 34 899999
Q ss_pred ecCCChhHHHHHHHHhh-cccCCCEEEecCCCCchh-----HHHHHHHHHHcCCeEEecCCCCChhhhcCCC-cc-ccCC
Q 011394 80 LVKAGAPVDETIKTLSA-YMEKGDCIIDGGNEWYEN-----TERREKAMAELGLLYLGMGVSGGEEGARHGP-SL-MPGG 151 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i-~~gg 151 (487)
+||+. +++++++++.+ .+.++..||.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+ +.|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99985 79999999998 887777777777776332 2222222222222222233211 12333344 33 3444
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHh
Q 011394 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N-----------------~~~~~~~~~~~Ea~~l~~~~ 214 (487)
+.+..+.+..+|+.-+-+ +...-+.-...+.|++-| .....+.+++.|+..+++..
T Consensus 156 ~~~~~~~l~~~l~~~~~~-------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NETLGSSLISKLSNENLK-------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CHHHHHHHHHHHCCCCeE-------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 555445555555432222 122222333334444433 44455678899999999998
Q ss_pred CCC--CHHHHH------HHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCch----HHHHHHHHHcC
Q 011394 215 GKL--TNEELQ------NVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTG----KWTVQQAADLS 282 (487)
Q Consensus 215 g~i--~~~~i~------~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg----~~~~~~a~~~g 282 (487)
| . +++++. +++........+++-+... +..+..++.+.+.....-+| ....+.++++|
T Consensus 229 G-~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---------l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~ 298 (326)
T PRK14620 229 N-GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---------IGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLN 298 (326)
T ss_pred C-CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---------HHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhC
Confidence 8 5 777773 3332111111111111100 01112233332221111122 35778999999
Q ss_pred CCchhHHH
Q 011394 283 VAAPTIAS 290 (487)
Q Consensus 283 v~~P~~~~ 290 (487)
+++|+...
T Consensus 299 i~~P~~~~ 306 (326)
T PRK14620 299 IELPICES 306 (326)
T ss_pred CCCCHHHH
Confidence 99999875
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=142.42 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=123.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
...+++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|+
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiav 74 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCV 74 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECC
Confidence 3445799999999999999999999995 89999999998877665432 12345567777665 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChh-hhc-------CCC-ccc---
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GAR-------HGP-SLM--- 148 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~-~a~-------~G~-~i~--- 148 (487)
|.. ....++.++.+.+.++.+|+|.++......+...+.+ ..+++|+++ |+.|++. +.. .|. .++
T Consensus 75 p~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~ 152 (307)
T PRK07502 75 PVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPP 152 (307)
T ss_pred CHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCC
Confidence 986 5778888888888999999999888755544443332 347789987 9887642 222 233 222
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhH
Q 011394 149 PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~ 187 (487)
.+++++.++.++++++.+|.+ ++++++.....
T Consensus 153 ~~~~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD~ 184 (307)
T PRK07502 153 EGTDPAAVARLTAFWRALGAR-------VEEMDPEHHDL 184 (307)
T ss_pred CCCCHHHHHHHHHHHHHcCCE-------EEEcCHHHHhH
Confidence 356888999999999999976 46776644333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=138.25 Aligned_cols=254 Identities=15% Similarity=0.213 Sum_probs=150.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh--cCC--CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK--EGD--LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~g~--~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .+. .++...++++++ . .+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877654321 000 001223445544 4 39999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC---CHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 155 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg---~~~~ 155 (487)
. +++.+++.+.+.+.++.+||...|+.. ..+.+.+.+... ++.++.+-..+...-...+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999888888998888752 223333333221 11122221111100011122 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~~~~Ea~~l~~~~ 214 (487)
.+.+.++|+..+.+ +...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLD-------VEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCC-------CCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 56666777665533 1222234555556665552 3344567789999999998
Q ss_pred CCCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 215 GKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 215 g~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
| ++. +.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 663 3444433322111111 11223334433321 24555543 578999999999998764
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=131.96 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=97.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh---------------hhhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|++|.++|..|+++||+|++||.++++++.+.+. ....+ ++..+++.++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 799999999999999999999999999999999998776531 11111 56788888887877
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHH-HHHcC-----CeEEecCCCCC
Q 011394 73 KPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA-MAELG-----LLYLGMGVSGG 137 (487)
Q Consensus 73 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~-l~~~g-----~~~i~~pvsgg 137 (487)
+|++|+|||++ ..++++++.+.+.++++++||..||..|.+++++... +++.+ +++.-+|-+-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999876 2477888999999999999999999999999966544 44333 35556674333
Q ss_pred hhhh----cCCCccccCCCHHHHH-HHHH
Q 011394 138 EEGA----RHGPSLMPGGSFEAYK-YIED 161 (487)
Q Consensus 138 ~~~a----~~G~~i~~gg~~~~~~-~v~~ 161 (487)
+-.+ ++-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2211 1222566666544433 5554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=133.03 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=137.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
||||||||.|+||.+|+..|.++| .+|++.||++++.+.+.++.. +..+++..+++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 579999999999999999999999 699999999999887766542 3346777888887 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccC--CCHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~ 158 (487)
+ +.+.+++.++.+ ..++++||....+.+. ..+.+.+. +.+++ -+|... .....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~~--~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVSI--ETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCCH--HHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHH
Confidence 7 589999999988 7899999998877633 34444443 34444 456432 2333565 34443 37788889
Q ss_pred HHHHHHHHhccCCCCCCeEEEeC-CchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G-~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
+..||+.+|......|..+-.+. -.|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 144 v~~l~~~~G~v~~v~E~~~da~TaisGSgP-------Ayv~~~iEal~~a---gv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGKVVEVEESLMDAVTALSGSGP-------AYVFLFIEALADA---GVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCCeEEechHHhhHHHHHhcCCH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999974322222222221 145555 4555566565555 56777 99999888763
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=138.85 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=132.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-...+++++++++ +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433222100 01234566777766 99999999985 78
Q ss_pred HHHHHHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChh-h-------hcCCC-ccccC---CCH
Q 011394 88 DETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 153 (487)
Q Consensus 88 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~-~-------a~~G~-~i~~g---g~~ 153 (487)
..++.++.+ .+.++.+|+|.+++.........+. ...+..|++ .|+.|++. + ...|. .+++. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4788999999999886555444333 345678997 58888642 1 12344 33332 578
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+.++.++++++.+|+. ++++.+......+-++... -.++++++ +...+ .+.+....
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vshl-----Ph~ia~al--~~~~~-~~~~~~~~ 208 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVSHL-----PHILASSL--AARLA-GEHPLALR 208 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhccH-----HHHHHHHH--HHhhc-cCchHHHh
Confidence 8999999999999976 4677765544444443332 23344443 45555 55544433
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=134.89 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHH-------HHHHHHh-------hhhcCCC----------CccccCC--HHHHHhhc
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKKEGDL----------PLFGFRD--PESFVNSI 71 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~~-------~~~~g~~----------~~~~~~s--~~e~~~~l 71 (487)
||..||..++.+|++|.+||++++. ++...+. ....|.. +++.+.+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 1111111 0000000 3444443 5566666
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEecC-------CCCChh
Q 011394 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLGMG-------VSGGEE 139 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~p-------vsgg~~ 139 (487)
||+||.|||++.+++..+ .++.+.++++.|| +||+++....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888766 6777888888888 55555556667777662 3488999888 55443
Q ss_pred hhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 140 GARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 140 ~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
++++++++++.++++.+|+. ++++++.+ |+ +.|. .....++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~-------~v~v~d~~-Gf----i~nr---i~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKV-------PVVCGPSP-GY----IVPR---IQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCc-------EEEecCCC-Cc----chHH---HHHHHHHHHHHHHHhCC-CCH
Confidence 46899999999999999976 47888754 43 2333 46677899999999988 999
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
+++.+++.
T Consensus 209 e~iD~a~~ 216 (314)
T PRK08269 209 EDIDKAIR 216 (314)
T ss_pred HHHHHHHH
Confidence 99999873
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=127.32 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=133.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ....+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 578999999999999999999998 7999999864 44555443221 13345677887776 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccC--CCHHHHH
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYK 157 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~~~~ 157 (487)
|+. .+.++++++.+.+.++.+||...++.... ++.+.+. +..++ -+|... .....|. .+..+ -+++..+
T Consensus 73 pp~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~--~~~vvR~MPN~~--~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PPL-AVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITP--GLQVSRLIPSLT--SAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcC--CCCEEEEeCccH--HHHhhhcEEEecCCCCCHHHHH
Confidence 964 78999999998888888999988876433 4444442 12333 456432 2334566 34443 2567788
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 158 YIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 158 ~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
.++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.||+++++..++..
T Consensus 146 ~v~~l~~~~G~~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 146 RLEETLSHFSHVMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHhCCCEEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHH
Confidence 9999999999754333333322222 46665 4455555555555 45553499999888764
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=130.75 Aligned_cols=255 Identities=14% Similarity=0.147 Sum_probs=153.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEE
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~~~~~~s~~e~~~~l~~advI 77 (487)
+..|+|+|||+|.||..+|..|+++|++|+++.|++. +.+.+.+... +.. .+...+++++ .. .+|+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~~D~v 76 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP---PCDWV 76 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-cC---CCCEE
Confidence 3457999999999999999999999999999999863 3344332110 000 0112223332 23 38999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-Chhh-hcCCCccc--c
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEG-ARHGPSLM--P 149 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsg-g~~~-a~~G~~i~--~ 149 (487)
|+|||.. ++.++++.+.+.+.++.+|+...|+. ...+.+.+.+.+. |+.++++...+ |... ...|...+ .
T Consensus 77 ilavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 77 LVGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999987 67888888989888888899888876 3333444444322 33344443322 1111 11223211 1
Q ss_pred CC-C-----HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHH
Q 011394 150 GG-S-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQ 202 (487)
Q Consensus 150 gg-~-----~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~ 202 (487)
.+ + .+..+.+..+|+..+-. +....+.-...+.|++.|. .......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~ 227 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGID-------SQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRA 227 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCC-------ceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHH
Confidence 22 2 35566677777776643 2334445666666766552 2345666
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHH
Q 011394 203 LIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 280 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~--~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~ 280 (487)
++.|++.++++.| ++ .+.+..+++...... ....++..++.+.+. ..+|.+.. +.++.|++
T Consensus 228 ~~~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~ 290 (313)
T PRK06249 228 LMAEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARA 290 (313)
T ss_pred HHHHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHH
Confidence 7899999999998 76 222333332211111 112233344443322 36777765 58999999
Q ss_pred cCCCchhHHHH
Q 011394 281 LSVAAPTIASS 291 (487)
Q Consensus 281 ~gv~~P~~~~a 291 (487)
+|+|+|+....
T Consensus 291 ~Gi~~P~~~~l 301 (313)
T PRK06249 291 AGCAMPRVEML 301 (313)
T ss_pred hCCCCcHHHHH
Confidence 99999987653
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=125.32 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=130.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---c-EEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|||+|.||.+++..|+++|+ + |++++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 778887 477777776543 24556788888876 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccc--cCCCHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLM--PGGSFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~--~gg~~~~~~~ 158 (487)
+. ..+++++++.+.++ +++||+++.+..... +.+.+. .+..++ .+|-.. .....|. .+. ..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78899988888775 679999988864443 333332 222333 456332 2233454 332 3468888999
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCC--chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVSK--GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G~--~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
++++|+.+|... ++.+ .-..+.+--+..++.+.++..+.++ +.+.| +++++..+++.
T Consensus 149 v~~lf~~~G~~~--------~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~ 207 (245)
T PRK07634 149 LQLILKGIGTSQ--------LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVI 207 (245)
T ss_pred HHHHHHhCCCEE--------EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999742 3322 1122222223334555666666666 67778 99999888874
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-12 Score=125.39 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=114.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++....+.++++.. .+|+||+|+|..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~~~------gv~~~~~~~e~~~~--~aDvVilavp~~ 103 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAAEL------GVSFFRDPDDFCEE--HPDVVLLCTSIL 103 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHHHc------CCeeeCCHHHHhhC--CCCEEEEecCHH
Confidence 34579999999999999999999999999999999642 222211 24456778877531 289999999975
Q ss_pred hhHHHHHHHH-hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhh--hcCCCcc-cc-------CCC
Q 011394 85 APVDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGPSL-MP-------GGS 152 (487)
Q Consensus 85 ~~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~--a~~G~~i-~~-------gg~ 152 (487)
.+.+++.++ .+.+.++.+|+|.+++.-...+.+.+.+ ..+..|+.+ |+.|.+.+ ...+..+ .. +.+
T Consensus 104 -~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l-~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~ 181 (304)
T PLN02256 104 -STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVL-PEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGER 181 (304)
T ss_pred -HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhC-CCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCC
Confidence 788889888 6778899999999997644444444333 235678854 88877643 2233322 22 236
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCC
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK 182 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~ 182 (487)
++.++.++++++.+|++ ++.+.+
T Consensus 182 ~~~~~~l~~l~~~lGa~-------v~~~~~ 204 (304)
T PLN02256 182 EARCERFLDIFEEEGCR-------MVEMSC 204 (304)
T ss_pred HHHHHHHHHHHHHCCCE-------EEEeCH
Confidence 78899999999999987 366654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=125.14 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=110.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCH-HHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP-ESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~-~e~~~~l~~advIi~~vp~~ 84 (487)
.+++|+|+|+|.||..+|+.|.++|+.|.+++++.............. ....+.+. .+.+. ++|+||++||-.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv---~d~~~~~~~~~~~~---~aD~VivavPi~ 75 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV---IDELTVAGLAEAAA---EADLVIVAVPIE 75 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc---ccccccchhhhhcc---cCCEEEEeccHH
Confidence 467999999999999999999999999977766655433222221100 01111222 33333 389999999986
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCh--hhhcCCC-c-cccCC--CHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE--EGARHGP-S-LMPGG--SFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~--~~a~~G~-~-i~~gg--~~~~~~ 157 (487)
++..+++++.+.+++|.+|+|.++..-...+...+...+.. +|++. |++|.+ .....+. . ++++. +.+.++
T Consensus 76 -~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~ 153 (279)
T COG0287 76 -ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVE 153 (279)
T ss_pred -HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHH
Confidence 78999999999999999999999998665555544443334 89976 888873 3334555 3 34443 467889
Q ss_pred HHHHHHHHHhcc
Q 011394 158 YIEDILLKVAAQ 169 (487)
Q Consensus 158 ~v~~ll~~ig~~ 169 (487)
.+..+++.+|++
T Consensus 154 ~~~~~~~~~ga~ 165 (279)
T COG0287 154 EVKRLWEALGAR 165 (279)
T ss_pred HHHHHHHHcCCE
Confidence 999999999987
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=109.40 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=77.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||||||.|+||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 7999999999999999999999 999955 999999999887653 34445 78999998 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
. ++.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 899999999 77889999999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=122.82 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=110.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C--CCCcc-ccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G--DLPLF-GFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g--~~~~~-~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+||| +|.||..++..|+++|++|.+++|++++++.+.+..... + +.... ...+..+.++. +|+||+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 999999999999999999999999999988776542110 0 00011 12355666666 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh---------------HHHHHHHHHHcCCeEEec-CCCCCh----hhhc
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---------------TERREKAMAELGLLYLGM-GVSGGE----EGAR 142 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~i~~-pvsgg~----~~a~ 142 (487)
.. ++.++++++.+.+. +++|||+++..+.+ ++.+++.+.. +.+++-+ |..... ....
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCC
Confidence 75 68888888877664 58999999886541 1223333321 1344432 322111 1111
Q ss_pred CCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCeEEEeCCchhh
Q 011394 143 HGP-SLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSG 186 (487)
Q Consensus 143 ~G~-~i~~gg~~~~~~~v~~ll~~i-g~~~~~~~~~~~~~G~~G~g 186 (487)
.+. .+++|.++++.+.+..|.+.+ |..+ +.+|+.-.+
T Consensus 155 ~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~a 193 (219)
T TIGR01915 155 VDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLENA 193 (219)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhhH
Confidence 233 456676788889999999999 8764 777764333
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-12 Score=138.03 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=112.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..|+|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~~- 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSIL- 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCChH-
Confidence 4579999999999999999999999999999999653 333222 24456788887652 289999999974
Q ss_pred hHHHHHHHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCC---Cc-----cccCCCHHH
Q 011394 86 PVDETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHG---PS-----LMPGGSFEA 155 (487)
Q Consensus 86 ~v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G---~~-----i~~gg~~~~ 155 (487)
.+..+++++.. .+++|.+|+|++++. ....+..+.+...+..|+ .+|++|.+.+ ..| .. .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78888888775 578899999999987 333344444445577888 7799988754 233 11 234455544
Q ss_pred H---HHHHHHHHHHhccCCCCCCeEEEeCC
Q 011394 156 Y---KYIEDILLKVAAQVPDSGPCVTYVSK 182 (487)
Q Consensus 156 ~---~~v~~ll~~ig~~~~~~~~~~~~~G~ 182 (487)
. +.+..+++.+|++ ++.+.+
T Consensus 515 ~~~~~~l~~l~~~lGa~-------vv~ms~ 537 (667)
T PLN02712 515 VSRCDSFLDIFAREGCR-------MVEMSC 537 (667)
T ss_pred HHHHHHHHHHHHHcCCE-------EEEeCH
Confidence 4 4455888888876 466654
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=124.94 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=126.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~~ 69 (487)
.++|||||.|.||..+|..++..||+|.++|++++.+++...... ..|.. +++.++++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 468999999999999999999988999999999876544322111 00100 3344444442
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcCC
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHG 144 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~G 144 (487)
+++||+||.+|+....++.-+ .++....+++.|+-..+++.|.+ ++++.+.. -|.||+..|...--.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 344999999999998887554 66666666666655444433332 34444421 167777654211100
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 145 PSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 145 ~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
-++.| .++++++.+.++.+.+++. | .+...-.|. +.|.+ ....+.|++.+..+.. .+++++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~igK~-----~---vv~~D~pGF----i~NRi---l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIGKT-----P---VVVKDVPGF----IVNRL---LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCC-----C---EeecCCCce----ehHhH---HHHHHHHHHHHHHhCC-CCHHHH
Confidence 13444 2789999999999999953 1 233334444 44554 4556699999999887 999999
Q ss_pred HHHHH
Q 011394 223 QNVFT 227 (487)
Q Consensus 223 ~~v~~ 227 (487)
..++.
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99874
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=118.33 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=109.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||+|+|+|.|+||.++|++|++.||+|++-+|+.+ +.+...+.... . ....+++++++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~-i~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----L-ITGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----c-cccCChHHHHhc---CCEEEEeccHH-
Confidence 68999999999999999999999999999966544 44444433221 2 234577788887 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCc---h------------hHHHHHHHHHHc----CCeEEecCCCCChhhhcC-CC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWY---E------------NTERREKAMAEL----GLLYLGMGVSGGEEGARH-GP 145 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~---~------------~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~-G~ 145 (487)
.+..++.++...+. |+||||+++..+ . .++.+++.+... .++-+.+...-. .+.. +.
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~--~~~~~~~ 148 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLAD--LAKPGGR 148 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhcc--CCCcCCc
Confidence 78888888888775 999999999621 1 122222222111 223333322211 1112 33
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhH
Q 011394 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (487)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~ 187 (487)
.+++|.|.++.+.+.+|.+.+|-.. +-+|+...+.
T Consensus 149 ~~v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a~ 185 (211)
T COG2085 149 RDVLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENAR 185 (211)
T ss_pred eeEEEecCcHHHHHHHHHHHHhcCcce-------eecccccccc
Confidence 5667778899999999999998763 6667644333
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=118.37 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=121.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+|+||.+|+..|.+++. +|+++||++++. + ...+.++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-------~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-------FVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-------eEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999873 499999987542 1 2345677787776 9999999996
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCCc-cccC--CCHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGPS-LMPG--GSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~~-i~~g--g~~~~~~~v 159 (487)
. ++++++.++.+++.++.+|.++++..... +.+.+.. ....+ -+|- -+.....|.+ +..+ .+++..+.+
T Consensus 68 ~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~-~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v 140 (260)
T PTZ00431 68 D-LAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGV-EAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKV 140 (260)
T ss_pred H-HHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCC-CCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHH
Confidence 4 89999999998886655666666554322 2222221 11121 2231 1222334553 3333 256778899
Q ss_pred HHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
+.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 141 ~~l~~~~G~~~~v~E~~~d~~ta~~gsgP-------A~~~~~~~al~~~---~v~~G-l~~~~a~~l~~ 198 (260)
T PTZ00431 141 IDIFSACGIIQEIKEKDMDIATAISGCGP-------AYVFLFIESLIDA---GVKNG-LNRDVSKNLVL 198 (260)
T ss_pred HHHHHhCCcEEEEChHHcchhhhhcCCHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999643222222222211 34444 5666777777777 56778 99999888874
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=112.28 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=87.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-cccccCCCCchhHHhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 262 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~-l~~~~~~~~~~~l~~i~ 262 (487)
|+|+.+|+++|.+...++.+++|++.++++.| +|++++.+++ +.+.+.|+.++...+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788889999888763 444 4688999999999
Q ss_pred hccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 263 DKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 263 ~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
||+. ++++.|.+.|+|+|+...+ .+.+..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9997 9999999999999998865 5555443
|
... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=120.37 Aligned_cols=194 Identities=14% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|+||.++|++|.+.|++|.+++++.++........ ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 35899999999999999999999999999988766554443322 2333 388888887 99999999986 4
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh-----hcCCC-ccc-cCCC--HHH
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG-----ARHGP-SLM-PGGS--FEA 155 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~-----a~~G~-~i~-~gg~--~~~ 155 (487)
...++ +++.+.+++|++|+.++...... .+.....++..+ -+|-..+..- ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999986665533111 111122344444 4575555411 12454 444 5554 788
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCc---hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKG---GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~---G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.+.+..+++.+|.....--+..+ -.+. =-|..+ .+-.+...++..++.++...| ++|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~ttf-~~e~~~dl~geq~-----vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIETTF-KEETETDLFGEQA-----VLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccceeeeee-cccccccchhhHH-----HHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 99999999999975310000000 0000 001111 233346677888899999999 999864
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=135.55 Aligned_cols=118 Identities=16% Similarity=0.302 Sum_probs=98.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHhhCC-CCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNA-DLANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---w~~Gcii~s~ll~~~~~~~~~~~-~~~~l 399 (487)
.+++|++||+||+++|+.|++++|+|.+++++ .++|..++.++ |+.| ..+|+++++...++..++ .-+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 48999999999999999999999999999863 24898887777 9988 689999999888876543 22256
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++|...++..+|++| ||++..|.++|+|+|+|++++. |.++++.+|..
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 777778888889999 9999999999999999999995 66777776554
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=122.88 Aligned_cols=255 Identities=12% Similarity=0.082 Sum_probs=149.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hh---cCCC-Cccc-cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KK---EGDL-PLFG-FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~~~~-~~s~~e~~~~l~~advIi~~ 80 (487)
.|||+|||+|.||.-+|..|+++|++|++++|.+++++.+.+.+ -. .+.. .... ..+.++ +...|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~----~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA----AEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc----ccccCEEEEE
Confidence 47999999999999999999999999999999988888776542 10 0000 0011 111111 2238999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-ChhhhcCCC-ccccCC-CH
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 153 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsg-g~~~a~~G~-~i~~gg-~~ 153 (487)
++.. +++++++.+.+.+.++.+|+-.-|+... .+.+.+.+... |+.++++-.-+ |.. ...|. .+..|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9986 6888999999999999999999888732 23343433221 22222221111 110 01122 222332 22
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhC
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~------------------~~~~~~~~Ea~~l~~~~g 215 (487)
+..+.+.++|..-+.+ +.+..+.-...+.|++.|... ..+..++.|++.++++.|
T Consensus 155 ~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 155 PTAPAWLDDLREAGIP-------HEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred cchHHHHHHHHhcCCC-------CccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 3345566666654432 122333555667777766421 134677899999999998
Q ss_pred CCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 216 KLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 216 ~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
++. +.+.+.+........ ....++..++.+.+. ..+|.+.. ..++.|+++|+|+|.....
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 -QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred -CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 762 223333221111111 111233344444322 35666654 5789999999999987753
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=114.82 Aligned_cols=99 Identities=22% Similarity=0.411 Sum_probs=81.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+...... + .++..++++++++++ +|+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 7999999999999999999999999999999999998887554210 0 146678899999887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.. ..+++++++.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 985 78999999999999999999998776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=135.44 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=131.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|++||++++.++...+.. ...+. .+++++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF- 390 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 346899999999999999999999999999999998765432211 11100 045666666543
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.++|...+++. ++.++.+.++++.|+...|++.|.+ ++++.+... |.||+..| .+.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV---- 461 (715)
T PRK11730 391 ER---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (715)
T ss_pred cC---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE----
Confidence 43 9999999999877774 4578888887877776555554433 344444321 55665443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-|+.| .++++++.+..+++.+|+.+ +.+. ...|. +.|.+... .+.|++.+.+ .| .+++
T Consensus 462 ---Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pGf----v~nRi~~~---~~~ea~~lv~-~G-a~~e 521 (715)
T PRK11730 462 ---EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPGF----FVNRVLFP---YFAGFSQLLR-DG-ADFR 521 (715)
T ss_pred ---EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCch----hHHHHHHH---HHHHHHHHHH-cC-CCHH
Confidence 24555 37899999999999999763 5554 34454 55666444 4589998876 46 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 522 ~ID~a~~ 528 (715)
T PRK11730 522 QIDKVME 528 (715)
T ss_pred HHHHHHH
Confidence 9999874
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=134.49 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=132.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+.. +++.+.+.+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF- 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 4568999999999999999999999999999999987665432210 11000 45556666443
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.+||....++ +++.++.+.++++.|+...|++.+.+ +++..+.. .|.||+..| ++.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv---- 461 (714)
T TIGR02437 391 DN---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (714)
T ss_pred cC---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE----
Confidence 43 999999999987777 45578888888887776655554333 34444432 155666443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-|+.| .++++++.+..+++.+++.+ +.+.+ ..|. +.|.+... .+.|++.+.+ .| .+++
T Consensus 462 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGf----i~NRl~~~---~~~ea~~l~~-eG-~~~~ 521 (714)
T TIGR02437 462 ---EVIRGEKSSDETIATVVAYASKMGKTP-------IVVND-CPGF----FVNRVLFP---YFGGFSKLLR-DG-ADFV 521 (714)
T ss_pred ---eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeCC-cccc----hHHHHHHH---HHHHHHHHHH-CC-CCHH
Confidence 14444 37899999999999999763 55653 4554 55776444 4599999986 46 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 522 ~ID~a~~ 528 (714)
T TIGR02437 522 RIDKVME 528 (714)
T ss_pred HHHHHHH
Confidence 9999874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=135.93 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=132.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+.. +++.+++.+++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF- 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 3468999999999999999999999999999999988665432211 00000 45666666543
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.+|+....++. ++.++.+.++++.|+...|++.+. .++++.+.. -|.||+..| ++.-.
T Consensus 413 ~~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~ig~Hff~P~~~m~Lv---- 483 (737)
T TIGR02441 413 KN---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI--KDIAAVSSRPEKVIGMHYFSPVDKMQLL---- 483 (737)
T ss_pred cc---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCccceEEEeccCCcccCceE----
Confidence 33 9999999999887774 457888888888777655544433 344444432 155666443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-++.| .++++++.+..+++.+++.+ +.+++ ..|. +.|.+. ...+.|++.+.++ | ++++
T Consensus 484 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGF----i~NRi~---~~~~~ea~~lv~e-G-v~~~ 543 (737)
T TIGR02441 484 ---EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPGF----YTTRCL---GPMLAEVIRLLQE-G-VDPK 543 (737)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCCc----hHHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 24444 47899999999999999763 56654 4454 556654 4556999999864 6 8999
Q ss_pred HHHHHHHh
Q 011394 221 ELQNVFTE 228 (487)
Q Consensus 221 ~i~~v~~~ 228 (487)
+++.++..
T Consensus 544 ~ID~a~~~ 551 (737)
T TIGR02441 544 KLDKLTTK 551 (737)
T ss_pred HHHHHHHH
Confidence 99998643
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-11 Score=133.80 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=116.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.+.. .....+..++++. +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 68999999999999999999999 4899999999987776543321 1134566676665 99999999975
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh--------hcCCC-c-ccc--CCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG--------ARHGP-S-LMP--GGS 152 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~--------a~~G~-~-i~~--gg~ 152 (487)
.+.++++.+.+.++++.+|+|++++.......+.+.+....++|+ +.|++|++.. ...+. . +.+ +++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 789999999998889999999999886666666555544467777 5688877531 11233 2 333 357
Q ss_pred HHHHHHHHHHHHHHhcc
Q 011394 153 FEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~ 169 (487)
++.++.++++|+.+|.+
T Consensus 155 ~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 155 PAALARVDRLWRAVGAD 171 (735)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 88899999999999975
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=132.73 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~ 67 (487)
.+++|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. .+++.++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 3568999999999999999998 58999999999998655433211 00000 04556666654
Q ss_pred HhhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCC-CChhhh
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVS-GGEEGA 141 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvs-gg~~~a 141 (487)
+++ ||+||.++|...+++. ++.++.+.++++.|+...|++.+.+ ++++.+... |.||+..|-. .-.
T Consensus 382 ~~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV--- 453 (699)
T TIGR02440 382 FKD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV--- 453 (699)
T ss_pred hcc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE---
Confidence 343 9999999999877774 5577878887777776555544332 344444321 5566644311 111
Q ss_pred cCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 142 RHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 142 ~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
-|+.| .++++++.+..+++.+|+.+ +.+.+ ..|. +.|.+.. ..+.|++.+.+ .| +++
T Consensus 454 ----Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~d-~pGf----i~nRl~~---~~~~Ea~~l~~-~G-~~~ 512 (699)
T TIGR02440 454 ----EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVAD-KAGF----YVNRILA---PYMNEAARLLL-EG-EPV 512 (699)
T ss_pred ----EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEcc-ccch----HHHHHHH---HHHHHHHHHHH-CC-CCH
Confidence 24544 37899999999999999763 55643 4554 4566544 45699999887 56 899
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
++++.++.
T Consensus 513 ~dID~a~~ 520 (699)
T TIGR02440 513 EHIDKALV 520 (699)
T ss_pred HHHHHHHH
Confidence 99998874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-12 Score=116.01 Aligned_cols=147 Identities=16% Similarity=0.309 Sum_probs=95.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cCCC----------CccccCCHHHHHhhc
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGDL----------PLFGFRDPESFVNSI 71 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~~----------~~~~~~s~~e~~~~l 71 (487)
||+|||+|.||..+|..++.+|++|.+||++++.++...+.... .+.. ++..++++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876554332111 0100 466778888887 4
Q ss_pred CCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecCCCCChhhhcCCC-
Q 011394 72 QKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~pvsgg~~~a~~G~- 145 (487)
+|+||.++|....++. ++.++.+.++++.++...|++.+. .+++..+.. + |+||+..|-. -+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~--------~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHL--------MPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT----------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEeccccccc--------Cce
Confidence 9999999999877764 457788888888887766666533 334443321 1 5666654311 11
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhcc
Q 011394 146 -SLMPG--GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 146 -~i~~g--g~~~~~~~v~~ll~~ig~~ 169 (487)
-++.| .++++++.+..+++.+|+.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 24554 3789999999999999875
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-12 Score=111.42 Aligned_cols=111 Identities=17% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH
Confidence 357999999999999999999999999975 5899888777765432 1344566777766 99999999997
Q ss_pred hhHHHHHHHHhhc--ccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAY--MEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
++..+.++|... ..+|++|+++|...+.+..+ .+.++|...
T Consensus 80 -aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~---p~~~~Ga~~ 122 (127)
T PF10727_consen 80 -AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLA---PARERGAIV 122 (127)
T ss_dssp -HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGH---HHHHTT-EE
T ss_pred -HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhh---hHHHCCCeE
Confidence 899999999987 78999999999987665443 345566544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-11 Score=119.73 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=104.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.++|+|||+ |.||..+|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999964 899999998511 23466777776 99999999975
Q ss_pred hhHHHHHHHHhhc---ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChh-hhcCCC-ccc-cCCCHHHHH
Q 011394 85 APVDETIKTLSAY---MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~-~a~~G~-~i~-~gg~~~~~~ 157 (487)
.+.++++++.+. ++++.+|+|.++++....+. +.+.+..|++. |++|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~----~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA----MLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH----HHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899888875 78999999999987433332 23446679976 8888754 334566 444 444556678
Q ss_pred HHHHHHHHHhcc
Q 011394 158 YIEDILLKVAAQ 169 (487)
Q Consensus 158 ~v~~ll~~ig~~ 169 (487)
.++.+++.+|++
T Consensus 138 ~v~~l~~~~Ga~ 149 (370)
T PRK08818 138 WVQSLCSALQAE 149 (370)
T ss_pred HHHHHHHHcCCE
Confidence 899999999987
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=127.39 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=107.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~- 119 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII- 119 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-
Confidence 3579999999999999999999999999999998554 222222 24556788886531 289999999974
Q ss_pred hHHHHHHHHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhh--hcCCC-cccc----CCCH---
Q 011394 86 PVDETIKTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF--- 153 (487)
Q Consensus 86 ~v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~--a~~G~-~i~~----gg~~--- 153 (487)
.+..+++++. +.++++.+|+|++++.......+... ...+..|+.. |+.|.+.. ...+. .++. +.+.
T Consensus 120 ~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~-l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~ 198 (667)
T PLN02712 120 STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDY-LPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRV 198 (667)
T ss_pred HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHh-cCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccH
Confidence 7888998875 67888999999998874333333332 2346778854 88877631 22333 3333 2222
Q ss_pred HHHHHHHHHHHHHhccC
Q 011394 154 EAYKYIEDILLKVAAQV 170 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~ 170 (487)
+.++.+.++++.+|+++
T Consensus 199 ~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 199 SRCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 34566779999999873
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-11 Score=131.45 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=130.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~ 67 (487)
...+|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. .+++.+++.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG- 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence 3568999999999999999999 88999999999988655432211 00000 04556666643
Q ss_pred HhhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhc
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGAR 142 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~ 142 (487)
+++ ||+||.++|....++. ++.++.+.++++.|+...|++.+.+ ++++.+... |.||+..|-.-
T Consensus 387 ~~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~------ 455 (708)
T PRK11154 387 FKH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKM------ 455 (708)
T ss_pred hcc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccC------
Confidence 344 9999999999877764 4578888888888877665555433 344444321 45555433110
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
.-.-|+.| .++++++.+..+++.+|+.+ +.+.+ ..|. +.|.+. ...++|++.++++ | ++++
T Consensus 456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~d-~pGf----i~nRl~---~~~~~EA~~lv~e-G-v~~~ 518 (708)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTP-------IVVRD-GAGF----YVNRIL---APYINEAARLLLE-G-EPIE 518 (708)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEec-cCcH----HHHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 00024554 37899999999999999763 55543 4454 445554 4555999999886 6 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 519 dID~a~~ 525 (708)
T PRK11154 519 HIDAALV 525 (708)
T ss_pred HHHHHHH
Confidence 9998864
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=114.54 Aligned_cols=257 Identities=17% Similarity=0.195 Sum_probs=159.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCC-----ccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLP-----LFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~-----~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+-..- ..+ ...+.+.+. . ..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~-~---~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEA-L---GPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhh-c---CCCCEEEEEe
Confidence 6899999999999999999999999999999876 777776542110 001 111122222 2 2399999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCC--hhhhcCCC-c--cccCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGG--EEGARHGP-S--LMPGGS 152 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg--~~~a~~G~-~--i~~gg~ 152 (487)
++. ++++++..+.+.+.+.+.|+..-|+.. ..+.+.+.+... |+.++++--.+. ......|. . .+.|+.
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLG-HEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCc-HHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 987 799999999999999999998888873 333444444332 222222221111 11111233 1 234556
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHH---------------------HHHHHHHHHHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N---------------------~~~~~~~~~~~Ea~~l~ 211 (487)
++.++.+.++|+.-+.+. .+..+.-...+.|++.| .......+++.|...++
T Consensus 154 ~~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 154 DELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred hHHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 677888888887666542 33344666677777666 34445667889999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 212 KSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 212 ~~~g~i~--~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
.+.| +. .+.+.+++........ ....++..+..+.+. -.+|.+.. ..++.|+++|+++|+..
T Consensus 227 ~~~g-~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 227 RAEG-VELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVND 290 (307)
T ss_pred Hhcc-CCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHH
Confidence 9887 55 3223333322222211 111122333333221 35677755 47899999999999977
Q ss_pred HHHHHH
Q 011394 290 SSLDAR 295 (487)
Q Consensus 290 ~a~~~r 295 (487)
. ++..
T Consensus 291 ~-L~~l 295 (307)
T COG1893 291 T-LYAL 295 (307)
T ss_pred H-HHHH
Confidence 5 3443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-10 Score=110.98 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=99.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|+||.++|++|.++|++|+++++. +++.+.+.+.+ +.. .++.++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 44555544322 333 457888877 9999999998656
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh---h--cCCC-ccc-cC--CCHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG---A--RHGP-SLM-PG--GSFEAY 156 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~---a--~~G~-~i~-~g--g~~~~~ 156 (487)
...+++++.+.+.++. +|..+.+..- ......+ ..+...+ -||-..+..- - ..|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6767778888888776 5555555422 2222222 2344444 6776655420 0 2454 443 33 366778
Q ss_pred HHHHHHHHHHhcc
Q 011394 157 KYIEDILLKVAAQ 169 (487)
Q Consensus 157 ~~v~~ll~~ig~~ 169 (487)
+.+..+++.+|..
T Consensus 149 ~~~~~~~~~iG~~ 161 (314)
T TIGR00465 149 AIALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHHHcCCC
Confidence 8999999999964
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-09 Score=99.46 Aligned_cols=246 Identities=14% Similarity=0.169 Sum_probs=169.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHH---------------hhhhcCCCCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVE---------------RAKKEGDLPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~---------------~~~~~g~~~~~~~~s~~e~~~ 69 (487)
|+||..||+|++|.+.+..++-+- .+|++.|.+..++.+... +-. +.++-..++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr---gknlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR---GKNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc---CCceeeecchHHHhh
Confidence 579999999999999888887653 488899999887654432 111 114556778888887
Q ss_pred hcCCCcEEEEecCCCh--------------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHH--HcCCeE--Ee
Q 011394 70 SIQKPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELGLLY--LG 131 (487)
Q Consensus 70 ~l~~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--i~ 131 (487)
. +|+||++|-++. .+++....+.......+||+.-||+.....+.+...+. .+|++| +.
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEecc
Confidence 7 999999996552 23344456666667789999999999888888887774 346655 45
Q ss_pred cCCCCChhhhc---CCC-ccccCC--CHHHHHHHHHH---HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHH
Q 011394 132 MGVSGGEEGAR---HGP-SLMPGG--SFEAYKYIEDI---LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQ 202 (487)
Q Consensus 132 ~pvsgg~~~a~---~G~-~i~~gg--~~~~~~~v~~l---l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~ 202 (487)
-|-+-.+..|. ..| .++.|| +++-.+.++.| ++.+--+ . -+.....-+++..|++.|++.+--+.
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~-----~-~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR-----E-QIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc-----c-ceeeccccHHHHHHHHHHHHHHHHHh
Confidence 55443332222 234 567787 45555555544 4443321 1 23445678999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcC
Q 011394 203 LIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLS 282 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~g 282 (487)
.++-+.++|+..| .|..++...+. +-.++..+.+...-.|+++++-+.++.. +.....+|
T Consensus 229 sins~salceatg-adv~eva~avg---------~d~rig~kfl~asvgfggscfqkdilnl----------vyice~ln 288 (481)
T KOG2666|consen 229 SINSMSALCEATG-ADVSEVAYAVG---------TDSRIGSKFLNASVGFGGSCFQKDILNL----------VYICECLN 288 (481)
T ss_pred hhHHHHHHHHhcC-CCHHHHHHHhc---------ccccccHHHhhcccCcCchhHHHHHHHH----------HHHHhcCC
Confidence 9999999999999 99888877652 1123444555555568888887777653 45666667
Q ss_pred CC
Q 011394 283 VA 284 (487)
Q Consensus 283 v~ 284 (487)
+|
T Consensus 289 lp 290 (481)
T KOG2666|consen 289 LP 290 (481)
T ss_pred Ch
Confidence 65
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=111.81 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||+....+..... ++....+++|+++. ||+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999986432222111 23445789999887 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9998 5688889999999999999999998998888876544
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=103.08 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cC--CC-------------CccccCCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EG--DL-------------PLFGFRDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g--~~-------------~~~~~~s~ 64 (487)
++.|+|||.|.||+.||+.-+..|++|.++|++++.+.+..+.... .+ .. +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 4579999999999999999999999999999999876554332110 00 00 34456677
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEec-CCCCCh
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGM-GVSGGE 138 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~-pvsgg~ 138 (487)
.+++.+ +|+||.++-....++.-+ ..+.... +...++-..|++...+ +++..++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~a-k~~~il~tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIA-KSSTILATNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhc-ccceEEeecccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777776 899998887665555444 4444444 4445554555543333 33333322 37888865 665444
Q ss_pred hhhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011394 139 EGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (487)
Q Consensus 139 ~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~ 218 (487)
+-.+.. -.+++.+..+..+-+.+|+.. +.+ ..-.| .+.|.+ .+-.+.|++++.++.- .+
T Consensus 166 EVir~~-----~TS~eTf~~l~~f~k~~gKtt-------Vac-kDtpG----FIVNRl---LiPyl~ea~r~yerGd-As 224 (298)
T KOG2304|consen 166 EVIRTD-----DTSDETFNALVDFGKAVGKTT-------VAC-KDTPG----FIVNRL---LIPYLMEAIRMYERGD-AS 224 (298)
T ss_pred hhhcCC-----CCCHHHHHHHHHHHHHhCCCc-------eee-cCCCc----hhhhHH---HHHHHHHHHHHHHhcC-Cc
Confidence 422221 136888999888888898753 333 22334 345554 5666799999999987 89
Q ss_pred HHHHHHHHH
Q 011394 219 NEELQNVFT 227 (487)
Q Consensus 219 ~~~i~~v~~ 227 (487)
.+++...+.
T Consensus 225 keDIDtaMk 233 (298)
T KOG2304|consen 225 KEDIDTAMK 233 (298)
T ss_pred HhhHHHHHh
Confidence 999988763
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=111.35 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=92.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+++|+.|...|++|.+||++++..... .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653321 1235688898887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
..++ .++.+.+++|.++|+++.+.--+...+.+.+.+..+.....-|+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 7776 57788899999999999998888888888887654444433343
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=110.16 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|.+|.+||++....+...+. ++....+++++++. +|+|++++|...+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 489999999999999999999999999999985433322221 23455689999987 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~G 312 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGG 312 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceE
Confidence 9988 56888899999999999999889888988887765543
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=100.61 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 90 (487)
||..+|..|+++|++|++++|+ ++.+.+.+.+... ++. .+...+++++ .. ..|+||+++|.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~---~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LP---PADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cC---CCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 6666666544210 000 1122233444 22 489999999987 78999
Q ss_pred HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC---CHHHHHHHHHH
Q 011394 91 IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYKYIEDI 162 (487)
Q Consensus 91 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg---~~~~~~~v~~l 162 (487)
++.+.+.+.++.+||...|+.. ..+.+.+.+... |+.++++-..+...-...+. .+..|. +.+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLG-HEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCC-CHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 9999999999999999888863 233344444221 12222221111100011122 233332 22344556666
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCCH--
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLTN-- 219 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~~~~Ea~~l~~~~g~i~~-- 219 (487)
|+..+-+ +....+.-...+.|++.|. .......++.|+..++++.| ++.
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6654432 2333334555556665553 33455677899999999988 763
Q ss_pred HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 220 ~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
+.+.+.+.........+ ..++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 227 ~~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 33444443322211111 1122233333221 25666654 578999999999998765
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=98.30 Aligned_cols=118 Identities=22% Similarity=0.215 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|++.| ++|+++||++++.+++.+...... ......+.++++++ +|+||+|+|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 468999999999999999999996 799999999999888776543100 00124456666555 999999999875
Q ss_pred h-HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 P-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 3 2222211 123578999999998854 44 7777888888877754
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=108.97 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=90.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+.|...|++|.+|||++.... ....+ .. ..++++++++ +|+|++++|...++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~-------~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELG-------AE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcC-------CE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999865432 11111 22 4578998887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 5788889999999999999999998888888765443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.99 E-value=9e-09 Score=96.49 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=88.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++++.+... .... +.+++... ++|+++.|.....-.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v-~~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVV-APEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-cchhhccc--cCCEEEecccccccC
Confidence 58999999999999999999999999999999998888776421 2333 33445442 399999776544222
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCC-CCChhhhcCCCccccCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGV-SGGEEGARHGPSLMPGGS 152 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv-sgg~~~a~~G~~i~~gg~ 152 (487)
+..+ +.+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||.. .+-..|+++.
T Consensus 100 ~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv~---~~~~e~~~~~ 157 (200)
T cd01075 100 DDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGLI---NVADELYGGN 157 (200)
T ss_pred HHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCce---eehhHHhCCc
Confidence 3333 334 468999999986543 5677889999999996 444 55422 2223455554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-09 Score=106.67 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.||+.+|+.|+ ..|.+|.+||+++.... . .. +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 58999999999999999994 46889999999875421 1 11 2345689999887 9999999998877
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
.+.++ .+..+.+++|.++|++|++...++..+.+.+.+..+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 77665 4677889999999999999999999998888765443
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=99.21 Aligned_cols=138 Identities=20% Similarity=0.361 Sum_probs=93.5
Q ss_pred HHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhccc
Q 011394 22 LALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYME 99 (487)
Q Consensus 22 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~ 99 (487)
+|+.|.++| ++|++||++++..+...+.+.. ....+..+.+.+ +|+||+|+|.. .+..+++++.+++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------~~~~~~~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII------DEASTDIEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------SEEESHHHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------eeccCCHhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 7999999999988776665431 222222456665 99999999975 78999999999999
Q ss_pred CCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCh----hhh----cCCC-cc-ccCC--CHHHHHHHHHHHHHH
Q 011394 100 KGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE----EGA----RHGP-SL-MPGG--SFEAYKYIEDILLKV 166 (487)
Q Consensus 100 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~----~~a----~~G~-~i-~~gg--~~~~~~~v~~ll~~i 166 (487)
+|.+|+|.+++.-.......+.+ ..++.|++. |++|.+ ..+ ..|. .+ +++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~-~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLL-PEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHH-TSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhc-CcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 99999999999865555444443 367899976 877762 122 2455 33 3333 567899999999999
Q ss_pred hccC
Q 011394 167 AAQV 170 (487)
Q Consensus 167 g~~~ 170 (487)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9873
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=105.79 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999888889999999998432 111 0124589999887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+.++ .+.+..+++|.++|++|.+...+...+.+.+.+..+.....-|+
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8887 56778899999999999999999999988887754443333333
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=106.05 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765422111 01124578888887 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9888 467788999999999999988888888888877655433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-09 Score=96.84 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=87.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.|..-|.+|.+|||+..........+ + ...+++|+.+. +|+|++++|...+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333222 2 45699999998 99999999977777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7766 5677889999999999999888888888888765444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=102.91 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||.++|++|...|++|++||+.....+.....+ +.. .+++|+++. +|+|++++|++. .
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~~-t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDEQ-Q 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCChH-H
Confidence 5799999999999999999999999999997644333332222 333 489999988 999999999864 5
Q ss_pred HHHH-HHHhhcccCCCEEEecC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~s 108 (487)
+.++ +++++.+++|.+++-.-
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 7777 57899999999877543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=99.84 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=89.9
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++.+++||||||+|.||..++.+|.+. +++|. +|||++++.+++.++... ...+++++++.+. +|+|++
T Consensus 2 ~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vvi 73 (271)
T PRK13302 2 SSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVVE 73 (271)
T ss_pred CCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEEE
Confidence 344557999999999999999999873 77776 889999998877765321 2457789999776 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE-EecCCCCCh
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY-LGMGVSGGE 138 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pvsgg~ 138 (487)
|+|+. ...++.... +..|+.|+..+.......+++.+.+++.|..+ +..+-.+|-
T Consensus 74 ~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 74 AAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred CCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 99986 445554444 45677666666665556677777788888776 444444443
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=91.58 Aligned_cols=195 Identities=16% Similarity=0.258 Sum_probs=127.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-----------hhhhcCCC-------CccccCCHHHHHh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-----------RAKKEGDL-------PLFGFRDPESFVN 69 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~~-------~~~~~~s~~e~~~ 69 (487)
-||||+|.|.+|+..|..|++.||+|..||..++.+....+ .+.-.|++ .+..++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 47999999999999999999999999999999876533221 12111111 3557889999999
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC--c
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP--S 146 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~--~ 146 (487)
. +=.|-.|+|.+-.++.-+ .++-+.+ ...+|+..||+....+ ...+-+..+.-..+..||-... .=| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc----ccchhe
Confidence 7 778888999887666554 4444444 4556666666544433 2333333333334555542110 011 1
Q ss_pred cccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 147 LMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 147 i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+++. .+++.+++.+.+.+++|.++ +.+-.+. .| .+.|.+.+++. +|.+.|+...+ ++..+++.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~p------V~l~rei-~G----f~lnriq~Ail---ne~wrLvasGi-l~v~dvD~ 219 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEP------VTLKREI-LG----FALNRIQYAIL---NETWRLVASGI-LNVNDVDA 219 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCC------ccccccc-cc----ceeccccHHHH---HHHHHHHHccC-cchhhHHH
Confidence 2333 47889999999999999764 3333332 22 23466666554 99999998877 99888888
Q ss_pred HH
Q 011394 225 VF 226 (487)
Q Consensus 225 v~ 226 (487)
++
T Consensus 220 Vm 221 (313)
T KOG2305|consen 220 VM 221 (313)
T ss_pred HH
Confidence 86
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=87.82 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=134.4
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHHHHH-HHhhhhcCCCCccccCCHH
Q 011394 7 LTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKKEGDLPLFGFRDPE 65 (487)
Q Consensus 7 ~~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~~~~~~s~~ 65 (487)
||||+|.|+|+. |..||..++++||+|.+.|+|.+-.+.- -++.... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 579999999974 7789999999999999999886644322 2233322 477888888
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHH--Hc--CCe-EEecCCCCChh
Q 011394 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMA--EL--GLL-YLGMGVSGGEE 139 (487)
Q Consensus 66 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~--~~--g~~-~i~~pvsgg~~ 139 (487)
+.++. +++.++.+|-+...-.+.+.++++++.|.+|.++.|++|...-.- ...++ .+ |+. +..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 999999999998888889999999999999999999887654332 22332 12 332 22334444332
Q ss_pred hhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 140 GARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 140 ~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
+|..++.| .+++..+++.++.++.|+. .|+-+.---+.+-=..-.+....++.+.+-+...
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~--------~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKE--------VYVLPADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCc--------eEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333332 2578889999999999976 3443322222222222345566777888888887
Q ss_pred HHhCCCCHHHHH
Q 011394 212 KSVGKLTNEELQ 223 (487)
Q Consensus 212 ~~~g~i~~~~i~ 223 (487)
.+.-|.+.+.+.
T Consensus 224 ~qIi~AP~eMIe 235 (340)
T COG4007 224 TQIIGAPKEMIE 235 (340)
T ss_pred HHHhCCcHHHHH
Confidence 765435554443
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.9e-07 Score=86.59 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=116.1
Q ss_pred CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 30 GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 30 G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||+ +.++++++.++.+.+.++++||++..
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988887653 24567788888887 999999999 56899999999887777899999998
Q ss_pred CCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCC--c
Q 011394 110 EWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK--G 183 (487)
Q Consensus 110 ~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~--~ 183 (487)
+.+.. .+.+.+.. +...+ -+|-. +.....|. .+..+. +++..+.++.+|+.+|.. +++.+ .
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~E~~~ 145 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV--------VELPEALM 145 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE--------EEECHHHc
Confidence 87443 34444422 22333 45643 23334566 344442 566778899999999964 33322 1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
-....+--+..++.+.++..+.++ +.+.| +++++..++..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 111111123346677777777776 56678 99999988874
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=94.30 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=109.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|||||.|+||+-+|..|.++||.|.++||+. .+.+++..+ ....+.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 479999999999999999999999999999986 455555443 3457788888875 599999999764 68
Q ss_pred HHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcC--CCcccc----CCC----HHH
Q 011394 88 DETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARH--GPSLMP----GGS----FEA 155 (487)
Q Consensus 88 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~--G~~i~~----gg~----~~~ 155 (487)
+.++...-+. ++.|++++|..+..........+.+ .+.+..+.+ |+.|....-.. |-.++. .|. ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYL-PkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYL-PKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhC-ccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888666555 7889999999988755554455554 346667755 55554312222 222221 233 778
Q ss_pred HHHHHHHHHHHhccC
Q 011394 156 YKYIEDILLKVAAQV 170 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~ 170 (487)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 888999999888763
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-08 Score=106.61 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=90.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||+.... +...+. ++...++++|+++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 47999999999999999999999999999986322 111111 23445689999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999989988888765543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-08 Score=97.97 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=88.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH--------HhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++|||||+|.||+.+|+.|...|.+|++|||+..+..... ..... ......++++++++ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999743211100 00000 00134588899887 999999
Q ss_pred ecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
++|.....+.++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999887888887 5777889999999999998888888888888765443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=105.52 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=89.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++|+++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 111211 13334 89999887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 578888999999999999999999889888876544
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=87.81 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.|..|.+.|+||.++|++|.+..|..+ ..+...+.| +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 4799999999999999999999999999998877 444444433 33 4588899887 99999999985 4
Q ss_pred HHHHH-HHHhhcccCCCEEEecC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~s 108 (487)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 56666 88999999999887654
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-08 Score=100.99 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=87.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 85 (487)
++|||||+|+||+.+|+.+...|++|.+||+.....+ . .....++++++++ ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5799999999999999999999999999998643211 1 1234589999887 999999999754
Q ss_pred --hHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 86 --PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 86 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
....++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 355666 56778899999999999999888888888887654433333343
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=97.33 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=89.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|..+..-|++|.+||+...+-..... ......+++++.++ +|+|++.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 48999999999999999999999999999994333211111 24457789999998 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+.++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 566778999999999999988888888888876433
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=92.54 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--Cc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||||||||+|.||..++..+.+.+ ++ +.++|+++++.+++.+.. +...+++++++..+ +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 479999999999999999998763 55 557999999988877643 24567889998755 9999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCCh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGE 138 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pvsgg~ 138 (487)
. ...+....++ ..|..++..|+. .+...+++.+.+++.|.. +++.+..+|-
T Consensus 72 ~-~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 5 4555554444 455555556652 334455666666777755 4444444443
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.3e-08 Score=99.26 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++|+++. ||+|++++|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 479999999999999999999999999999874311 01 13345689999988 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga 261 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGA 261 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEE
Confidence 8888 567788999999999999998899889888877655433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=94.58 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=87.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+|||..... .. .+ ...+++++.+. ||+|++++|-....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999964321 11 12 24589999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ ++.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 5677889999999999999888888888888765554
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=93.96 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +....+ ++|++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 5899999999999999999977889999999875 1222221 123344 9999998 99999999999888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.-.+
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gag 259 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAG 259 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEE
Confidence 8888 5677889999999999999988998899988876444333
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-08 Score=97.09 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.||..++..+.. ...+|.+|||++++.+++.++.... +.++..+.++++++++ +|+|+.+.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~ 198 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATL 198 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeC
Confidence 445689999999999999986654 4478999999999999998764321 0125567888888877 999988888
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... .++.. +.+++|. +|++.+..+...+++...+.+++..|+|.
T Consensus 199 s~~---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 199 STE---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCC---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 653 33321 4567888 66777777677777766666666677765
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=91.08 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=80.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||..+|+.|...|.+|+++||++++.+.+.+.+.. .....++.+++++ +|+||.++|..- +
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~i-i 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPALV-L 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChHH-h
Confidence 489999999999999999999999999999999876665433211 1112344555554 999999998651 1
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. .+..+.++++.+|||.++.. ..+. . +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~P-g~td-f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKP-GGTD-F-EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCC-CCCC-H-HHHHHCCCEEEEeC
Confidence 1 34556678899999999865 3332 2 45577888877655
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=91.73 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=86.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.+|+.+|+.+. .-|.+|.+||+...... .... +.. ..+++++.+. ||+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 58999999999999999997 77889999998743211 1111 122 3489999887 9999999998888
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 88888 567788999999999999988888888888876544
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=91.93 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=86.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....+++++.+. ||+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 10 0 124579999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+..+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 5677889999999999999888888888888765443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=91.13 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=86.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... . . . ...+++++.+. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----R-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----c-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 48999999999999999999999999999986321 0 0 1 13479999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 5677889999999999999888888888888765443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=96.23 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=83.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
++|||||+|+||+.+|+.|...|.+|.+||+..... .. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~------~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR------GD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc------cc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 589999999999999999999999999999753210 10 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 87 ---VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 87 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
...++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55556 567788999999999999988888888888876543
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=93.02 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=62.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 479999996 999999999999999999998652 256677776 9999999998876
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.++ +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66544 78999999999654
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=90.09 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHhhh----hcCC--CCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAK----KEGD--LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~~~----~~g~--~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+..... ..+. .+.....+++|+++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 221111100 0000 011224589999887 999999
Q ss_pred ecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
++|-....+.++ .+.+..+++|.++|+++-+.--+...+.+.+++..+.....-|+-
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 999887888888 567788999999999999888888888888876544433334443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=87.56 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=91.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~v 81 (487)
||+|-|||+|.+|+.+|..|+++| ++|++-||++++.+++...... ++++ ..+.+.+.+-+++.|+||.++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 679999999999999999999999 8999999999999988765311 1111 223334444444589999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
|... -..+++.. ++.|..++|+|...+.. .++.+.+.+.|+..+ ++++..|..
T Consensus 77 p~~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 77 PPFV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred Cchh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 9763 33444433 55789999999887665 677777788887765 677766643
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-07 Score=80.11 Aligned_cols=97 Identities=18% Similarity=0.313 Sum_probs=72.5
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC----c---cccCCHHHHHhhcCCCcEEEEecC
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP----L---FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~----~---~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|.|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+...-... + ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777766542100000 0 01111212333 3999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.. +++++++.+.+.+.+++.|+...|+.
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCC
Confidence 86 78999999999999998888888886
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-06 Score=71.50 Aligned_cols=111 Identities=17% Similarity=0.284 Sum_probs=80.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.+|......+.+. +.+|. ++|+++++.+.+.+.. ++..++|.+++.+. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 4899999999999999898877 44554 7899999998886654 35688999999884 2489999999987
Q ss_pred hhHHHHHHHHhhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
...+-+...+ ..| .++++- -...+.+.+++.+..++.|..+
T Consensus 74 ~h~~~~~~~l----~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKAL----EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHH----HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHH----HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 6544443332 234 455552 2234567777777777777653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=86.57 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=88.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||+|+|.+|+.+|++|...|..+.-++|++...+...+... . ..+.++++.+ +|+|++++|....+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHHH
Confidence 58999999999999999999999555556777766665554432 1 5588888887 99999999999999
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (487)
..++ .++...+.+|.+||+++-+..-+-+.+.+.+.+
T Consensus 232 ~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 9998 578889999999999999988888888877765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=86.38 Aligned_cols=112 Identities=18% Similarity=0.128 Sum_probs=79.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-+|++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChhh-
Confidence 3589999999999999999999999999999998876655443211 1112344555554 999999998642
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+-++....++++.+|||.++.... +. . +..+++|+..+.++
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLAP 263 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEEC
Confidence 224556678899999999876533 32 2 34566788777653
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=86.15 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=82.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~- 85 (487)
.+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+.++.. +.++|+||.|+|.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCC
Confidence 457999999999999999999999999999999999888876542211 111 22333322 224899999999752
Q ss_pred -hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 -PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 -~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.++.+.- ....+.++.+++|+++..+.+ .+.+..+++|..+++.
T Consensus 192 ~~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 192 GNIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 1211100 123467899999999876554 4677778888877643
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=79.47 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=126.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|+|||||.|+|...+++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 56666553222222 2222 24455555777776 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCCccccCC---CHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGPSLMPGG---SFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~~i~~gg---~~~~~~~ 158 (487)
+. .+..++.++.+.+..+++|+.+--+..-.+ +.+.+. ...+++ -+|-. +.....|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmpNt--p~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMPNT--PSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecCCC--hhhhhcCcEEEeeCCCcchhhHHH
Confidence 74 788888888777788999999877764333 333332 123333 22322 23334566544332 4556688
Q ss_pred HHHHHHHHhccCCCCCCeEEEe-CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYV-SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~-G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
++++|..+|.-....|+|+-.+ |-.|+|.+ +.+..+..+++. .-+.| ++++...++-
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmG-lPr~lA~~la 202 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMG-LPRQLAYRLA 202 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccC-CCHHHHHHHH
Confidence 9999999997655567777555 44788873 444555555555 55677 9988877764
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=85.79 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.|++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 468999999999999999999866 6899999999998888775421 11122234454444 999999999875
Q ss_pred hHHHHHHHHhhcc-cCCCEEEecCC
Q 011394 86 PVDETIKTLSAYM-EKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~st 109 (487)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44444443332 35789999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=86.63 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...++||||+|.||...++.|.. ...+|.+|||++++.+.+.++.... +..+..+.++++++++ +|+|++|+
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT 200 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTT 200 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEec
Confidence 3445689999999999997666654 4569999999999998887654321 1125668899999987 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
|+... ++. ...+++|..|...++..|.
T Consensus 201 ~s~~P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 201 PSRKP---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CCCCc---Eec--HHHcCCCCEEEecCCCCcc
Confidence 87643 221 2346899999988877664
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=85.13 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=60.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 4799999 99999999999999999999995 653 24556666 999999999886
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.++.++ +.+|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=75.65 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|||+|-||+.++..|.+.|.+ |+++||+.++++++.+..... ...+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 45899999999999999999999986 999999999999998775211 0012234455555555 999999999874
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st 109 (487)
. .+-+.......+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1112222222221 49999973
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-05 Score=70.51 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=76.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999987 99999999999999999851 11 89999999975 5
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcCC---Ccccc--CCCHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYKYIE 160 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~G---~~i~~--gg~~~~~~~v~ 160 (487)
+.++++++. .+|+|.++++.. +.+ .+..|++. |++| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~----i~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWP----FKK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHH----HHH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 666666553 379999998743 211 24578876 7776 4444443 33333 34566778888
Q ss_pred HHHHHHhcc
Q 011394 161 DILLKVAAQ 169 (487)
Q Consensus 161 ~ll~~ig~~ 169 (487)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8887 554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=82.51 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh----hhcC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+...... ...+ ..+++.+.+.++ +++ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 6799999999999999999999876 9999999988764432211 1000 002333445544 344 9999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+..+. .++++++.+.+.. +..++|..||..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 73221 2344445666655 556777777654
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-06 Score=81.70 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=61.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 47999999 999999999999999999999311 2357777777 9999999998876
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++..+ +.+|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998654
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=79.45 Aligned_cols=119 Identities=12% Similarity=0.212 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...+++|||+|.++...++.+..- --+|.+|||++++.+.+.+..... +.++..+++.+++++. +|+|++++
T Consensus 125 ~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT 200 (315)
T PRK06823 125 PQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTT 200 (315)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEec
Confidence 34456899999999999998887753 248999999999999888654322 1245668899999987 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHH-HHHHHcCCeEEec
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAELGLLYLGM 132 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~i~~ 132 (487)
++... +++ ...+++|..|+..++..|..- ++. +.+.....-|+|.
T Consensus 201 ~s~~P---~~~--~~~l~~G~hi~~iGs~~p~~~-Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 201 PSREP---LLQ--AEDIQPGTHITAVGADSPGKQ-ELDAELVARADKILVDS 246 (315)
T ss_pred CCCCc---eeC--HHHcCCCcEEEecCCCCcccc-cCCHHHHhhCCEEEECC
Confidence 87643 332 135679999999988776433 333 3333333345554
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=79.41 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=84.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
...++||||+|.+|...++.++.- . -+|.+|||++++.+++.++.....+..+.+++++++++.. +|+|+++++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 446899999999999998888764 2 3899999999999998876543111236678899999988 9999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... +++ ...+++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 193 ~~P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 193 DTP---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CCc---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 643 332 23567898888888877644332233344333446664
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=79.92 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.+|...+..++. .+ -+|.+|||++++.+++.+......+..+..+.+.++++.+ +|+|++|+|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~ 201 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTN 201 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccC
Confidence 344689999999999998887764 34 4899999999999988865422101123457788888876 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.... ++. ..+++|..|+..++..|...+.-.+.+.....-|+|.
T Consensus 202 s~~p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 202 AKTP---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCCc---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 7743 333 4578999999998877655433333333333345554
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=78.65 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=82.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.+|...+..++. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.|+|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~ 197 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATT 197 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccC
Confidence 344689999999999999999975 45 479999999999999887653210 0122 5688888877 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.... +++. .+++|..|+..++..|...+--.+.+... --|+|.
T Consensus 198 s~~P---l~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 198 SRTP---VYPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred CCCc---eeCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 8753 3332 36899999999987765433222333332 345665
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=78.12 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+|.||..+|..++..|+ +|.++|++++..+... +...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 689999999999999999999887 8999999776543111 1111000 013555667776 344 99999999
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+. .++++.+++.++. ++.+||..||..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 7432 2334445666664 567888888754
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=77.24 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.|+-|.+-|+||.++|.+|++--|.... .+...+.| +. +.+++|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 48999999999999999999999999988776555 33333332 33 6689999997 99999999986 4
Q ss_pred HHHHHH-HHhhcccCCCEEEec
Q 011394 87 VDETIK-TLSAYMEKGDCIIDG 107 (487)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~ 107 (487)
-.++++ ++.|.|++|+.+.-.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEec
Confidence 456664 899999999966543
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-05 Score=70.35 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||+||+|.+|..+...+.+. ++ .|.+|||+.+++.++.+... ...+++++|+.+. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 5899999999999999877643 24 57799999999988876543 3456889999876 9999999865
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe--EEecCCCCCh
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL--YLGMGVSGGE 138 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~--~i~~pvsgg~ 138 (487)
+++++...+++.. ..+-+|+..+.-..+.-.++...+.+.+-. |+..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4666665554432 123345554444433333333334444433 3344445553
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=67.83 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=70.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH-CCCcEE-EEeCChH-HH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTS-KV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|||+|+|+ |.||+.++..+.+ .++++. ++|++++ .. .++.... ..++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 678755 6688872 11 1121111 1146678899999887 999988
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
... +..+...++... ..|..+|..+|+......+..+.+.++ +..+-+|
T Consensus 74 fT~-p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FTN-PDAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES--HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cCC-hHHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 873 345555555444 358888888888754444444444333 4444444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=69.83 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=61.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
++.|+|.|..|+++|+.|...|-+|++++++|-+.-+....+ +. +.+.++++.. +|++|.++.....+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~-v~~~~~a~~~---adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FE-VMTLEEALRD---ADIFVTATGNKDVIT 93 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------E-EE-HHHHTTT----SEEEE-SSSSSSB-
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cE-ecCHHHHHhh---CCEEEECCCCccccC
Confidence 699999999999999999999999999999998766555443 33 3468888776 999999876643222
Q ss_pred HHHHHHhhcccCCCEEEecCCCC
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+..+.+++|.++.+.+...
T Consensus 94 ---~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 94 ---GEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp ---HHHHHHS-TTEEEEESSSST
T ss_pred ---HHHHHHhcCCeEEeccCcCc
Confidence 23455688999999888654
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=68.48 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=63.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
||+||| .|.+|..++..|.+. ++++... +++.++.+.+........ ... ...+..++.. .++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 699999 599999999999985 7877765 665544434333321100 010 0111122221 2499999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45555555566678999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=82.82 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|+|||+|.||..++..|...|. +|+++||++++++.+.+..... ...+...++..+.+.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 4689999999999999999999997 7999999999999888753210 0011223455555555 999999987664
Q ss_pred h--HHHHHHHHhhcc---cCCCEEEecCC
Q 011394 86 P--VDETIKTLSAYM---EKGDCIIDGGN 109 (487)
Q Consensus 86 ~--v~~vl~~l~~~l---~~g~iiId~st 109 (487)
. ..+.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 3 233333332211 12247888864
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=80.68 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||.|.+|..+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 3799999999999999999999999999999987764433322 22 3467888776 9999998653
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~ 111 (487)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3344 35667789999999998873
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.4e-05 Score=81.92 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++++|+|+|.+|.+++..|++.|++|+++||++++++.+.+.... . ..+.+++. .+.++|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~~-~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESLP-ELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHhc-ccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999998887654311 1 11222221 13349999999998864
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+... +. .+++|+....+.+. +.+.++++|...+
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~ 436 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSII 436 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEE
Confidence 3321 11 38999988765543 5566777787655
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.96 E-value=4e-05 Score=77.51 Aligned_cols=99 Identities=10% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
...+++|||+|.+|...+..|+. .+. +|++|||++++.+++.++....-+..+...++++++++. +|+|+.|+|.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCC
Confidence 34589999999999999999974 564 799999999999998876432101124456788888876 9999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
... ++. ...+++|..|...+.-.|
T Consensus 205 ~~p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 205 ETP---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred CCc---Eec--HHHcCCCcEEEeeCCCCC
Confidence 643 332 134678988887776544
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.8e-05 Score=74.19 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--C-----CcEEEEeCChH------HHHHHHHhhhh-c----C---CCCccccCCHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVERAKK-E----G---DLPLFGFRDPES 66 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~~~~~-~----g---~~~~~~~~s~~e 66 (487)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+....... . + ..++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 4899999999999999998864 2 26777754332 33332221110 0 0 015677888888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+ +|+++..+|. +.+..++++|..+++++...|.++.+.
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeecce
Confidence 8877 9999999997 478999999999999999999988765
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.7e-05 Score=74.43 Aligned_cols=87 Identities=17% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+.||+|||+|+||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++.. ++|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~---~iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLD---DVDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhcc---CCCEEEEcCCC
Confidence 46999999999999999999876 67777 579985 4332 111 2233445555544 49999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
....+. ..+.+..|.-+|++..
T Consensus 71 ~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHHH----HHHHHHcCCCEEECCC
Confidence 766443 3455668888888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.2e-05 Score=75.43 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=87.8
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+....++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.|+|
T Consensus 128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~ 204 (330)
T COG2423 128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATP 204 (330)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecC
Confidence 3446799999999999998888753 34899999999999998865443221135788899999998 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.. .++. ...+++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 205 s~~---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 205 STE---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred CCC---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 875 3332 245779999988887665544333344444446677765
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=83.82 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-Cc-------------EEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS 70 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~ 70 (487)
.|++|+|||+|.||...+..|++.. ++ |++.|+++++++++.+..... ..+.. +.+.+++.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKY 645 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHh
Confidence 4679999999999999999999763 33 999999999988877643110 01233 5677777765
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCC
Q 011394 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVS 135 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvs 135 (487)
++.+|+||.|+|..-. ..+.. ..+..|.-+++.+ .....+.++.+.+++.|+.++ +++..
T Consensus 646 v~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 646 VSQVDVVISLLPASCH-AVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred hcCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 5669999999998643 33333 2345678888887 334566677777778887766 44533
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.2e-05 Score=70.75 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 84 (487)
|+|.|||+|.+|..+|+.|.+.||+|.+.|++++++++... ..... -+....+..++.++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 68999999999999999999999999999999999988554 21110 12233333344332 45699999999876
Q ss_pred hhHHHHHHHHhhc-ccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAY-MEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~-l~~g~iiId~st~ 110 (487)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666555543 4445566555443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.1e-05 Score=77.27 Aligned_cols=108 Identities=42% Similarity=0.701 Sum_probs=94.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhHhhhccccccccCCCCchhHHhhh
Q 011394 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVL 262 (487)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g-~i~~~~i~~v~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~l~~i~ 262 (487)
+|+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.+. ++||+++...+++.+++ .++.+.
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~ 236 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFS 236 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHH
Confidence 3699999999999999999999999999984 3799998887 78876 69999999998887642 345677
Q ss_pred hccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccc
Q 011394 263 DKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 263 ~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~ 301 (487)
+.+.++++++|++++|.+.|+|+|+++++++.|+.|..+
T Consensus 237 ~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 237 GRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 777789999999999999999999999999999988866
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=79.76 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCC
Confidence 358999999999999999999999 7899999999988877765321 11122345555555 999999987764
Q ss_pred hHH--HHHHHHhhcccCCCEEEecC
Q 011394 86 PVD--ETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~--~vl~~l~~~l~~g~iiId~s 108 (487)
.+- +.+......-....+++|.+
T Consensus 253 ~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 253 PIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred ceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 321 12222111111234788886
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=80.81 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|+|||+|..|.+.|.+|...|++|++--|. .+.-+.+.+.+ +. ..+++|+++. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 58999999999999999999999999944433 33333333322 33 3678898887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhc---C--CC-ccc-cC---
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGAR---H--GP-SLM-PG--- 150 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~---~--G~-~i~-~g--- 150 (487)
|+. .-..+.+++.+.+++|.++.-.- +.--. .......+++..+ -+|=..|+.-.+ . |. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fsH-GFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYSH-GFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEecC-Cceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 987 45566689999999998876432 22100 0011123355444 456555543222 2 32 322 22
Q ss_pred -CCHHHHHHHHHHHHHHhcc
Q 011394 151 -GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 151 -g~~~~~~~v~~ll~~ig~~ 169 (487)
.+-.+.+.+...-..+|..
T Consensus 181 D~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCCchHHHHHHHHHHHhCCC
Confidence 2234566666666666653
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=76.04 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..+|+.+...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 22 2356777665 99999887643
Q ss_pred HHHHH-HHhhcccCCCEEEecCCCCc-hhHHHHHHH
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNEWY-ENTERREKA 121 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~ 121 (487)
.++. .....+++|.++++.+.... -+...+.+.
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 3443 46677889999999987654 344444443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.4e-05 Score=75.70 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+..++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++.....+..+..+.++++++.+ +|+|+.++|
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~ 206 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTP 206 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeC
Confidence 344689999999999998888875 44 5899999999999999875432101123456788888876 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
.... ++.. ..+++|..|...++..|
T Consensus 207 s~~p---~i~~--~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 207 SEEP---ILKA--EWLHPGLHVTAMGSDAE 231 (330)
T ss_pred CCCc---EecH--HHcCCCceEEeeCCCCC
Confidence 7643 3321 23567887777665443
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.5e-05 Score=72.50 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||||||+|.||..+++.+.+. +.++. ++++... .+...+.... ++..+++++++ . .++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGE----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhcc----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 57999999999999999999876 45554 4444322 1111111110 24567888887 3 2499999999875
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCChh
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGEE 139 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pvsgg~~ 139 (487)
...+.... .+..|.-++..++. .+....++.+..++.|.. |+..+..|+..
T Consensus 73 -~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 73 -ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred -HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 34444333 34567666666654 232334555666666755 44555555543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-05 Score=78.20 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC-h
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG-A 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~-~ 85 (487)
.+|.|||+|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 479999999999999999999999999999999988777654321 011 1223344444444599999997431 1
Q ss_pred hHHHHH-HHHhhcccCCCEEEecCC
Q 011394 86 PVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 445566788999999874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.8e-05 Score=75.36 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|||||+|.+|...+..|... + ..|.+|||++++.+++.++....-+..+..+++.+++++ +|+|++|+|
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTp 202 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTP 202 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecC
Confidence 3456899999999999999998853 3 378899999999988887543210112455778888774 899999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+... +++ ...+++|..|...++..|..
T Consensus 203 s~~P---~~~--~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 203 SRKP---VVK--AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred CCCc---Eec--HHHcCCCCEEEecCCCCCcc
Confidence 7643 332 13467999999888777643
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.2e-05 Score=80.10 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... ......+..+.+. .+|+||.|++.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCC
Confidence 3689999999999999999999997 899999999998887765321 1122233444444 4999999998764
Q ss_pred hHH--HHHHHHhh-cccCCCEEEecCC
Q 011394 86 PVD--ETIKTLSA-YMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~--~vl~~l~~-~l~~g~iiId~st 109 (487)
.+- ..+..... .-..+.++||.+.
T Consensus 255 ~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 255 PIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 431 22222111 1124568888874
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.5e-05 Score=75.97 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+++|||+|..|...+..++.. + -+|.+|||++++.+++.++.... +..+..+++++++++. +|+|++|+|
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~ 201 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATP 201 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE---
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccC
Confidence 3446899999999999988887753 3 38999999999999998776532 2356788999999988 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
..... .+++ ...+++|..|+..++..|..
T Consensus 202 s~~~~-P~~~--~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 202 STTPA-PVFD--AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp -SSEE-ESB---GGGS-TT-EEEE-S-SSTTB
T ss_pred CCCCC-cccc--HHHcCCCcEEEEecCCCCch
Confidence 87510 2222 24678999999998877643
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=72.84 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCcEEEEcccHHH-HHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGLAVMG-QNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGlG~mG-~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~ 80 (487)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++++.++.. + ..++|.+++++. .+.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 45799999999554 568888888763 46688999999998887653 3 478899999885 336999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCe
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLL 128 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~ 128 (487)
+|+....+-++. .|..|+.|+.-= +..+.+.+++.+..+++|..
T Consensus 75 tp~~~H~e~~~~----AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALA----ALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHH----HHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999877665543 345666555421 22335666666666665543
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=74.36 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+...+++|||+|..+...++.++.- --+|.+|||++++.+++.++.... +.++..++++++++++ +|+|+++++
T Consensus 127 ~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~ 202 (346)
T PRK07589 127 PDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTA 202 (346)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecC
Confidence 3446899999999998887766643 348999999999999888765432 1246678899999998 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+.. -..+++. +.+++|..|.-.++..|..
T Consensus 203 S~~-~~Pvl~~--~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 203 DKT-NATILTD--DMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred CCC-CCceecH--HHcCCCcEEEecCCCCCCc
Confidence 542 1123321 3568999888888766543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=71.42 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||||+|||+ |.||+.++..+.+. ++++. ++|+++++.... . ..++..+++++++.+. +|+|+.+.|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~------~~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G------ALGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C------CCCccccCCHHHhccC---CCEEEECCCH
Confidence 479999998 99999999988864 67766 589988765443 1 1135567788888765 9999988765
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~p 133 (487)
. ...+++.. .+..|.-++..+|+.. ....++.+ +. +++..+-+|
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 4 34444433 3445666665565543 33333333 33 444444444
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=72.63 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=62.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHH--H--HHhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDE--T--VERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..++..+.+.+++ + +||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~---~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-A---GSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-C---CCCEEEECC
Confidence 589999999999999999999996 99999999885421 1 11100000 0134444566543 4 399999976
Q ss_pred CCC----h----------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAG----A----------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-.+ . .+.++.+.+.+.. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 221 1 1233345555555 445777777654
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=70.19 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHH-CCCcEE-EEeCC-hHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+||+|+| +|.||+.+++.+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++.. .+|+||.+.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECC
Confidence 46999999 69999999999986 467766 57854 33221 111111000 012456678888743 389999998
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++. ...+.+. ..+..|.-+|..+|+. +...+++.+..++.|+.++-+|
T Consensus 77 ~p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 77 TPE-GVLNHLK---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred ChH-HHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 764 4444443 3345666666555544 2334444444455556555444
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=73.54 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=49.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCC--Ccc-ccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDL--PLF-GFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~--~~~-~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++ ++|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 58999999999999999999999 58999999988765322111100000 011 1234433 33 4999999997
Q ss_pred CC
Q 011394 83 AG 84 (487)
Q Consensus 83 ~~ 84 (487)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=7e-05 Score=74.01 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=76.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+...... .+....+..+.+. .+|+||.++|.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCC
Confidence 357999999999999999999999 699999999999988876543210 0111112223333 4999999998763
Q ss_pred hHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 86 PVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 86 ~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.-. ....-....++++.+|+|..- .|..| .+.+..+++|...+
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 210 000001134577899999976 44444 45555667776544
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=73.21 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=76.6
Q ss_pred EEEEcccHHHHHHHHHHHHCC-C-cEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|.|+|.|.+|+.+++.|++.+ + +|++.||+.++++++.+..... ++.. ..+.+++.+-++++|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887641100 1111 23444444434459999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
. .-..+++.. +..|...||.+. ......++.+..++.|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 445555444 346788999433 13344455566677787766 567666643
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=75.14 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|.+|..+|+.+...|.+|+++++++.+.......+ +. ..+.+++++. +|+||++......+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~-vv~leEal~~---ADVVI~tTGt~~vI 323 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQ-VLTLEDVVSE---ADIFVTTTGNKDII 323 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Ce-eccHHHHHhh---CCEEEECCCCccch
Confidence 4799999999999999999999999999999988755444333 22 2367787776 99999866543221
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+....+++|.++++.+..
T Consensus 324 ---~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 324 ---MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---HHHHHhcCCCCCEEEEcCCC
Confidence 24566778999999999884
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=76.56 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=54.2
Q ss_pred CcEEEEcccHHHHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~adv 76 (487)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++++........ .+ ..++..++++++++++ ||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998666 34 45578999999999887765432211 00 1145667788888776 999
Q ss_pred EEEecCCC
Q 011394 77 IIMLVKAG 84 (487)
Q Consensus 77 Ii~~vp~~ 84 (487)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999854
|
linked to 3D####ucture |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=72.87 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=60.9
Q ss_pred EEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... +...... ..+++.+.+.++ ++ +||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC---CCCEEEEecCC
Confidence 6899999999999999998887 9999999987643221 1111000 012333445444 33 49999998843
Q ss_pred Ch---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .++++++++.+.. +..++|..||..
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445666655 556766676644
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=74.33 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|||+|.||.-.|++|+++| ..|++.||+.+++.+++++... -+.+++++...+..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5899999999999999887542 13345555554555999999986653
Q ss_pred hHH--HHHHHHhhcccCCCEEEecCC
Q 011394 86 PVD--ETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~--~vl~~l~~~l~~g~iiId~st 109 (487)
.+- ..+..... .++.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~-~r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALK-IRKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHh-cccCeEEEEecC
Confidence 321 11222221 112257888875
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=73.04 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.++|.|||+|-+|++++..|+..|. +|+++||+.++++.+.+..... ....+....+..+... ++|+||.|+|.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCC
Confidence 3579999999999999999999998 7999999999999887654211 0001111233333334 499999999865
Q ss_pred hhHH-H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 85 APVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 85 ~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
..-. . -+. ...+.++.+++|..-.. ..| .+.+..+++|...+
T Consensus 204 m~~~~~~~~~--~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 247 (284)
T PRK12549 204 MAKHPGLPLP--AELLRPGLWVADIVYFP-LET-ELLRAARALGCRTL 247 (284)
T ss_pred CCCCCCCCCC--HHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEe
Confidence 2100 0 010 12367788999987644 333 45555667776554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00026 Score=70.93 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC---CCCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG---DLPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+........ ..+... ..+.++ ++ ++|+||++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~---~aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK---DADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC---CCCEEEEcc
Confidence 38999999999999999999999 689999999998776654321100 001111 233443 33 499999998
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. .++++.+.+..+- +..+||..||.
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6531 1233335555544 45677777754
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=74.78 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+..+....+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998865544332 22 3367777765 99999987543
Q ss_pred HHHHH-HHhhcccCCCEEEecCCCCc
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~ 112 (487)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 3443 56677889999999987653
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=66.47 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+......+..+.. ..+.+++.+.+.++|+||.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 358999995 999999999999999999999999999888776432100001111 23444333333459999999988
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..........++.+++|..-..
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCC
Confidence 753 1111222344578999986554
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00036 Score=69.09 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 79999999999999887542210 122222223333333459999999997754
Q ss_pred HHHH-HHHHh-----hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 VDET-IKTLS-----AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+.. +.... ..+.++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEE
Confidence 3321 11100 123467889998743 3333 34455566665544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=63.70 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC-C--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG-D--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......... . .+........+.++ ++|+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK---DADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT---TESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc---cccEEEEec
Confidence 69999999 9999999999999875 89999999887654433211100 0 01222223333333 399999987
Q ss_pred CCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
-.+ .. ++++.+.+.++- +..+++-.||.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334555554 56677777664
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00053 Score=58.02 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=68.2
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCChhH
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~v 87 (487)
|-|+|.|.+|..++..|.+.+.+|++.|+++++++.+.+.+... +....+-.+..+ .+++++.++++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988766321 112122222222 345699999999876332
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..+...+....+...+++-..+. +..+.++..|+..+-
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEEE
Confidence 23333333333334555544332 234445556765543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00037 Score=67.29 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=77.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+||||||+|.||..++..|.+.+ +++ .+++|++++.+++... ...++++++++.. ++|+|+.|-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCCH
Confidence 68999999999999999987642 443 4688998888777643 3578899997432 39999999875
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchh---HHHHHHHHHHcC-CeEEecCCCCChh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---TERREKAMAELG-LLYLGMGVSGGEE 139 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~g-~~~i~~pvsgg~~ 139 (487)
. ++++....++ ..|.-++-.|.+-..+ -+++.+..++.| --|+..+-.||-.
T Consensus 73 ~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 73 Q-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 4 5666555544 4565555555443333 222333334444 3466666666644
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00063 Score=68.96 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
..||||||+ .||...+..+.+.. +++. ++|+++++.++++++. ++..+++.+|+.++ .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 368999999 68999999998754 6655 6899999999988765 25578899999876 7888888754
Q ss_pred ----ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 ----GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+-+ ...+..|+-|+.-=-....+.+++.+..+++|..+.
T Consensus 73 ~~P~~~H~e~a----~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALA----RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHH----HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2333322 233456776665444445677777777777777665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00032 Score=61.97 Aligned_cols=122 Identities=24% Similarity=0.348 Sum_probs=75.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+... ....+-.-+....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999875443333322100 00000111222333333322 4555555543311
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.. ....+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4555567778888899999998776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=69.83 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHH---hhhh-cC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVE---RAKK-EG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++.+.+.+++ ++ +|+||++.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVita 81 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVITA 81 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEECC
Confidence 58999999999999999999998 699999999876432111 1100 00 0023334566633 44 99999998
Q ss_pred --CCC-------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 --KAG-------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 --p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.. ..++++.+.+.++. |..++|..||..
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 321 12445555666654 666777777654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=62.50 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=59.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCC-c-EEEEeCChHHHHHHHHhhhhcCCC-CccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGF-P-ISVYNRTTSKVDETVERAKKEGDL-PLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~~~~~g~~-~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||+||| .|++|..+.+.|.++-+ + +.++.++.+.-..+.......... .+...+ +.+++ .+ +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 99999999999999643 4 456677663333333321100000 122333 33444 44 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
. ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 445555444 56889999999875
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=72.36 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--C-CcEEEEeCChHHHHHHHHhhhhcC-CC-CccccCCHHHHHhhcCCCcEEE
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEK--G-FPISVYNRTTSKVDETVERAKKEG-DL-PLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~~~~~g-~~-~~~~~~s~~e~~~~l~~advIi 78 (487)
.+...+++|||+|.++....+.++.- . -+|.+|||++++.+++.++..... +. .+.+++++++++++ +|+|+
T Consensus 152 r~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVv 228 (379)
T PRK06199 152 RKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVT 228 (379)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEE
Confidence 34456899999999999999888763 2 389999999999998887654210 11 26678999999987 99999
Q ss_pred EecCCCh---hHHHHHHHHhhcccCCCEEEecCC
Q 011394 79 MLVKAGA---PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 79 ~~vp~~~---~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+|++... ....+++ ...+++|..|+..+.
T Consensus 229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 9997532 1113332 235678888765443
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=62.10 Aligned_cols=191 Identities=12% Similarity=0.123 Sum_probs=113.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+.+||||.|..|.....+-...++... +..|++++++.+.+.. ...+.++.+.-+..+++|+.+|+.
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~ 78 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA 78 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH
Confidence 34689999999999996555444444444 3368888887766533 223333333312267888888764
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC---eEEe-cCCCCChhhhcC--CCccc-cCCCHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL---LYLG-MGVSGGEEGARH--GPSLM-PGGSFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~---~~i~-~pvsgg~~~a~~--G~~i~-~gg~~~~~~ 157 (487)
.+..+... ..-.+|++|++||.-... .+.+.+...|. .+.. +-.+|.++.... ++.|. .-+|+--+.
T Consensus 79 -~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 79 -LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred -HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 23333221 234689999999976533 34444444442 2222 234555555442 33332 246777778
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 158 YIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 158 ~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
.++.+...||.+. +.+-+ +.--......|.-..-...++.|+..+-+..| .|.-+
T Consensus 153 i~q~la~emgg~~-------f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 153 IVQSLALEMGGEP-------FCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHHhCCCc-------eeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 8889999998763 33332 43333444444444556788899999988888 77443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00067 Score=73.80 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
-+|-|+|+|.+|+.+++.|.+.|++|++.|.|+++++++.+.+... +....+.++..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~----i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRA----VLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeE----EEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 4688999999999999999999999999999999999887654211 222223333332 3457999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
....++..+... .+...+|-..+ .+ +..+.+++.|+.++-.|
T Consensus 494 ~~~~iv~~~~~~-~~~~~iiar~~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREK-RPDIEIIARAH-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHH-CCCCeEEEEEC-CH----HHHHHHHHcCCCEEECh
Confidence 444444444443 33333333322 22 23344556687777655
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00061 Score=59.15 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=72.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|.+||+| -|..+|..|++.|++|++.|.++..++.+.+.+... .....++..-++-++ +|+|..+=|++ .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-D 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-H
Confidence 3689999999 999999999999999999999999988776654310 001123334456666 99999988876 5
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
+..-+-.++......-+|...|+..|.
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 555566677777666677777776543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00039 Score=72.01 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +. ..+.++.+.. +|+||.++....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~-~~~~~e~v~~---aDVVI~atG~~~-- 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YE-VMTMEEAVKE---GDIFVTTTGNKD-- 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CE-EccHHHHHcC---CCEEEECCCCHH--
Confidence 4799999999999999999999999999999999877665543 22 2245666655 999999876532
Q ss_pred HHHHH-HHhhcccCCCEEEecCCC
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~ 110 (487)
++. .....+++|.++++.+..
T Consensus 270 --~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 --IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 446778899999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00073 Score=55.41 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=63.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~ 263 (487)
-.++++|++.|++.+..+++++|...+|++.| +|..++.+.+.. ... +....+..+-.|++.++.+...
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~~--d~r-------i~~~~~~pg~g~GG~ClpkD~~- 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAANT--DPR-------IGPHYLRPGPGFGGSCLPKDPY- 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHHT--STT-------TTSSS-S-SSS--SSCHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHcc--Ccc-------cccccCCCCCCCCCcchhhhHH-
Confidence 36889999999999999999999999999999 999999988732 111 1122344443466666666542
Q ss_pred ccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 264 KTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 264 ~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
..+..+.++|.+.+++.++
T Consensus 71 ---------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 71 ---------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp ---------HHHHHHHHTTSHHHHHHHH
T ss_pred ---------HHHHHHHHcCCCHHHHHHH
Confidence 4568899999998877655
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=64.68 Aligned_cols=122 Identities=12% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHH---CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAE---KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~---~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
+.+..-++||+|+|.|+.-+++.|.- .+|.|+ ++||+.+++.++++...-. +.+...|.+|++++ ..+|+|.
T Consensus 2 ~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVy 77 (351)
T KOG2741|consen 2 SDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVY 77 (351)
T ss_pred CCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEE
Confidence 34455689999999999999998863 367665 6799999999998865321 35788999999986 3469999
Q ss_pred EecCCChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+..|.++..+-+...+ ..|+ ++++- -.......+++.+.++.+|+.|.+.
T Consensus 78 i~~~~~qH~evv~l~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 78 ISTPNPQHYEVVMLAL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred eCCCCccHHHHHHHHH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9999987655444332 2333 44442 1223356777888888889877764
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00097 Score=66.89 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g----~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......... ..++..+.+++++ ++ +|+||+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvi 77 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIV 77 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEE
Confidence 34699999999999999999998875 79999998876544332211110 0023434566653 43 999999
Q ss_pred ecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.-.+ .. ++++.+.+..+ .+..++|..||..
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 76331 11 22333455555 4667777777643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00034 Score=63.61 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|||.|.| |..+|.+|.+.|.+|++.+|+.+. +.+.+.+ +|+||.+++.+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~---------------------l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN---------------------LKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh---------------------HHHHHhh---CCEEEEcCCCCc-
Confidence 58999999997 888999999999999999997432 2234444 999999998864
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.. +.++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2211 2356789999998653
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=66.51 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC-C-CCcccc-CCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG-D-LPLFGF-RDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~-~~~~~~-~s~~e~~~~l~~advIi~~v 81 (487)
-+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......... . .+.... .+.++ .+ +||+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~---~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CK---DADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hC---CCCEEEEec
Confidence 3699999999999999999999987 89999999887655443222100 0 012222 33333 34 499999986
Q ss_pred CCCh----h-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
-.+. . ++++++.+..+- +..++|..||.
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 4321 1 223334444443 45667777753
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=72.08 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
.+|-|+|.|.+|+.+++.|.+.|+++++.|.|+++++.+++.+... +..-.+-.++.+ .++++|.+++++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKV----FYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeE----EEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999987654310 122223334443 4567999999998875
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
....++..+... .|. .+++-..+ .+....+.+.|+.++..+..
T Consensus 477 ~n~~i~~~ar~~-~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 477 TSLQLVELVKEH-FPHLQIIARARD------VDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEECC------HHHHHHHHHCCCCEEehhhH
Confidence 544444444333 344 44443322 13345566778877755443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=72.02 Aligned_cols=115 Identities=11% Similarity=0.168 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+... +....+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV----YYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE----EEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999887654311 222223334433 3457999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
....++..+....+.-++++-+.+ ++..+.+.+.|+..+-.
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQFSR 517 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEEEc
Confidence 554554444443333344443322 13345566677776643
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=66.57 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.+|.. .+..+... +.++. ++|+++++.. +... ....+++++++++. .+.|+|++|+|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999985 56666554 57765 6899987653 1111 24567899999864 347999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 84 GAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
....+.++.. +..|+.|+ +- -.....+.+++.+..++.|..+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7665544433 34566554 31 1123345566666666666554
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00024 Score=73.92 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .....+++.+.+. .+|+||.|++.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~ 254 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLE 254 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCC
Confidence 4589999999999999999999996 7999999999999888754210 1222333344444 4999999998774
Q ss_pred h
Q 011394 86 P 86 (487)
Q Consensus 86 ~ 86 (487)
.
T Consensus 255 ~ 255 (414)
T PRK13940 255 Y 255 (414)
T ss_pred e
Confidence 3
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00032 Score=59.78 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=71.5
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+||| .+..|.-+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3699999 799999999999999999999987754321 35678888884244 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. .+.++++++... ..+.+|+..+ ...+++.+.+++.|+.+++.
T Consensus 66 ~-~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 D-KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp H-HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred H-HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 5 678888877664 4566777766 34456667778889988854
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00056 Score=66.98 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=65.3
Q ss_pred EEEEcc-cHHHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 10 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g----~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+|||+ |.||..++..|+..| .+|.++|+++++++.......... ..+++.++++.+..++ ||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 799999999877655433221100 0134555666666665 9999996
Q ss_pred cCCC---------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.-.+ ..++++.+.+.... +..++|..||..
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 5221 12334445555544 677777777644
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00091 Score=65.83 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++||+|+|.+|+.+|.++..-|..|+.||.- +.+. ....+ +. ..+++|+... +|+|-+-+|-..+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~--~~a~g-------vq-~vsl~Eil~~---ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMAL--AEAFG-------VQ-LVSLEEILPK---ADFITLHVPLTPS 213 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHH--HHhcc-------ce-eeeHHHHHhh---cCEEEEccCCCcc
Confidence 47999999999999999999999999999854 3322 22222 23 4578888887 9999999998878
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (487)
.+.++ ++.+..+++|..||+++.+..-+...+.+.+..
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 88888 456677899999999999887888777776654
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=65.20 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred EEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCC----CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGD----LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~----~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|||+|.+|.++|..|+..| .++.++|+++++++........... .++....+.+ .++ +||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAA---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhC---CCCEEEEcCCC
Confidence 689999999999999999998 5899999999887665543221100 0122233433 333 49999999864
Q ss_pred Ch---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. .++++.+.+..+- +..++|..||.
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1233334555544 66677777754
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=68.76 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~-l~~advIi~~vp~~~ 85 (487)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+.. ..+...+.+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876522100 0111 1223322222 45699999999876
Q ss_pred hHHHHHHHHhhcc-cCCCEEEecC
Q 011394 86 PVDETIKTLSAYM-EKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~s 108 (487)
.....+......+ +...+|+...
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3443333333333 4445555543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00068 Score=69.00 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+||+|||+ |.+|..+++.|.++ ++++.. +++. +..+.+.+..............+.++.. .+++|+||+|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEI--LAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHH--hcCCCEEEECCCc
Confidence 579999996 99999999999987 567654 5543 3222222211100000001223333321 2349999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
+. ..++...+. ..|..|||.|+...
T Consensus 79 ~~-~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 GV-SMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred HH-HHHHHHHHH---hCCCEEEECCcccC
Confidence 74 444444443 46899999998763
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0023 Score=61.16 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~a 74 (487)
.++|+|.|+|++|+.+++.|.+.|.+|+ +.|. +.+.+.+..+.......+ ... .-+.+++... +|
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--cc
Confidence 4689999999999999999999999998 6677 666665554432210000 001 1133444332 48
Q ss_pred cEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
|+++-|.+...-..+.+..+ +=++|+..+|... +.+..+.|.++|+.|+.-
T Consensus 108 Dvlip~a~~~~i~~~~~~~l-----~a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRI-----KAKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhc-----eeeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 99999987764433443333 2467888777753 366778889999998854
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=69.38 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=51.3
Q ss_pred CCcEEEEcccHHHHHHHH--HHH----HCCCcEEEEeCChHHHHHHH---Hhhhh-cC-CCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETV---ERAKK-EG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|+||+|||.|.||...+. .++ -.+.+|.++|+++++++... +.... .+ ..++..+++..+.++. +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 479999999999977665 554 23569999999998866322 11111 00 1145667777777776 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||+++-.+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998665
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00043 Score=63.04 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------------------c---CC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------------------F---RD 63 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--------------------~---~s 63 (487)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++....... +.. . ..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhhHHHHHhHHH
Confidence 36899999999999999999999999999999999887766543321 111 1 12
Q ss_pred HHHHHhhcCCCcEEEEecC-CChhHHHHH-HHHhhcccCCCEEEecCC
Q 011394 64 PESFVNSIQKPRVIIMLVK-AGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~vp-~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
+.+.++. +|+||.++. .+.....++ ++.+..+.++.+|+|.|.
T Consensus 96 f~~~i~~---~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAP---ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH----SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhh---CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3344444 899997542 222222233 556667889999999974
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.001 Score=67.80 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=60.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhh-cCCCCcccc-CCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKK-EGDLPLFGF-RDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~~~~~-~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|||+ |.+|..+.+.|.++ ++++. +++++...-+.+.+.... .+....... .+.+++.++ +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 58999997 99999999999987 56777 556554322222221110 000001111 145555544 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ ...++...+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 87 3444444443 4689999999865
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0045 Score=65.38 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cc-cCCHHHHH-hhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FG-FRDPESFV-NSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~-~~s~~e~~-~~l~~advIi~~vp~ 83 (487)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+++.+.+.. ..+ .. ..+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 5789999999999999999999999999999999999888765321 011 11 12333331 234569999988886
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+ ...-.+..++..+....+++-+.+.. . .+.+...|+.++-.|
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~--~----~~~~~~~g~~~vi~p 350 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA--Y----VDLVEGLGIDIAISP 350 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc--h----HHHHHhcCCCEEECH
Confidence 5 33333333344455556666555432 2 233455676665443
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0029 Score=64.42 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC----------CCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK----------GFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~~~~~~s~ 64 (487)
..+|+|+|+|.||+.+++.|.+. +.+|. ++|++ .+++..+.+.......+ ....+.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 35899999999999999999865 34544 56753 33333333321100000 01123477
Q ss_pred HHHHhhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
+++++. ..+|+|+.|+|+.... +...+-+...+..|..||..+..... ...++.+..++.|..|. .+.+.+|
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 888754 2489999999874321 22223334556788888765432211 23345555566677664 4555544
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0034 Score=58.87 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 39 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 39 (487)
..+|+|||+|.||+.+|.+|++.|+ +|+++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=65.94 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=46.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHhh----hhcC-CCCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT--SKVDETVERA----KKEG-DLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~l~~~~----~~~g-~~~~~~~~s~~e~~~~l~~advI 77 (487)
|||+|||+ |.+|..++..|+..|+ +|.++|+++ ++++...... ...+ ..++....+.++ ++. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 68999997 9999999999999987 499999965 4432221110 0000 002333344444 443 9999
Q ss_pred EEecC
Q 011394 78 IMLVK 82 (487)
Q Consensus 78 i~~vp 82 (487)
|+++.
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 99985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0037 Score=61.96 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~~-~~s~~e~~~~--l~~advIi~~ 80 (487)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +++.+++++. +++.|+||.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 45665 6799887432 223222 2333 4678888863 3568999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.... ...... .+..|..+||.+...
T Consensus 78 T~a~~H-~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGAH-VRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCHHHH-HHHHHH---HHHcCCeEEECCccc
Confidence 987633 333222 345789999988654
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=63.54 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEec--CC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLV--KA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~v--p~ 83 (487)
..||.|||-|.+|..-|+...--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|++|-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 3589999999999999999998999999999999998877654321 33 23455555555555699999876 33
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.++-+-+.+++...+.||.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3333445577788899999999974
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0045 Score=63.12 Aligned_cols=113 Identities=9% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHH--CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAE--KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|.||||||+|.++.. .+..+.. .+++|. ++|+++++. ++.++.. .+..+++.+++.+. .+.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 458999999998753 3454533 356665 789998654 4443321 24567899999874 34899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+-++.. +..|+ ++++- -.....+.+++.+..++.|..+.
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 74 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred chHHHHHHHHH----HHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 88665554443 33454 45441 11223566667776677776544
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0041 Score=63.29 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=61.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|..+|..|+..+. ++.++|+++++++......... ....+....+.++ ++ +||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~---daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA---GSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC---CCCEEEECC
Confidence 599999999999999999998876 7999999987765443221110 0001222234554 33 399999985
Q ss_pred CCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-.+ .. ++++.+.+..+ .+..++|..||..
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 332 11 22233444444 4566777777643
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=66.99 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cC-C-C-----Ccccc--CCHHHHHhhcCC
Q 011394 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKK----EG-D-L-----PLFGF--RDPESFVNSIQK 73 (487)
Q Consensus 8 ~kIgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~-~-----~~~~~--~s~~e~~~~l~~ 73 (487)
|||.++|+|+||++. +..|.+.|++|++.|++++.++.+.+++.. .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 689999999999855 888899999999999999999999877531 01 1 0 11111 123445444445
Q ss_pred CcEEEEecCCChhHHHHHHHHhhccc--------CCCEEEecCCCC
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYME--------KGDCIIDGGNEW 111 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~ 111 (487)
+|+|.++++.. ..+.+...+.+.|. ++-+|+.|-|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999888764 45555555544432 333788888775
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0042 Score=53.28 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=73.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH--HHhhCCCCCCCcCC
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK--AYDRNADLANLLVD 402 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~--~~~~~~~~~~ll~~ 402 (487)
|+++-.|.++|-+.++.+..++|++.+-++. ++|.++++++-+.| .-.|+.++.... ++..+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4677899999999999999999999998763 49999999999877 457887776543 3332221
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
+.|. ++-....++-++..|-+.|+|+|..+.+..+|..
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2221 2233456688899999999999999999887653
|
... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=64.31 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=57.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|. +|.++|..|.+.|.+|+++++... ++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 4799999988 999999999999999999987431 34445555 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.. ..+++|.+|||.+..
T Consensus 215 i~~------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNT 232 (286)
T ss_pred cCH------HHcCCCcEEEEcCCC
Confidence 222 346789999999875
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0041 Score=59.00 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh----------HHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKKEGDLPLFG--FRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~ 73 (487)
-++|+|.|+|++|+.+|+.|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 3589999999999999999999988 556778887 6655544433211 0111 112234433 2 5
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCH
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSF 153 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~ 153 (487)
||+++.|.+.+.-...... .+ +=++|+...|... + .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~----~l-~a~~V~e~AN~p~-t-~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAK----KL-KAKVVAEGANNPT-T-DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHh----hc-CccEEEeCCCCCC-C-HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 9999999887632222222 22 3467777777643 2 366778889998887543221 111111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
..++.+ +... ..++- -.-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~~--------~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNLQ--------RLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCcc--------ccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 1000 01111 112233444556667788888888888 8887766553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=59.81 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc---EEEEeCC----hHHH-------HHHHHhhhhcCCCCccccCCHHHHHhhcCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKKEGDLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~ 73 (487)
++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. .++.+.... .....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4543 223322110 0111256566665
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+|+||-+.|.+......+ ..+.++.+|++.+|..+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l----~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMI----KKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHH----HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 999999998553223333 33457788999885443 2344444455654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=62.66 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|||||+|.||..++..+.+. +.++. ++|+++++.. ++.++. ++. ..++.+++++. .+.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 55665 6799887643 233322 232 34578888764 347999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+.+.. ...+..|..|||.+...
T Consensus 75 ~~H~e~a----~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARHA----RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHHH----HHHHHcCCEEEECCccc
Confidence 7543332 23356789999887654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=68.35 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc------------cCCHH-------HH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG------------FRDPE-------SF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~------------~~s~~-------e~ 67 (487)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... ..+.. ..+.+ .+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHHHHH
Confidence 35899999999999999999999999999999999877665533210 00000 00100 02
Q ss_pred HhhcCCCcEEEEec-----CCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 68 VNSIQKPRVIIMLV-----KAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 68 ~~~l~~advIi~~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+.++++|+||.++ |.+. -+.++....+++|.+|||.+..
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~---Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPK---LITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCe---eehHHHHhhCCCCCEEEEeeeC
Confidence 23345599999888 3331 1234556778889999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=63.84 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=59.0
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|.. |.++|..|.+.|.+|++++.. +.++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 47999998888 999999999999999997642 2345566666 9999999997653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 5688999999998754
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.016 Score=55.74 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=98.3
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 57 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+++++++..|+++. +|++|+-+|-+...-.+++.+.+++++|.+|.++.|++|..--++.+.+..+.+...++.. +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56777888888887 9999999999976678889999999999999999999877655555555444444433321 1
Q ss_pred ChhhhcCCC-ccccC-CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011394 137 GEEGARHGP-SLMPG-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 137 g~~~a~~G~-~i~~g-g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~ 214 (487)
+.++.. |. .+.-| .+++..+++-+|.++.+... +.+-..=.+...-|. ..+.+...+.+.+-+....+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~a-------y~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~I 272 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKA-------FKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKI 272 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCe-------eecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 223333 44 34333 38899999999999988752 333222223333333 233444556666666666665
Q ss_pred CCCCHH
Q 011394 215 GKLTNE 220 (487)
Q Consensus 215 g~i~~~ 220 (487)
-|.+.+
T Consensus 273 lgAP~~ 278 (340)
T TIGR01723 273 LGAPAD 278 (340)
T ss_pred hcCcHH
Confidence 535443
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0038 Score=63.45 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHhhhhc------------CCCCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISV-YNRTTSKVDETVERAKKE------------GDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~~~~~------------g~~~~~~~~s~~e~~~~l~ 72 (487)
|+||||+|+|.||+.+++.+.+. +++|.+ +|++++....+.+..+.. ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 56999999999999999988864 567664 577766555544421100 00013334455555544
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||.|.|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 777777776542 222222 233456666666553
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=50.23 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=46.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++++|+|.|.+|.+++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35899999999999999999998 568888887 57777776654
Q ss_pred hHHHHHHHHhhcccCCCEEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 3332 1234456778888763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=66.43 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------C--Cc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~ad 75 (487)
+.+|||||+|.||..++..|.++ | .+ +.++|+++++...+. .. ....++++++++++ .+.|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~~------~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-LP------GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-Cc------ccceeCCHHHHhhC-CCCC
Confidence 36899999999999999888654 3 34 346799977643211 00 23467789998864 2479
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
+|+.+++......+. +...+..|+.||...... .....++.+..+++|+.|. ++-|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998754322332 334566888887543210 1123344455556677543 5555544
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0028 Score=57.41 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=52.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|||+||| .|..|..|+.-..+.||+|+.+-||++|+..+...... .. -.-+++.+++.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~----q~-Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTIL----QK-DIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceee----cc-cccChhhhHhhhcCCceEEEeccCC
Confidence 7999999 79999999999999999999999999998654211000 00 1224444455555689999988544
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0047 Score=64.43 Aligned_cols=131 Identities=17% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hhcCCCCcccc--CCHHHHHhhcCCCcEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KKEGDLPLFGF--RDPESFVNSIQKPRVI 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~~g~~~~~~~--~s~~e~~~~l~~advI 77 (487)
|+..-.++||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ....... ... ++... ....+... .+|+|
T Consensus 1 ~~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~---~~d~v 73 (448)
T COG0771 1 MMEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLA---EFDLV 73 (448)
T ss_pred CcccccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhccc---cCCEE
Confidence 344444789999999999999999999999999999976655 1111110 000 11111 11112333 38999
Q ss_pred EEe--cCCCh-hHHHHHH---------HHhhcc--cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 78 IML--VKAGA-PVDETIK---------TLSAYM--EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 78 i~~--vp~~~-~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.+ +|... .++.... ++.... ...-+-|..||+...+|.-+...+++.|....-++-.|.+
T Consensus 74 V~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 74 VKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 886 33332 2332221 222222 2235667778888777777778888888877666666554
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0041 Score=62.25 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+ |.+|..+|..|+..|. ++.++|++ +++...-..... ....+..+....+..+.++++|+||++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 58999999 9999999999998884 89999998 322111110000 001233220111122233449999998743
Q ss_pred C----h-----------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 G----A-----------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+ . .++++.+.+.++ .+..++|..||..
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 2 1 122333455555 4677888888753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0052 Score=56.14 Aligned_cols=68 Identities=19% Similarity=0.350 Sum_probs=51.8
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCCC
Q 011394 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++++|.||.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678994 999999999999999999999999998876 1111 1111 245556666666799999999754
|
... |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0051 Score=60.55 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=78.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 579999999999999999999995 89999999999999987654321 0001112222111 0128999999987743
Q ss_pred HHH---HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDE---TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
-.. .+. ...++++.++.|+--.. ..| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNP-LET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCC-CCC-HHHHHHHHcCCeEEC
Confidence 321 122 34577899999986543 333 355666777766553
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0036 Score=62.43 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
+|+||+||| .|+-|.-|.+.|+.+.+ +|..+..+..+-+.+.+...+. +...... .-+++++. ...||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~--~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIE--LDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhh--cccCCEEEEec
Confidence 367999998 89999999999998854 7666665543333333322210 0000111 11333331 23489999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++. -.+.+..+ +.+|..|||+|+-.
T Consensus 79 Phg~-s~~~v~~l---~~~g~~VIDLSadf 104 (349)
T COG0002 79 PHGV-SAELVPEL---LEAGCKVIDLSADF 104 (349)
T ss_pred Cchh-HHHHHHHH---HhCCCeEEECCccc
Confidence 9984 33333333 34677799999875
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0077 Score=60.71 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------C--CcE-EEEeCChHH-------HHHHHHhhhhcCCCCccccC--CHHHHHh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK------G--FPI-SVYNRTTSK-------VDETVERAKKEGDLPLFGFR--DPESFVN 69 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~------G--~~V-~v~dr~~~~-------~~~l~~~~~~~g~~~~~~~~--s~~e~~~ 69 (487)
|+|+|||+|++|+.+++.|.++ | .+| .++|++... ++++.+.... +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 3 443 355766432 2222221110 000001112 5666654
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEE-ecCCCCCh
Q 011394 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYL-GMGVSGGE 138 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~i-~~pvsgg~ 138 (487)
.++|++|-|.|....-.....-+.+.+..|..||-.+...... -.++.+..+++|.++. ++.|.||.
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2589999999753221223444456677888888766432221 1233344455666654 66666553
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.039 Score=53.11 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=98.0
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec---C
Q 011394 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM---G 133 (487)
Q Consensus 57 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~---p 133 (487)
+++++++..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|++|..--+..+.+..+.+....+ .
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777888888887 99999999999767788899999999999999999998776666555555444433332 3
Q ss_pred CCCChhhhcCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 134 VSGGEEGARHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 134 vsgg~~~a~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
|-|.+ |.++..- .+++..+++-+|.++.+... +.+-..=.+...-|. ..+.+...+.+.+-+...
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~a-------y~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~ 271 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNA-------FKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAV 271 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 32222 5533332 38899999999999988752 433222333333333 234445566666666666
Q ss_pred HHhCCCCHH
Q 011394 212 KSVGKLTNE 220 (487)
Q Consensus 212 ~~~g~i~~~ 220 (487)
.+.-|.+.+
T Consensus 272 tqIlgAP~~ 280 (342)
T PRK00961 272 TQILGAPAD 280 (342)
T ss_pred HHHhcCcHH
Confidence 665535443
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=62.89 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-----KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECC
Confidence 46899999999999999999999999999998753 1223333221 11111222333343 89998873
Q ss_pred --CCC-hhHHHHHH---------HHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 --KAG-APVDETIK---------TLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 --p~~-~~v~~vl~---------~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.. ..+....+ +++ .......|-|-.|++...++.-+...+...|....
T Consensus 86 gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~ 147 (458)
T PRK01710 86 SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW 147 (458)
T ss_pred CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEE
Confidence 211 12222111 111 11122235555666665555555667776665443
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0043 Score=60.89 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=59.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-|. +|.++|..|.+.|.+|+++++.. .++++.+++ +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 4799999888 99999999999999999997542 245566666 9999999966543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5678999999998654
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=59.02 Aligned_cols=124 Identities=14% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK---EGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~---~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+.++.-. ..+.+..-+....+.++.+ .+++-+.++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 899999885322222211000 0000000011112222221 1566666655
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.... ...++++ +..-++|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4321 2223333 4456899999854 3433344566677788888776554
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.019 Score=53.85 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3589999999999999999999997 899999885333333322100 0000000111122222221 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .. .+...+..-++||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 122334566899998754 3444445666778888888876544
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.008 Score=64.02 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (487)
-.||.|||+|.+|...+..+...|.+|+++|+++++.+...+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999999999999887766543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0096 Score=59.16 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCCh---HHHHHHHHhhhhcC-CCCccc--cCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKKEG-DLPLFG--FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~~~~--~~s~~e~~~~l~~advIi~~ 80 (487)
+++-|+|.|-+|++++..|++.|.. |+++||++ ++.+++.+.....+ ...+.. .++.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 67766655432110 000111 11222222223348999999
Q ss_pred cCCChh--HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|.+.. .+. .+.. ...+.++.+|+|.--.. ..| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNP-KKT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCC-CCC-HHHHHHHHCCCeee
Confidence 986521 010 0100 13467788999987543 333 34555566665443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.025 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++.... +..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCC
Confidence 3579999999999999999999999999999985 3343322221111 0012222233344444 899998764
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0051 Score=55.33 Aligned_cols=75 Identities=16% Similarity=0.415 Sum_probs=51.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.+++ +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 479999977 599999999999999999998653 244555565 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999987654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=60.88 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 85 (487)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++.......... ......+.+.++ +|+||.+.+.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHE-------RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhh-------hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 47999999999999999999999999999988764432110000 011233333344 888888765432
Q ss_pred -hHHHHH--------H-HH-hhc--c-cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 86 -PVDETI--------K-TL-SAY--M-EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 86 -~v~~vl--------~-~l-~~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+.... + .+ ... . ....|-|-.|++...++.-+...+...|....
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~ 132 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAF 132 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeE
Confidence 122221 1 11 111 1 22246666777776666666777777664433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0061 Score=61.36 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=46.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHH--HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
...||+|||+ |.+|..+|..|+..+. ++.++|+++... -++..-.. ...+....+..+..+.++++|+||++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEEEEe
Confidence 3468999999 9999999999997765 899999987211 12221111 00122212232233334459999998
Q ss_pred cCC
Q 011394 81 VKA 83 (487)
Q Consensus 81 vp~ 83 (487)
.-.
T Consensus 94 AG~ 96 (323)
T PLN00106 94 AGV 96 (323)
T ss_pred CCC
Confidence 643
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0092 Score=59.02 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~---~e~~~~l~~advIi~~vp~ 83 (487)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..............+. .+.... +|+||-++|-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~---~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhh---cCEEEEcCCC
Confidence 579999999999999999999997 799999999999998765321000000111222 223333 8999999986
Q ss_pred ChhHH-H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+..-. . .+. ...+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 205 Gm~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 249 (283)
T PRK14027 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETL 249 (283)
T ss_pred CCCCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEE
Confidence 52100 0 011 12356778999986543 333 34555566776554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0068 Score=60.95 Aligned_cols=75 Identities=13% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC--CcEEEEeCChHHHH--HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++.+... ...+...+++.+..+.++++|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc---CceEEEecCCCchHHHhCCCCEEEEC
Confidence 4779999999 999999999999655 58999999432221 2221111 01233233322212233449999998
Q ss_pred cCC
Q 011394 81 VKA 83 (487)
Q Consensus 81 vp~ 83 (487)
.-.
T Consensus 84 aG~ 86 (321)
T PTZ00325 84 AGV 86 (321)
T ss_pred CCC
Confidence 744
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=58.13 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------CCcEE---EEeCChHHHH--HHHHhhhhcCCCCccccCCH-----HHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--------GFPIS---VYNRTTSKVD--ETVERAKKEGDLPLFGFRDP-----ESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--------G~~V~---v~dr~~~~~~--~l~~~~~~~g~~~~~~~~s~-----~e~~ 68 (487)
.++|+|+|+|.+|+.+++.|.++ |.++. +.||+..+.. .+... ....++. .+++
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA--------EVWTTDGALSLGDEVL 74 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch--------hhheecccccccHhhh
Confidence 46899999999999999999875 33433 4467665543 11110 1122333 3444
Q ss_pred hhcCCCcEEEEecCC-ChhHHHHHHHHhhcccCCCEEEecCCCCchhHH---HHHHHHHHcCCeE-EecCCCCChh
Q 011394 69 NSIQKPRVIIMLVKA-GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTE---RREKAMAELGLLY-LGMGVSGGEE 139 (487)
Q Consensus 69 ~~l~~advIi~~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~---~~~~~l~~~g~~~-i~~pvsgg~~ 139 (487)
.. ...|+|+-+++. ....+. ++.+...+..|..||-..... .+. ++.+..++.|..+ .++-|.||.+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~--lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL--LALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH--hHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 42 347889988876 444555 667777888999998554332 222 2444445556544 4777777643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=53.97 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=51.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++|-|||.|.||...+..|.+.|++|++++++.. .+.++...+ .+.... ...+ ..+.++|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987743 334444332 122211 1111 1133489998888776
Q ss_pred hHHHHHHHH
Q 011394 86 PVDETIKTL 94 (487)
Q Consensus 86 ~v~~vl~~l 94 (487)
.+...+...
T Consensus 82 elN~~i~~~ 90 (202)
T PRK06718 82 RVNEQVKED 90 (202)
T ss_pred HHHHHHHHH
Confidence 555555433
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0074 Score=55.25 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=64.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
||.|||+|.+|..++.+|++.|. +++++|.+.-....+.++.......+-.-+....+.++++ .+++=+.+.+..-.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 68999999999999999999998 5999998862222222111000000000011112222221 14444444433211
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMGVSG 136 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~pvsg 136 (487)
.. .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+.+.+
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 11 12233456689999944 334333355555555 88888664443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0057 Score=61.32 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHH--HHHHHhhhhcCCCCccccC---CHHHHHhhcCCCcEEEEe
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGDLPLFGFR---DPESFVNSIQKPRVIIML 80 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~~~---s~~e~~~~l~~advIi~~ 80 (487)
||+|||+ |.+|.++|..|+..++ ++.++|+++... -++.. ... ..++..+. ++.+.. +++|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~---~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENAL---KGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHc---CCCCEEEEe
Confidence 7999999 9999999999998886 899999987221 11111 100 00233211 123333 449999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+. .++++.+.+..+ .++.++|..||..
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74321 122333455555 4677888888754
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.02 Score=57.35 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=46.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC----CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD----LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~----~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
||+|||+|.+|.++|..|+..+. ++.++|+++++++........... .+.+. ..+.+++ + ++|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~---~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A---DADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C---CCCEEEECC
Confidence 79999999999999999998886 799999998765433322111000 01222 2333333 3 499999986
Q ss_pred C
Q 011394 82 K 82 (487)
Q Consensus 82 p 82 (487)
-
T Consensus 77 G 77 (307)
T cd05290 77 G 77 (307)
T ss_pred C
Confidence 4
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0034 Score=54.85 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+.. .....+..-+...++.+.++ .+++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 79999976433222221100 00000011111222333321 1444455555432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.+..+..+. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 123333333 455899998765 3445566777888999999887664
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0047 Score=63.67 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++||+|+| .|..|..|.+.|.++ .++|..+.++...-+.+................+.+.. .++++|+||+++|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCH
Confidence 356999999 599999999999998 67999887765443222221100000001111122211 12249999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+ ...+++.. +..|..|||.|+..
T Consensus 115 ~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 115 G-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred H-HHHHHHHH----HhCCCEEEEcCchh
Confidence 6 34444443 34689999999765
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.032 Score=59.75 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=72.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v--p~~ 84 (487)
.++|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.+. .+.......+..+. +|+||.+- |..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~ 83 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPT 83 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCC
Confidence 358999999999999999999999999999988776555443221 11111222333343 89988864 333
Q ss_pred hh-HHHHHH---------HHhhcc------c-C-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 85 AP-VDETIK---------TLSAYM------E-K-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 85 ~~-v~~vl~---------~l~~~l------~-~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
.. +...-+ ++.-.+ . + ..+-|-.|++...++.-+...+...|....-.+-.|.+
T Consensus 84 ~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p 155 (488)
T PRK03369 84 APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP 155 (488)
T ss_pred CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence 22 111110 111111 1 2 23556667777666665667777766544333334443
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0095 Score=60.12 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH--HHH----HHHHhhhhcCCCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVD----ETVERAKKEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~~~~~g~~~~~~~~s~~e~~~~l 71 (487)
++.||+|||+ |.+|.++|..|+..|. ++.++|++++ +++ ++....... ..+.+...+..+.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~y~~~~-- 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL-LAGVVITDDPNVAFK-- 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh-cCCcEEecChHHHhC--
Confidence 4569999998 9999999999988764 7999998543 222 122111000 001223333333334
Q ss_pred CCCcEEEEecCC----Ch-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 72 QKPRVIIMLVKA----GA-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 72 ~~advIi~~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++|+||++.-. +. .++++...+..+..+..++|..||.
T Consensus 80 -daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 80 -DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred -CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 39999997642 11 1333335555555566777777753
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.017 Score=55.34 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCc-cccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPL-FGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+.++... ....+- ..+...++.++.+ .+++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999997 788999876555444432110 000000 0011111112211 277777775532
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
- .++-+++ .+.+-++|||+.-. +..-..+.+.+.+.++.++.+.+.|.
T Consensus 107 ~-~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 107 L-SEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred C-CHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 1 1222222 34566899999765 33333345566788999988776543
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.014 Score=58.75 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC--C-CCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG--D-LPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~ 73 (487)
-.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.......... . .+.....+..+.++ +
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---d 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK---D 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC---C
Confidence 358999998 9999999999998885 799999965 33332221111000 0 01222223333333 3
Q ss_pred CcEEEEecCCC----h-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
||+||++.-.+ . .++++..++..+.++..++|..||.
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99999986432 1 1334445666665546777777753
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0028 Score=52.01 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|..|..++.++. ..|+. +.++|.++++..+-. . ++....+.+++.+.+ +.|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i---~-----gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI---G-----GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE---T-----TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE---C-----CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999886544 45775 457899998653211 1 366677899998877 599999999976
Q ss_pred hHHHHHHHHhh
Q 011394 86 PVDETIKTLSA 96 (487)
Q Consensus 86 ~v~~vl~~l~~ 96 (487)
.+.++..++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=59.08 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=57.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcC-CCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQ-KPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~-~advIi~~vp~~~~ 86 (487)
.+|+|+|+|-+|..-.+.....|.+|+++|++++|.+.+.+.++.. ....+.++..+.++ .+|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999996665555555558999999999999998887776531 22211122222111 2788888888 555
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...+ ..++++-.++-.+..
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHHhcCCEEEEECCC
Confidence 54444 334455555555443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0067 Score=59.90 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=55.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|. .|.+++..|.+.|.+|+++++... ++.+.+++ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 3799999997 999999999999999999998321 22233344 9999999975432
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. .+.+++|.+|+|.+..
T Consensus 216 v~------~~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFH 233 (283)
T ss_pred CC------HHHcCCCCEEEEEEEe
Confidence 22 1347899999999754
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=62.23 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=72.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+|+|||. |.+|..+.++|.+.|| +|+..|+..+.+ . ++..+.+++|+-.. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999999 566566553321 0 35678889988665 89999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCch-------hHHHHHHHHHHcCCeEEe
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-------NTERREKAMAELGLLYLG 131 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~~~~~~~~l~~~g~~~i~ 131 (487)
|.. .+.++++++... .-..+||- |.+.+. ..+++.+..++.|+++++
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 975 677788777653 23344443 333322 123445556677887775
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0097 Score=60.12 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.++|.|+|+ |.||+.+++.|+++ | .+|++++|+++++..+.++... .. ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcC
Confidence 358999998 89999999999864 5 5999999999988887765321 11 1245555554 9999988765
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+..+ +++. ..+.++.++||.+- |.+..... ...|+.+++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 4321 1111 23468899999974 34443222 2267777776643
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.036 Score=59.09 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEe--cC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIML--VK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~--s~~e~~~~l~~advIi~~--vp 82 (487)
+++|.|+|+|..|.++|+.|.+.|++|+++|++.....++.+.. ++.... ...+...+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 46899999999999999999999999999998876554433321 122221 22333333 8888876 44
Q ss_pred CChh-HHHHH-------H--HHhhc------c-cCC-CEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 83 AGAP-VDETI-------K--TLSAY------M-EKG-DCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 83 ~~~~-v~~vl-------~--~l~~~------l-~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
.... +...- . ++.-. . .+. .+-|-.|++...++.-+...+...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 3322 22111 0 11101 1 122 3555566666555555667777766544
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.043 Score=58.22 Aligned_cols=117 Identities=14% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
.++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+... ++|+||.+ +|+.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~ 78 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLT 78 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCcc
Confidence 35899999999999999999999999999998765444443322 222111112223 38988863 3322
Q ss_pred h-----hHHHHHH---------HHhhcc------cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 A-----PVDETIK---------TLSAYM------EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~-----~v~~vl~---------~l~~~l------~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. .+....+ ++.... ....|-|-.|++...++.-+...+...|..+...+
T Consensus 79 ~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g 147 (460)
T PRK01390 79 HPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG 147 (460)
T ss_pred CCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence 1 2332221 111111 12235555666665555556677777776554333
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.022 Score=56.58 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHH---HHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPES---FVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~~~~~~s~~e---~~~~l~~advIi~~ 80 (487)
+++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999995 5777776643211000011 222221 12223348999999
Q ss_pred cCCChh--HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|.+.. .+. .... ...++++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 253 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTI 253 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEE
Confidence 986531 111 1100 1235678899998743 3344 45555667776554
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=55.76 Aligned_cols=113 Identities=15% Similarity=0.034 Sum_probs=78.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|.| .|.+|..+-.+|...|++ .++..+|.+- ++.. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 35899999 899999999999999998 7777777631 1111 367788999987731 269999999976
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~i~~p 133 (487)
.+.++++++...- -...|| .|.+.+.. .+++.+..++.|+++++.-
T Consensus 75 -~v~~~l~e~~~~G-vk~avI-is~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVC-ITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 5677776665521 223444 34444333 3456667778899888654
|
ATP citrate lyases appear to form an outgroup. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.014 Score=54.59 Aligned_cols=126 Identities=13% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hc--CCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KE--GDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+.++.- .. ...+..-+....+.++.+ .+++-+....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 69999977432222221100 00 000000111122222222 2666666654
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
... .+..+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~--~~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDS--LSNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccc--ccchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 321 10011122233456889988543 4555556677888899888876544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=57.31 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH---CCCcEEEEeCChHHH---HHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVII 78 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi 78 (487)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+.+. .. ...+.. .+++.+.++ ++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~-~~--~~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHI-PT--AVKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcC-CC--CceEEEeCCCCHHHHcC---CCCEEE
Confidence 68999999 9999999988854 346899999985431 112110 00 001222 234334444 499999
Q ss_pred EecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 79 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.-... .++++++.+.++ .+..+|+..||..
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9975421 122333444444 4667888887754
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0092 Score=58.60 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=57.6
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-| .+|.++|..|.++|.+|++++... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 479999999 999999999999999999986432 123455565 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23468999999998654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.035 Score=52.26 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=47.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+.++.+.+ ++.. .....+ .. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 4899999999999999999999999999988754 344554433 1222 112233 33 38898888765
Q ss_pred C
Q 011394 84 G 84 (487)
Q Consensus 84 ~ 84 (487)
+
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 4
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.026 Score=47.86 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHHC----CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 14 GLAVMGQNLALNIAEK----GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 14 GlG~mG~~lA~~L~~~----G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|.||+.++..|.+. +++|. ++||+ .... ....... +...+.+++++.+.. .+|+||-|.+. ..+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 45555 67888 1110 0111111 135678999998832 39999999544 344
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCch---hHHHHHHHHHHcCCeEE
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYE---NTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~i 130 (487)
.+.+ .+.+..|.-||..|..... .-.++.+..++.|.+|.
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4443 4456688888887765433 22233344455566553
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.022 Score=59.11 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~ad 75 (487)
++|+|.|+|++|+.+|+.|.+.|..|+ +.|.+ .+.+.+..+......++ +.+ .-+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCccceec--ccc
Confidence 589999999999999999999999988 66776 55543333322110000 011 1133444332 499
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+++-|--...-..+.. +.+ +=++|+..+|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 9988754442222222 223 4578888888753 556678889999988843
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=59.71 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHhhhhcC--C-CCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKKEG--D-LPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~a 74 (487)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++..+....... . .++....+..+.++ ++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---da 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK---DA 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC---CC
Confidence 58999999 9999999999998876 79999995432 322111110000 0 01222233333333 49
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 75 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
|+||++.-.+ .. ++++...+..+.++..++|..||.
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999986432 11 333335555555446677777753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.019 Score=50.47 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|+| ....|.+++..|.+.|.+|++++++. .++++.+++ +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 3677777 56677777777777777777776532 145566666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ .+.+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24588999999988654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=50.60 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|-|||.|.+|...++.|.+.|++|++++++ ..+++.+.. .+... ..+++ ..+.++|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 57999999999999999999999999999643 334443321 11111 11111 1244589888887665 5
Q ss_pred HHHHHHHH
Q 011394 87 VDETIKTL 94 (487)
Q Consensus 87 v~~vl~~l 94 (487)
+...+...
T Consensus 83 ~N~~i~~~ 90 (157)
T PRK06719 83 VNMMVKQA 90 (157)
T ss_pred HHHHHHHH
Confidence 66555433
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=59.58 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~ 73 (487)
.-||+|||+ |.+|..+|..|+.. |. ++.++|+++++++...-...... ..++.+..+..+..++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd--- 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD--- 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---
Confidence 358999999 99999999999988 65 78999999988765433221100 0023322333333343
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ .. ++++...+..+..+..+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 99999986432 11 223334455534566677777753
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0069 Score=61.47 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=58.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcE---EEEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~v 81 (487)
|+||+||| .|..|..+.+.|.+++|++ ....++.+.-+.+.-.+. .+...+ +..++ + .+|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~-----~i~v~d~~~~~~-~---~vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK-----ELKVEDLTTFDF-S---GVDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc-----eeEEeeCCHHHH-c---CCCEEEECC
Confidence 46899998 8999999999999988854 555444333222211110 122221 22222 3 399999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+ ...++...+ +..|..|||.|+..
T Consensus 72 g~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 986 444444443 34688999999653
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=54.54 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+.++.......+-.-+....+.++.+ .+++-+...+..-
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~i- 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEKI- 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeeec-
Confidence 589999999999999999999998 5999998832222222110000000000011112222211 1445555544321
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMG 133 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~p 133 (487)
....+. ..+..-++|||++-. +.....+.+.+.+. ++.++.+.
T Consensus 107 ~~~~~~---~~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIE---ELFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHH---HHHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 111122 234456899999543 34434455666666 88887653
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0099 Score=54.85 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc--CC----HHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF--RD----PESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~--~s----~~e~~~~l~~advIi~~ 80 (487)
++|.||| ...+|.++|..|.++|.+|+++|.+.-.. +...+.. +-..+ .+ +.+.+++ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 4799999 66789999999999999999998654322 1100000 00011 12 5566666 9999999
Q ss_pred cCCChh-HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAP-VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+.. +. .+.+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 988753 23 24578999999999764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0073 Score=54.79 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCCCcEEEEcccHHHHHHHHH-HH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 5 KQLTRIGLAGLAVMGQNLALN-IA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~-L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.++.++.+||.|++|.+++.. +. ++|+++. +||.+++++...... ..+.-.+++++.+++ .+.|+.|+||
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtV 154 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTV 154 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEc
Confidence 356789999999999999843 44 5677655 789999976443321 123445566666664 2489999999
Q ss_pred CCChhHHHHHHHHhh
Q 011394 82 KAGAPVDETIKTLSA 96 (487)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (487)
|.. ....+.+.|..
T Consensus 155 Pa~-~AQ~vad~Lv~ 168 (211)
T COG2344 155 PAE-HAQEVADRLVK 168 (211)
T ss_pred cHH-HHHHHHHHHHH
Confidence 975 44555555543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.063 Score=57.61 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=69.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--c
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--V 81 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--v 81 (487)
.+++|.|||+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+.. ..+..-....+.... +|+||.+ +
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv~sp~I 79 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVALSPGL 79 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEEECCCC
Confidence 346899999999999999999999999999997542 23344333210 011111122333444 8999886 4
Q ss_pred CCC-----hhHHHH-------------HHHHhhcc-----cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAG-----APVDET-------------IKTLSAYM-----EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.. ..+... +..+...+ .+..|-|-.|++...++.-+...+...|....
T Consensus 80 ~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 80 SPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred CCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 442 112111 11122111 12345666777776666666777777775543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.023 Score=57.67 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCC--CccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDL--PLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ... +..-+....+.++.+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 9999999754443333221000 000 000011122222222 1555555554
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
..-. ...+. +.+..-++|||++... .....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDNF-ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeeee
Confidence 3311 12222 3345669999997653 444445666677788888766544
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.036 Score=58.05 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEE-e----------CChHHHHHHHHhhh-hcCCC----CccccCCHHHHHhhc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAK-KEGDL----PLFGFRDPESFVNSI 71 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~~-~~g~~----~~~~~~s~~e~~~~l 71 (487)
++|+|.|.|++|+.+|+.|.+.|..|++. | .+.+.+.+..+... ....+ +.. ..+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc-
Confidence 58999999999999999999999999876 7 56665544433210 00000 001 1133343331
Q ss_pred CCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+||+++-|.....-..+....+.. .+=++|+..+|... +.+..+.|.++|+.|+.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998766444444444432 13467888887753 55667788999998884
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=57.02 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||-+. +|.++|..|.+.|.+|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------------------TDDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------------------CCCHHHHHhh---CCEEEEccCCccc
Confidence 4799999888 9999999999999999999842 2245566666 9999998876543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 2357899999999865
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0068 Score=57.40 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=51.5
Q ss_pred CCcEEEEcccHHHHHHHHHH--HHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. .++|.+++|+|.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~ 156 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPA 156 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCc
Confidence 35899999999999999863 35678777 56998776532211 0 012233456666653 248999999998
Q ss_pred ChhHHHHHHHH
Q 011394 84 GAPVDETIKTL 94 (487)
Q Consensus 84 ~~~v~~vl~~l 94 (487)
.. ..++.+.+
T Consensus 157 ~~-~~~i~~~l 166 (213)
T PRK05472 157 EA-AQEVADRL 166 (213)
T ss_pred hh-HHHHHHHH
Confidence 63 34444333
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=57.06 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=57.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ .+|.++|..|.++|..|++++... .++++.+++ +|+||.++..+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 379999977 999999999999999999886421 245556666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998754
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=56.95 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------------TQDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6789999999999999999998743 2245666666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999998764
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=58.46 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=49.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
|||.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+.. +.. ..+++.+.+.++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~-----~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE-----LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE-----EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 69999999999999999999999998765444322110 111 1244444444556899888754
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.049 Score=54.17 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=77.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
++++.+|.++|.+..+.+++++|++.+-++ .++|..++.++.+.| ..+|+.++.....+.+++ . ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~-~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKRT-F-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcCC-C-----CCC
Confidence 789999999999999999999999988765 349999999999877 467887775443332221 1 122
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|.- +-....++-++..|-+.|+|+|....+..+|+..
T Consensus 230 f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 230 FKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred Cch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 322 2234566888899999999999988888877643
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.038 Score=54.78 Aligned_cols=116 Identities=11% Similarity=-0.036 Sum_probs=75.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..||.|.| .|.+|..+..+|.+.||+ .+|=.||.+ .+++. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 46899999 588999999999999997 555444431 11111 366788998887621 269999999975
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
.+.++++++...- -+..||-.+.-...+.+++.+..++.|+++++.--.
T Consensus 77 -~v~~~l~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 77 -FAADAILEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence 6677776665522 223344343333222346667777889998875433
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.023 Score=56.56 Aligned_cols=72 Identities=10% Similarity=0.213 Sum_probs=45.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|+++|..|...+. ++.++|+++++++-.+....... ........+ .+ -+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-hhhhcCCCEEEEeC
Confidence 589999999999999999987764 89999999665433221111000 001222222 11 22234499999987
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.019 Score=56.39 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|+++... +.++++.+++ ||+||.++..+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6678999999999999999998642 2345666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999999764
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=48.00 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH-HHHHHh
Q 011394 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE-TIKTLS 95 (487)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~-vl~~l~ 95 (487)
.-+..++..|.+.|.+|.+||+.-............ +++.++++++..+. +|.||++++.+. .+. -++.+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~ 88 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIA 88 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHH
Confidence 346778999999999999999886654332211001 36778899988887 999999999874 443 346677
Q ss_pred hcccCCCEEEecCCCC
Q 011394 96 AYMEKGDCIIDGGNEW 111 (487)
Q Consensus 96 ~~l~~g~iiId~st~~ 111 (487)
..+.++.+|+|+-+..
T Consensus 89 ~~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 89 KLMRKPPVIIDGRNIL 104 (106)
T ss_dssp HHSCSSEEEEESSSTS
T ss_pred HhcCCCCEEEECcccc
Confidence 7777899999987653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.018 Score=56.91 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|+++... +.++++.+++ ||+||.++.-+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6789999999999999999998532 2345666676 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24578999999998764
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=56.39 Aligned_cols=74 Identities=12% Similarity=0.328 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.||| ...+|.+++..|.++|.+|++++.. +.++.+.+++ ||+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6789999999999999999999743 2246666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .+++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24578999999998654
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=56.08 Aligned_cols=74 Identities=15% Similarity=0.318 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++.. +.++++..++ ||+||.++.-+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------------------TQNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEeCCCcCc
Confidence 4799999 7789999999999999999999743 2245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 32 24578999999999754
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=56.18 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6779999999999999999998632 2245566666 9999999987754
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24578999999998654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.019 Score=57.96 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhc--CCC-CccccCCHHHHHhhcCCCc
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKE--GDL-PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~~~~~~s~~e~~~~l~~ad 75 (487)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++++......... ... ......+..+.+++ +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 499999987 5432221110000 000 12222344444444 99
Q ss_pred EEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCC
Q 011394 76 VIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 76 vIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (487)
+||++.-.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999986332 11 33333455555445666666664
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.057 Score=55.59 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-c----EE--EE--eCChHHHHHHHHhhhhcC--C-CCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKKEG--D-LPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~ 73 (487)
--||+|||+ |.+|..+|..|+..|. . |. ++ |++.++++.......... . .++....+..+..+ +
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k---d 120 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE---D 120 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC---C
Confidence 358999999 9999999999998875 2 34 44 888887655433221100 0 02332333333334 3
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ .. ++++...+.++..+..+||-.||.
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999976332 11 233334555555567778878754
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.065 Score=51.64 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC-CcEE-EEeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKG-FPIS-VYNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G-~~V~-v~dr~~~~~-----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
+||||+|+|+ |+||+.+.+.+.+.. +++. .++|.+... .++...+ .+++...+++.....+ +|++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEE
Confidence 3689999997 999999999999876 4544 668876532 2222111 1134445554444444 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
|=...+. .+...++-. +..+..+|-.+|+......+..+.+.++ +..+-+|
T Consensus 74 IDFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~-v~vv~a~ 124 (266)
T COG0289 74 IDFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK-VPVVIAP 124 (266)
T ss_pred EECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 8765443 444444433 3456666667777765554444444443 4444444
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=49.34 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 47888874 8999999999999999999999999888776543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=59.27 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=55.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+|++|+|+| +|..|..+.+.|.+++|.+. .. .+.+...+....... ...+... +..++ +. +|++|+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~--~l~~~~~-~~~~~-~~---vD~vFla~ 74 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK--NLRVREV-DSFDF-SQ---VQLAFFAA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc--ceEEeeC-ChHHh-cC---CCEEEEcC
Confidence 457999999 59999999999998877433 33 222222111111000 0011111 22333 43 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++ ....++..+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 75 GAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 975 3444444443 4688999999765
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.022 Score=55.92 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|++++... .++.+..++ ||+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 3799999 67899999999999999999997432 245555565 9999999987753
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 32 24578999999998653
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.044 Score=52.89 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE--
Q 011394 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI-- 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI-- 77 (487)
|+...+.++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+.... . . +++.
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~ 61 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------------A--G---GKAIGV 61 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------------c--C---ceEEEE
Confidence 555444456878875 9999999999999999999999999877666543211 0 0 2222
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..-+.+...++.+++++.....+-+.||++...
T Consensus 62 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 62 AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 222334445566666655544555788887654
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.024 Score=55.68 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 66789999999999999999987532 245566666 9999999987654
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 23578999999998654
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.024 Score=55.93 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.+++..|.++|.+|++++... .++.+.+++ ||+||.++.-+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 67899999999999999999987532 245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 24578999999998654
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=55.75 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++.. +.++++.+++ +|+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------------------t~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------------------TKNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------------------chhHHHHHHh---CCEEEEecCCCCc
Confidence 4799999 7889999999999999999999642 2245566666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 24568999999998654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.034 Score=53.65 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|-+|..+|.+|++.|. +++++|.+.-....+.++.-.. ...+-.-+....+.++.+ .+++-+.+++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999997 8889998755443333221000 000000111122222222 2666666665331
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
. ... +...+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|.
T Consensus 104 ~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 104 D-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred C-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEeccc
Confidence 1 111 223345678999998653 4444456677788999987765543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.027 Score=53.70 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=51.2
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|.|+| .|.+|+.++..|.+.+++|.+.-|++. ..+.+...+... +. -..+.+.+.+.|+++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 78998 599999999999999999999999864 355555543210 11 133566777777779999998884
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.041 Score=52.68 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..+|.+|++.|. +++++|.+.=....+.++.-.. ...+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 8889987753333332211000 000000111222222222 145555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+- +.+.+..-++||++... +..-..+.+.+.+.++.++.+.+.|
T Consensus 100 i~-~~~---~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AEN---AEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HHH---HHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 111 22233456899988654 4444445666778899999887655
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.059 Score=60.01 Aligned_cols=93 Identities=11% Similarity=0.189 Sum_probs=68.3
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhh--------cCCC-c
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGA--------RHGP-S 146 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a--------~~G~-~ 146 (487)
||+|+|.. .+.++++++.++++++.+|.|.++++........+.+......|++. |+.|.+..- .+|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999975 78899999999999999999999998555554444433323568865 888886432 2455 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhccC
Q 011394 147 LMP---GGSFEAYKYIEDILLKVAAQV 170 (487)
Q Consensus 147 i~~---gg~~~~~~~v~~ll~~ig~~~ 170 (487)
+++ ..++++++.++++++.+|+++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~ 106 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV 106 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 333 236788999999999999873
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.052 Score=50.75 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|.+|..++++|+..|. +++++|.+.=....+.++.-. ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3589999999999999999999998 699999774322222211000 0000000111222222222 266666655432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.+...+ .+..-++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~---~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEE---FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHH---HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1111122 2334578888754 34455556677788899998877654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.1 Score=55.08 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v-- 81 (487)
++|.|+|.|.+|.++|+.|++.|++|+++|++.... +++.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 479999999999999999999999999999875332 23332221 11111233333221 278887754
Q ss_pred CCCh-hHHHHH---------HHHhhcc-cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAGA-PVDETI---------KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.+. .++... -++...+ ....|-|-.|++...++.-+...+...|....
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~ 138 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHAL 138 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeE
Confidence 3322 222221 1222222 23345666667766666556677777665443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.044 Score=53.96 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|+.++.+|+..|. ++.++|.+.=....+.++... ....+-.-+...++.+.++ .+++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 888998875444334332110 0000001112223333322 144444444432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+.+.++ +..-++|||++.... .....+.+.+...++.++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1112222 345689999886532 333345566778899998876554
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.027 Score=55.74 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=57.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|++++.. +.++++.+++ +|+||.++.-+.-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6678999999999999999999643 2346667776 9999999976532
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .+.+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24578999999998754
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.063 Score=52.80 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... .... .++ . ...+|+||-|+|-+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~~---~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEWR---PDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccch---hhc-c-cccCCEEEECCccccC
Confidence 379999999999999999999997 59999999999988876431 1111 111 1 1238999999985521
Q ss_pred --HH--H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 --VD--E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 --v~--~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+ . -+. ...+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i 236 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVI 236 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEe
Confidence 00 0 011 12366788999987543 333 35555667776554
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.096 Score=55.88 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEecC-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLVK- 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~vp- 82 (487)
.++|.|||.|..|..+|..|++.|++|+++|+++. ....+.+..... ++... .... ... .+|+||++.-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~~---~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LPE---DTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-ccC---CCCEEEECCCc
Confidence 35799999999999999999999999999996643 222222221111 12222 1222 222 3899998752
Q ss_pred --CChhHHHHH---------HHHh-hcccCC----CEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 83 --AGAPVDETI---------KTLS-AYMEKG----DCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 --~~~~v~~vl---------~~l~-~~l~~g----~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+...+...- -+++ ..+.+. .|-|-.|++...++.-+...+...|....
T Consensus 89 ~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~ 152 (480)
T PRK01438 89 RPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA 152 (480)
T ss_pred CCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE
Confidence 222111111 1122 222221 36666677776666556677777665443
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.029 Score=55.11 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+++.||| ...+|.++|..|.+ ++..|+++... +.++++.+++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 4799999 67899999999998 68899998753 2246666676 99999999876
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4332 24578999999998764
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.09 Score=53.39 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHH--------CCC--cEE-EEeCChHH-------HHHHHHhhhhcCCC-Ccc-----ccC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAE--------KGF--PIS-VYNRTTSK-------VDETVERAKKEGDL-PLF-----GFR 62 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~--------~G~--~V~-v~dr~~~~-------~~~l~~~~~~~g~~-~~~-----~~~ 62 (487)
+++|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 3689999999999999998877 464 333 44654221 22222211110000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
+++++++.. .+|+||-+++.. ....... ..+..|..||-.++.... .-+++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667776432 389999888643 4444433 445678888877764211 22234444455677665 555666643
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.093 Score=55.72 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec--
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~v-- 81 (487)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+... ++|+||.+-
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~spgi 76 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYSSAI 76 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEECCCC
Confidence 458999999999999 89999999999999997653 233343322 2222 11223333 389888863
Q ss_pred CCCh-hHHHHH---------HHHhhcc-cC-CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 82 KAGA-PVDETI---------KTLSAYM-EK-GDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
|... .+.... -+++..+ .+ ..+-|-.|++...++.-+...++..|.
T Consensus 77 ~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 77 PDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 4332 222211 1232222 22 346666777776666666777777774
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.85 Score=46.64 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=93.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCC-----------------Cc-cccCCHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDL-----------------PL-FGFRDPESF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~-----------------~~-~~~~s~~e~ 67 (487)
|.+|-|+|+|..+..+|..+.+.+. .|-+.+|...+-+.+.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5689999999999999999998875 7999999888777766544321100 00 123445555
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEe-------cCCCCC
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELG--LLYLG-------MGVSGG 137 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~-------~pvsgg 137 (487)
... =|.+|+|||.+ +-.+|+++|-.. |..=+.||-.|...-.. .-+...+.+.| +.+|. .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 554 79999999987 667788766543 43445555555544222 22333444433 22222 122322
Q ss_pred hhhh---cCCC--ccccC---CCHHHHHHHHHHHHHHhcc
Q 011394 138 EEGA---RHGP--SLMPG---GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 138 ~~~a---~~G~--~i~~g---g~~~~~~~v~~ll~~ig~~ 169 (487)
.... ..|. .+.+| ++....++++.+|+.++-+
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCe
Confidence 2111 1121 34444 3445678888899888765
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.061 Score=53.67 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=58.2
Q ss_pred EEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEecCCC--
Q 011394 12 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLVKAG-- 84 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~advIi~~vp~~-- 84 (487)
|||+|.+|..+|..|+..+. ++.++|++.++++.......... ..+.+...+..+..+ +||+||++.-.+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCK---DADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHC---CCCEEEECCCCCCC
Confidence 69999999999999998886 79999998876554433221100 001222323223333 399999986432
Q ss_pred --h-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 --A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 --~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
. .++++.+.+..+ .+..++|..||.
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 133334555554 466777777764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.065 Score=51.12 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 5 ~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|+++-|.| .|.+|..+++.|+++|++|++.+|++++.+++.+... +.-.. ..++..=+.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D~~~ 66 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSIDLSN 66 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEccCCC
Confidence 3456788887 5999999999999999999999999887665543221 00001 2223223344
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+...++.+.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 67 PEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 445555666655544445677776543
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.092 Score=55.49 Aligned_cols=122 Identities=16% Similarity=0.066 Sum_probs=70.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEe--cC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIML--VK 82 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~--vp 82 (487)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... ....+...+ +|+||.+ +|
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~~~~---~d~vV~sp~i~ 79 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDCELLVQ---ASEIIISPGLA 79 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCChHHhcC---CCEEEECCCCC
Confidence 599999999999999999999999999997643 2233433100 12221 112233344 8888775 34
Q ss_pred CCh-hHHHHH---------HHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 83 AGA-PVDETI---------KTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 83 ~~~-~v~~vl---------~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
... .+.... -+++.. +....+-|-.|++...++.-+...+...|..+.-.+..|.+
T Consensus 80 ~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 80 LDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 332 122111 123222 22234556666776666665677777777766555554443
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=51.53 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
++++.+|.++|.+.++.+..+.|++.+.++. ++|.+++.++|+.+ ...|++++.....+.+. +.. +-
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~~-----~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NFK-----PG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CCC-----CC
Confidence 6888999999999999999999999998753 49999999999876 45677666432222221 111 11
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|.- +-....++-++..|-+.|+|+|...++...|+..
T Consensus 233 f~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 233 FRI--DLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 221 1223446788889999999999999999866543
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=54.81 Aligned_cols=74 Identities=11% Similarity=0.290 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.||| ...+|.+++..|.++|.+|++++.. +.++++..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 4799999 6678999999999999999998742 2245666666 9999999986643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 33 24578999999998653
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.034 Score=54.57 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.+++..|.+++..|++++.. +.++++..++ ||+||.++.-+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6789999999999999999998643 2245566666 9999999986543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24578999999998654
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.094 Score=50.78 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 888998775433333322110 0000001111222222221 255656665432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. ...+ ...+..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 111 i~-~~~~---~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDEL---AALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHHH---HHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 1112 22344668999997643 333335566677888888766543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=48.80 Aligned_cols=85 Identities=11% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~ 67 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQ 67 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHH
Confidence 35788887 69999999999999999999999998766554332110 01 334444455555
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+-+.||+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 68 AARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHHhCCcCEEEECCcc
Confidence 6666666665544455677776543
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.19 Score=48.80 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEe----------CChHHHHHHHHhhhhcCC----C-----CccccCCHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGD----L-----PLFGFRDPESF 67 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~g~----~-----~~~~~~s~~e~ 67 (487)
++|.|-|.|++|+..|+.|.+.|..|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999888 555 233444333221110000 0 0111 144454
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... +||+++-|--...-..+....+.. .+=++|+...|... +.+..+.|.++|+.|+.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 432 499998886544222222233321 13467888887753 336677889999998843
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.065 Score=54.15 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-------CcEEEEeCChH--HHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKK---EGDLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~~~~---~g~~~~~~~~s~~e~~~~l~~a 74 (487)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +++........ ....++....++.+.++. +
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~---a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD---V 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---C
Confidence 48999998 999999999999854 58999999653 22221100000 000012223444444444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCC
Q 011394 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 75 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (487)
|+||++.-.+ .. ++++...+..+..++.++|-.||
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999986322 11 12333455555556677777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.029 Score=55.99 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=64.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
++-|.|.|..|+.+|.++...|.+|.+++.+|-++-+..-.| ++ +.+.+|++.. +|++|+++-...
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnkd--- 276 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNKD--- 276 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCcC---
Confidence 577889999999999999999999999999998765544333 33 3457777776 999999986543
Q ss_pred HHH-HHHhhcccCCCEEEecCC
Q 011394 89 ETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 89 ~vl-~~l~~~l~~g~iiId~st 109 (487)
|+ .+-...++.|.|+.+.+.
T Consensus 277 -Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 -VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -ccCHHHHHhccCCeEEecccc
Confidence 33 233445778888877763
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.08 Score=50.60 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+.....++|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.+ .+++..
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~ 63 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAA 63 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEc
Confidence 55544446788888 59999999999999999999999998877665442210 0001 222222
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+...++.+++.+.....+-+.||++...
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2334445555565555444445677776654
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.089 Score=56.81 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
+++-|+|.|-+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-+.|.+..
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999999888764321 1111222222111 126788777765521
Q ss_pred -HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 -VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 -v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+. -+. ...++++.+++|..-.. ..| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTP-KIT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCC-CcC-HHHHHHHHCCCeEe
Confidence 010 011 12356788999987544 333 34455566665443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=52.21 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-.|+.++.+|+..|. +++++|.+.=....+.++... ....+-.-+....+.++.+ .+++-+.+.+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 888999875333223221100 0000000111122222221 2666666665432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
..++ ....+..-++|||++-.. ..-..+.+.+.+.++.|+.+.+.|-
T Consensus 108 ~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1121 222345668999998653 2323345566778998988776553
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.035 Score=56.47 Aligned_cols=92 Identities=13% Similarity=0.286 Sum_probs=56.8
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHHCCCc---EEEE--eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEE
Q 011394 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVI 77 (487)
Q Consensus 5 ~~~~kIgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advI 77 (487)
-..+||+||| .|..|..+.+.|.+.+|. +... .|+..+.-.. .+. .+.... +.+++ +. +|+|
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~-----~~~v~~~~~~~~-~~---~D~v 73 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGR-----DYTVEELTEDSF-DG---VDIA 73 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCc-----eeEEEeCCHHHH-cC---CCEE
Confidence 3456999998 899999999999998873 3322 3333322111 111 122221 22333 44 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|+|+|++ ........+ ...|..|||.|...
T Consensus 74 f~a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 74 LFSAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred EECCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 9999987 344444433 24689999999754
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=52.91 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-.|..++.+|++.|. +++++|++.-....+.++... ....+..-+....+.++.+ .+++-+...+..-
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~~ 214 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQERV 214 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999998 899999884332222221100 0000000111122222211 1444444444321
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
. ...+.. .+..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 215 ~-~~~~~~---~~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 215 T-SDNVEA---LLQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-hHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 112222 234568999998764 332335566778899999887654
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.037 Score=54.22 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=56.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ ..|.++|..|...|.+|++++++.. ++++.+++ +|+||.+++-+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 479999988 9999999999999999999986532 34455555 9999999975432
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. . ..+++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2368999999998653
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.041 Score=55.55 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.+++..|+++... +.++++.+++ +|+||.++.-+.-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 3799999 7789999999999999999998642 2356666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 33 24578999999998654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.041 Score=55.31 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------------------T~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------------------TKDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 3799999 6678999999999999999998642 2245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 33 24578999999998653
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.065 Score=52.73 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4788985 9999999999999999999999998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.14 Score=53.80 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=70.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH-HHH---HHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~v- 81 (487)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+... ++|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~---~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLN---NADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhc---cCCEEEECCC
Confidence 5899999999999999999999999999976442 211 12110 0 12222 23 23333 389888753
Q ss_pred -CCCh-hHHHHH---------HHHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 82 -KAGA-PVDETI---------KTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 82 -p~~~-~v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
|... .+.... -+++ ..+....|-|-.|++...++.-+...+...|..+.-.+..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 4332 222111 1222 2232234566667777666666677788777765544444443
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.047 Score=53.72 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=56.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|++++.. +.++++.+++ ||+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999988 7899988642 2345666666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764322 24578999999998654
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=49.94 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHH-HHHhhCCCCCCCcCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIK-KAYDRNADLANLLVD 402 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~-~~~~~~~~~~~ll~~ 402 (487)
.+.|+.+|+++|=+-.+.++.++|++.+-+++ ++|.+.+.++-++| --+||.++.-. ..++++. +
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~~-------~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGG-AAGSWILENYGPRMLEGDF-------S 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcc-ccCChHHHhhcchhhcCCC-------C
Confidence 38899999999999999999999999998764 39999999999887 35788887632 2332221 1
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|-|. ++-....++-+...|.+.|+|+|..+.+.+.|...
T Consensus 230 p~F~--v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~ 268 (286)
T COG2084 230 PGFA--VDLMLKDLGLALDAAKELGAPLPLTALAAELYAKA 268 (286)
T ss_pred cchh--HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3332 33445677888899999999999999998866643
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.022 Score=56.85 Aligned_cols=86 Identities=33% Similarity=0.619 Sum_probs=64.1
Q ss_pred HHHHHHHH--hCCCCHHHHHHHHHhhccCc-chhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcC
Q 011394 206 EAYDVLKS--VGKLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLS 282 (487)
Q Consensus 206 Ea~~l~~~--~g~i~~~~i~~v~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~g 282 (487)
|++.++++ .| +|++++.++ |+.+. ++|++++...+++..++.+ ..++.+.++ +.+.+|+++.|.+.|
T Consensus 189 Ea~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~~---~~~~~~~kd---~~~~~~~~~~A~~~~ 258 (301)
T PRK09599 189 EGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPKL---DEISGYVED---SGEGRWTVEEAIDLA 258 (301)
T ss_pred HHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCCH---HHHHHHHHh---hCcHHHHHHHHHHcC
Confidence 67788888 88 999988777 57664 6899999998888543211 113334444 334579999999999
Q ss_pred CCchhHHHHHHHHHhhccc
Q 011394 283 VAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 283 v~~P~~~~a~~~r~~s~~~ 301 (487)
+|+|+++++++.|+.+...
T Consensus 259 ~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 259 VPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CCHHHHHHHHHHHHHhccC
Confidence 9999999988888877654
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.18 Score=53.19 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~v-- 81 (487)
++|.|+|.|..|.+.|+.|++.|+.|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spgi 77 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPGI 77 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCCC
Confidence 58999999999999999999999999999976542 33332210 0 12221 112233333 89998864
Q ss_pred CCC-hhHHHHH---------HHHh-hccc---CCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAG-APVDETI---------KTLS-AYME---KGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~-~~v~~vl---------~~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|+. ..+.... -+++ ..+. ...|-|-.|++...++.-+...+...|....
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~ 140 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTV 140 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeE
Confidence 332 2222221 1122 2221 2346666677776666666777777776543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.097 Score=50.29 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++....... -.. ..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--------------GGK---AIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 3688887 799999999999999999999999988776655432100 000 2233333445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776643
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.025 Score=56.44 Aligned_cols=75 Identities=32% Similarity=0.547 Sum_probs=57.3
Q ss_pred HHHHHHHhhcc-CcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 221 ELQNVFTEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 221 ~i~~v~~~~~~-~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
++.++++.|+. +.++|++++...+.+..+ ++ .+.++.+.||. ++..|+++.|.+.|+|+|++.++++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAED-PK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhhC-CC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 46777788885 458899999888877643 22 24567777764 4556999999999999999999877888877
Q ss_pred cc
Q 011394 300 LK 301 (487)
Q Consensus 300 ~~ 301 (487)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 65
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.057 Score=54.01 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||+||| .|..|..+.+.|.++.+ ++.....+..+ . + .+.++..++ +|++|+|+|++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~------------~---~~~~~~~~~---~DvvFlalp~~ 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D------------A---AARRELLNA---ADVAILCLPDD 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c------------c---cCchhhhcC---CCEEEECCCHH
Confidence 57999999 89999999999998864 33322222111 0 1 122333344 89999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+...++. ..|..|||.|+-.
T Consensus 62 -~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 62 -AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred -HHHHHHHHHH---hCCCEEEECChhh
Confidence 3444444443 4689999999754
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=54.05 Aligned_cols=115 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred cEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~--vp~ 83 (487)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +.... ...+... ++|+||.+ +|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333222 22221 1222333 38988875 333
Q ss_pred Ch-hHHHHH---------HHHh-hccc-CCCEEEecCCCCchhHHHHHHHHHHcCC--eEEecC
Q 011394 84 GA-PVDETI---------KTLS-AYME-KGDCIIDGGNEWYENTERREKAMAELGL--LYLGMG 133 (487)
Q Consensus 84 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~--~~i~~p 133 (487)
.. .+.... -+++ ..+. ...+-|-.|++...++.-+...+...|. .++-.+
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 21 222221 1222 2222 2346666777776666666777777775 454333
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.19 Score=46.18 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=46.7
Q ss_pred cEEEEcccHHHHHHHH--HHHHC----CCcEEEEeCChHHHHHH---HHhhhhc-C-CCCccccCCHHHHHhhcCCCcEE
Q 011394 9 RIGLAGLAVMGQNLAL--NIAEK----GFPISVYNRTTSKVDET---VERAKKE-G-DLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~--~L~~~----G~~V~v~dr~~~~~~~l---~~~~~~~-g-~~~~~~~~s~~e~~~~l~~advI 77 (487)
||+|||.|..-.+.-. -+... +-+|.++|+++++++.. .++..+. + ..++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999998777432 23332 23899999999987643 2222111 0 2256778899999887 9999
Q ss_pred EEecCCC
Q 011394 78 IMLVKAG 84 (487)
Q Consensus 78 i~~vp~~ 84 (487)
|.++..+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=52.51 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+.....++|-|.|. |-+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++..
T Consensus 1 ~~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~--------------~g~~---~~~~~~ 63 (330)
T PRK06139 1 MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA--------------LGAE---VLVVPT 63 (330)
T ss_pred CCcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEe
Confidence 454444456777775 8999999999999999999999999887766543211 0000 222223
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+..+++.+++.+.....+=+++|++...
T Consensus 64 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 64 DVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3455556777776665544444778877643
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.048 Score=54.99 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (487)
.++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4589999999999999999999996 6999999975
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.19 Score=53.23 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
||.|||+|..|.+.|+.|.+.|++|.++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997653
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.17 Score=52.86 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE--------Ee---CChHHHHHHHHhhhhcC--------CC-CccccCCHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKKEG--------DL-PLFGFRDPESF 67 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g--------~~-~~~~~~s~~e~ 67 (487)
.+|+|=|+|++|...|+.|.+.|..|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999998 88 67776544433211100 00 01111 23333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
... +||+.+-|--...-..+..+.+.. .+=++|+..+|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 488888776544322223333321 134688888888 5 444566788999998874
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.22 Score=51.69 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
..|-|+|.|.+|..+++.|.+.|++|.+.|.++ .++..+.+.. -+....+-++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2332222211 1222223333333 3567999999888764
Q ss_pred hHHHHHHHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.-..++... ..+.+ .++++-..+. +..+.++..|...+-.|
T Consensus 315 ~Nl~ivL~a-r~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLAA-KEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333232 33444 4566655432 23455566787776555
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.08 Score=53.78 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDET 46 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 46 (487)
||+|-|.|. |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 578999995 99999999999986 79999999987655443
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.055 Score=54.63 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (487)
||+|||+ |.+|..+|..|+..+. ++.++|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999998654 5999999654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.047 Score=52.78 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
.+|+|.|+| .|.+|..++..|++.||+|++..|++++...+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 367899999 59999999999999999999999998876543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.15 Score=49.00 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|-|+| .|.+|..++..|++.|++|++.+|++++.+.+.+... .. ...+-.=+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 4788888 6999999999999999999999999887665543210 01 2223223444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|....
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666665554444567776654
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.066 Score=52.97 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 4799999 778999999999988 6789988543 2245566666 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 654322 24578999999998654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.32 Score=48.25 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.++|.+....+..++|++.+.++ +++|..++.++.+.+ ..+|+.++...+.+... +.. +
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~~-----~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TFK-----P 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CCC-----C
Confidence 3678899999999999999999999999875 459999999999876 45777776543332221 111 1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
-|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 1221 1224456788889999999999999998877643
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.088 Score=58.54 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+| +|+..|..|++.|. +++++|.+.=....+..+.......+..-+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 8999987643222222211000000011111222323222 266777777654
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-. .+.++++. ..-++|||++-.. ..-..+.+.+.++++.++.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 22 33344443 3458999998764 3333345666778888887654444
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=59.12 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+... ....+-.-+...++.+..+ .+++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 788888765433333332110 0000011122233333322 266667776554
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pvsgg 137 (487)
..++.++++ +..-++|||+......+. ..+.+.+.+.++.++.+.+.|-
T Consensus 411 -I~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 411 -VAAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred -CCHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 223333333 345589999887643333 3445566788999998876553
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.43 Score=51.56 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=50.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCC---CCccc----cCCHHHHHhhcCCCc
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGD---LPLFG----FRDPESFVNSIQKPR 75 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~---~~~~~----~~s~~e~~~~l~~ad 75 (487)
.|.|.| .|.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 577777 59999999999999999999999999987766542110 000 01111 234445545556699
Q ss_pred EEEEecC
Q 011394 76 VIIMLVK 82 (487)
Q Consensus 76 vIi~~vp 82 (487)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.14 Score=52.31 Aligned_cols=119 Identities=10% Similarity=0.113 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh-hh-cCCCCc--cccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-KK-EGDLPL--FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~-~~-~g~~~~--~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+.++. .. ....+- .-+...++....+. +++. +.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~--~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV--PHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE--EEe
Confidence 589999999999999999999997 8889987632222222111 00 000000 01112222223221 3433 333
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
..- -.+.+. .+..-++|++|.-... .-..+.+.+.+.++.|+++++.
T Consensus 254 ~~I-~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 254 EYI-DEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred ecC-CHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 221 111222 2445689999876542 2223456667789999987654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.17 Score=50.08 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=74.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHH---Hh---hCCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKA---YD---RNADLA 397 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~---~~---~~~~~~ 397 (487)
.+.++.+|+++|.+.++.+..++|++.+.++ .++|..++.++.+.+. -+|+.++..... +. .+.+.
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~- 230 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNPVPGVMPQAPASNGY- 230 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCCCccccccccccCCC-
Confidence 3788999999999999999999999999875 3499999999998763 356654422110 00 00010
Q ss_pred CCcCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 398 NLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 398 ~ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
++-| .+.-....++.+...|.+.|+|+|....+...|...
T Consensus 231 ----~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 231 ----QGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred ----CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1222 122334567889999999999999998888766543
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=48.79 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHH-HH-HHHhhCCCCCCCcC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDR-IK-KAYDRNADLANLLV 401 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~-~~-~~~~~~~~~~~ll~ 401 (487)
.+.++.+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+.
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------
Confidence 37889999999999999999999999998853 499999999988763 33443332 21 1221111
Q ss_pred ChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 402 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
++.| .++-....++-+...|.+.|+|+|....+...|..
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1223 23334566788999999999999999988876654
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.028 Score=58.53 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=57.21 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+.-.++.+.++ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3589999999999999999999997 788888764333333322110 0000000111122222222 256666666544
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+.+.. .+..-++|||+.......+ ..+.+.+...++.++.+++.|
T Consensus 122 i~-~~n~~~---~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDA---FLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHH---HHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 21 222233 3445689999987542233 345566777899999877654
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.09 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++.+.+++ ||+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 678999999999988 5788888643 2245566666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+..+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 765332 24578999999998754
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.077 Score=51.70 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=58.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 479999966 479999999999999999998542 245555666 9999999976643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ .+.+.+|.+|||.+...
T Consensus 213 i~------~d~vk~gavVIDVGinr 231 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred cc------cccccCCCEEEecCCcc
Confidence 33 35678999999998764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.2 Score=48.86 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++... . ..++..=+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCCHHH
Confidence 4677888 59999999999999999999999998876543321 1 2333334445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666665544444677776543
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.094 Score=53.58 Aligned_cols=97 Identities=12% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHh-hhhc--C---C--CCccc-cCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKKE--G---D--LPLFG-FRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~~--g---~--~~~~~-~~s~~e~~~~l~~ad 75 (487)
|+||+|+| .|.+|..+.+.|.++.. ++.++.++++...+.... .... + . ..+.. ..+++++ .+ +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 99999999999998755 888876665443221110 0000 0 0 01111 1234443 44 99
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|+.++|.+ ....+.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999986 3344444332 4688899998753
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=48.54 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+.++|-|+| .|.+|..++..|+++|++|++.+|+++..+++.+.... . . ..++..=+.+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~ 70 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADP 70 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCH
Confidence 345788997 79999999999999999999999998766655432210 0 0 12222223333
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+..+++++.+.+.+-+.||++....
T Consensus 71 ~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 71 AQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 445555665555555557777766543
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.082 Score=53.81 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCC-CcEEEE-eCChHHHHHHHHhhhh-----cCC--CCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKK-----EGD--LPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~g~--~~~~~~~s~~e~~~~l~~advI 77 (487)
+||+|+| .|.||..+++.|.++. ++|... +.+.+.-+.+.+.... ... ..+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 5899999 5999999999998876 577655 5543322222211100 000 00111111112223 49999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|+|.+. ...+...+ ...|..|||.|...
T Consensus 78 f~a~p~~~-s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSEV-AEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHHH-HHHHHHHH---HHCCCEEEECChhh
Confidence 99999873 33343333 34688899998753
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=53.09 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+.++.. .....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999998 78899977543333332211 00000000111122222221 255556555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-..+. . ...+..-++|||++... ..-..+.+.+...++.|+.+.+.|-
T Consensus 121 i~~~~-~---~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 121 LDPSN-A---VELFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred CChhH-H---HHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 11111 2 22344568999987543 3333355666778888887766543
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.39 Score=50.60 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=67.7
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
||.-. .++|.|||+|..|.+.++.|++.|++|+++|..+.. .+.+. .+. .+.......+.++. .|+||
T Consensus 1 ~~~~~-~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~-----~~~~~~~~~~~~~~---~d~vv 70 (438)
T PRK03806 1 MADYQ-GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENV-----ERHTGSLNDEWLLA---ADLIV 70 (438)
T ss_pred CcccC-CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCC-----EEEeCCCCHHHhcC---CCEEE
Confidence 55532 357999999999999999999999999999975432 22332 121 11111122233343 78766
Q ss_pred Eec--CCC-hhHHHHH---------HHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 79 MLV--KAG-APVDETI---------KTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 79 ~~v--p~~-~~v~~vl---------~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+- |.+ ..+.... .++...+.+ ..+-|-.|++...++.-+...|...|..+.
T Consensus 71 ~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 71 ASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred ECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 643 222 1222211 123222222 245566777776666666777777776543
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.088 Score=52.12 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++++..++ ||+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------------------TDDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 677999999999987 7899988542 2245566666 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 654322 24578999999998654
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.11 Score=51.79 Aligned_cols=80 Identities=13% Similarity=0.249 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.||+|+| .|+.|.-|.+.|..+.+ ++....-+.. . . ..+.+++.++ +|++|+|+|++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~--------~-~~~~~~~~~~---~D~vFlalp~~- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------K--------D-AAERAKLLNA---ADVAILCLPDD- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------c--------C-cCCHhHhhcC---CCEEEECCCHH-
Confidence 4799998 89999999999998853 3332221111 0 0 1234455555 99999999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+....+ ...|..|||.|+..
T Consensus 61 ~s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 61 AAREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---HhCCCEEEECChHH
Confidence 344444433 24688999999753
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=51.41 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=30.5
Q ss_pred EEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHh
Q 011394 10 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVER 49 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~ 49 (487)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....++..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~ 42 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKE 42 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHH
Confidence 69999999999999998754 45666 457777766666553
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.2 Score=47.55 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi--~~vp~~ 84 (487)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+...... . . +++.+ .=+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--------------A--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--------------c--C---CceEEEEccCCCH
Confidence 5788997 69999999999999999999999998876654432210 0 0 22222 223344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+..+++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 45566666655544445677776643
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=48.75 Aligned_cols=117 Identities=15% Similarity=0.295 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE--------EeCChHHHHHHHHhhhhcCCCCccccC----------CHH-HHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YNRTTSKVDETVERAKKEGDLPLFGFR----------DPE-SFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v--------~dr~~~~~~~l~~~~~~~g~~~~~~~~----------s~~-e~~ 68 (487)
+++.|-|.|++|...|+.|.+.|..|.+ ||.+.-.++++.+.....+. ++.... +.+ ++.
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEeccccccc
Confidence 5899999999999999999999987765 46665555555542221110 011111 221 444
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.. +||+++-|--...-..+.+.. .+++ -++|+...|.... .+-.+.|.++|+.++.-
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred cc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 32 499999996444222222220 3332 3688888887543 33345889999988854
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.35 Score=51.29 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=67.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... .... ....+.... +|+||.+ +|...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIA-ALSDSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceec-cCChhHhhC---CCEEEECCCCCCCC
Confidence 58999999999999999998 599999999664433222211000 0111 112223333 8888775 33322
Q ss_pred h-HHHHH---------HHHh-hcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 P-VDETI---------KTLS-AYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
. +.... -+++ ..... ..|-|-.|++...++.-+...+...|..+.-.+..|-
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~ 141 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV 141 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCH
Confidence 1 22111 1222 22222 2455666777766666667777777766554444443
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.39 Score=44.01 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|++-|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888886668888999999999999999999887666543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.63 Score=42.70 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=78.0
Q ss_pred cEEEEc--ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 9 RIGLAG--LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 9 kIgiIG--lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+-=|| +|.++.-+| ++-..-+|+.+|++++.++...+....-+..++.. ..+..++..++.++|.||+--. .
T Consensus 37 ~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~ 112 (187)
T COG2242 37 RLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--G 112 (187)
T ss_pred EEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--C
Confidence 344455 556666666 44455699999999998776554333211012222 2234455555667999999865 3
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCC-eEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGL-LYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~i~~pvsgg 137 (487)
.++.+++....++++| .+|++..|. ++.....+.+++.|+ ..+-..++-+
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 6899999888888775 577777765 344456677788887 5555555443
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.052 Score=55.19 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=55.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||+||| .|..|..|.+.|.+++|++. ++.++...-+.+.-.+. .+...+ +.+++ +. +|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 99999999999999888643 44444332222211111 112211 22333 43 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
. ...+....+ +..|..|||.|+.
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSA 94 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHH
Confidence 6 344444433 3468899999864
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.35 Score=51.47 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HH---HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KV---DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV- 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~---~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v- 81 (487)
.++|+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. .++.+.+. ........+.... +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL------LVETEASAQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE------EEeCCCChHHccC---CCEEEECCC
Confidence 35899999999999999999999999999995432 22 23322110 1111122333343 89988863
Q ss_pred -CCChh-HHHHH---------HHH-hhc-cc-----CCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 82 -KAGAP-VDETI---------KTL-SAY-ME-----KGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 82 -p~~~~-v~~vl---------~~l-~~~-l~-----~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
|.... +.... -++ ... .. ...|-|-.|++...++.-+...+...|...
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~ 144 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRT 144 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 43322 22211 112 111 21 134666667777666666677777766433
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.22 Score=50.50 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=56.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE--EEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI--IMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI--i~~vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+..... . +++. ..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 4577776 699999999999999999999999988877655432110 0 2222 2223445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+...+.+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56667766666655555788876643
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.21 Score=47.29 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|+| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 4688887 6999999999999999999999999887766544
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.28 Score=47.54 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=53.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+... .. ..++..=+.+...
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 66 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATDITDDAA 66 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEecCCCHHH
Confidence 4677777 5999999999999999999999999887666543210 00 2222223344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 66666665554444466776654
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.53 Score=44.36 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|..|..=++.|++.|-+|+++..+. +.+..+.+.+... -+...-.++++. .+++||.++.+. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 479999999999999999999999999998776 5555555544210 011122333333 388999999876 4
Q ss_pred HHHHH
Q 011394 87 VDETI 91 (487)
Q Consensus 87 v~~vl 91 (487)
+..-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 44444
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.25 Score=52.51 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCcEEEEcc----------cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cC-CCCccc
Q 011394 7 LTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EG-DLPLFG 60 (487)
Q Consensus 7 ~~kIgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g-~~~~~~ 60 (487)
-++|+|+|+ ..-...++..|.+.|.+|.+||+--+..+. .+.... .. ..++..
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQI-QRDLSMNKFDWDHPRHLQPMSPTAVKQVSV 402 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHH-HHHhhcccccccccccccccccccccceee
Confidence 358999998 457789999999999999999986433211 111000 00 001345
Q ss_pred cCCHHHHHhhcCCCcEEEEecCCChhHHHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 61 ~~s~~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.++.++++. +|+|++++..+ ..+.. ++.+.+.+.+..+|+|+-+.... +.+.+.|+.|++.+
T Consensus 403 ~~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 403 VWDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred eCCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 6677777776 99999999876 34432 34555555555589999888742 22335588887654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.26 Score=47.05 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=35.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
.+|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 4566776 89999999999999999999999999887776543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.24 Score=48.54 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 4687887 6999999999999999999999999887665543210 00 2222233444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 566666655544444677776544
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.26 Score=56.22 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCcEEEEcccHHHHHH-HHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEe--c
Q 011394 7 LTRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIML--V 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~--v 81 (487)
+++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+... .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999997 9999999999999997643 334443322 2221 11223333 38988875 3
Q ss_pred CCCh-hHHHHH---------HHHhhcccC--CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 82 KAGA-PVDETI---------KTLSAYMEK--GDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
|... .+.... -+++..+.+ ..|-|-.|++...++.-+...+...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222211 122222222 246666777776666666777777664
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.4 Score=50.16 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-----CCcEEEEeCC-hHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~-----G~~V~v~dr~-~~~~~~l~---~~~~~~-g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|||+|||.|..-.+ +...|+.. +-+|.++|.+ +++++... ++.... + ..++..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 68999999997443 44555542 3589999999 78864422 221111 0 1246778889988877 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999987443
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.28 Score=47.81 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=53.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|+++-|.| .|-+|..+++.|++.|++|++.+|++++.+.+.+. . .+.+..=+.+..
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~ 57 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGA 57 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHH
Confidence 34566776 68999999999999999999999998766544321 0 222222334444
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.+...+=+++|++...
T Consensus 58 ~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 58 ALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5666666665544444777777653
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.18 Score=48.52 Aligned_cols=117 Identities=9% Similarity=0.107 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC-C--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG-D--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g-~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.-..++|.|......-....+.- .+|.+|+|+++..+++++...+.- . ..+..+.+.++++.. +|+|+.|+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~at 215 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGAT 215 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecc
Confidence 34788999999988776655442 389999999999988887443210 0 024567788888887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.... .+ ....+.||+.| |.-.+.-+...+....+...+.-|+|.-
T Consensus 216 lsteP---il--fgewlkpgthI-dlVGsf~p~mhEcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 216 LSTEP---IL--FGEWLKPGTHI-DLVGSFKPVMHECDDELIQSACVFVDSR 261 (333)
T ss_pred ccCCc---ee--eeeeecCCceE-eeeccCCchHHHHhHHHhhhheEEEecc
Confidence 86533 22 13456777554 5444444566677677767777888863
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=51.42 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=50.1
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhh-cC-CCCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQN--LALNIAEK-----GFPISVYNRTTSKVDETV---ERAKK-EG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|||+|||.|.. .. +...|+.. +-+|.++|.++++++... ++... .+ ..++..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 69999999985 33 44445443 358999999998865532 22111 11 2257778899998887 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||.++-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998655
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.32 Score=46.57 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC--
Q 011394 33 ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-- 110 (487)
Q Consensus 33 V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 110 (487)
|.+||+++++.+.+.++. ++..+++++++++. ++|+|++|.|+... .+.... .+..|+-|+..+.+
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~H-~e~a~~---aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEAV-KEYAEK---ILKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHHH-HHHHHH---HHHCCCCEEEECCccc
Confidence 458999999998888754 24578899998752 49999999998743 333333 34456555445554
Q ss_pred -CchhHHHHHHHHHHcCCeEE
Q 011394 111 -WYENTERREKAMAELGLLYL 130 (487)
Q Consensus 111 -~~~~~~~~~~~l~~~g~~~i 130 (487)
.....+++.+..++.|..+.
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVY 93 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEE
Confidence 23445666666777776554
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.32 Score=47.46 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++++-|-| .+-+|..+|+.|+++||+|++..|+.++++++.++.... .. ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCCChh
Confidence 44566667 789999999999999999999999999999988765421 00 01 334433345555
Q ss_pred hHHHHHHHHhhcccCCCEEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.+..+.+++.....+=+++|+..
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEECC
Confidence 66666666665433446666653
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.31 Score=46.67 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|+|+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+.+..+ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 899998775333333222100 0000000111122222222 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
...+.+..+. ...-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1112222222 12357999986544 333456677778889888764333
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.25 Score=48.38 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35777775 99999999999999999999999988766544
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.4 Score=46.19 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=34.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+.+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888885 99999999999999999999999987665544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=47.51 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=57.8
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+++ ++|-|.| .|.+|..+|..|++.|++|.+.+|++++.+++.+..... .. . .. ..++..
T Consensus 1 ~~~~---k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-------~~--~---~~---~~~~~~ 62 (256)
T PRK09186 1 MLKG---KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKE-------FK--S---KK---LSLVEL 62 (256)
T ss_pred CCCC---CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhh-------cC--C---Cc---eeEEEe
Confidence 5544 3677887 589999999999999999999999988876655432100 00 0 00 122233
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
=+.+..++..+++++.....+=++||++.
T Consensus 63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 63 DITDQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 34455566677766655544457777765
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.38 Score=50.40 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=50.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~-g-~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||.|.. .-.+...|+.. +-+|.++|.++++.+... ++.... + ..++..+++.+++.+. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 68999999984 22355555543 358999999998865432 221111 1 2257778899998887 999
Q ss_pred EEEecCCC
Q 011394 77 IIMLVKAG 84 (487)
Q Consensus 77 Ii~~vp~~ 84 (487)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.34 Score=46.80 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|+++-|+| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .. ..++..=+.+..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~ 61 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA----------------GN---AWTGALDVTDRA 61 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHH
Confidence 35688887 79999999999999999999999999887776543210 01 233333344445
Q ss_pred hHHHHHHHHhhc-ccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAY-MEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~-l~~g~iiId~st~ 110 (487)
.+..+++.+... ..+=++||++...
T Consensus 62 ~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 62 AWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 556666555442 2233677766543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.35 Score=46.52 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|+| .|.+|..++..|++.|++|++.+|++++.+.+.+.... .. ...+-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 3577777 48999999999999999999999998877665542210 01 2233333444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...++++.....+=+.||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555555444444677776654
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.29 Score=50.45 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCCCcEEEE----c-ccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 5 KQLTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 5 ~~~~kIgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.++++|.|+ | .|.+|..++..|.+.||+|++.+|++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 345789999 6 6999999999999999999999998765
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.29 Score=46.85 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 46888885 99999999999999999999999987665544322100 000 1222223344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555445788887664
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.13 Score=50.58 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++.||| ...+|.+++..|.+ ++.+|++++.+.. ++.+.+++ +|+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~---------------------~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP---------------------DLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 4799999 67889999999998 6789998875422 35555666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+.-+. ...+++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 764322 13468999999998543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.2 Score=49.49 Aligned_cols=119 Identities=11% Similarity=0.170 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|-+|..+|++|+.+|. +|+++|.+.-....+.++---. ...+-.-+....+.++++ .+++-+......
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL-Np~V~V~~~~~~- 97 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL-NPYVPVTVSTGP- 97 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 7999998754444333210000 000000011112222222 155555555432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
...+ .+.+-++||++.. .+.....+.+.+.+.++.|+.+...|
T Consensus 98 ~~~~-------~l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 LTTD-------ELLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred CCHH-------HHhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1111 1234468888754 44555566777888899998876543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.062 Score=54.41 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
..++||||| .|..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. ++++|++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 346899999 59999999999998544 55544322211111110010 12222 344432 12389999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++ ....+...+. ..|..|||.|...
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 3444444332 4689999999654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.26 Score=47.67 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=55.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.++... . .. ...+-.=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~-~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE--------------Y-GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------c-CC---ceEEEcCCCCHHH
Confidence 4788887 68899999999999999999999998877665443210 0 00 2222223444556
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++++.....+=+++|+...
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 67777666655545567777654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.051 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=33.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 67899999999999999999999999999998865
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.25 Score=50.49 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=58.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC---CHHHHHhhc---CCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR---DPESFVNSI---QKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~---s~~e~~~~l---~~advIi~~v 81 (487)
++.|+|+|.+|...++.+...|. +|++.|+++++++.+.+.+... ..... ...+....+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998888888885 7888899999998776644321 11111 111111111 1378888887
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.... .+++....++++-.|+..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 6443 3334444555655555555443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.4 Score=46.92 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|+.+|.+|++.| -+++++|.+.-....+..+.... ...+-.-+.-..+-...+ .+++-+.+++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 358999999999999999999999 48999997754333332211000 000000011112222221 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
- ..+....+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1 1122222321 2457999987543 334456677788888888663
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.15 Score=50.49 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.+ .+.+|+++..+.. ++++.++. ||+||.+++
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~---------------------~l~~~~~~---ADIvI~Avg 215 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK---------------------DIPSYTRQ---ADILIAAIG 215 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 4799999 67789999999987 6889998876532 34555665 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+.- +. ...+++|.+|||.+...
T Consensus 216 ~~~l----i~--~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 216 KARF----IT--ADMVKPGAVVIDVGINR 238 (295)
T ss_pred ccCc----cC--HHHcCCCCEEEEeeccc
Confidence 6532 21 23458999999998653
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.38 Score=46.29 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.++.+++.+... .. ...+-.=+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----------------PA---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHHH
Confidence 3577777 6999999999999999999999999887766543211 00 1122222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666665554445567777654
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.29 Score=47.25 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-----------CcEEEEeCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 40 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 40 (487)
...+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3468999999999999999999874 2889998764
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.31 Score=46.75 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 36889997 9999999999999999999999998876544
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.28 Score=47.17 Aligned_cols=85 Identities=11% Similarity=0.157 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+++...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 455555 88999999999999999999999998876665443210 0000 11222224445566
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66676666554455777777654
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.31 Score=50.62 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCcEEEEcccHHHHHHH-HHHHHC-----CCcEEEEeCChHHHHHH---HHhhh-hcC-CCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLA-LNIAEK-----GFPISVYNRTTSKVDET---VERAK-KEG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA-~~L~~~-----G~~V~v~dr~~~~~~~l---~~~~~-~~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
+.||+|||.|+.+.+.- ..+... +.++.++|.++++.+.. .++.. ..| ..++..++|.+++.+. +|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---Ad 79 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---AD 79 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---CC
Confidence 46899999999987742 223322 45899999999886632 11111 110 1256778899999887 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+|+.++-.+
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.47 Score=45.89 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+... .. ...+..=+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 3566776 6889999999999999999999999887766543211 01 2223233344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544455678777654
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.2 Score=51.47 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+.++... ....+-.-+....+.++.+ .+++-+...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 589999999999999999999997 999999875433333322100 0000001111222222222 1455555554321
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
. .+.+. ..+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 121 ~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 T-AENAV---ELLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred C-HHHHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1 11222 2344568999998763 333334556677788888776654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.47 Score=45.80 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+..-..+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.++... . ... ....++..
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------~------~~~-~~~~~~~~ 65 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------D------VAG-ARVLAVPA 65 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------c------cCC-ceEEEEEc
Confidence 44333334566666 78999999999999999999999998877766543311 0 000 00122222
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+...++.+++++.....+=+++|++...
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 3444455666666666555455677776543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.06 Score=56.07 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.44 Score=45.17 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4788887 5889999999999999999999999988766543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.085 Score=53.18 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=33.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
|++|||||-|-.|..|+..-.+-|++|.+.|.+++.-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~P 37 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAP 37 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCc
Confidence 4689999999999999999999999999999887653
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.34 Score=46.61 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++++|+++..+++.+.... .-.. ...+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA--------------AGGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEEccCCCHHH
Confidence 4677776 69999999999999999999999998776655443211 0000 2233333445555
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+..+++++.....+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444566666543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.32 Score=48.29 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+|..|++.|++|.+.+|++++.+++.+.... .... ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4577777 59999999999999999999999998887766543211 0000 2222223344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555455777776543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.27 Score=47.43 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 4677776 8999999999999999999999999887665543211 00 0 1 2333333444455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.++++.....+-+++|+....
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665544444778776643
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.084 Score=40.21 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.23 Score=48.67 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=52.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhc-C-CCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKE-G-DLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~-g-~~~~~~-~~s~~e~~~~l~~advIi~~vp 82 (487)
.||.|||.|.+-...-.-.... |..|..+|++++..+...+..... + ..++.. +.+..++..++...|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999976654433333 457889999999765543322100 0 002222 2334344444555899999865
Q ss_pred CC---hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 83 AG---APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 83 ~~---~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
-+ ..-..+++.+...+++|..|+--+.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 43 2456788999999999998887654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.13 Score=52.28 Aligned_cols=89 Identities=12% Similarity=0.247 Sum_probs=55.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-CCCc---EEEEeCC--hHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE-KGFP---ISVYNRT--TSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~ 79 (487)
+|||||| .|..|..|.+.|.+ ..++ +..+... ..+.-.+.. . .+... .+++++ .. .|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~--~-----~l~v~~~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG--R-----EIIIQEAKINSF-EG---VDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC--c-----ceEEEeCCHHHh-cC---CCEEEE
Confidence 5899999 59999999999995 5666 5444322 222111110 0 11211 234444 44 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|.+ ....+...+ ...|..|||.|+..
T Consensus 75 a~~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 99986 444444433 34789999999754
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.34 Score=46.64 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------QGLS---AHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCce---EEEEEccCCCHHH
Confidence 4688887 69999999999999999999999998876654432210 0000 2222222344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+.||+....
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666655544455677776543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.15 Score=50.95 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCc---EEEE--eCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+++|||+| .|.+|+.|...|.+..+. +.++ .|+..+. -++... .+..-.+..+... +++.|++|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~-------~~~v~~~~~~~~~-~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK-------SIGVPEDAADEFV-FSDVDIVFF 72 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc-------cccCccccccccc-cccCCEEEE
Confidence 46899997 899999999999997553 3344 3333322 222211 1122221111111 235999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+.. ..+.+...+. ..|.+|||.|+..
T Consensus 73 ~ag~~-~s~~~~p~~~---~~G~~VIdnsSa~ 100 (334)
T COG0136 73 AAGGS-VSKEVEPKAA---EAGCVVIDNSSAF 100 (334)
T ss_pred eCchH-HHHHHHHHHH---HcCCEEEeCCccc
Confidence 99865 3344444443 4689999988754
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.53 Score=44.71 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.=+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 35788887 7999999999999999999999999887765543210 01 222222234445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.+...+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655555777777654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.51 Score=46.20 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEccc---HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE-EecCCCh
Q 011394 10 IGLAGLA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII-MLVKAGA 85 (487)
Q Consensus 10 IgiIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi-~~vp~~~ 85 (487)
+-|.|.+ -+|..+|+.|++.|++|.+.+|+.+..+.+.+.. +.+. ..+.+ .=+.+..
T Consensus 10 ~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~------------------~~~g-~~~~~~~Dv~d~~ 70 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLA------------------ESLG-SDFVLPCDVEDIA 70 (271)
T ss_pred EEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHH------------------HhcC-CceEEeCCCCCHH
Confidence 4455876 6999999999999999999998854333222110 0000 11111 1133445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.+++.+.....+=+++|+....
T Consensus 71 ~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 71 SVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcc
Confidence 6777777766555455677776543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.54 Score=45.69 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=36.3
Q ss_pred CCCCCCCCcEE-EEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 1 MVEGKQLTRIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 1 ~~~~~~~~kIg-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|++-.-..|+. |.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45433223444 455 5789999999999999999999999888766554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.099 Score=40.97 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
||.|||.|..|.-+|..|++.|.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999987653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.23 Score=48.64 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=64.9
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE 89 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~ 89 (487)
+.|.|.|.+|..-|+.|...|..|++...+|=.+-+.+-++ .+ ..+++|+++. .|+++.+.-.. +-
T Consensus 217 ~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG-------~~-V~tm~ea~~e---~difVTtTGc~---di 282 (434)
T KOG1370|consen 217 AVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEG-------YE-VTTLEEAIRE---VDIFVTTTGCK---DI 282 (434)
T ss_pred EEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhc-------cE-eeeHHHhhhc---CCEEEEccCCc---ch
Confidence 44559999999999999999999999999986654444333 22 5689999987 89998887543 33
Q ss_pred HHHHHhhcccCCCEEEecCCC
Q 011394 90 TIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 90 vl~~l~~~l~~g~iiId~st~ 110 (487)
+..+-...++.+.||.+.+..
T Consensus 283 i~~~H~~~mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 283 ITGEHFDQMKNDAIVCNIGHF 303 (434)
T ss_pred hhHHHHHhCcCCcEEeccccc
Confidence 445556667788888877654
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.33 Score=49.84 Aligned_cols=114 Identities=16% Similarity=0.293 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--------HHHHHHHhhhhcC---C-CCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--------KVDETVERAKKEG---D-LPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~l~~~~~~~g---~-~~~~~~~s~~e~~~~l~~ad 75 (487)
++|+|=|.|++|...|+.|.+.|.+|++++-+.. ..+++.+.....+ . .+.+..+. +++... +||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 4899999999999999999999999998865544 1111111000000 0 01222222 444332 388
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+.+-|.-...-......+ +.. ++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 887765443222222233 322 3888888764 344556667789988774
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.37 Score=46.33 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+|+.|+++|++|++.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 4677776 699999999999999999999999987766554432110 000 2233333444456
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+.||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666666665555445677776643
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.24 Score=51.38 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|..++.+|+..|. +++++|.+.=....+.++... ....+-.-+...++.++.+ .+++-|.+.+..
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETR 116 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEecc
Confidence 3589999999999999999999997 888998774433333222100 0000001111222222221 255555655532
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-.-+. ....+..-++|||++-.. ..-..+.+.+...++.++.+.+.|-
T Consensus 117 ~~~~~----~~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSEN----ALDILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHh----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 11111 122345668999997654 2223344556677888887776654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.26 Score=49.07 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++.++ +|+|+..+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999999999999999999999999876543211 011 24566677887776 9999999885211
Q ss_pred --HHHH-------H-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 87 --VDET-------I-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 87 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++.. + .+.+..++++.+++ .+...|.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 1111 1 34667788998655 45555442 244668899888654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.071 Score=54.65 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.078 Score=54.83 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 35899999999999999999999999999999864
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.46 Score=49.76 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE-Ee----------CChHHHHHHHHhhhh-cC---CC----CccccCCHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV-YN----------RTTSKVDETVERAKK-EG---DL----PLFGFRDPESFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~l~~~~~~-~g---~~----~~~~~~s~~e~~ 68 (487)
++|.|.|.|++|...|+.|.+.|..|++ .| .+.+++..+.+.... .+ .+ +.. ..+.+++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCcccc
Confidence 5899999999999999999999999986 56 555444311110000 00 00 011 11334442
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+||+++-|.-...-..+....+.. +|. +|+..+|. |.+. +..+.+.++|+.++.
T Consensus 308 ~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P~t~-eA~~~L~~rgI~~~P 364 (444)
T PRK14031 308 G--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-PSTP-EAIKVFQDAKILYAP 364 (444)
T ss_pred c--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-CCCH-HHHHHHHHCCcEEeC
Confidence 2 1489988876544222233333322 343 56666666 5544 456778889988874
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.73 Score=48.55 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHH--HHHHHHhhhhcCCCCccc--c-CCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKKEGDLPLFG--F-RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~--~-~s~~e~~~~l~~advIi~ 79 (487)
+++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+.+.+ + +.. . .+.+. +.+ +|+||.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~~-~~~---~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLEW-LLE---ADLVVT 74 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChHH-hcc---CCEEEE
Confidence 46899999999999999999987 6899999976432 223321 2 222 1 23333 343 898877
Q ss_pred ec--CCCh-hHHHHH---------HHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 80 LV--KAGA-PVDETI---------KTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 80 ~v--p~~~-~v~~vl---------~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+- |... .+.... -+++. .+....|-|-.|++...++.-+...+...|..+.-.+..|
T Consensus 75 SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG 144 (438)
T PRK04663 75 NPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIG 144 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccC
Confidence 53 3322 222211 12322 2232345566667765556556677777776544333333
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.41 Score=46.43 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=55.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4677776 66899999999999999999999998877665543210 0000 1222233455556
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66667666655545577887654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.46 Score=45.14 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=36.8
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
|++.-..++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus 1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 1 MAQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred CCccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 44333334677886 779999999999999999999999987765544
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.39 Score=45.74 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=35.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 7999999999999999999999999876655443
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.26 Score=49.37 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||.|||+|.+|..++++|+..|. +++++|.+.-....+.++-.. ....+-.-+....+.++.+ .+++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc--
Confidence 68999999999999999999997 889999876544444332100 0000000111122222222 144545444322
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.+. ......+..-++||++.-. +..-..+.+.+...++.|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011234456888888654 3333345667778899999987655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.31 Score=46.75 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=67.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||.|||+|..|..++++|+..|+ +++++|.+.=....+.++-.. ....+-.-+....+.++++ .+++=+.+....-.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~-np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDR-NPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHH-CCCCEEEEEeccCC
Confidence 58999999999999999999997 888999875443333322100 0000000011122222221 14544544433210
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.... -...+..-++||++.... ..-..+.+.+...++.+++++..|
T Consensus 80 ~~~~~--~~~f~~~~DvVi~a~Dn~-~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 80 PEQDF--NDTFFEQFHIIVNALDNI-IARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred hhhhc--hHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcccC
Confidence 00111 012344568999886643 333335566677889999887654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.38 Score=46.01 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|+++..+++.+.... .-.. ...+..=+.+...
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 64 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDE 64 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHH
Confidence 3577777 79999999999999999999999998877665543210 0000 1222222344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.+.+.+=++||.+..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 65 IADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666655555566666553
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.81 Score=44.23 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=53.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi--~~vp~~~ 85 (487)
.+-|.| .|.+|..+++.|++.|++|++.+|++++.++..+.... .... .++.+ .=+.+..
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~D~~~~~ 72 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE--------------KFPG---ARLLAARCDVLDEA 72 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--------------hCCC---ceEEEEEecCCCHH
Confidence 455556 57899999999999999999999998877665443211 0000 12222 2244445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|++...
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 73 DVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 6666666665544444677776643
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.36 Score=46.88 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+..|+-|-| .|.+|+.....+.+.|..+ +-..+|.+.-... .++.++++.+|+++.. .+|+-++.||++
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~yGt~~-V~GvtPgkgG~~~--------~g~PVf~tV~EA~~~~-~a~~svI~Vp~~ 76 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAYGTKI-VGGVTPGKGGQTI--------LGLPVFNTVEEAVKET-GANASVIFVPPP 76 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHhCCce-eecccCCCCceEE--------cCccHHHHHHHHHHhh-CCCEEEEecCcH
Confidence 346788888 8999999999999999863 3344444321111 1356788999999876 699999999998
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.+.+.+++.+...+ .-+++-+-++.+.++.++.+.++++|...++
T Consensus 77 ~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG 121 (293)
T COG0074 77 FAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIG 121 (293)
T ss_pred HHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence 87777777665433 2455555666777888888888999987774
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.5 Score=45.30 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4677887 6899999999999999999999999887665544
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.097 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
..+.+|.|||.|..|..+|..|+++|++|.++|+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 445689999999999999999999999999999875
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.59 Score=45.46 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ..++..=+.+...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------------------L---VVGGPLDVTDPAS 64 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------------c---ceEEEccCCCHHH
Confidence 4677887 5999999999999999999999999988766543210 1 2222222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666665554444466666544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.65 Score=45.50 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.||+.+..++..+.... .. .++.++. +.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4677776 68999999999999999999999998776655432210 01 2332222 3344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666655544445777777654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.58 Score=44.64 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEe-----c
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIML-----V 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~-----v 81 (487)
++|-=||+| |..++.-|++.|.+|++.|.+++.++.........+ ..+. ...+.+|+...=+.-|+|+++ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 467778888 568999999999999999999998876654433221 1111 234566666532347988775 3
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEec
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDG 107 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~ 107 (487)
|++ +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 55777788888888766543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.14 Score=52.33 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCcEEEEc-ccHHHHHHHH-HHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLAL-NIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|++||||| .|.+|.-|.+ .|.+..++ +..+..... ........... ..+....+.+++ .+ +|++|+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 46999999 5999999998 55555666 666544311 11111110000 011111233444 33 99999999
Q ss_pred CCChhHHHHHHHHhhcccCC--CEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKG--DCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g--~iiId~st~~ 111 (487)
|.+ ....+...+. ..| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 876 4444444433 357 5799998653
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.65 Score=45.49 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCcEE-EEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 7 LTRIG-LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 7 ~~kIg-iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|.|+. |.|.|-+|..+|+.|+ .|++|++.+|++++.+++.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~ 42 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAK 42 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH
Confidence 34544 4589999999999997 79999999999877665543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.57 Score=45.64 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 7999999999999999999999999887665543210 01 2233333444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566665555444444677776543
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.43 Score=49.71 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=62.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|...
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996543221 11111 2222 2 22221 0138888765 44332
Q ss_pred -hHH---HHHH--HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 86 -PVD---ETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 86 -~v~---~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+. .++. +++..+.+..|-|-.|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 121 2221 22222223356666777776666656677777663
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.69 Score=44.07 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 4677887 699999999999999999999999977665544
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.13 Score=52.97 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=33.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 568999999999999999999999999999988654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.58 Score=45.28 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
+++-|+| .|-+|..+++.|++.|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3566666 678999999999999999999999987766654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.83 Score=44.25 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+..... ++. +.-++...-...|+|+..... ..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~---~~~~~~~~~~~fD~Vvani~~-~~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVE---LNVYLPQGDLKADVIVANILA-NP 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCC---ceEEEccCCCCcCEEEEcCcH-HH
Confidence 5789999998 6 455566777775 999999999887766543321 110 000010000026888765543 34
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+..++..+...+++|-.++-.+. .......+.+.+...|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEEE
Confidence 66677888888988877765433 334455566677777876654
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.17 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011394 11 GLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 44 (487)
Q Consensus 11 giIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (487)
-|.| +|.+|+.+++.|++.|++|++.+|++.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 36 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGA 36 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence 4666 799999999999999999999999887643
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 487 | ||||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-136 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-135 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-134 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-134 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-134 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-134 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-120 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-118 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-118 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-118 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 8e-74 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 1e-18 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 3e-06 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 7e-05 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 6e-04 |
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 487 | |||
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-126 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 6e-16 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 7e-16 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 8e-16 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-15 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 1e-15 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 1e-15 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 2e-15 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 3e-15 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 3e-15 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 3e-14 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 6e-14 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 1e-13 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-13 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 3e-13 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 2e-11 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 5e-11 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 3e-06 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 |
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 825 bits (2133), Expect = 0.0
Identities = 238/474 (50%), Positives = 329/474 (69%), Gaps = 8/474 (1%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E + + + L + E F
Sbjct: 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTLEEF 62
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSG 186
++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
++VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT ++
Sbjct: 183 HYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVL 242
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 306
KDD+G+GY+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+ERV+
Sbjct: 243 KRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVK 302
Query: 307 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
A+KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G
Sbjct: 303 ASKVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYG 358
Query: 367 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 426
+A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +
Sbjct: 359 TIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQA 418
Query: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
G P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 419 GTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 824 bits (2131), Expect = 0.0
Identities = 246/472 (52%), Positives = 322/472 (68%), Gaps = 8/472 (1%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + L + + F
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEF 72
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G+
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH 192
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
+VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT DIF
Sbjct: 193 YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT 252
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
KD+ G+ YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++RV A
Sbjct: 253 KKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAA 311
Query: 308 AKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 367
+KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE
Sbjct: 312 SKVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGE 367
Query: 368 LARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSG 427
+A+I++ GCIIRA FL +I A N +ANLL+ P F + D Q A R VV A+ +G
Sbjct: 368 IAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNG 427
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
I P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 428 IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 821 bits (2122), Expect = 0.0
Identities = 230/472 (48%), Positives = 307/472 (65%), Gaps = 7/472 (1%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + K + G E
Sbjct: 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEM 60
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+ ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGH 180
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA I
Sbjct: 181 FVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILK 240
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
+D G +L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++A
Sbjct: 241 FQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA 299
Query: 308 AKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 367
+K K DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G
Sbjct: 300 SKKLKGPQ---NIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGG 356
Query: 368 LARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSG 427
+A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR + + +G
Sbjct: 357 IALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAG 416
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 478
I P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 417 IPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 806 bits (2083), Expect = 0.0
Identities = 233/486 (47%), Positives = 310/486 (63%), Gaps = 14/486 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
GL GLAVMGQNL LN A+ GF + YNRT SKVD + K + G
Sbjct: 4 HHHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK--SIIG 61
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
E F++ +++PR +++LVKAGAPVD I + +EKGD IIDGGN + ++ RR +
Sbjct: 62 ATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE 121
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
+ + G+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I ++A+ D PC +V
Sbjct: 122 ELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKS-DGEPCCEWV 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
G+G++VKM+HNGIEYGDMQLI EAYD++K +G T++E+ +VF +WN G L SFL+E
Sbjct: 181 GPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
IT DI D G LV+K++D G KGTGKWT A DL + I ++ AR LS L
Sbjct: 241 ITRDILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSAL 299
Query: 301 KEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 360
K ER+ A+KV G V + D+++ +DD+ QALYASKI SYAQG LIR + G
Sbjct: 300 KNERIRASKVLP--GPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYG 357
Query: 361 WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 420
W L +A +W+GGCIIR+VFL +I KAY DL NLL + FA + QS WR+ +
Sbjct: 358 WKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSI 417
Query: 421 CLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS------- 473
LA GI TP S++L+++D YR ERLPANL+QAQRDYFGAHT+ + S
Sbjct: 418 ALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK 477
Query: 474 -FHTEW 478
H W
Sbjct: 478 DIHINW 483
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 779 bits (2014), Expect = 0.0
Identities = 169/478 (35%), Positives = 261/478 (54%), Gaps = 10/478 (2%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP-LFGFRDPESFV 68
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ L F E+F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++KPR ++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEITADIFG 247
VKM HN EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K ER
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 308 AKVFK--SGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 365
A + G I + ++ + I YAQ +R + L L
Sbjct: 302 ASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNL 361
Query: 366 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA-I 424
++ GCI++ L + +A+++N +++NL+ F EI +R +V L
Sbjct: 362 PATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALITS 419
Query: 425 NSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 481
+S P +S+SL Y + L LV QRD FG H YER+D +G +W ++
Sbjct: 420 KLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 371 bits (954), Expect = e-126
Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 54/346 (15%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GL MG ++ + + G VY+ + V ++EG + G R E F
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSIEEFC 76
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ KPRV+ ++V A VD ++ ++ + D +IDGGN Y++ RR M G+
Sbjct: 77 AKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT 135
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT---------- 178
Y+ +G SGG G G LM GG +A + ++ + +A + + P
Sbjct: 136 YVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGI-GAAPRTPGREKREGTAE 194
Query: 179 ----YVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE-------------- 220
+ G+G+FVKM+HNGIEYG M AE ++L
Sbjct: 195 LGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPD 254
Query: 221 ------ELQNVFTEWNKGELL-SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKW 273
+L ++ W +G ++ S+L++++A D + + + G G+W
Sbjct: 255 FYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRW 308
Query: 274 TVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKS--GGFG 317
TV A D V A ++S+L RF S +++ A ++ + FG
Sbjct: 309 TVAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLLSAMRYEFG 352
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 6e-16
Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 19/211 (9%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M +G+ GL MG A + G + +
Sbjct: 1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE---------GA 51
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTER 117
S +++LV A V + + ++ M+ G ++ + +
Sbjct: 52 CGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQE 111
Query: 118 REKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176
A+ L L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 112 IAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISD- 170
Query: 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
G+G+ VK+IH + + AEA
Sbjct: 171 -----TPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 41/204 (20%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++G GL +MG+ ++ N+ + G+ + V +R + + + G +
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------AGAETASTA 55
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
++ VII ++ V E + + G +ID + + A+
Sbjct: 56 KAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA 115
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
G+ L VSGGE A G S+M GG + D++ + V +
Sbjct: 116 KGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM-------AGSVVHTGDI 168
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEA 207
G+GN K+ + I ++ ++EA
Sbjct: 169 GAGNVTKLANQVIVALNIAAMSEA 192
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Query: 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR 62
G + +G GL +MG+ +++N+ + GF ++V+NRT SK DE VE + P +
Sbjct: 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIK 76
Query: 63 DPESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERRE 119
+ I ++ + + + +G ID E + +
Sbjct: 77 KCK----------YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKIN 126
Query: 120 KAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+A+ G ++ VSG ++ A G ++ G ++ + G
Sbjct: 127 EAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL-------GKRSF 179
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
Y+ + G+G +K+I N I M +E
Sbjct: 180 YLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 21/204 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
T G GL +MG +A N+ GF ++V+NR +K V ++ P +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACD-- 59
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
+ I ++ A E + + G ID E + A+
Sbjct: 60 --------ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTA 111
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
G +L VSG ++ A G ++ G + + G ++ +
Sbjct: 112 RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL-------GKKCLHLGEV 164
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEA 207
G G +K++ N I M + E
Sbjct: 165 GQGARMKLVVNMIMGQMMTALGEG 188
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 21/203 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I G MG +A + E G+ + V+NRT ++ G E
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA----------LGATIHEQA 81
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ + +++ +++ GA V + + + ++A M+ G +D + + L
Sbjct: 82 RAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL 141
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G+ +L VSGG GA G +M GG ++ +L T+V G
Sbjct: 142 GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR--------ATHVGPHG 193
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
SG K+ + I + +AEA
Sbjct: 194 SGQLTKLANQMIVGITIGAVAEA 216
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 28/209 (13%), Positives = 64/209 (30%), Gaps = 20/209 (9%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
+ + + + GL MG +A + ++G ++++NR+ K V G
Sbjct: 3 LSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA----------G 52
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLS-AYMEKGDCIIDGGNEWYENTERRE 119
ES ++ I ++ E + A I+D + +
Sbjct: 53 AHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQ 112
Query: 120 KAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+ + G Y+ + H + G EA++ +L +
Sbjct: 113 GLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL-------AGHTV 165
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
++ + + + + M EA
Sbjct: 166 FLPWDEALA-FATVLHAHAFAAMVTFFEA 193
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 35/211 (16%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG GL +MG + N+ + G ++V+NRT K D ++ + G P +
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTP----AE---- 82
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENT-------ER 117
+ + V + + + + G C +D +
Sbjct: 83 --VVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-------MSTVDADTVTE 133
Query: 118 REKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176
+ + G +L VSG ++ + G ++ G Y+ + G
Sbjct: 134 LAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM-------GKT 186
Query: 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
++ + G+ + +I N ++ M IAE
Sbjct: 187 SFFLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 19/201 (9%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++G GL MG +A + E ++VY+ + E G +S
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA----------GATLADSV 65
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
+ + I ++ V E + L+ + + G I + + +
Sbjct: 66 ADVAAADLIHITVLDDAQ-VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDI 124
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+ VSGG A G + M G E Y+ I+ AA V + + G+G
Sbjct: 125 HIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV-------VIHAGEPGAG 177
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
+K+ N + + EA
Sbjct: 178 TRMKLARNMLTFTSYAAACEA 198
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 21/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+ G GL +MG +A N+ + G ++++NR+ K +E + P
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCP--- 59
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
V ++ A +E + + +G +D ++R A+
Sbjct: 60 -------VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAK 112
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G +L VSG ++ A G ++ G Y K+ G + ++ G
Sbjct: 113 GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM-------GKKIIHLGDVG 165
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
G +K++ N + G M E
Sbjct: 166 KGAEMKLVVNMVMGGMMACFCEG 188
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP 64
++ +IG GL MG+ +A+N+ ++G + ++ + V V + G +
Sbjct: 2 EKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ----------GAQAC 51
Query: 65 ESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKA 121
E+ +I + V+ + + + + G I+D + +T + K
Sbjct: 52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKV 111
Query: 122 MAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AE G+ Y+ VSGG +GA G ++M G S ++ I+ +L + + +V
Sbjct: 112 AAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDI-------YHV 164
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEA 207
G+G+ VK+++N + +M +AEA
Sbjct: 165 GDTGAGDAVKIVNNLLLGCNMASLAEA 191
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +A+N+A G + V +L G + E+
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIG-----------PVADELLSLGAVNVETAR 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I ++V V++ + + +G I+D + T+R + + E+
Sbjct: 54 QVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G YL VSGGE GAR G S+M GG + + ++ + + G +T V G
Sbjct: 114 GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL-------GKNITLVGGNG 166
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
G K+ + I +++ ++EA
Sbjct: 167 DGQTCKVANQIIVALNIEAVSEA 189
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 21/201 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++ GL MG +A ++A + + V+NRT K E P
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG--------SEAVPLER 52
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V + RVI + V E + L Y+ +G +D + E + R + + E G+
Sbjct: 53 V---AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGV 109
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
YL VSGG GA G ++M GG EA + + L V +V G+G
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL--------AYAKKVVHVGPVGAG 161
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
+ VK I+N + ++ E
Sbjct: 162 HAVKAINNALLAVNLWAAGEG 182
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 21/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+G GL MG +A N+ + G+P+ +Y+ E + G + S
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA----------GEQVVSSPA 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +K II ++ E + ++KG +ID ++ K + ++
Sbjct: 52 DVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM 111
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G +++ VSGG AR G + M GG + + +++L + + V Y G
Sbjct: 112 GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-------VYCGAVG 164
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
+G K+ +N + M AEA
Sbjct: 165 TGQAAKICNNMLLAISMIGTAEA 187
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 34/211 (16%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
++G G +A + + G ++ Y+ +++ RA++ G S
Sbjct: 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEE------LGVSCKAS 76
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT------ERREK 120
+ VI LV A A + E + ++ +G D +
Sbjct: 77 VAEVAGECDVIFSLVTAQAAL-EVAQQAGPHLCEGALYADF------TSCSPAVKRAIGD 129
Query: 121 AMAE--LGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCV 177
++ Y + V + H P ++ G + ++
Sbjct: 130 VISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI------E 180
Query: 178 TYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208
+ G +KM + + G L EA
Sbjct: 181 VLDGEVGGAALLKMCRSAVLKGLEALFLEAL 211
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 5e-11
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 34/226 (15%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKV---DETVERAKKEGDL 56
+ +T I G Q++A + + ++ Y+ + RA + G
Sbjct: 18 LYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVE 77
Query: 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT- 115
PL D + V++ LV A + + ++ ID N+
Sbjct: 78 PL---DDVAGIACA----DVVLSLVVGAATK-AVAASAAPHLSDEAVFIDL------NSV 123
Query: 116 -----ERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 170
A+A ++ V ++ G +VA ++
Sbjct: 124 GPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAV---------EVAERL 174
Query: 171 PDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215
G + V G + +KMI + + G L+ EA + G
Sbjct: 175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG 220
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 24/207 (11%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
R+G G + Q LA + +G + S T+ERA+ E+
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS--PSTIERAR--------TVGVTETSE 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ V+I V G + A +D N E + + G
Sbjct: 52 EDVYSCPVVISAVTPGVALGA---ARRAGRHVRGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++ + G ++ G + + G +
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAE---------EFMKLNRYGLNIEVRGREPGDASA 157
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVG 215
+KM+ + G L+ E +G
Sbjct: 158 IKMLRSSYTKGVSALLWETLTAAHRLG 184
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-06
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 22/215 (10%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLF 59
M + T I L G + NLA + KGF I VY+RT E ++ +
Sbjct: 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK------VEAE 57
Query: 60 GFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE 119
D ++ I+ +K A E ++ + + ++ E
Sbjct: 58 YTTDLAEVN---PYAKLYIVSLKDSA-FAELLQGIVEGKREEALMVHTAGSIP--MNVWE 111
Query: 120 KAMAELGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+ G+ Y S E P + S E +++ I ++ +V
Sbjct: 112 GHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRV-------- 163
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213
Y + + + + A A ++LK
Sbjct: 164 YDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKK 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 47/385 (12%), Positives = 106/385 (27%), Gaps = 126/385 (32%)
Query: 157 KYIEDILLKVAA--------QVPDSGPCVTYV-----SKGGSG--NFVKMIHN------- 194
K ++D+ + + D+ + SK FV+ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 195 ---GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN--KGELLSFLIEITADIFGIK 249
E ++ Y ++ +L N+ VF ++N + + L + +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYLKLRQ------ALL 145
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
+ + ++ +D G+ G+GK V A D+ +V+
Sbjct: 146 ELRPAKNVL---ID--GVLGSGKTWV--ALDV------------------CLSYKVQ--C 178
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGM------------------NL 351
F + + + + ++ Q L ++ L
Sbjct: 179 KMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 352 IRAKSIEKG-------WDLKLGELARIWK---GGCII------RAV--FLDRIKKAYDRN 393
+++K E + A+ W C I + V FL +
Sbjct: 238 LKSKPYENCLLVLLNVQN------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 394 ADLANLLVDPE----FAKEIVDRQSAWRRVVC----LAINS-GISTPGMSSSLAYFDSYR 444
+ L E K + R R V ++ S ++ +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 445 RERLPANLVQA---------QRDYF 460
++L ++++ R F
Sbjct: 352 CDKL-TTIIESSLNVLEPAEYRKMF 375
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 487 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.98 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.96 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.95 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.94 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.94 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.93 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.93 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.92 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.91 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.91 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.9 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.85 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.85 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.84 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.84 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.84 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.83 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.83 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.82 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.81 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.81 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.81 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.78 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.78 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.73 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.73 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.73 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.73 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.73 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.73 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.72 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.72 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.7 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.69 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.48 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.66 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.65 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.64 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.64 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.63 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.63 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.63 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.61 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.61 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.6 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.52 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.49 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.48 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.47 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.46 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.4 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.4 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.3 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.29 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.29 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.28 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.26 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.26 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.26 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.24 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.22 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.2 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.19 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.19 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.19 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.18 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.18 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.17 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.16 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.16 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.15 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.15 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.14 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.14 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.14 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.14 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.14 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.14 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.13 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.12 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.1 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.07 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.07 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.06 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.03 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.03 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.99 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.97 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.96 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.95 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.94 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.9 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.88 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.84 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.78 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.77 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.72 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.72 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.72 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.69 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.67 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.65 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.65 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.65 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.65 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.62 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.62 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.61 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.6 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.6 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.58 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.58 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.58 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.57 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.56 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.55 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.55 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.54 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.5 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.5 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.5 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.5 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.49 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.48 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.47 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.47 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.47 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.46 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.45 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.44 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.44 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.43 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.42 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.42 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.41 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.4 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.4 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.4 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.39 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.38 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.38 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.37 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.36 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.36 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.35 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.34 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.34 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.34 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.32 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.32 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.31 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.29 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.29 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.27 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.26 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.26 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.24 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.23 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.23 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.22 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.2 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.19 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.19 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.19 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.18 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.18 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.16 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.15 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.14 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.14 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.13 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.13 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.12 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.11 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.11 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.1 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.1 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.1 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.1 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.1 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.09 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.08 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.07 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.05 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.05 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.04 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.04 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.03 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.03 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.02 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.01 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.01 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.01 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.01 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.0 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.0 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.99 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.99 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.94 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.94 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.94 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.93 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.93 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.93 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.92 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.91 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.91 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.9 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.89 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.89 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.87 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.87 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.85 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.84 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.84 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.82 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.82 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.81 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.81 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.79 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.79 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.79 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.78 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.78 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.76 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.76 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.75 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.71 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.7 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.69 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.68 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.67 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.65 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.61 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.6 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.59 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.58 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.58 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.57 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.56 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.55 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.54 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.54 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.53 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.51 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.48 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.46 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.45 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.44 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.41 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.41 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.37 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.34 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.32 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.32 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.31 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.3 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.28 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.28 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.27 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.26 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.22 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.21 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.2 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.18 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.14 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.1 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.1 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.1 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.1 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.08 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.04 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.04 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.99 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.99 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.97 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.94 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.94 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.94 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.94 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.94 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.93 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.92 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.91 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.88 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.83 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.81 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.8 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.8 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.78 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.78 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.76 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.76 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.75 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.7 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.69 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.69 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.64 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.62 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.59 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.58 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.58 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.56 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.54 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.54 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.5 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.49 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.42 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.41 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.36 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.34 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.33 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.32 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.25 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.25 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.22 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.18 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.17 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.15 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.14 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.14 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.13 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.12 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.11 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.02 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.02 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.98 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.97 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.95 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.94 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.83 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.8 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.77 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.77 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.76 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.74 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.66 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.65 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.65 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.64 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.62 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.61 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.56 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.55 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.53 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.5 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.5 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.5 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.47 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 95.46 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.44 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.43 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.4 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.37 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.3 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.28 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.27 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.26 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.26 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.22 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.21 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.21 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 95.19 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.19 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.18 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.17 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.17 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.14 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.14 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.12 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.1 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.1 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.09 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.09 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.08 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.03 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.02 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.02 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.02 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.0 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 94.97 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.97 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 94.96 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 94.95 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.93 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.92 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.91 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.9 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 94.9 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.87 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 94.86 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.85 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 94.84 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.81 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.81 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.81 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.79 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.78 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.78 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 94.74 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.74 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.73 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.72 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.72 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 94.71 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.7 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.7 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.69 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.69 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 94.68 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.66 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 94.63 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.62 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.62 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 94.61 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.58 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.57 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.56 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.56 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.56 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 94.54 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.54 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 94.52 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 94.51 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.51 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.51 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 94.51 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.5 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 94.5 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 94.49 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.48 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.48 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.47 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 94.45 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.44 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 94.41 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.4 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.37 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 94.37 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.36 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.35 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.33 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 94.32 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 94.32 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.32 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 94.31 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.3 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.28 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.27 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.27 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.24 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.23 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.22 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.2 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.2 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.15 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.15 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-112 Score=889.66 Aligned_cols=474 Identities=48% Similarity=0.828 Sum_probs=439.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.||+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.. +.++..+.+++|+++.++.+|+||+|||++.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~ 80 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK--GTKVVGAQSLKEMVSKLKKPRRIILLVKAGQ 80 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT--TSSCEECSSHHHHHHTBCSSCEEEECSCSSH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccC--CCceeccCCHHHHHhhccCCCEEEEecCChH
Confidence 46799999999999999999999999999999999999998876422 1134557899999987777999999999988
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (487)
+++.+++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.++++|+++|+||++++++.++|+|+.
T Consensus 81 ~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~ 160 (484)
T 4gwg_A 81 AVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQG 160 (484)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
++.++.+++||+.|+|+.|+||++||+||+++++++++++|++.++++ .| +|++++.++|+.|+.|.++||+++++.+
T Consensus 161 ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~~ 239 (484)
T 4gwg_A 161 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITAN 239 (484)
T ss_dssp HSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred hcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 999865788999999999999999999999999999999999999999 88 9999999999999999999999999999
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCcc
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAV 324 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (487)
++..+| +.+++++|.|+|.++|||||+|++++|.++|+|+|+|++||++|++|++|++|..+++.+++|.+. ....
T Consensus 240 ~l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~---~~~~ 315 (484)
T 4gwg_A 240 ILKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF---QFDG 315 (484)
T ss_dssp HHHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C---CCCS
T ss_pred HHhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc---cccc
Confidence 998765 456789999999999999999999999999999999999999999999999999999999877421 1245
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
+..+|+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|++||+++|||+||.
T Consensus 316 ~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~~~ 395 (484)
T 4gwg_A 316 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDF 395 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcCHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCc-cccccccCCc
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS-FHTEWFKIAK 483 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~-~h~~w~~~~~ 483 (487)
|.+.+++.+++||+||..|++.|+|+|++|+||+||++||++++|+|||||||||||+|||+|+|++|. ||++|++++.
T Consensus 396 f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~~~ 475 (484)
T 4gwg_A 396 FKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 475 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 8999997555
Q ss_pred CCC
Q 011394 484 QSK 486 (487)
Q Consensus 484 ~~~ 486 (487)
+++
T Consensus 476 ~~~ 478 (484)
T 4gwg_A 476 TVS 478 (484)
T ss_dssp ---
T ss_pred Ccc
Confidence 443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-103 Score=828.21 Aligned_cols=471 Identities=49% Similarity=0.859 Sum_probs=434.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|||||+|.||.+||++|+++||+|++|||++++++++.+ ..... ++..+.+++++++.++++|+||+|||++.
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~ 86 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK---SIIGATSIEDFISKLKRPRKVMLLVKAGA 86 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTS---SEECCSSHHHHHHTSCSSCEEEECCCSSH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCC---CeEEeCCHHHHHhcCCCCCEEEEEcCChH
Confidence 358999999999999999999999999999999999998876 31101 36778899999987777999999999988
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (487)
+++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+|++.++..|+++|+||++++++.++++|+.
T Consensus 87 ~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~~ 166 (497)
T 2p4q_A 87 PVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQS 166 (497)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
++.+. +++||+.++|+.|+|+++||++|++.++++++++|++.++++ .| ++++++.+++..|+.+.+.|++++++.+
T Consensus 167 ~g~~~-dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~~ 244 (497)
T 2p4q_A 167 ISAKS-DGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITRD 244 (497)
T ss_dssp HSCEE-TTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred hcCcc-CCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 99864 567899999999999999999999999999999999999999 58 9999999999999999999999999988
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCcc
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAV 324 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (487)
++..++ |++.+.++.++|.++|||||+|+++.|.++|+|+|++.++|++|++|..+++|..+++.+.+|..+ .....
T Consensus 245 ~l~~~d-~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~--~~~~~ 321 (497)
T 2p4q_A 245 ILKFDD-VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVP--KDAVK 321 (497)
T ss_dssp HHTCBC-TTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC--TTSCS
T ss_pred HHhcCC-CCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCcc--ccccc
Confidence 877654 566699999999999999999999999999999999999999999999999999999999887520 01234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+||.
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~ 401 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKF 401 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccc--------cCCCcccc
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERI--------DMEGSFHT 476 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~--------d~~~~~h~ 476 (487)
|.+.+++..++|||||..|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+ |++|.||+
T Consensus 402 f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~~~h~ 481 (497)
T 2p4q_A 402 FADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHI 481 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCCeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCCcCC
Q 011394 477 EWFKIAKQS 485 (487)
Q Consensus 477 ~w~~~~~~~ 485 (487)
+|++++.++
T Consensus 482 ~w~~~~~~~ 490 (497)
T 2p4q_A 482 NWTGHGGNV 490 (497)
T ss_dssp CCC------
T ss_pred ccCCCCCcc
Confidence 997655544
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-102 Score=821.57 Aligned_cols=465 Identities=52% Similarity=0.894 Sum_probs=434.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.+
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 46899999999999999999999999999999999999887652101 266788999999877779999999999878
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+.++..|+++|+||+++.++.++++|+.+
T Consensus 92 v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 171 (480)
T 2zyd_A 92 TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKI 171 (480)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999889888888899999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+.+..+++||+.++|+.|+|+++||++|++.++++++++|++.++++ .| ++++++.+++..|+.|.++|++++++.++
T Consensus 172 g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 250 (480)
T 2zyd_A 172 AAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITKDI 250 (480)
T ss_dssp SCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHHHH
T ss_pred hccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 98644688999999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
++.++ +.+++.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|..+++|..+++.+++|.+ ....+
T Consensus 251 l~~~d-~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~----~~~~~ 325 (480)
T 2zyd_A 251 FTKKD-EDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA----QPAGD 325 (480)
T ss_dssp HHCBC-TTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC----CCCCC
T ss_pred HhcCC-CCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC----CCCCC
Confidence 87654 56679999999999999999999999999999999999999999999999999999999988752 12348
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
+++|+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+||.|
T Consensus 326 ~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~f 405 (480)
T 2zyd_A 326 KAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYF 405 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCcccccccc
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~ 480 (487)
.+.+++..++|||||..|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 406 ~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 406 KQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-101 Score=808.54 Aligned_cols=466 Identities=50% Similarity=0.889 Sum_probs=432.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++|||||+|.||.+||.+|+++|++|.+|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.+
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~~~ 81 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAGAA 81 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTTHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCchH
Confidence 36899999999999999999999999999999999999887653111 256788999998876679999999999888
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.+++++.+.+.+|++|||++|+.+.++.++.+.+.++|++|+++|++|++..+..|+++|+||+++.++.++++|+.+
T Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 161 (474)
T 2iz1_A 82 TDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 161 (474)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888877899999999999999999999888999999999999999999
Q ss_pred hccCC-CCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 167 AAQVP-DSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 167 g~~~~-~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
+.++. +++||+.++|+.|+|+++||++|++.++++++++|++.++++ .| ++++++.+++..|+.+.+.||+++++.+
T Consensus 162 g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~~~ 240 (474)
T 2iz1_A 162 AAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEITKE 240 (474)
T ss_dssp SCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred hcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence 98632 578999999999999999999999999999999999999999 68 9999999999999999999999999998
Q ss_pred ccccccCCCCc-hhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCc
Q 011394 245 IFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQA 323 (487)
Q Consensus 245 ~l~~~~~~~~~-~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (487)
++..++ +.++ +.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|..|++|..+++.+++|.+ ...
T Consensus 241 ~l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~----~~~ 315 (474)
T 2iz1_A 241 VLKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL----DFS 315 (474)
T ss_dssp HTTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC----CCC
T ss_pred HhhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC----cCC
Confidence 876554 5455 8999999999999999999999999999999999999999999999999999999988752 123
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+||
T Consensus 316 ~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~ 395 (474)
T 2iz1_A 316 GDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDD 395 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGGSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhcCH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccccC
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 481 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~~ 481 (487)
.|.+.+++..++|||||..|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|+++
T Consensus 396 ~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~~ 473 (474)
T 2iz1_A 396 YFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYTE 473 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-99 Score=802.13 Aligned_cols=471 Identities=49% Similarity=0.831 Sum_probs=433.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+ ... +.++..+.+++++++.++.+|+||+|||++.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK---GTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT---TSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcccc---CCCeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 68999999999999999999999999999999999998876 210 01366788999998755569999999999878
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.+++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.++..|+++++||+++.++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888899999999999999999999889999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~-g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+.++.+++||+.++|+.|.|+++||++|++.++++++++|++.++++. | ++++++.+++..|+.+.+.|++.+++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 987545689999999999999999999999999999999999999999 8 99999999999999998999999998887
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
+..++ +++++.++.+++.++||+||+|+++.|.++|+|+|++.+++++|+.+..|++|..+++.+++|... ....+
T Consensus 239 l~~~d-~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~---~~~~~ 314 (482)
T 2pgd_A 239 LKFQD-ADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI---PFEGD 314 (482)
T ss_dssp HHCBC-TTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCSC
T ss_pred hhccC-CCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc---ccCcC
Confidence 77654 677789999999999999999999999999999999988899999999999999999999887521 12347
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
.+||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+||++|+.|
T Consensus 315 ~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~~ 394 (482)
T 2pgd_A 315 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFF 394 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcCHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCC-ccccccccCCcC
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQ 484 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~-~~h~~w~~~~~~ 484 (487)
.+.+++.+++|||||..|++.|+|+|++++||+||++|+++++|+|||||||||||+|||+|+|++| .||++|++++.+
T Consensus 395 ~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~~~~ 474 (482)
T 2pgd_A 395 KSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 474 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999765554
Q ss_pred CC
Q 011394 485 SK 486 (487)
Q Consensus 485 ~~ 486 (487)
++
T Consensus 475 ~~ 476 (482)
T 2pgd_A 475 VS 476 (482)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-97 Score=780.26 Aligned_cols=467 Identities=36% Similarity=0.627 Sum_probs=428.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ...++..+.+++++++.++++|+||+|||++.+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 5899999999999999999999999999999999999888752100 000256778999998866679999999999878
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.+++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++..+..|+++++||+++.++.++++|+.+
T Consensus 82 v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 161 (478)
T 1pgj_A 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (478)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888899999999999999999999888999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhc-cCcchhhhHhhhccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN-KGELLSFLIEITADI 245 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~-~~~~~s~~~~~~~~~ 245 (487)
+.+..+++||+.++|+.|+|+++|+++|++.++.+++++|++.++++.| ++++++.+++..|+ .|.+.|++.+++.++
T Consensus 162 g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~ 240 (478)
T 1pgj_A 162 AAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAA 240 (478)
T ss_dssp SCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHH
T ss_pred cccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhhchh
Confidence 9875467899999999999999999999999999999999999999888 99999999999999 888899999999887
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCc-c
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQA-V 324 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~-~ 324 (487)
+..++ +.+.+.++.+.|.++|||||+|+++.|.++|+|+|++.++|++|++|..+++|..+++.+++|..+ .... .
T Consensus 241 l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~--~~~~~~ 317 (478)
T 1pgj_A 241 ARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQS--PGYTLK 317 (478)
T ss_dssp HHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCC--CCCCCS
T ss_pred hhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCcc--cccccc
Confidence 76554 433489999999999999999999999999999999999999999999999999999999877420 0112 3
Q ss_pred ch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcC
Q 011394 325 DK---QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLV 401 (487)
Q Consensus 325 ~~---~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~ 401 (487)
+. ..|+++|++|+|++++++|+|||++|++++++|+|++|+.+|++|||+||||||.||+.|.++|+++|++.|||
T Consensus 318 ~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~~~~~l~- 396 (478)
T 1pgj_A 318 NKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLM- 396 (478)
T ss_dssp CCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTT-
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCCChhhHH-
Confidence 44 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhhhhhHHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCCch-hhHHHHHhhccCCcccccccCCCccccccc
Q 011394 402 DPEFAKEIVDRQSAWRRVVCL-AINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~v~~-a~~~g~p~p~~~aal~~~~~~~~~~~~-~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~ 479 (487)
+.|.+.+++.+++||+||.. |++.|+|+|++|+||+|||+||+++|| +|||||||||||+|||+|+|++|.||++|+
T Consensus 397 -~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~~~h~~w~ 475 (478)
T 1pgj_A 397 -CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWP 475 (478)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCCceecCCC
Confidence 99999999999999999999 999999999999999999999999999 999999999999999999999999999998
Q ss_pred c
Q 011394 480 K 480 (487)
Q Consensus 480 ~ 480 (487)
+
T Consensus 476 ~ 476 (478)
T 1pgj_A 476 E 476 (478)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-52 Score=422.68 Aligned_cols=321 Identities=29% Similarity=0.469 Sum_probs=262.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++..+.+|+||+|||++ +
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~ 93 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-V 93 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-G
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-H
Confidence 37999999999999999999999999999999999998887643 567889999998833349999999998 8
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++++|+.+
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~l 173 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTL 173 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCC-------------CCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc
Q 011394 167 AAQVPDS-------------GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGE 233 (487)
Q Consensus 167 g~~~~~~-------------~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~ 233 (487)
+.+.... +++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~------------- 239 (358)
T 4e21_A 174 APGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE------------- 239 (358)
T ss_dssp SCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC---------------
T ss_pred ccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc-------------
Confidence 9531000 146899999999999999999999999999999999999876 2211
Q ss_pred chhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcC
Q 011394 234 LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKS 313 (487)
Q Consensus 234 ~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~ 313 (487)
... . ++ +. .
T Consensus 240 --------------~~~-------~-----~~-----------------------~~----------------------~ 248 (358)
T 4e21_A 240 --------------GQG-------A-----DA-----------------------ET----------------------A 248 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccc-------c-----cc-----------------------cc----------------------c
Confidence 000 0 00 00 0
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhC
Q 011394 314 GGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRN 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~ 393 (487)
|- +.+++|+|++|+.+|+++||+||+|+|+||+.+.++|.++
T Consensus 249 ~~--------------------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~ 290 (358)
T 4e21_A 249 PL--------------------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS 290 (358)
T ss_dssp -----------------------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHC
T ss_pred cc--------------------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhC
Confidence 10 0157799999999999999999999999999999999998
Q ss_pred CCCCCCcCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCchh-hHHHHHhhccCCcccc
Q 011394 394 ADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDSYRRERLPA-NLVQAQRDYFGAHTYE 466 (487)
Q Consensus 394 ~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~~~~~~~~~~-~~i~a~rd~fG~H~~~ 466 (487)
|.++++. ..+. ++++ +||+|..|.+.|+|+|++++||+ ||.+ +.+++++ |++||||||||+|+++
T Consensus 291 p~~~~~~--~~~~---d~g~--~r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 291 PDLQEFQ--GRVS---DSGE--GRWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp TTCTTC----CCC---CCSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred CChHHHH--HHHH---hcCc--HHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 8765432 2222 2334 49999999999999999999996 6666 7888884 7999999999999985
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=381.90 Aligned_cols=266 Identities=21% Similarity=0.284 Sum_probs=240.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.|+||||||+|.||.+||++|+++||+|++|||++++++.+.+.+ .+.++|++|+++. +|+||+|||++.
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~ 71 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQ 71 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchH
Confidence 467999999999999999999999999999999999999998765 4688999999998 999999999999
Q ss_pred hHHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHH
Q 011394 86 PVDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIED 161 (487)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ 161 (487)
++++|+. ++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+|+|||||+.+|+.|+ ++|+||+++++++++|
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 151 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARP 151 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 9999985 47788999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhh
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~ 241 (487)
+|+.++.+ ++|+|+.|+|+.+|+++|.+.++++++++|++.++++.| +|++.+.+++ +.+...||.++.
T Consensus 152 ~l~~~g~~-------i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~ 220 (300)
T 3obb_A 152 LFEAMGRN-------IFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEV 220 (300)
T ss_dssp HHHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHH
T ss_pred HHHHhCCC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHh
Confidence 99999976 699999999999999999999999999999999999999 9999999987 567778888887
Q ss_pred hccccc------cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 242 TADIFG------IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 242 ~~~~l~------~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
..+... ..++|.++|.++.+.||++ +++++|++.|+|+|+...+ .++|.++
T Consensus 221 ~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~a-~~~~~~a 277 (300)
T 3obb_A 221 YNPWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 277 (300)
T ss_dssp CCCSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred hccccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 765321 1246889999999999986 8999999999999998765 5666443
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-46 Score=367.19 Aligned_cols=263 Identities=17% Similarity=0.256 Sum_probs=232.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.||||||+|+||.+||++|+++||+|++|||++++++++.+.+ .+.++|+.|+++. +|+||+|||++.++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~~~~~ 75 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLADDAAV 75 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSSHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccchhhH
Confidence 4899999999999999999999999999999999998877654 5678999999887 99999999999888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHH
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ 165 (487)
++++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+|+||+|++.++..|+ ++|+||+++++++++|+|+.
T Consensus 76 ~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~ 155 (297)
T 4gbj_A 76 EELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVEN 155 (297)
T ss_dssp HHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHH
Confidence 8776 568888999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 166 VAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
++.+ ++|+|+ +|+|+.+|+++|.+.++++++++|++.++++.| +|++++.+++ +.+.+.||+++.+.+
T Consensus 156 ~g~~-------i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 224 (297)
T 4gbj_A 156 FVKG-------VFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQNYGK 224 (297)
T ss_dssp TCSE-------EEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHHHHH
T ss_pred hhCC-------eEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhccCc
Confidence 9976 588985 899999999999999999999999999999999 9999999987 677788999999888
Q ss_pred ccccccCCCC-chhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 245 IFGIKDDKGD-GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 245 ~l~~~~~~~~-~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.+..+ +|.| +|.++.+.||++ ++++.|+++|+|+|+...+ .++|..+
T Consensus 225 ~~~~~-~~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~~-~~~~~~a 272 (297)
T 4gbj_A 225 LVASN-TYEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFADII-RNRFISG 272 (297)
T ss_dssp HHHHT-CCCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred cccCC-CCCCccchhHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHHHHH
Confidence 77664 4665 799999999986 8999999999999987754 6666544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.88 Aligned_cols=266 Identities=19% Similarity=0.297 Sum_probs=239.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
...||||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ +..+++++++++. +|+||+|||+
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~ 87 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSD 87 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCC
Confidence 34678999999999999999999999999999999999999887643 5678899999988 9999999999
Q ss_pred ChhHHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHH
Q 011394 84 GAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v 159 (487)
+.+++.++ +++.+.+.+|++|||+||+.|..++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++
T Consensus 88 ~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 167 (310)
T 3doj_A 88 PCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEES 167 (310)
T ss_dssp HHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHH
Confidence 88899998 788888999999999999999999999998989999999999999999999999 89999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~ 239 (487)
+++|+.++.+ ++++|+.|.|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++. .+...|+++
T Consensus 168 ~~ll~~~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~ 236 (310)
T 3doj_A 168 IPAFDVLGKR-------SFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDILD---LGAMTNPMF 236 (310)
T ss_dssp HHHHHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHH---HSTTCCHHH
T ss_pred HHHHHHhCCC-------EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHH
Confidence 9999999976 589999999999999999999999999999999999999 99999999984 466778888
Q ss_pred hhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
+...+.+..+ +|.++|.++.+.||++ .+++.|+++|+|+|++.++ .+.+..
T Consensus 237 ~~~~~~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 287 (310)
T 3doj_A 237 KGKGPSMNKS-SYPPAFPLKHQQKDMR------LALALGDENAVSMPVAAAA-NEAFKK 287 (310)
T ss_dssp HHHHHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HHHhhhhhcC-CCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 8777666554 5788999999999986 8999999999999998764 555543
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.56 Aligned_cols=263 Identities=19% Similarity=0.265 Sum_probs=238.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|||||||+|.||.+||.+|+++|++|++|||++++++++.+.+ +..+++++++++. +|+||+|||++.
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~ 99 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGA 99 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHH
Confidence 467999999999999999999999999999999999998887653 5678899999887 999999999888
Q ss_pred hHHHHHH--HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 86 PVDETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 86 ~v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
+++.++. ++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++.++..|+ .+++||+++++++++++
T Consensus 100 ~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 179 (320)
T 4dll_A 100 VVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPL 179 (320)
T ss_dssp HHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHH
Confidence 8999887 78888999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+ .+ ++++|+.|+|+++|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||+++..
T Consensus 180 l~~~-~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~ 247 (320)
T 4dll_A 180 LKVF-GR-------ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLH 247 (320)
T ss_dssp HHHH-EE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTH
T ss_pred HHhc-CC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHh
Confidence 9999 65 589999999999999999999999999999999999999 9999999987 5667789999887
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
.+.+..+ +|.++|.++.+.||+. ++++.|+++|+|+|++.++ .+.+..
T Consensus 248 ~~~~l~~-~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 295 (320)
T 4dll_A 248 GQRMVER-DFAPRARLSIQLKDMR------NALATAQEIGFDAPITGLF-EQLYAE 295 (320)
T ss_dssp HHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhhhccC-CCCCcccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 7766654 5788999999999986 8999999999999998764 555543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=311.03 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=236.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ +..+++++++++. +|+||+|||++.+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~ 70 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAA 70 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHH
Confidence 57999999999999999999999999999999999999887754 4678899999988 9999999999878
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++ +++.+.+.++++|||+||+.|..++++.+.+.++|++|+++|++|++..+..|+ ++++||+++.+++++++
T Consensus 71 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 150 (287)
T 3pdu_A 71 AREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPA 150 (287)
T ss_dssp HHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 99998 788888999999999999999999999888888999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.++.+ ++++|+.|.|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++. .+...|++++..
T Consensus 151 l~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~s~~~~~~ 219 (287)
T 3pdu_A 151 FAALGKK-------CLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVLD---AGAMANPMFKGK 219 (287)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhCCC-------EEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hccccChHHHhh
Confidence 9999976 589999999999999999999999999999999999999 99999999984 456778888877
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHh
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFL 297 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~ 297 (487)
.+.+..+ +|.++|.++...||++ ++++.|+++|+|+|++.++ .+.+.
T Consensus 220 ~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~ 266 (287)
T 3pdu_A 220 GQMLLSG-EFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAATA-NESFK 266 (287)
T ss_dssp HHHHHHT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred ccccccC-CCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 7666554 4788899999999975 8999999999999998764 45543
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=308.69 Aligned_cols=261 Identities=18% Similarity=0.268 Sum_probs=236.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|.||.++|.+|+++||+|++|||++++.+.+.+.+ +..+++++++++. +|+||+|||++.++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999998887653 5678899999988 99999999987789
Q ss_pred HHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 88 DETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
+.++ +++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 888899999999999999999999999998989999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011394 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~ 243 (487)
+.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++. .+.+.|++++...
T Consensus 152 ~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~~ 220 (287)
T 3pef_A 152 EKMGKK-------IIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVIG---AGAMANPMFALKG 220 (287)
T ss_dssp HHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHhCCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHHh
Confidence 999976 589999999999999999999999999999999999999 99999999984 4567788888877
Q ss_pred cccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHh
Q 011394 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFL 297 (487)
Q Consensus 244 ~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~ 297 (487)
+.+..+ +|.++|.++...||+. ++++.|+++|+|+|++.++ .+.+.
T Consensus 221 ~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~ 266 (287)
T 3pef_A 221 GLIRDR-NFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASAAA-NELFK 266 (287)
T ss_dssp HHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 766654 5788999999999975 8999999999999998764 55553
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=310.71 Aligned_cols=260 Identities=18% Similarity=0.181 Sum_probs=230.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ ++.+++++++++ +|+||+|||++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChHH
Confidence 35899999999999999999999999999999999998887653 567889998876 8999999998888
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ 165 (487)
++.+++++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++.+++++++|+.
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKH 163 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888899999999999999999999 89999999999999999999
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------HHHHHhhccCcchhhhH
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL------QNVFTEWNKGELLSFLI 239 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i------~~v~~~~~~~~~~s~~~ 239 (487)
++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| +|++++ .+++ +.+.+.||+.
T Consensus 164 ~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i---~~~~~~s~~~ 232 (296)
T 3qha_A 164 WAAV-------VIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDAL---TGGPGAIMVR 232 (296)
T ss_dssp HEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH---HCCGGGGCCC
T ss_pred HcCC-------eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHH---hcCcccCHHh
Confidence 9976 589999999999999999999999999999999999999 999999 5555 4566777766
Q ss_pred hhhccccccccCCCCchhH-----HhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 240 EITADIFGIKDDKGDGYLV-----DKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~l-----~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
+ . +.+.. + |.++|.+ +.+.||++ .+++.|.++|+|+|++..+ .+.|..+
T Consensus 233 ~-~-~~~~~-~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 286 (296)
T 3qha_A 233 D-N-MKDLE-P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLARLA-YEGLAAG 286 (296)
T ss_dssp S-S-CSCCC-T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred h-c-hhhhh-c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 5 3 33333 2 7788988 99999986 8899999999999998865 5666444
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=309.90 Aligned_cols=265 Identities=21% Similarity=0.268 Sum_probs=235.0
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.++|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ... +.+++|+++. +|+||+|||+
T Consensus 5 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp~ 74 (303)
T 3g0o_A 5 GTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVVN 74 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECCC
Confidence 3457999999999999999999999999999999999999888754 334 7788888876 9999999999
Q ss_pred ChhHHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHH
Q 011394 84 GAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v 159 (487)
+..++.++ +++.+.+.++++|||+||+.|..++++.+.+.++|++|+++|++|++..+..|+ .+++||+++.++++
T Consensus 75 ~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 154 (303)
T 3g0o_A 75 AAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRL 154 (303)
T ss_dssp HHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHH
T ss_pred HHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHH
Confidence 87888888 778888999999999999999999999888888999999999999999999999 89999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFL 238 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~ 238 (487)
+++|+.++.+ ++++|+ .|.|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+...|++
T Consensus 155 ~~ll~~~g~~-------~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~ 223 (303)
T 3g0o_A 155 KPVLDAVASN-------VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSWM 223 (303)
T ss_dssp HHHHHHHEEE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHH
T ss_pred HHHHHHHCCC-------EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCHH
Confidence 9999999976 589998 899999999999999999999999999999999 9999999997 456777888
Q ss_pred HhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 239 IEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
++...+.+..+ +|.++|.++.+.||+. ++++.|+++|+|+|++.++ .+.+..
T Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 275 (303)
T 3g0o_A 224 FENRMQHVVDG-DYTPRSAVDIFVKDLG------LVADTAKALRFPLPLASTA-LNMFTS 275 (303)
T ss_dssp HHHHHHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HHhhhHHHhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 88776655543 5788899999999986 8999999999999998764 555533
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=294.32 Aligned_cols=263 Identities=13% Similarity=0.133 Sum_probs=225.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|||||||+|.||.+||++|+++||+|++|||++++++++.+.+ +..+.+++++++. +|+||+|||++
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~ 76 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDN 76 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCH
Confidence 3467999999999999999999999999999999999999888754 4567899999988 99999999998
Q ss_pred hhHHHHHH--HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHH
Q 011394 85 APVDETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIED 161 (487)
Q Consensus 85 ~~v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ 161 (487)
.+++.++. .+.+ +.+|++|||+||+.|..++++.+.+.++|++|+++||+|++..+..+. ++++||++++++++++
T Consensus 77 ~~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ 155 (306)
T 3l6d_A 77 HATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRA 155 (306)
T ss_dssp HHHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHH
Confidence 77898886 5544 569999999999999999999999999999999999999987776666 8999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEe--CC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh
Q 011394 162 ILLKVAAQVPDSGPCVTYV--SK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFL 238 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~--G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~ 238 (487)
+|+.++.+ ++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++..+.. .+.|++
T Consensus 156 ll~~lg~~-------~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~~~~~-~~~s~~ 222 (306)
T 3l6d_A 156 LLEGLAGH-------TVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLETSR-FFVADA 222 (306)
T ss_dssp HHHTTCSE-------EEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHhcCC-------EEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhh-hcccHH
Confidence 99999765 5899 97 79999999 566788999999999999999 999999999854310 146888
Q ss_pred HhhhccccccccCCCCc-hhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 239 IEITADIFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 239 ~~~~~~~l~~~~~~~~~-~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
++...+.+..+ +|.++ |.++...||++ ++++.|.+.|+|+|++.++ .+.+..+
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 276 (306)
T 3l6d_A 223 LEEAVRRLETQ-DFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVFDAV-CQVVQRA 276 (306)
T ss_dssp HHHHHHHHHHT-CCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcC-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHHHHH-HHHHHHH
Confidence 88777666554 47764 68999999986 8999999999999998764 5666443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=279.84 Aligned_cols=255 Identities=13% Similarity=0.106 Sum_probs=209.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.||||||||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.+ +..+++++++++. +|+||+|||
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp 92 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGE---CDVIFSLVT 92 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHH---CSEEEECSC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhc---CCEEEEecC
Confidence 46799999999999999999999999 99999997 57777666543 5678899999888 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYI 159 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v 159 (487)
++. ...+++++.+.+.++++|||+||+.|.+++++.+.+.++ |++|+++|++|++..+ .|. ++++||+.+ +++
T Consensus 93 ~~~-~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~ 168 (312)
T 3qsg_A 93 AQA-ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRF 168 (312)
T ss_dssp TTT-HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHH
T ss_pred chh-HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHH
Confidence 985 445778999999999999999999999999999888888 9999999999976554 566 889999877 899
Q ss_pred HHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFL 238 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~ 238 (487)
+++|+.+|.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +|+ ++.+.+. .+. .++.
T Consensus 169 ~~ll~~~g~~-------~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~---~~~-~~~~ 235 (312)
T 3qsg_A 169 QAAFTLYGCR-------IEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLD---ASF-PEHH 235 (312)
T ss_dssp HHHHHTTTCE-------EEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHH---HHS-GGGT
T ss_pred HHHHHHhCCC-------eEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHH---hcC-Cchh
Confidence 9999999976 589998 899999999999999999999999999999999 998 5667764 322 2444
Q ss_pred HhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 239 IEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
++...+.+..+ +|.++|.+ .||++ .+++.|+++|+++|++.++ .+.+..
T Consensus 236 ~~~~~~~~~~~-~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~ 284 (312)
T 3qsg_A 236 LRDLALYLVER-NLEHADRR---AHELG------EVAATLCSVGVEPLVAEAG-YRRLTR 284 (312)
T ss_dssp HHHHHHHHHHH-HHHHHHHH---HHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HHHhhhHhhcC-CCCcccch---HHHHH------HHHHHHHHcCCCcHHHHHH-HHHHHH
Confidence 44444444433 35666654 46664 7899999999999998764 455533
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=267.95 Aligned_cols=261 Identities=19% Similarity=0.277 Sum_probs=223.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|||+|||+|.||..++..|.++|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|++.+
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPH 74 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred cceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHH
Confidence 46999999999999999999999999999999999988877653 4567789888887 9999999998778
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++ +++.+.+.++++||+++++.+.+.+++.+.+.+.|++|+++|+++++..+..+. .+++||+++.++.++++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 154 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHH
Confidence 88888 678888899999999999998878888888888899999999999988888887 78889999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.++.+ ++++++.|++.++|+++|.+.+.++++++|++.++++.| ++++++.+++ ..+...++.+...
T Consensus 155 l~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 223 (299)
T 1vpd_A 155 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 223 (299)
T ss_dssp HHTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHH
T ss_pred HHHHcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHHHh
Confidence 9999975 588899999999999999999999999999999999999 9999988886 4455556666544
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+.+.. +.+.+++.++.+.++++ ++++.|+++|+|+|+..++ .+.+
T Consensus 224 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~-~~~~ 269 (299)
T 1vpd_A 224 APMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTAAV-MEMM 269 (299)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred hhHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 444443 34667788888887765 8999999999999998764 4444
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=276.46 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=201.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCCh-------HHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTT-------SKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRV 76 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~adv 76 (487)
++|||||||+|.||.+||.+|+++| ++|++|||++ +..+++.+. ++ ++ +++++++. +|+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-------g~--~~~s~~e~~~~---aDv 90 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-------GV--EPLDDVAGIAC---ADV 90 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-------TC--EEESSGGGGGG---CSE
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-------CC--CCCCHHHHHhc---CCE
Confidence 3578999999999999999999999 9999999998 334433322 13 56 88888887 999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHH
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 155 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~ 155 (487)
||+|||++.. ..+++++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|+ ..+..|. ++++||+.+
T Consensus 91 Vi~avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~- 167 (317)
T 4ezb_A 91 VLSLVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA- 167 (317)
T ss_dssp EEECCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH-
T ss_pred EEEecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH-
Confidence 9999998754 44568899999999999999999999999999989889999999999996 4566666 889999877
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcc
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGEL 234 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~ 234 (487)
++++++|+.++.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +|++ +.+.+..- +..
T Consensus 168 -~~~~~ll~~~g~~-------v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~~~--~~~ 235 (317)
T 4ezb_A 168 -VEVAERLNALGMN-------LEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQET--FPG 235 (317)
T ss_dssp -HHHHHHHHTTTCE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHHHH--STT
T ss_pred -HHHHHHHHHhCCC-------eEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHHhc--Ccc
Confidence 8999999999965 699998 899999999999999999999999999999999 9995 55554321 112
Q ss_pred hhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 235 LSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 235 ~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
.+| ....+.+..+ +|.++|. +.||++ .+++.|+++|+|+|++.++ .+.+..
T Consensus 236 ~~~--~~~~~~~~~~-~~~~g~~---~~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~ 286 (317)
T 4ezb_A 236 LDW--RDVADYYLSR-TFEHGAR---RVTEMT------EAAETIESFGLNAPMSRAA-CETIAA 286 (317)
T ss_dssp SCH--HHHHHHHHHH-HHHHHHH---HHHHHH------HHHHHHHTTTCCCHHHHHH-HHHHHH
T ss_pred ccH--HHhhhhhhcC-CCCCCcc---hHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 233 2223333332 3555554 356664 8899999999999998764 555433
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=262.84 Aligned_cols=261 Identities=23% Similarity=0.356 Sum_probs=224.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|||+|||+|.||..++.+|.+.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.+
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 73 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPNAGI 73 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHH
Confidence 47999999999999999999999999999999999988876542 4567789998887 9999999998878
Q ss_pred HHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++. ++.+.+.++++||+++++.|...+++.+.+.++|++|+++|+++++..+..|. .+++||+++.++.++++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~l 153 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPV 153 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888885 78888899999999999998888888888888899999999999998888888 78888999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.++.+ ++++++.|+|.++|+++|.+.+..+.++.|++.++++.| ++++++.+++. .+...++.+...
T Consensus 154 l~~~g~~-------~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~ 222 (301)
T 3cky_A 154 LSVIGKD-------IYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAMEAK 222 (301)
T ss_dssp HHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 9999975 478899999999999999999999999999999999999 99999988874 344456666555
Q ss_pred cc-ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 243 AD-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 243 ~~-~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+ .+.. +++.+++.++.+.||++ ++++.++++|+|+|+..+. .+.+
T Consensus 223 ~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~-~~~~ 269 (301)
T 3cky_A 223 MEKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTAMA-TQIF 269 (301)
T ss_dssp CCCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred hhhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHH
Confidence 55 3333 34677889999988875 8999999999999998753 4444
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-31 Score=259.70 Aligned_cols=262 Identities=18% Similarity=0.273 Sum_probs=219.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAG-------EQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 5899999999999999999999999999999999988876542 5567889998887 99999999988788
Q ss_pred HHHHHH---HhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 88 DETIKT---LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl~~---l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
+.++.+ +.+.+.++++||++++..+...+++.+.+.+++..|+++|+++++..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4456788999999999888877777777777889999999999988888888 788999999999999999
Q ss_pred HHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011394 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~ 243 (487)
+.+|.+ +++++..|+|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+...++++....
T Consensus 151 ~~~g~~-------~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~ 219 (296)
T 2gf2_A 151 GCMGSN-------VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYN 219 (296)
T ss_dssp TTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSC
T ss_pred HHHcCC-------eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcC
Confidence 999975 478888999999999999999999999999999999999 99999998874 3444566655432
Q ss_pred c---ccc---cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHh
Q 011394 244 D---IFG---IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFL 297 (487)
Q Consensus 244 ~---~l~---~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~ 297 (487)
+ .+. .+.+|.++|.++.+.||++ ++++.|+++|+|+|+..++ .+.+.
T Consensus 220 ~~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~-~~~~~ 272 (296)
T 2gf2_A 220 PVPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSLA-HQIYR 272 (296)
T ss_dssp SSTTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHH
T ss_pred CcccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 1 111 1234677788998888875 8999999999999998764 45443
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=262.49 Aligned_cols=261 Identities=21% Similarity=0.327 Sum_probs=221.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||+|||+|.||..+|.+|.+.|++|++|| ++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~ 70 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTP 70 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHH
Confidence 56899999999999999999999999999999 998888776542 4567789898877 999999999887
Q ss_pred hHHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHH
Q 011394 86 PVDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIED 161 (487)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ 161 (487)
+++.++. ++.+.+.++++||+++++.|...+++.+.+.++|++|+++|+++++..+..|. .+++|++++.++.+++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ 150 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKP 150 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 7888887 78788889999999999988888888888877899999999999988888888 7888999999999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhh
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~ 241 (487)
+|+.++.+ ++++++.|.+..+|+++|.+.+.+++++.|++.++++.| ++++++.+++ ..+...++.+..
T Consensus 151 ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~ 219 (295)
T 1yb4_A 151 LFDILGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEV 219 (295)
T ss_dssp HHHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHH
T ss_pred HHHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHH
Confidence 99999976 588899999999999999999999999999999999999 9999888886 445555666554
Q ss_pred hccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 242 ~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
..+.+.. +.+.+++..+.+.||++ +.++.++++|+|+|++.++ .+.+
T Consensus 220 ~~~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~ 266 (295)
T 1yb4_A 220 HGERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELF 266 (295)
T ss_dssp HHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHH
T ss_pred hhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 4444443 34677888888888875 8899999999999998754 4443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-31 Score=258.09 Aligned_cols=258 Identities=24% Similarity=0.297 Sum_probs=218.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||+|+|||+|.||..+|.+|++ |++|++|||++++.+.+.+.+. ..++ ++++++. +|+||+|+|++.+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~-------~~~~-~~~~~~~---~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFG-------SEAV-PLERVAE---ARVIFTCLPTTRE 68 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHC-------CEEC-CGGGGGG---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCC-------cccC-HHHHHhC---CCEEEEeCCChHH
Confidence 4799999999999999999999 9999999999999988876542 3344 6666666 9999999998867
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ 165 (487)
++.+++++.+.+.++++||++|+..+...+++.+.+.++|++|+++|+++++..+..|. .+++|++++.++.++++| .
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~ 147 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-A 147 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-T
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-h
Confidence 88899989888999999999999998888888888877789999999999998888888 788899999999999999 9
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc-
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD- 244 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~- 244 (487)
++.+ ++++++.+.+.++|+++|.+.+.++++++|++.++++.| ++++++.+++ ..+...+++++...+
T Consensus 148 ~g~~-------~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~ 216 (289)
T 2cvz_A 148 YAKK-------VVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQ 216 (289)
T ss_dssp TEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHH
T ss_pred hcCC-------eEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccc
Confidence 9865 478898999999999999999999999999999999999 9999988887 445555666665544
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+.. +++.+++.++.+.||++ ++++.++++|+|+|+..+. .+.+
T Consensus 217 ~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v-~~~~ 260 (289)
T 2cvz_A 217 RVLT-RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLLRLA-REVY 260 (289)
T ss_dssp HTTT-SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHHHHH-HHHH
T ss_pred hhhc-CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 2333 34677888999888875 8899999999999998753 4444
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=254.69 Aligned_cols=261 Identities=16% Similarity=0.272 Sum_probs=220.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|+|+|||+|.||..+|.+|++.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|++.+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~ 99 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKA 99 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHH
Confidence 37899999999999999999999999999999999988877643 4567788888887 9999999997778
Q ss_pred HHHHHHHH---hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETIKTL---SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++.++ .+.+.++++||++||..+...+++.+.+..++..|+++|+++++..+..|+ .++++|+++.++.++++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~l 179 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSC 179 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHH
Confidence 88888654 477889999999999998888888888877899999999999988888888 77788899999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+|.+ ++++|+.|.+...|++.|.+....+.++.|++.++++.| ++++++.+++. .+...++.+...
T Consensus 180 l~~~g~~-------~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~ 248 (316)
T 2uyy_A 180 FQAMGKT-------SFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQK 248 (316)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 9999976 478888999999999999999999999999999999999 99999988874 344455555443
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+.+.. +++.+++.++.+.++++ ++++.++++|+|+|+..++ .+.+
T Consensus 249 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v-~~~~ 294 (316)
T 2uyy_A 249 CQNILQ-GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAAAA-NEVY 294 (316)
T ss_dssp HHHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHH
T ss_pred hHHhhc-CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHH
Confidence 333333 24677888898888865 8899999999999998754 4444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=256.36 Aligned_cols=254 Identities=17% Similarity=0.178 Sum_probs=198.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~~~~~~s~~e~~~~l~ 72 (487)
.+|+|||+|+||.+||.+|+++||+|++||+++++++.+.+... ..+ +++.+++++++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 48999999999999999999999999999999999988865210 011 36778899988887
Q ss_pred CCcEEEEecCCCh----------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhc
Q 011394 73 KPRVIIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGAR 142 (487)
Q Consensus 73 ~advIi~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~ 142 (487)
+|+||+|||++. .++++++++.+.+++|++||++||+.|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999999875 5899999999999999999999999999999998888775432 3445555555555
Q ss_pred CCC---------ccccCCC-HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011394 143 HGP---------SLMPGGS-FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212 (487)
Q Consensus 143 ~G~---------~i~~gg~-~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~ 212 (487)
.|. .+++|++ +++.+.++++|+.++.+. ..++++++.+.|+.+|+++|.+.+..+++++|+..+++
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 238 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQ----SAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCE 238 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC---------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCC----CeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 5788885 889999999998876420 01478889999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 213 SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 213 ~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
+.| +|++++.+++. .+. ++....+.. +++|-..-+.||+. ..+..|.++|+++|++.++
T Consensus 239 ~~G-iD~~~v~~~~~---~~~------rig~~~l~p----g~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~~~ 297 (446)
T 4a7p_A 239 QVG-ADVQEVSRGIG---MDN------RIGGKFLHA----GPGYGGSCFPKDTL------ALMKTAADNETPLRIVEAT 297 (446)
T ss_dssp HTT-CCHHHHHHHHH---TST------TC---CCCC----CSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred HcC-CCHHHHHHHHh---cCC------CCCCccCCC----CCCcchhhHHHHHH------HHHHHHHhcCCCCHHHHHH
Confidence 999 99999999973 221 111122222 22333344555553 6788999999999999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=251.92 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=197.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|+||.++|.+|+++||+|++||+++++++.+.+... ..+ ++..+++++++++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~~-- 78 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVPE-- 78 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHhc--
Confidence 79999999999999999999999999999999999988876210 011 35677889988887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe---EEecCCCCChhh
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL---YLGMGVSGGEEG 140 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~---~i~~pvsgg~~~ 140 (487)
+|+||+|||++. .++++++++.+.+.++++||+.||+.|.+++++.+.+.+.+.. ..+.++.++|+.
T Consensus 79 -aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~ 157 (450)
T 3gg2_A 79 -ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEF 157 (450)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred -CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhh
Confidence 999999999874 7899999999999999999999999999999888777654211 123344444444
Q ss_pred hcCCC---------ccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 141 ARHGP---------SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 141 a~~G~---------~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
++.|. .+++|| ++++.+.++++|+.++.+ ..++++++.+.++++|+++|.+.+..+++++|+..+
T Consensus 158 a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~-----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 232 (450)
T 3gg2_A 158 LKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN-----NFRVLFMDIASAEMTKYAANAMLATRISFMNDVANL 232 (450)
T ss_dssp CCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS-----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC-----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 477786 589999999999988752 113678889999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
+++.| +|++++.+++. .+. ++....+..+ ++|-..-+.||+. ..+..|.++|+++|++.+
T Consensus 233 ~~~~G-id~~~v~~~~~---~~~------rig~~~~~pg----~G~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 292 (450)
T 3gg2_A 233 CERVG-ADVSMVRLGIG---SDS------RIGSKFLYPG----CGYGGSCFPKDVK------ALIRTAEDNGYRMEVLEA 292 (450)
T ss_dssp HHHHT-CCHHHHHHHHH---TST------TTCSSSCCCS----SCCCSSHHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHhC-CCHHHHHHHHc---CCC------CCCcccCCCC----CCCCcccHHhhHH------HHHHHHHHcCCCcHHHHH
Confidence 99999 99999999973 221 1111222222 2233334455553 678999999999999987
Q ss_pred H
Q 011394 291 S 291 (487)
Q Consensus 291 a 291 (487)
+
T Consensus 293 ~ 293 (450)
T 3gg2_A 293 V 293 (450)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=246.42 Aligned_cols=252 Identities=14% Similarity=0.106 Sum_probs=196.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-----------hcCCCCccccCCHHHHHhhcCC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------KEGDLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~g~~~~~~~~s~~e~~~~l~~ 73 (487)
+.+|||+|||+|+||.++|..|++ ||+|++||+++++++.+.+... ..+..+++.+++++++++.
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~--- 109 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN--- 109 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---
Confidence 456899999999999999999998 9999999999999988765210 0000146778899888887
Q ss_pred CcEEEEecCCCh----------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC
Q 011394 74 PRVIIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 74 advIi~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~ 143 (487)
+|+||+|||++. .++.+++++.+ +.+|++||+.||+.|.+++++.+.+.+.++ ..+|+++++..|..
T Consensus 110 aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v--~~sPe~~~~G~A~~ 186 (432)
T 3pid_A 110 ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV--IFSPEFLREGRALY 186 (432)
T ss_dssp CSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE--EECCCCCCTTSHHH
T ss_pred CCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE--eecCccCCcchhhh
Confidence 999999999872 58888899999 999999999999999999999888766544 45999999887765
Q ss_pred CC----ccccCCCHHHHHHHHHHHHH--HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011394 144 GP----SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (487)
Q Consensus 144 G~----~i~~gg~~~~~~~v~~ll~~--ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i 217 (487)
+. .+++|++++..+++.++|.. ++... .+++++.++|+++|+++|.+.+..+++++|+..+|++.| +
T Consensus 187 ~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~------~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-i 259 (432)
T 3pid_A 187 DNLHPSRIVIGERSARAERFADLLKEGAIKQDI------PTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-L 259 (432)
T ss_dssp HHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSC------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred cccCCceEEecCCHHHHHHHHHHHHhhhccCCC------eEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 42 68999999999999999987 33221 255678999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 218 TNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 218 ~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
|++++.+++. ... ++....+..+-.|++.++.... +.+ .+...|++.+++.++
T Consensus 260 D~~~v~~~~~---~dp------rig~~~~~pg~G~GG~C~pkD~-----------~~L-~~~~~~~~~~li~~~ 312 (432)
T 3pid_A 260 NSKQIIEGVC---LDP------RIGNHYNNPSFGYGGYCLPKDT-----------KQL-LANYESVPNNIIAAI 312 (432)
T ss_dssp CHHHHHHHHH---TST------TTCSSSCCCCSCCCTTTHHHHH-----------HHH-HHHTTTSCCSHHHHH
T ss_pred CHHHHHHHHc---cCC------CCCcccCCCCCCCcccchhhhH-----------HHH-HHHhcCCchhHHHHH
Confidence 9999999873 111 1112223333346666665543 222 233468998888876
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=250.64 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=198.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CC-cEEEEeCChH----HHHHHHHhhh-----------------hcCCCCccccC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTS----KVDETVERAK-----------------KEGDLPLFGFR 62 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~l~~~~~-----------------~~g~~~~~~~~ 62 (487)
.+|||+|||+|+||.++|.+|+++ || +|++||++++ +++.+.+... ..+ ++..++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~tt 94 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTP 94 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeC
Confidence 568999999999999999999999 99 9999999999 8888764210 011 355566
Q ss_pred CHHHHHhhcCCCcEEEEecCCCh-----------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHH--HcC---
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGA-----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELG--- 126 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g--- 126 (487)
+ .+.++. +|+||+|||++. .+..+.+++.+++++|++||+.||+.|.+++++.+.+. ..|
T Consensus 95 d-~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 95 D-FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp C-GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred c-HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 6 566666 999999999873 25667789999999999999999999999998876443 234
Q ss_pred ---CeEEecCCCCChhhhcCC----CccccCCCHHHHHHHHHHHHHH-hccCCCCCCeEEEeCCchhhHHHHhHHHHHHH
Q 011394 127 ---LLYLGMGVSGGEEGARHG----PSLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEY 198 (487)
Q Consensus 127 ---~~~i~~pvsgg~~~a~~G----~~i~~gg~~~~~~~v~~ll~~i-g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~ 198 (487)
+.++++|.++.+..+..+ +.++.|++++.+++++++|+.+ +.. ++++|+.++|+.+|+++|.+.+
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~~aE~~Kl~~N~~~a 243 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVG-------QVIPMSATAAEVTKTAENTFRD 243 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSC-------CEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCC-------eEEeCCHHHHHHHHHHHHHHHH
Confidence 478899998877655433 3688899999999999999999 654 4888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHH
Q 011394 199 GDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQA 278 (487)
Q Consensus 199 ~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a 278 (487)
..+++++|+..+|++.| +|++++.+++. .. +.+++....+..+-.|++. -+-||.. ..+..|
T Consensus 244 ~~Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~----~~~ri~~~~~~PG~G~GG~----c~~KD~~------~l~~~a 305 (478)
T 3g79_A 244 LQIAAINQLALYCEAMG-INVYDVRTGVD---SL----KGEGITRAVLWPGAGVGGH----CLTKDTY------HLERGV 305 (478)
T ss_dssp HHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TS----CCSSSCCCCCCCCSCCCSS----HHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHC---CC----chhhhccccCCCCCCcchh----hHHHHHH------HHHHHH
Confidence 99999999999999999 99999999874 21 1112222233322122333 3444543 678899
Q ss_pred HHcCCC-------chhHHHH
Q 011394 279 ADLSVA-------APTIASS 291 (487)
Q Consensus 279 ~~~gv~-------~P~~~~a 291 (487)
.++|++ .|++.++
T Consensus 306 ~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 306 KIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp TTSSCCCCCCSSCCCHHHHH
T ss_pred HHcCCCcccccchhHHHHHH
Confidence 999987 8888765
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=223.92 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=190.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||||||+|.||.+||.+|+++||+|++||| ++++.+++.+.+ +. ++++++++. +|+||+|||+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 5899999999999999999999999999999 777777776543 33 677888776 999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (487)
.++. +.++.+.+.+ +|||+|++.|.+++++.+.+.+.| |+++|+++++..+..|..++++|+.+ +.+++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5555 4677777755 999999998888877877776666 89999999998888887777788765 78888 999
Q ss_pred HhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 166 VAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
+|.+ ++++++ .|.+..+|+++|.+.+.++.+++|++.++++.| ++++ ..+.+. .+...+++. .. +
T Consensus 141 ~g~~-------~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~~---~~~g~~~~~-~~-~ 206 (264)
T 1i36_A 141 YGLN-------IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEMLE---YTEGNDFRE-SA-I 206 (264)
T ss_dssp GTCE-------EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---TTSCSSTHH-HH-H
T ss_pred cCCe-------eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHHH---HhcCccHHH-HH-H
Confidence 9865 588888 799999999999999999999999999999999 9986 666663 322223332 22 2
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
.+..+ ++.+++. ..++++ .+++.++++ +|+|+..++ .+.+..
T Consensus 207 ~~~~~-~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~v-~~~~~~ 248 (264)
T 1i36_A 207 SRLKS-SCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTCI-IRIFDK 248 (264)
T ss_dssp HHHHH-HHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHHH-HHHHHH
T ss_pred HHhcC-CCCcchh---hHHHHH------HHHHHHHHh-cCchHHHHH-HHHHHH
Confidence 23222 2445544 234443 688999999 999998754 454443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=239.36 Aligned_cols=256 Identities=12% Similarity=0.098 Sum_probs=198.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhh------------hhcCCCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERA------------KKEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~------------~~~g~~~~~~~~s~~e~~~~l 71 (487)
.||||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+.. ......++..+++++++++.
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~- 82 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE- 82 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc-
Confidence 357999999999999999999999 899999999999988753210 00000035667888888887
Q ss_pred CCCcEEEEecCCChh--------------HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 72 QKPRVIIMLVKAGAP--------------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 72 ~~advIi~~vp~~~~--------------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+|+||+|||++.. +..+++++.+.+.++++||++||+.|.+++++.+.+.+.+..+++.+|+++
T Consensus 83 --aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~ 160 (467)
T 2q3e_A 83 --ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSN 160 (467)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred --CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeC
Confidence 9999999998753 567778888989999999999999999998888888776655667788888
Q ss_pred hhhhcCCC-c--------cccCC-----CHHHHHHHHHHHHHH-hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHH
Q 011394 138 EEGARHGP-S--------LMPGG-----SFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQ 202 (487)
Q Consensus 138 ~~~a~~G~-~--------i~~gg-----~~~~~~~v~~ll~~i-g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~ 202 (487)
++.+..|. . +++|| ++++.+.++++|+.+ +.. ++++++.+.++.+|++.|.+.+..++
T Consensus 161 Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~-------~~~~~~~~~ae~~Kl~~N~~~a~~ia 233 (467)
T 2q3e_A 161 PEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPRE-------KILTTNTWSSELSKLAANAFLAQRIS 233 (467)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGG-------GEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCC-------eEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 88777777 3 67888 778899999999998 544 37888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcC
Q 011394 203 LIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLS 282 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~g 282 (487)
+++|+..++++.| +|++++.+++..+.. +....+..+-.|++.++ .||+. ..+..|.++|
T Consensus 234 ~~nE~~~l~~~~G-id~~~v~~~~~~~~~---------~~~~~~~pg~g~gg~c~----~kD~~------~l~~~a~~~g 293 (467)
T 2q3e_A 234 SINSISALCEATG-ADVEEVATAIGMDQR---------IGNKFLKASVGFGGSCF----QKDVL------NLVYLCEALN 293 (467)
T ss_dssp HHHHHHHHHHHHT-CCHHHHHHHHHTSTT---------TCSSSCCCCSCCCSSSH----HHHHH------HHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cCHHHHHHHHcCCCC---------CCccccCCCCCCCCccH----HHHHH------HHHHHHHHcC
Confidence 9999999999999 999999999853211 11112222222444433 34543 6788999999
Q ss_pred CC--chhHHHH
Q 011394 283 VA--APTIASS 291 (487)
Q Consensus 283 v~--~P~~~~a 291 (487)
++ .+++.++
T Consensus 294 ~~~~~~~~~~~ 304 (467)
T 2q3e_A 294 LPEVARYWQQV 304 (467)
T ss_dssp CHHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 97 4555544
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=232.95 Aligned_cols=202 Identities=12% Similarity=0.151 Sum_probs=169.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~~~~~~s~~e~~~~l~ 72 (487)
.|..|||+|+||.+||.+|+++||+|++||+++++++.+.+.... .+ ++..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 479999999999999999999999999999999999998753110 00 1222332 23
Q ss_pred CCcEEEEecCCCh-----------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH-cC------CeEEecCC
Q 011394 73 KPRVIIMLVKAGA-----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LG------LLYLGMGV 134 (487)
Q Consensus 73 ~advIi~~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g------~~~i~~pv 134 (487)
.+|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999985 267777899999999999999999999999998876544 45 36889998
Q ss_pred CCChhhhcCC---C-ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 135 SGGEEGARHG---P-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 135 sgg~~~a~~G---~-~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
+..+..+..+ + .++.|+++++.+.++++|+.++.. .+++|+.++|+.+|+++|.+.+..+++++|+..+
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l 235 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQG-------EMIETDARTAEMSKLMENTYRDVNIALANELTKI 235 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCS-------CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCC-------cEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776554332 3 688899999999999999999865 3788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 011394 211 LKSVGKLTNEELQNVF 226 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~ 226 (487)
|++.| +|.+++.+++
T Consensus 236 ~e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 236 CNNLN-INVLDVIEMA 250 (431)
T ss_dssp HHHTT-CCHHHHHHHH
T ss_pred HHHcC-CCHHHHHHHH
Confidence 99999 9999999987
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=229.33 Aligned_cols=258 Identities=15% Similarity=0.109 Sum_probs=194.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~~~~~~s~~e~~~~l 71 (487)
.|||+|||+|+||.++|..|+++||+|++||+++++++.+.+.+.. .+ ++..++++++.++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~--~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAG--RLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEECCHHHHHHH-
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccC--CEEEECCHHHHhhc-
Confidence 4799999999999999999999999999999999999988754200 00 35677888888777
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc---CCeE-EecCCCCCh
Q 011394 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL---GLLY-LGMGVSGGE 138 (487)
Q Consensus 72 ~~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~---g~~~-i~~pvsgg~ 138 (487)
+|+||+|||++ ..++++++++.+.+.++++||+.||+.|.+++++.+.+.+. | .| ++.++.++|
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~P 161 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNP 161 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECC
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEECh
Confidence 99999999986 68999999999999999999999999999988887766553 3 22 344555566
Q ss_pred hhhcCCC---------ccccCCC-H----HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHH
Q 011394 139 EGARHGP---------SLMPGGS-F----EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLI 204 (487)
Q Consensus 139 ~~a~~G~---------~i~~gg~-~----~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~ 204 (487)
+.+..|. .++.|++ + ++.+.++++|+.+..+ ..++++++.+.+.+.|++.|.+....++++
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~ 236 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN-----HERTLYMDVRSAEFTKYAANAMLATRISFM 236 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS-----SCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc-----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554 4677775 5 7889999999987641 124788889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCC
Q 011394 205 AEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA 284 (487)
Q Consensus 205 ~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~ 284 (487)
+|+..++++.| +|.+++.+.+.. . + ++....+..+-.+++.++ .+|.. ..+..|+++|++
T Consensus 237 nE~~~la~~~G-id~~~v~~~i~~---~---~---rig~~~~~pG~g~gg~c~----~kD~~------~l~~~A~~~gv~ 296 (478)
T 2y0c_A 237 NELANLADRFG-ADIEAVRRGIGS---D---P---RIGYHFLYAGCGYGGSCF----PKDVE------ALIRTADEHGQS 296 (478)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHT---S---T---TTCSTTCCCSSCCCSSSH----HHHHH------HHHHHHHHTTCC
T ss_pred HHHHHHHHHhC-CCHHHHHHHHhc---C---C---ccCcccCCCCcccccCcC----HHHHH------HHHHHHHHcCCC
Confidence 99999999999 999998887631 0 1 011111121111233332 23332 678899999999
Q ss_pred chhHHHHHHHHH
Q 011394 285 APTIASSLDARF 296 (487)
Q Consensus 285 ~P~~~~a~~~r~ 296 (487)
+|++.++ .+.+
T Consensus 297 ~pl~~~v-~~in 307 (478)
T 2y0c_A 297 LQILKAV-SSVN 307 (478)
T ss_dssp CHHHHHH-HHHH
T ss_pred cHHHHHH-HHHH
Confidence 9998865 4444
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=233.38 Aligned_cols=256 Identities=15% Similarity=0.120 Sum_probs=193.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh---cC---------CCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------DLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~~~~~~s~~e~~~~l 71 (487)
+||||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+.... .+ ..++..++++++.++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~- 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE- 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc-
Confidence 357999999999999999999998 79999999999999887642100 00 0024567788787777
Q ss_pred CCCcEEEEecCCCh--------------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH-cCC------eEE
Q 011394 72 QKPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LGL------LYL 130 (487)
Q Consensus 72 ~~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~------~~i 130 (487)
+|+||+|||++. .++++++++.+++.++++||++||..|.+++++.+.+.+ .++ .+.
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 999999998864 388888999999999999999999999999888887776 542 234
Q ss_pred ecCCCCChhhhc----CCCccccCCCH-----HHHHHHHHHHHHHhc-cCCCCCCeEEEeCCchhhHHHHhHHHHHHHHH
Q 011394 131 GMGVSGGEEGAR----HGPSLMPGGSF-----EAYKYIEDILLKVAA-QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD 200 (487)
Q Consensus 131 ~~pvsgg~~~a~----~G~~i~~gg~~-----~~~~~v~~ll~~ig~-~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~ 200 (487)
..|.+..+..+. ..+.+++|++. ++++.++++|+.++. . ++++++.+.++++|++.|.+....
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~-------~~~~~d~~~ae~~Kl~~N~~~a~~ 237 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRN-------RIITTNTWSSELSKLVANAFLAQR 237 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGG-------GEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCC-------eEEecCHHHHHHHHHHHHHHHHHH
Confidence 556555443332 22257777754 578899999999984 4 377888999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHH
Q 011394 201 MQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 280 (487)
Q Consensus 201 ~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~ 280 (487)
+++++|+..++++.| +|++++.+++. .+. ++....+..+..|++.+ +.||+. ..+..|.+
T Consensus 238 ia~~nE~~~la~~~G-id~~~v~~~~~---~~~------ri~~~~~~pg~g~gg~c----~~KD~~------~l~~~A~~ 297 (481)
T 2o3j_A 238 ISSINSISAVCEATG-AEISEVAHAVG---YDT------RIGSKFLQASVGFGGSC----FQKDVL------SLVYLCES 297 (481)
T ss_dssp HHHHHHHHHHHHHHS-CCHHHHHHHHH---TST------TTCSSSCCCCSCCCSSS----HHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCHHHHHHHHc---cCC------CCCCCCCCCCCccCCcc----HHHHHH------HHHHHHHH
Confidence 999999999999999 99999999873 221 11112222222233333 345543 67889999
Q ss_pred cCCC--chhHHHH
Q 011394 281 LSVA--APTIASS 291 (487)
Q Consensus 281 ~gv~--~P~~~~a 291 (487)
+|+| +|++.++
T Consensus 298 ~g~~~~~~l~~~~ 310 (481)
T 2o3j_A 298 LNLPQVADYWQGV 310 (481)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCCccchHHHHH
Confidence 9999 8988765
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=225.50 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=188.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|+||.++|..|+++||+|++||+++++++.+.+.+.. .+ ++..+++++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 589999999999999999999999999999999999887652100 11 25667888887776
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHhhcccC---CCEEEecCCCCchh-HHHHHHHHHHc-CCeE-EecCCCCC
Q 011394 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEK---GDCIIDGGNEWYEN-TERREKAMAEL-GLLY-LGMGVSGG 137 (487)
Q Consensus 73 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~---g~iiId~st~~~~~-~~~~~~~l~~~-g~~~-i~~pvsgg 137 (487)
+|+||+|||++.. ++++++++.+.+.+ +++||+.||..|.+ .+.+.+.+.+. |..+ ++.+++++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999998865 89999999999988 99999999999888 55566666554 5443 33444444
Q ss_pred hhhhcCCC---------ccccCCC-HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHH
Q 011394 138 EEGARHGP---------SLMPGGS-FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (487)
Q Consensus 138 ~~~a~~G~---------~i~~gg~-~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea 207 (487)
|+.+..|. .++.|++ +++.+.++++|+.++.+ +++++.+.++++|++.|.+....+++++|+
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~--------v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP--------IIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC--------EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCC--------EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 4667775 88899999999998753 334778999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchh
Q 011394 208 YDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 287 (487)
Q Consensus 208 ~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~ 287 (487)
..++++.| +|.+++.+++. ... .+. .....+..+..|++.++ .+|.. ..+..|+++|+++|+
T Consensus 228 ~~l~~~~G-id~~~v~~~~~---~~~--r~~--~~~~~~~pg~g~gg~~~----~kD~~------~l~~~a~~~g~~~pl 289 (436)
T 1mv8_A 228 GNIAKAVG-VDGREVMDVIC---QDH--KLN--LSRYYMRPGFAFGGSCL----PKDVR------ALTYRASQLDVEHPM 289 (436)
T ss_dssp HHHHHHTT-SCHHHHHHHHT---TCT--TTT--TSSTTCSCCSCCCSSSH----HHHHH------HHHHHHHHTTCCCTT
T ss_pred HHHHHHhC-CCHHHHHHHhc---CCC--CCC--CcccCCCCcccccCcCc----HhhHH------HHHHHHHHcCCCcHH
Confidence 99999999 99999888863 111 000 00111222112333333 23332 677899999999999
Q ss_pred HHHH
Q 011394 288 IASS 291 (487)
Q Consensus 288 ~~~a 291 (487)
+.++
T Consensus 290 ~~~v 293 (436)
T 1mv8_A 290 LGSL 293 (436)
T ss_dssp GGGH
T ss_pred HHHH
Confidence 8875
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=212.40 Aligned_cols=251 Identities=12% Similarity=0.049 Sum_probs=183.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-----------CCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-----------GDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-----------g~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||+|.||.++|.+|++ ||+|++|||++++++.+.+.+... ...++..++++++.++. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 589999999999999999999 999999999999998876543200 00023556778777777 999
Q ss_pred EEEecCCCh----------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC---
Q 011394 77 IIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH--- 143 (487)
Q Consensus 77 Ii~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~--- 143 (487)
||+|||++. .++++++++.+ +.++++||+.||..|..++++.+.+.+. .++.+|.+..+..+..
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999874 58999999999 8999999999999999988887766443 5677887776554432
Q ss_pred CC-ccccCCCH-------HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 011394 144 GP-SLMPGGSF-------EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 144 G~-~i~~gg~~-------~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g 215 (487)
.+ .+++|++. +..+.+.++|..-+.+ ...++++++.+.++++|++.|.+.+..+++++|+..++++.|
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G 229 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKK----NNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRK 229 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC----SCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc----CCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23 57888876 5556666666542211 011367788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 216 KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 216 ~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
+|.+++.+++. .+. ++....+..+-.|++. -+.||.. ..+..| .|+++|++.++
T Consensus 230 -id~~~v~~~~~---~~~------ri~~~~~~pg~g~gg~----c~~kD~~------~l~~~a--~~~~~~l~~~~ 283 (402)
T 1dlj_A 230 -LNSHMIIQGIS---YDD------RIGMHYNNPSFGYGGY----SLPKDTK------QLLANY--NNIPQTLIEAI 283 (402)
T ss_dssp -CCHHHHHHHHH---TST------TTCSSSCCCCSSCCSS----HHHHHHH------HHHHHH--TTSSCSHHHHH
T ss_pred -CCHHHHHHHhc---cCC------CCCcCCCCCCCccCCc----cHHhhHH------HHHHHh--cCCChHHHHHH
Confidence 99999998873 221 1111122221123333 4444542 344555 38999998875
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=212.30 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=199.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---CC----CccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---DL----PLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~~----~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+|||+|||+|.||.++|..|+++|++|++|||++++++.+.+.+.... +. ++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 479999999999999999999999999999999999998887643210 00 24567788888876 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHH----HHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHH
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTE----RREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFE 154 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~----~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~ 154 (487)
+||+. .++++++++.+.+.++++||+++++....+. .+.+.+....+.++..|.+..+..+...+ .++.+.+++
T Consensus 106 aVp~~-~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPSF-AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCHH-HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 99975 8999999999999999999999987665432 22233322345677888776654433333 345567899
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCC-----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~-----------------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i 217 (487)
..+.++++|+..+.+ ++...+ .|.+..+|+.+|.....+...++|+..++++.| .
T Consensus 185 ~~~~v~~lf~~~~~r-------v~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~ 256 (356)
T 3k96_A 185 FSKDLIERLHGQRFR-------VYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-G 256 (356)
T ss_dssp HHHHHHHHHCCSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHhCCCCee-------EEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999876654 233232 256666789999999999999999999999999 9
Q ss_pred CHHHHHHHHHhhccCcchhhhHhhhcccccc---ccCCCCchhHHhhhhccCCCCchHHHH----HHHHHcCCCchhHHH
Q 011394 218 TNEELQNVFTEWNKGELLSFLIEITADIFGI---KDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIAS 290 (487)
Q Consensus 218 ~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~---~~~~~~~~~l~~i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~~ 290 (487)
+++++..+ .|.++ .++.-+++.-+. +..+..+..++.+.+..++..+|..++ +.|+++|+++|++.+
T Consensus 257 ~~~t~~gl-----~g~gD-l~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 257 KQETLTGL-----AGLGD-LVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp CHHHHTST-----TTHHH-HHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ChHhhccc-----chhhH-HHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 99987642 11111 111111110000 000111234566666677888885544 678899999999875
Q ss_pred HHHHHHhhccchHHHHHHHhhc
Q 011394 291 SLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 291 a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
|+ +.+...++.+..+..++.
T Consensus 331 -v~-~il~~~~~~~~~~~~l~~ 350 (356)
T 3k96_A 331 -VH-RILHEDLDPQQAVQELLE 350 (356)
T ss_dssp -HH-HHHHSCCCHHHHHHHHHS
T ss_pred -HH-HHHhCCCCHHHHHHHHHc
Confidence 44 455555666777766654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=209.48 Aligned_cols=255 Identities=16% Similarity=0.115 Sum_probs=186.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh---------------hhhcCCCCccccCCHHHHH
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKKEGDLPLFGFRDPESFV 68 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~~~~~~s~~e~~ 68 (487)
++.|.+|+|||+|+||.++|..|+++||+|+++|.++++++.+.+. ....+ ++..++++++.+
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai 95 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAV 95 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHH
Confidence 4567899999999999999999999999999999999998877531 11111 466788888888
Q ss_pred hhcCCCcEEEEecCCC---------hhHHHHHHHHhhccc---CCCEEEecCCCCchhHHHHHHHHH-Hc----CCeEEe
Q 011394 69 NSIQKPRVIIMLVKAG---------APVDETIKTLSAYME---KGDCIIDGGNEWYENTERREKAMA-EL----GLLYLG 131 (487)
Q Consensus 69 ~~l~~advIi~~vp~~---------~~v~~vl~~l~~~l~---~g~iiId~st~~~~~~~~~~~~l~-~~----g~~~i~ 131 (487)
+. +|++|+|||++ ..++.+.+.+.++++ +|++||..||+.|.+++++...+. +. .+....
T Consensus 96 ~~---ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~ 172 (444)
T 3vtf_A 96 AA---TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVAS 172 (444)
T ss_dssp HT---SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEE
T ss_pred hc---CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeec
Confidence 87 99999999876 246777788877774 689999999999999988765443 32 233445
Q ss_pred cCCCCChhhhc----CCCccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHH
Q 011394 132 MGVSGGEEGAR----HGPSLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAE 206 (487)
Q Consensus 132 ~pvsgg~~~a~----~G~~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~E 206 (487)
+|-+-.+..+. +.+.++.|+ ++.+.+.+.++++.+... ++ +.....++++|++.|.+.+..+++++|
T Consensus 173 ~PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~-------~~-~~~~~~AE~~Kl~eN~~ravnIa~~NE 244 (444)
T 3vtf_A 173 NPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAP-------KL-VMKPREAELVKYASNVFLALKISFANE 244 (444)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSC-------EE-EECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCC-------EE-EechhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56443322221 222455554 677778888888766532 33 345689999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCch
Q 011394 207 AYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (487)
Q Consensus 207 a~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P 286 (487)
...+|++.| +|..++.+.+.. .. ++....+..+-.|++.++..... ..+..|.++|++.+
T Consensus 245 la~ice~~G-iDv~eV~~a~~~--d~-------rig~~~l~PG~G~GG~CipkD~~----------~L~~~a~~~g~~~~ 304 (444)
T 3vtf_A 245 VGLLAKRLG-VDTYRVFEAVGL--DK-------RIGRHYFGAGLGFGGSCFPKDTL----------AFIRFGESLGLEMA 304 (444)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHT--ST-------TSCSTTCCCSSCCCTTTHHHHHH----------HHHHHHHHTTCCCH
T ss_pred HHHHHHHcC-CCHHHHHHHhcc--CC-------CCCCCCCCCCCCCCCcccCcCHH----------HHHHHHHhcCCCHH
Confidence 999999999 999999988731 01 11112344444467776654331 45678999999999
Q ss_pred hHHHH
Q 011394 287 TIASS 291 (487)
Q Consensus 287 ~~~~a 291 (487)
++.++
T Consensus 305 li~a~ 309 (444)
T 3vtf_A 305 ISKAV 309 (444)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88765
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-24 Score=203.96 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=143.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH--------------HHHHHHhhhhcCCCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--------------VDETVERAKKEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~l~~~~~~~g~~~~~~~~s~~e~~~~l 71 (487)
..+||||||+|.||.+||.+|+++||+|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~- 90 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG- 90 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc-
Confidence 3579999999999999999999999999999999987 44443321 12346788888887
Q ss_pred CCCcEEEEecCCChhHHHHHHHH-hhcccCCCEEEecCC-----------CCchhHHHHHHHHHH--------cCCeEEe
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTL-SAYMEKGDCIIDGGN-----------EWYENTERREKAMAE--------LGLLYLG 131 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l-~~~l~~g~iiId~st-----------~~~~~~~~~~~~l~~--------~g~~~i~ 131 (487)
+|+||+|||+. .+.+++.++ .+.+ ++++|||+++ ..|.+.....+.+++ +++.+++
T Consensus 91 --aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~ 166 (245)
T 3dtt_A 91 --AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMN 166 (245)
T ss_dssp --CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSC
T ss_pred --CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccC
Confidence 99999999986 566777777 6777 8999999994 344444444444544 3788999
Q ss_pred cCCCCChhhhcCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHH
Q 011394 132 MGVSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDM 201 (487)
Q Consensus 132 ~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~ 201 (487)
+|+++++..+..|+ +++++| ++++++.++++|+.+|... ++++|+.|+|+.+|+++|.+.....
T Consensus 167 a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~------~~~~G~~g~a~~~k~~~~~~~~l~~ 232 (245)
T 3dtt_A 167 ASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQD------VIDLGDITTARGAEMLLPVWIRLWG 232 (245)
T ss_dssp HHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCC------EEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred HHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCc------eeccCcHHHHHHhhhhHHHHHHHHH
Confidence 99999999888888 677655 6899999999999999642 6899999999999999999776653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=198.29 Aligned_cols=265 Identities=17% Similarity=0.163 Sum_probs=175.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC------CCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD------LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~------~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+||||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+..... .++. ..+.+++.+.++.+|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecce-eecchhhcccCCCCCEEEE
Confidence 36799999999999999999999999999999999999888765421000 0011 1134455442335999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCC--hhhhcCCC-ccc--cC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGG--EEGARHGP-SLM--PG 150 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg--~~~a~~G~-~i~--~g 150 (487)
|+|+. +++++++++.+.+.++++||+++++.. ..+.+.+.+.+. |..++++++++. ......|. .+. .+
T Consensus 81 ~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 81 LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 99975 789999999999999999999988764 333444444332 223334444432 11223455 343 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH---------------------HHHHHHHHHHHH
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYD 209 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~---------------------~~~~~~~~Ea~~ 209 (487)
++++..+.++++|+.++.+ +.+.++.+.+.+.|++.|.+. ..+.+++.|+..
T Consensus 159 ~~~~~~~~~~~ll~~~g~~-------~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~ 231 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAGLN-------PSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAA 231 (316)
T ss_dssp GGHHHHHHHHHHHHHTTCC-------EEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCC-------cEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHH
Confidence 6788899999999999864 467788899999999999642 557789999999
Q ss_pred HHHHhCCCCH--HHHHHHHHhhccCc--chhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCc
Q 011394 210 VLKSVGKLTN--EELQNVFTEWNKGE--LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 285 (487)
Q Consensus 210 l~~~~g~i~~--~~i~~v~~~~~~~~--~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~ 285 (487)
++++.| +++ +.+.+.+..+.... ..++ .++..+++ ..++..+ +.++. | ..++.|+++|+|+
T Consensus 232 la~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~------~~g~~~E-~~~~~-----~-~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 232 VAEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLI------KNHRLTE-IDYIN-----G-AVWRKGQKYNVAT 296 (316)
T ss_dssp HHHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHT------TTCCCCS-GGGTH-----H-HHHHHHHHHTCCC
T ss_pred HHHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHH------HcCCcch-HHHHh-----h-HHHHHHHHhCCCC
Confidence 999999 986 45666664322111 1110 00111120 1112222 33333 3 7889999999999
Q ss_pred hhHHHHHHHHH
Q 011394 286 PTIASSLDARF 296 (487)
Q Consensus 286 P~~~~a~~~r~ 296 (487)
|+.... ...+
T Consensus 297 P~~~~~-~~~~ 306 (316)
T 2ew2_A 297 PFCAML-TQLV 306 (316)
T ss_dssp HHHHHH-HHHH
T ss_pred CHHHHH-HHHH
Confidence 998753 4444
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=188.18 Aligned_cols=187 Identities=12% Similarity=0.192 Sum_probs=139.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||.+||.+|+ +||+|++||+++++++++.+......--+++.++++++ +++ ||+||.|||++.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~ 86 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLN 86 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHH
Confidence 368999999999999999999 99999999999999988876510000002566778876 565 9999999999988
Q ss_pred HHHHH-HHHhhcccCCCEEE-ecCCCCchhHHHHHH-HHHHcCCeEEecCCCCChhhhcCCC--ccccC--CCHHHHHHH
Q 011394 87 VDETI-KTLSAYMEKGDCII-DGGNEWYENTERREK-AMAELGLLYLGMGVSGGEEGARHGP--SLMPG--GSFEAYKYI 159 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~-~l~~~g~~~i~~pvsgg~~~a~~G~--~i~~g--g~~~~~~~v 159 (487)
++.++ .++.+ + ++.+++ |+||..+....+... ..+..|.||++ |+.+ ++ .++.| +++++++++
T Consensus 87 vk~~l~~~l~~-~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 87 TKVEVLREVER-L-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp HHHHHHHHHHT-T-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHH
Confidence 88776 45544 4 888885 677776653322111 11234788888 6543 34 45666 499999999
Q ss_pred HHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
.++++.+|++ ++++|+. |++||.+ ...++|++.++++ | ++++++.+++.
T Consensus 157 ~~l~~~lGk~-------~v~v~d~------fi~Nrll----~~~~~EA~~l~~~-G-v~~e~id~~~~ 205 (293)
T 1zej_A 157 EGFLRELGKE-------VVVCKGQ------SLVNRFN----AAVLSEASRMIEE-G-VRAEDVDRVWK 205 (293)
T ss_dssp HHHHHHTTCE-------EEEEESS------CHHHHHH----HHHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred HHHHHHcCCe-------EEEeccc------ccHHHHH----HHHHHHHHHHHHh-C-CCHHHHHHHHH
Confidence 9999999976 4888864 5555553 3578999999998 8 89999999973
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=198.43 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=176.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
||+|||+|.||.++|.+|+++||+|++|||++++++.+.+.+.... + .++..+++++++++. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 8999999999999999999999999999999999988876542100 0 024556788888776 99999999
Q ss_pred CCChhHHHHHHH----HhhcccC-CCEEEecCCCCch-hHHHHHHHHHHc-C---CeEEecCCCCChhhhcCCC---ccc
Q 011394 82 KAGAPVDETIKT----LSAYMEK-GDCIIDGGNEWYE-NTERREKAMAEL-G---LLYLGMGVSGGEEGARHGP---SLM 148 (487)
Q Consensus 82 p~~~~v~~vl~~----l~~~l~~-g~iiId~st~~~~-~~~~~~~~l~~~-g---~~~i~~pvsgg~~~a~~G~---~i~ 148 (487)
|+ .++++++.+ +.+.+.+ +++||+++++... ..+.+.+.+.+. + ..++.+|...... ..|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~--~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV--ATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH--HTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH--HhCCceEEEE
Confidence 97 588999988 8888888 9999999965433 233334444332 3 2334444332211 2343 344
Q ss_pred cCCCHHHHHHHHHHHHHH--hccCCCCCCeEEEeCCch-----------------hhHHHHhHHHHHHHHHHHHHHHHHH
Q 011394 149 PGGSFEAYKYIEDILLKV--AAQVPDSGPCVTYVSKGG-----------------SGNFVKMIHNGIEYGDMQLIAEAYD 209 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~i--g~~~~~~~~~~~~~G~~G-----------------~g~~~K~v~N~~~~~~~~~~~Ea~~ 209 (487)
.+++++.++.++++|+.. +.+ +++.++.- ....+|+.+|.+......++.|+..
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g~~-------~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~ 243 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRSFV-------CWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRD 243 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhcCCCCeEE-------EEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 566888899999999988 644 34444421 2222355578888889999999999
Q ss_pred HHHHhCCCCHHHHHHHH---HhhccCcchhhhHhhh--ccccccccCCCCchhHHhh----------hhccCCCCchHHH
Q 011394 210 VLKSVGKLTNEELQNVF---TEWNKGELLSFLIEIT--ADIFGIKDDKGDGYLVDKV----------LDKTGMKGTGKWT 274 (487)
Q Consensus 210 l~~~~g~i~~~~i~~v~---~~~~~~~~~s~~~~~~--~~~l~~~~~~~~~~~l~~i----------~~~~~~kgtg~~~ 274 (487)
++++.| ++++++.++. ..|.. ..+...+.. ...+..+ +.++.+ .++++ .+
T Consensus 244 la~a~G-i~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~e~~~~~~------~v 308 (366)
T 1evy_A 244 LTAALG-GDGSAVFGLAGLGDLQLT--CSSELSRNFTVGKKLGKG------LPIEEIQRTSKAVAEGVATAD------PL 308 (366)
T ss_dssp HHHHTT-CCCTTTTSTTTHHHHHHH--HTCTTSHHHHHHHHHHTT------CCHHHHHC---CCCHHHHHHH------HH
T ss_pred HHHHhC-CCCccccccccchhheee--ecCCCCchHHHHHHHhCC------CCHHHHHHHcCCeeehHHHHH------HH
Confidence 999999 9976553320 00000 001111110 0111111 112211 23332 68
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhc
Q 011394 275 VQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 275 ~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
++.|+++|+|+|+.... + +++...++.+..+..++.
T Consensus 309 ~~~a~~~gv~~P~~~~v-~-~~~~~~~~~~~~~~~l~~ 344 (366)
T 1evy_A 309 MRLAKQLKVKMPLCHQI-Y-EIVYKKKNPRDALADLLS 344 (366)
T ss_dssp HHHHHHHTCCCHHHHHH-H-HHHHSCCCHHHHHHHHGG
T ss_pred HHHHHHhCCCCcHHHHH-H-HHHHCCCCHHHHHHHHHc
Confidence 89999999999998753 4 444455666666666654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=178.72 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=160.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||+|||+|.||..++.+|.+.|++|.+|||++++.+.+.+.. ++..+.+++++++. +|+||+|+|+ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~ 71 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-Q 71 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-G
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-H
Confidence 568999999999999999999999999999999999998887643 14567789888876 9999999994 5
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCC--CHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDI 162 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~l 162 (487)
.+.+++.+ +.++++||+.+++.+.. .+.+.+ ..+.+++. ++.+.+.....|. .+++|+ +++.++.++++
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~-~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l 143 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQ--RLATFV-GQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDL 143 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHH--HHHHHH-CTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHH--HHHHhc-CCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHH
Confidence 67776654 34788999996554432 233333 34566776 5556666666777 566766 88999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh-hH
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMI--HNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSF-LI 239 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v--~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~-~~ 239 (487)
|+.+| + ++++++.....++++. .|.+.+.++..++|+ +.+.| +|++++.+++. .+..+++ ++
T Consensus 144 l~~~G-~-------~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~---~~~~~~~~~~ 208 (259)
T 2ahr_A 144 TDSFG-S-------TFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVT---QTVLASASNL 208 (259)
T ss_dssp HHTTE-E-------EEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH---HHHHHHHHHH
T ss_pred HHhCC-C-------EEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH---HHHHHHHHHH
Confidence 99998 3 4788886666666663 355666667777776 67788 99999988874 3333344 33
Q ss_pred hhhc--cccccccCCCCchhHHhhhhcc
Q 011394 240 EITA--DIFGIKDDKGDGYLVDKVLDKT 265 (487)
Q Consensus 240 ~~~~--~~l~~~~~~~~~~~l~~i~~~~ 265 (487)
.... +.+..++.++|++.+...++++
T Consensus 209 ~~~~~~p~~l~~~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 209 KTSSQSPHDFIDAICSPGGTTIAGLMEL 236 (259)
T ss_dssp HHSSSCHHHHHHHHCCTTSHHHHHHHHH
T ss_pred HhcCCCHHHHHHhCCCCChhHHHHHHHH
Confidence 2221 2222122345666666655553
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=184.25 Aligned_cols=200 Identities=11% Similarity=0.120 Sum_probs=160.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||+|+|||+ |.||..+|..|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||+|||+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~- 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN- 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch-
Confidence 579999999 99999999999999999999999999988877632 233 356666665 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCh------hhhcCC-------C-c--cc
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGE------EGARHG-------P-S--LM 148 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~------~~a~~G-------~-~--i~ 148 (487)
.++++++++.+.+.++.+|||+|+..+... +.+ + ..+..|+ .+|++|++ .....| . . +.
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~ 154 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCAL 154 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeec
Confidence 589999999998999999999988764322 222 2 2367899 88999887 556677 2 2 23
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 011394 149 PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFT 227 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~-g~i~~~~i~~v~~ 227 (487)
.+++++.++.++++|+.+|.+. ..++++++.+.+.+.|.+.|+....++..++|++..+.+. | +|++++.+++.
T Consensus 155 ~~~~~~~~~~v~~l~~~~G~~~----~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~~~~~ 229 (286)
T 3c24_A 155 MQGPEEHYAIGADICETMWSPV----TRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAALDFMI 229 (286)
T ss_dssp EESCTHHHHHHHHHHHHHTCSE----EEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCc----ceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 5689999999999999999710 0258888888888779999998889999999988776655 8 99999988874
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-21 Score=193.85 Aligned_cols=275 Identities=12% Similarity=0.055 Sum_probs=172.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc---C-CCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE---G-DLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---g-~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.|||+|||+|.||..||.+|+++|++|++|||++++++.+.+.+... + ..++..++++++ ++. +|+||+|||
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~vk 89 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAIP 89 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECSC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEECC
Confidence 47999999999999999999999999999999999999888765210 0 001356678877 665 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHc-C--CeEEecCCCCChhhhcCCC-c-cccCCCHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAEL-G--LLYLGMGVSGGEEGARHGP-S-LMPGGSFEAY 156 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~-g--~~~i~~pvsgg~~~a~~G~-~-i~~gg~~~~~ 156 (487)
+ .++++++.++.+ ++++||+++++... +.+.+.+.+.+. + ..+..+|....+ ...|. + +..|++. +
T Consensus 90 ~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~--~~~g~~~~~~~g~~~--~ 161 (335)
T 1z82_A 90 V-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEE--VAKKLPTAVTLAGEN--S 161 (335)
T ss_dssp G-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHH--HHTTCCEEEEEEETT--H
T ss_pred H-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHH--HhCCCceEEEEEehh--H
Confidence 6 588998877655 78999999976433 333445554433 2 223344433211 12454 3 3444433 7
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCCc-----------------hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTYVSKG-----------------GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~~G~~-----------------G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
+.++++|+..+.+ +.+.++. |.+..+|+.+|.+...+..++.|+..++++.| +++
T Consensus 162 ~~~~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~~ 233 (335)
T 1z82_A 162 KELQKRISTEYFR-------VYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-ADQ 233 (335)
T ss_dssp HHHHHHHCCSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHhCCCCEE-------EEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 8889999877754 2443331 23344566788888889999999999999999 998
Q ss_pred HHHHHHH---HhhccCcchhhhHhhh--ccccccccCCCCchhHHhhhhccCC-----CCchHHHHHHHHHcCCCchhHH
Q 011394 220 EELQNVF---TEWNKGELLSFLIEIT--ADIFGIKDDKGDGYLVDKVLDKTGM-----KGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 220 ~~i~~v~---~~~~~~~~~s~~~~~~--~~~l~~~~~~~~~~~l~~i~~~~~~-----kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
+++.++. ..+.. ..++..+.. ...+..+ + ..+.+.+..+. |..| .+++.|+++|+|+|+..
T Consensus 234 ~~~~~l~~~~~~~~t--~~s~~~~n~~~~~~~~~g--~----~~~~~~~~~g~~~e~~~~~~-~v~~~a~~~gv~~P~~~ 304 (335)
T 1z82_A 234 KTFMGLAGIGDLMVT--CNSRYSRNRRFGELIARG--F----NPLKLLESSNQVVEGAFTVK-AVMKIAKENKIDMPISE 304 (335)
T ss_dssp HHHTSTTTHHHHHHH--HHCTTCHHHHHHHHHHHT--C----CHHHHHHTCSSCCTHHHHHH-HHHHHHHHTTCCCHHHH
T ss_pred hhhcccccccceeee--ccCccCcHHHHHHHHhCC--C----CHHHHHHhcCCeeeHHHHHH-HHHHHHHHhCCCCcHHH
Confidence 8764421 00000 001111110 1111111 1 12222211111 1122 67889999999999987
Q ss_pred HHHHHHHhhccchHHHHHHHhhc
Q 011394 290 SSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 290 ~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
+. . +.+...++.+.....++.
T Consensus 305 ~v-~-~~~~~~~~~~~~~~~l~~ 325 (335)
T 1z82_A 305 EV-Y-RVVYEGKPPLQSMRDLMR 325 (335)
T ss_dssp HH-H-HHHHSCCCHHHHHHHHHC
T ss_pred HH-H-HHHhCCCCHHHHHHHHHc
Confidence 53 3 444555666666666653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=185.14 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=167.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-----C-CcEEEEeCChHHHHHHHH-hhhhcCC-------CCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-----G-FPISVYNRTTSKVDETVE-RAKKEGD-------LPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~~~~~g~-------~~~~~~~s~~e~~~~l~ 72 (487)
+|||+|||+|.||..+|.+|+++ | ++|++||| +++++.+.+ .+..... .++..+++. +.+..
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 83 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGT-- 83 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCC--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCC--
Confidence 46999999999999999999999 9 99999999 888888876 3321000 001111333 44444
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCC-h-hhhcCCCc
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGG-E-EGARHGPS 146 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg-~-~~a~~G~~ 146 (487)
+|+||+|||+. +++++++++.+.+.++++||+++++. ...+.+.+.+.+ .|+.++++++++. . ..+..|..
T Consensus 84 -~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~ 160 (317)
T 2qyt_A 84 -VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL 160 (317)
T ss_dssp -EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence 99999999987 68999999999998899999998875 333444444433 3556677777642 1 22233443
Q ss_pred c-c----cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHH-------------------HHHH
Q 011394 147 L-M----PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEY-------------------GDMQ 202 (487)
Q Consensus 147 i-~----~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~-------------------~~~~ 202 (487)
+ + .+++.+.+ .+.++|+..+.+ +.+.++.+.+.+.|++.|.+.. ....
T Consensus 161 ~~ig~~~~~~~~~~~-~~~~ll~~~g~~-------~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~ 232 (317)
T 2qyt_A 161 FYFGSGLPEQTDDEV-RLAELLTAAGIR-------AYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLS 232 (317)
T ss_dssp EEEECCSSSCCHHHH-HHHHHHHHTTCC-------EECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHH
T ss_pred EEEcCCCCCCcCHHH-HHHHHHHHCCCC-------CEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 3 33457777 899999998854 4777889999999999998754 3458
Q ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhccccccccCCCCchh--HHhhhhccCCCCchHHHHHHH
Q 011394 203 LIAEAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYL--VDKVLDKTGMKGTGKWTVQQA 278 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~~~--~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~--l~~i~~~~~~kgtg~~~~~~a 278 (487)
++.|++.++++.| ++++ .+.+++...... .......++. ++..++. ++.+ .| ++++.|
T Consensus 233 ~~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~~-----~~~~~~sm~~---d~~~g~~~E~~~~--------~g-~~~~~a 294 (317)
T 2qyt_A 233 LLEEVAELFRAKY-GQVPDDVVQQLLDKQRKM-----PPESTSSMHS---DFLQGGSTEVETL--------TG-YVVREA 294 (317)
T ss_dssp HHHHHHHHHHHHT-SCCCSSHHHHHHHHHHHC----------------------------CTT--------TH-HHHHHH
T ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHhcc-----CCCCCChHHH---HHHcCCccCHHHH--------hh-HHHHHH
Confidence 9999999999999 9864 566665432110 0011111111 1222222 3332 22 789999
Q ss_pred HHcCCCchhHHHH
Q 011394 279 ADLSVAAPTIASS 291 (487)
Q Consensus 279 ~~~gv~~P~~~~a 291 (487)
+++|+|+|+....
T Consensus 295 ~~~gv~~P~~~~~ 307 (317)
T 2qyt_A 295 EALRVDLPMYKRM 307 (317)
T ss_dssp HHTTCCCHHHHHH
T ss_pred HHcCCCCCHHHHH
Confidence 9999999998753
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=181.69 Aligned_cols=197 Identities=18% Similarity=0.166 Sum_probs=151.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+|+|+|||+|.||..++..|++.|++ |.+|||++++.+++.+.. ++..+.+++++++. +|+||+++|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~- 79 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS- 79 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH-
Confidence 57999999999999999999999999 999999999998887652 24567788877665 99999999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccc-cCCCHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM-PGGSFEAYKYIEDILL 164 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~-~gg~~~~~~~v~~ll~ 164 (487)
.+.++++++.+.++++++||+++++.+.+. +.+.+...+..+..+|++|++.....+..++ .+++++.++.++++|+
T Consensus 80 ~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 157 (266)
T 3d1l_A 80 AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIAS 157 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHH
Confidence 678899999888889999999999987654 3333333355566778877544322333444 4889999999999999
Q ss_pred HHhccCCCCCCeEEEeCCch---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 165 KVAAQVPDSGPCVTYVSKGG---SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G---~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
.+|.+ ++++++.+ -...+|+++|.. ..+..++|+ ++++.| ++++++.+++.
T Consensus 158 ~~g~~-------~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~ 211 (266)
T 3d1l_A 158 TLSNR-------VYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLID 211 (266)
T ss_dssp TTCSC-------EEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHH
T ss_pred hcCCc-------EEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHH
Confidence 99865 58888755 456789999984 345666776 567888 99999888874
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-21 Score=189.14 Aligned_cols=256 Identities=18% Similarity=0.239 Sum_probs=168.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCcc-ccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLF-GFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~~~-~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+.. +. .... ..++. +.++. +|+||+|||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETD-GSIFNESLTANDP-DFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTT-SCEEEEEEEESCH-HHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCC-CceeeeeeeecCc-cccCC---CCEEEEEecHH-
Confidence 589999999999999999999999999999998765443221100 00 0001 13343 45555 99999999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCC-hhhhcCCC-cccc-CCCHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGG-EEGARHGP-SLMP-GGSFEAYKYIE 160 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pvsgg-~~~a~~G~-~i~~-gg~~~~~~~v~ 160 (487)
+++++++++.+.+.++++||+++++. ...+.+.+.+.+ .|..+.++...+. ...+..|. .+.+ +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 68999999999999999999998765 222233333322 1222212222222 23344566 4443 45677788999
Q ss_pred HHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhCCCCH--H
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVGKLTN--E 220 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~------------------~~~~~~~~Ea~~l~~~~g~i~~--~ 220 (487)
++|+.++.+ +.+.++.+.+.+.|++.|... ..+.+++.|+..++++.| ++. +
T Consensus 154 ~ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~ 225 (291)
T 1ks9_A 154 DILQTVLPD-------VAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAE 225 (291)
T ss_dssp HHHHTTSSC-------EEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHH
T ss_pred HHHHhcCCC-------CeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence 999998865 577888999999999999987 678899999999999999 886 4
Q ss_pred HHHHHHHhh-cc-CcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 221 ELQNVFTEW-NK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 221 ~i~~v~~~~-~~-~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
++.+.+... .. +...|.++ .++... .. ..++.+ .| ++++.|+++|+|+|+.... .+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~ssm~---~d~~~g-~~----~e~~~~--------~g-~~~~~a~~~gv~~P~~~~~-~~~~ 285 (291)
T 1ks9_A 226 DLRDYVMQVIDATAENISSML---QDIRAL-RH----TEIDYI--------NG-FLLRRARAHGIAVPENTRL-FEMV 285 (291)
T ss_dssp HHHHHHHHHHHHTTTCCCHHH---HHHHTT-CC----CSGGGT--------HH-HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHhcCCCCCChHH---HHHHcC-Cc----cHHHHH--------HH-HHHHHHHHhCCCCCHHHHH-HHHH
Confidence 543322221 11 11222232 222221 11 122322 23 6889999999999998753 4433
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=180.28 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=144.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHhhhhc--C-C-CCccccC--CHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKKE--G-D-LPLFGFR--DPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~--g-~-~~~~~~~--s~~e~~~~l~~advIi~ 79 (487)
|||+|||+|.||..+|..|+++|++|++||| ++++++.+.+.+... + . .++..++ +++++++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 5899999999999999999999999999999 999988877654210 0 0 0123444 67776665 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC---c-hhHHHHHHHHHHc-CC----eEEecCCCCChhhhcCCC--ccc
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW---Y-ENTERREKAMAEL-GL----LYLGMGVSGGEEGARHGP--SLM 148 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~---~-~~~~~~~~~l~~~-g~----~~i~~pvsgg~~~a~~G~--~i~ 148 (487)
|||+. +++++++++.+ +.++++||+++++. + ...+.+.+.+.+. |. .+...|.. ......|. .++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~--~~~~~~g~~~~~~ 153 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI--AREVAKRMPTTVV 153 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC--HHHHHTTCCEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc--HHHHHccCCcEEE
Confidence 99986 78999999999 98999999998765 2 3444455555442 32 12233322 11111233 344
Q ss_pred c-CCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCc-----------------hhhHHHHhH-----HHHHHHHHHHHHH
Q 011394 149 P-GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG-----------------GSGNFVKMI-----HNGIEYGDMQLIA 205 (487)
Q Consensus 149 ~-gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~-----------------G~g~~~K~v-----~N~~~~~~~~~~~ 205 (487)
+ +++++..+.++++|+..+.+ +.+.++. |....+|+. +|.+...+.+++.
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 226 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEYFG-------VEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAIN 226 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCcEE-------EEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4 45788899999999987764 3555654 333445777 8888888999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 011394 206 EAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 206 Ea~~l~~~~g~i~~~~i~ 223 (487)
|+..++++.| ++++++.
T Consensus 227 E~~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 227 EMAELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHHHT-SCGGGGG
T ss_pred HHHHHHHHHC-CCcchhh
Confidence 9999999999 9987653
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=185.82 Aligned_cols=284 Identities=10% Similarity=0.064 Sum_probs=179.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhc----C---CCCccccCCHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKE----G---DLPLFGFRDPESF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~~~~~~s~~e~ 67 (487)
||||+|||+|.||.+||..|+++| ++|++|||+++ +++.+.+.+... + ..++..+++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 568999999999999999999999 99999999998 888876643110 0 0034566788888
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhh----cccCCCEEEecCCCCch---hHHHHHHHHHHc-C--CeEEecCCCCC
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSA----YMEKGDCIIDGGNEWYE---NTERREKAMAEL-G--LLYLGMGVSGG 137 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~----~l~~g~iiId~st~~~~---~~~~~~~~l~~~-g--~~~i~~pvsgg 137 (487)
++. +|+||+|||+ .+++++++++.+ .+.++++||+++++... ..+.+.+.+.+. + ..++.+|....
T Consensus 101 ~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~ 176 (375)
T 1yj8_A 101 IND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAM 176 (375)
T ss_dssp HTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHH
T ss_pred HcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHH
Confidence 776 9999999997 589999999998 89899999999976443 122233333331 2 22333343221
Q ss_pred hhhhcCCC---ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCch-----------------hhHHHHhHHHHHH
Q 011394 138 EEGARHGP---SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG-----------------SGNFVKMIHNGIE 197 (487)
Q Consensus 138 ~~~a~~G~---~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G-----------------~g~~~K~v~N~~~ 197 (487)
+. ..|. .++.+++++..+.++++|+..+.+ +++.++.- ....+|+.+|...
T Consensus 177 ~v--~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~ 247 (375)
T 1yj8_A 177 DV--AMENFSEATIGGNDKDSLVIWQRVFDLPYFK-------INCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS 247 (375)
T ss_dssp HH--HTTCCEEEEEECSCHHHHHHHHHHHCBTTEE-------EEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HH--HhCCCeEEEEecCCHHHHHHHHHHhCCCCeE-------EEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Confidence 11 2333 344567888899999999987754 35555432 2222355578888
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCHHHHHH------HHHhhccCcchhhhHhhhcccccc-ccCCCCchhHHhhhhcc--CC
Q 011394 198 YGDMQLIAEAYDVLKSVG-KLTNEELQN------VFTEWNKGELLSFLIEITADIFGI-KDDKGDGYLVDKVLDKT--GM 267 (487)
Q Consensus 198 ~~~~~~~~Ea~~l~~~~g-~i~~~~i~~------v~~~~~~~~~~s~~~~~~~~~l~~-~~~~~~~~~l~~i~~~~--~~ 267 (487)
.....++.|+..++++.| |++++++.+ ++.+... .+++.+ ...+.. ++.++ ++.+.++. ++
T Consensus 248 a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~--~~~~~~---~~~~~~~g~~~~----~~d~~~~~~~g~ 318 (375)
T 1yj8_A 248 AIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLA--GRNAKC---SAEFIKSTPKKT----WEELENEILKGQ 318 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS--SSHHHH---HHHHHHHTTSSC----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeC--CccHHH---HHHHHhcCCCCC----HHHHHHhhcCCc
Confidence 899999999999999995 598876532 2221111 111111 111111 00011 11111111 11
Q ss_pred CCch----HHHHHHHHHcCC--CchhHHHHHHHHHhhccchHHHHHHHhhcCC
Q 011394 268 KGTG----KWTVQQAADLSV--AAPTIASSLDARFLSGLKEERVEAAKVFKSG 314 (487)
Q Consensus 268 kgtg----~~~~~~a~~~gv--~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~ 314 (487)
+-++ ..+++.|+++|+ |+|+.... .+.+...++.+..+..+...|
T Consensus 319 ~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 319 KLQGTVTLKYVYHMIKEKNMTNEFPLFTVL--HKISFENEDPSSLLKTFMNNK 369 (375)
T ss_dssp CCHHHHHHHHHHHHHHHTTCGGGCHHHHHH--HHHHHSCCCTTHHHHHHSSCC
T ss_pred EeeHHHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHhCCCCHHHHHHHHHcCc
Confidence 1111 157789999999 99998753 455556667777777665443
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=173.63 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=141.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+|||+|||+|.||.+||.+|+++| ++|++|||+++ +++.+.+.+ +..+.++.++++. +|+||+|
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVila 91 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLFLA 91 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEEEE
Confidence 578999999999999999999999 89999999986 777776443 5567788888887 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEecCCCCChhhhcCCCccccCCC---HHH
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLYLGMGVSGGEEGARHGPSLMPGGS---FEA 155 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pvsgg~~~a~~G~~i~~gg~---~~~ 155 (487)
||+ .++++++.++.+.+.++++||+++++.+.. .+.+.+.+. +.+++.+... .+.....|.+++++|+ ++.
T Consensus 92 v~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~--~l~~~l~~~~~~~~vv~~~p~-~p~~~~~g~~v~~~g~~~~~~~ 167 (322)
T 2izz_A 92 VKP-HIIPFILDEIGADIEDRHIVVSCAAGVTIS--SIEKKLSAFRPAPRVIRCMTN-TPVVVREGATVYATGTHAQVED 167 (322)
T ss_dssp SCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCHH--HHHHHHHTTSSCCEEEEEECC-GGGGGTCEEEEEEECTTCCHHH
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH--HHHHHHhhcCCCCeEEEEeCC-cHHHHcCCeEEEEeCCCCCHHH
Confidence 995 689999999999898999999998877543 345555542 3456543222 2222234445666665 788
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHh--HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~--v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
++.++++|+.+|.. +++.+........+ ..+.+.+.++..++|+ +.+.| ++++++.+++.
T Consensus 168 ~~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~ 229 (322)
T 2izz_A 168 GRLMEQLLSSVGFC--------TEVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGA 229 (322)
T ss_dssp HHHHHHHHHTTEEE--------EECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCE--------EEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999864 34444333333333 2245555556666665 56778 99999888874
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=175.08 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=161.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||+|||+|.||..+|.+|+++| ++|++|||++++.+++.+.. ++..+.++++++ . +|+||+|+| +.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 58999999999999999999999 99999999999998887642 245566776666 5 999999999 567
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCC--CHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDIL 163 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~ll 163 (487)
+++++.++.+ . +++||+++++.+. +.+.+.+. .+.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888876655 4 8999999555543 33444443 35678877 666666666676 577777 889999999999
Q ss_pred HHHhccCCCCCCeEEEeC-C---------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc
Q 011394 164 LKVAAQVPDSGPCVTYVS-K---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGE 233 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G-~---------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~ 233 (487)
+.+|.. ++++ + .|++. .+.+..+..+.|+ +++.| ++++++.+++... .
T Consensus 143 ~~~g~~--------~~~~~~~~~~~~~al~g~~~-------~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~---~ 200 (263)
T 1yqg_A 143 KSVGLT--------VWLDDEEKMHGITGISGSGP-------AYVFYLLDALQNA---AIRQG-FDMAEARALSLAT---F 200 (263)
T ss_dssp HTTEEE--------EECSSTTHHHHHHHHTTSHH-------HHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHH---H
T ss_pred HhCCCE--------EEeCChhhccHHHHHHccHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH---H
Confidence 999864 3777 4 23332 3345556666666 67788 9999888887432 2
Q ss_pred chhh-hHhhhc--c-ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 234 LLSF-LIEITA--D-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 234 ~~s~-~~~~~~--~-~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+++ ++.... + .+... .+.|++.+...++ ...+.|++.|+..+ +.+-+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-------------~l~~~~~~~~~~~a-~~~~~ 252 (263)
T 1yqg_A 201 KGAVALAEQTGEDFEKLQKN-VTSKGGTTHEAVE-------------AFRRHRVAEAISEG-VCACV 252 (263)
T ss_dssp HHHHHHHHHHCCCHHHHHHH-TCCTTSHHHHHHH-------------HHHHTTHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHh-cCCCChhHHHHHH-------------HHHHCCHHHHHHHH-HHHHH
Confidence 2232 333221 2 23322 2455555554443 34668899888754 34433
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=173.41 Aligned_cols=202 Identities=8% Similarity=0.028 Sum_probs=141.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhc----C---CCCccccCCHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKE----G---DLPLFGFRDPESF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~~~~~~s~~e~ 67 (487)
+|||+|||+|.||..+|..|+++| ++|++|||+++ +.+.+.+.+... + ..++..+++++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 368999999999999999999999 99999999998 887776532110 0 0024556788887
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCc---hhHHHHHHHHHHc-C--CeEEecCCCCChhhh
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY---ENTERREKAMAEL-G--LLYLGMGVSGGEEGA 141 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~---~~~~~~~~~l~~~-g--~~~i~~pvsgg~~~a 141 (487)
++. +|+||+|||+ ..++++++++.+.+.++++||+++++.. ...+.+.+.+.+. + ..++.+|.... ..
T Consensus 88 ~~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~--~v 161 (354)
T 1x0v_A 88 AED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIAS--EV 161 (354)
T ss_dssp HTT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHH--HH
T ss_pred HcC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHH--HH
Confidence 776 9999999997 4899999999999999999999998653 2222222322221 3 22233343211 11
Q ss_pred cCCC---ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHH-----------------hHHHHHHHHHH
Q 011394 142 RHGP---SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVK-----------------MIHNGIEYGDM 201 (487)
Q Consensus 142 ~~G~---~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K-----------------~v~N~~~~~~~ 201 (487)
..|. .++.+++++..+.++++|+..+.+ +++.++.-...+.| +.+|.......
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~ 234 (354)
T 1x0v_A 162 ADEKFCETTIGCKDPAQGQLLKELMQTPNFR-------ITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIR 234 (354)
T ss_dssp HTTCCEEEEEECSSHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhCCCCEE-------EEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 2343 234566788899999999988764 35555533333333 34787888899
Q ss_pred HHHHHHHHHHHHhCCC---CHHHH
Q 011394 202 QLIAEAYDVLKSVGKL---TNEEL 222 (487)
Q Consensus 202 ~~~~Ea~~l~~~~g~i---~~~~i 222 (487)
.++.|+..++++.| + +++++
T Consensus 235 ~~~~E~~~la~a~G-~~~~~~~~~ 257 (354)
T 1x0v_A 235 LGLMEMIAFAKLFC-SGPVSSATF 257 (354)
T ss_dssp HHHHHHHHHHHHHS-SSCCCGGGG
T ss_pred HHHHHHHHHHHHhc-CCCCCcccc
Confidence 99999999999999 8 87664
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=166.87 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=135.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHH-HHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES-FVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e-~~~~l~~advIi~~vp~ 83 (487)
+|||||||+|.||.++|+.|.++|+ +|++|||++++++.+.+.+.. ...++++++ +++. +|+||+|||.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp~ 104 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 104 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCCH
Confidence 4789999999999999999999999 999999999998887765421 134677888 7776 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC----hhhhc----CCC-cccc---C
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 150 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg----~~~a~----~G~-~i~~---g 150 (487)
. .+.++++++.+.++++.+|+|++++.+...+.+.+.+.. +|++ .|++|+ +..+. .|. .+++ +
T Consensus 105 ~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~ 180 (314)
T 3ggo_A 105 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 180 (314)
T ss_dssp G-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT
T ss_pred H-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC
Confidence 6 688899999999999999999999887666666555433 7886 588884 44343 465 4444 4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG 195 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~ 195 (487)
++++.++.++++|+.+|++ ++++++......+.++...
T Consensus 181 ~~~~~~~~v~~l~~~~G~~-------v~~~~~~~hD~~~a~~s~l 218 (314)
T 3ggo_A 181 TDKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHL 218 (314)
T ss_dssp SCHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHH
Confidence 6889999999999999976 5888887777777777644
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=159.50 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=134.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+|||+|||+|.||.+++.+|.++|+ +|++|||++++++++.+.. ++..+.++.++++. +|+||+|||
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav~ 72 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSIK 72 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEeC
Confidence 4799999999999999999999999 9999999999999887643 25677899999887 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe----cCCCCChhhhcCCC-cccc--CCCHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG----MGVSGGEEGARHGP-SLMP--GGSFEA 155 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~----~pvsgg~~~a~~G~-~i~~--gg~~~~ 155 (487)
+ ..++++++++.+.+.++++||..+++.+.. .+.+.+ ..+..++. .|+.++ .|. .++. +++++.
T Consensus 73 ~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~--~l~~~~-~~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~ 143 (247)
T 3gt0_A 73 P-DLYASIINEIKEIIKNDAIIVTIAAGKSIE--STENAF-NKKVKVVRVMPNTPALVG-----EGMSALCPNEMVTEKD 143 (247)
T ss_dssp T-TTHHHHC---CCSSCTTCEEEECSCCSCHH--HHHHHH-CSCCEEEEEECCGGGGGT-----CEEEEEEECTTCCHHH
T ss_pred H-HHHHHHHHHHHhhcCCCCEEEEecCCCCHH--HHHHHh-CCCCcEEEEeCChHHHHc-----CceEEEEeCCCCCHHH
Confidence 6 478999999999999999999766665432 333333 23444443 243332 344 3444 478999
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLTNEELQNVFT 227 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l-~~~~g~i~~~~i~~v~~ 227 (487)
++.++++|+.+|.. +++++.-.-.++-+... .-.++..+.|++.. +.+.| +|+++..+++.
T Consensus 144 ~~~~~~l~~~~G~~--------~~~~e~~~d~~~a~~g~--gpa~~~~~~eal~~a~~~~G-l~~~~a~~~~~ 205 (247)
T 3gt0_A 144 LEDVLNIFNSFGQT--------EIVSEKLMDVVTSVSGS--SPAYVYMIIEAMADAAVLDG-MPRNQAYKFAA 205 (247)
T ss_dssp HHHHHHHHGGGEEE--------EECCGGGHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCE--------EEeCHHHccHHHHHhcc--HHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 99999999999963 55544221111111111 11234455566555 67888 99999999874
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=161.92 Aligned_cols=176 Identities=16% Similarity=0.222 Sum_probs=137.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-hcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-SIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~-~l~~advIi~~vp~ 83 (487)
||+|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+++++++++ . +|+||+|||+
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~---aDvVilavp~ 72 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 72 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGTC---CSEEEECSCH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-----ccccCCHHHHhcCC---CCEEEEcCCH
Confidence 5689999999999999999999999 999999999998876654321 123567777776 6 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC----hhhhc----CCC-cccc---C
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 150 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg----~~~a~----~G~-~i~~---g 150 (487)
. .+.+++.++.+.+.++.+|++++++.+...+.+.+.+.. + +++ .|++++ +..+. .|. ++++ +
T Consensus 73 ~-~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~ 148 (281)
T 2g5c_A 73 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 148 (281)
T ss_dssp H-HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred H-HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCC
Confidence 6 678888889888999999999998886665556655543 2 665 476653 34443 566 5555 6
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHH
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDM 201 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~ 201 (487)
++++.++.++++|+.+|.+ ++++++...+.++|++.|...+...
T Consensus 149 ~~~~~~~~v~~l~~~~g~~-------~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 149 TDKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp SCHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999975 4788877778999999988765433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=159.72 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=140.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cC-C----------CCccccCCHHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EG-D----------LPLFGFRDPESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g-~----------~~~~~~~s~~e~~ 68 (487)
++||+|||+|.||.+||..|+++|++|++||+++++++.+.+.... .+ . .++..++++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 5689999999999999999999999999999999988777654100 00 0 0245677888877
Q ss_pred hhcCCCcEEEEecCCChh-HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-c
Q 011394 69 NSIQKPRVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-S 146 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~ 146 (487)
+. +|+||++||+..+ ...++.++.+.++++.++++.+++.+. .++.+.+. ++.++++...+. .+..++ .
T Consensus 84 ~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~-~~~~~ig~h~~~---p~~~~~lv 154 (283)
T 4e12_A 84 KD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTG-RGDKFLALHFAN---HVWVNNTA 154 (283)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHS-CGGGEEEEEECS---STTTSCEE
T ss_pred cc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CCcceEEEccCC---CcccCceE
Confidence 76 9999999998743 456668888889999999977666643 33444432 222333332111 112344 3
Q ss_pred ccc-C--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 147 LMP-G--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 147 i~~-g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
.++ + .+++.++.++++++.+|.. .++++..+.|. ++ |.+. ...++|++.++++.+ .+++++.
T Consensus 155 evv~~~~t~~~~~~~~~~l~~~~g~~-------~v~v~~~~~g~---i~-nr~~---~~~~~ea~~l~~~g~-~~~~~id 219 (283)
T 4e12_A 155 EVMGTTKTDPEVYQQVVEFASAIGMV-------PIELKKEKAGY---VL-NSLL---VPLLDAAAELLVDGI-ADPETID 219 (283)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTTCE-------EEECSSCCTTT---TH-HHHH---HHHHHHHHHHHHTTS-CCHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCE-------EEEEecCCCCE---Ee-hHHH---HHHHHHHHHHHHhCC-CCHHHHH
Confidence 333 3 2789999999999999976 47786666675 33 4333 346799999999887 9999999
Q ss_pred HHHH
Q 011394 224 NVFT 227 (487)
Q Consensus 224 ~v~~ 227 (487)
+++.
T Consensus 220 ~~~~ 223 (283)
T 4e12_A 220 KTWR 223 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=168.31 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=136.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHH--------HHHHhhhhcC------CCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD--------ETVERAKKEG------DLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~--------~l~~~~~~~g------~~~~~~~~s~~e~~~~l 71 (487)
.++||+|||+|.||.+||..|+++|++|++||+++++.. .+.+.+.... ..+++.+++++ .+++
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~- 130 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSN- 130 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTT-
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHcc-
Confidence 457899999999999999999999999999999998532 2222221000 00345677775 3444
Q ss_pred CCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcCCC-
Q 011394 72 QKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~G~- 145 (487)
||+||+|||+...++ .++.++.+.++++.+|++.+++.+.. ++++.+.. .|.||++ |+. ..+
T Consensus 131 --aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~L 198 (460)
T 3k6j_A 131 --CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRL 198 (460)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCE
Confidence 999999999876655 56688999999999998765555432 33333321 2555555 432 233
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 146 -SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 146 -~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.++.| .++++++.+.++++.+|+. ++++++ +.|. +.|.+.. ..++|++.++++.| ++++++
T Consensus 199 vEIv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~I 262 (460)
T 3k6j_A 199 VEIIYGSHTSSQAIATAFQACESIKKL-------PVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQI 262 (460)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHTTCE-------EEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCE-------EEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHH
Confidence 35666 3899999999999999976 478886 5554 4455443 45799999998888 999999
Q ss_pred HHHHHh
Q 011394 223 QNVFTE 228 (487)
Q Consensus 223 ~~v~~~ 228 (487)
.+++..
T Consensus 263 D~a~~~ 268 (460)
T 3k6j_A 263 DKIITN 268 (460)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=165.59 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=132.1
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh-cCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS-IQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~-l~~advIi~ 79 (487)
|.....++||||||+|.||.+||+.|.++|++|++|||++++.+.+.+.+ +..+.+++++++. .+.+|+||+
T Consensus 2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVil 74 (341)
T 3ktd_A 2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVL 74 (341)
T ss_dssp ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEE
T ss_pred CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEE
Confidence 44445678999999999999999999999999999999999888776543 4456788887653 123799999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCh-hhhc-------CCC-cccc
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGAR-------HGP-SLMP 149 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~-~~a~-------~G~-~i~~ 149 (487)
|||.. .+..+++++.+. .++.+|+|++++.+...+.+.+.+ .+.+|++ .|++|++ .+.. .|. .+++
T Consensus 75 avP~~-~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~--~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 75 AVPMT-AIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARN--MQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp CSCHH-HHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTT--CGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEEC
T ss_pred eCCHH-HHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhC--CCCcEecCCccccccccchhhhhhHHhcCCeEEEE
Confidence 99964 788999988886 789999999998866555554433 2568997 6999875 3332 343 4444
Q ss_pred CC---CHH--------HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH
Q 011394 150 GG---SFE--------AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG 195 (487)
Q Consensus 150 gg---~~~--------~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~ 195 (487)
.+ +++ .++.++++|+.+|++ ++++++...-..+.++...
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~-------v~~~~~~~HD~~~A~vshl 200 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGAE-------VVPSRVGPHDAAAARVSHL 200 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCCE-------EEEeCHHHHHHHHHHHhHH
Confidence 33 566 899999999999976 4888876666666666544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=152.44 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=136.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||+||| +|.||..++..|+++|++|+++||++++.+++.+.....-. ..+. ..+++++++. +|+||+++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~D~Vi~~~~~~- 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA---CDIAVLTIPWE- 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH---CSEEEECSCHH-
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc---CCEEEEeCChh-
Confidence 5899999 99999999999999999999999999988877654210000 0133 3577777777 99999999965
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCch------------hHHHHHHHHHHcCCeEEec--CCCCChhhh--cCCC-ccc
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYE------------NTERREKAMAELGLLYLGM--GVSGGEEGA--RHGP-SLM 148 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~------------~~~~~~~~l~~~g~~~i~~--pvsgg~~~a--~~G~-~i~ 148 (487)
.++++++++.+.+ ++.+|+|++++... ..+++.+.+. +.+++.+ |+.+..... ..+. +++
T Consensus 76 ~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 76 HAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 6788888887777 59999999986542 2455555543 4678876 665554443 4555 666
Q ss_pred cCCC-HHHHHHHHHHHHHH-hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHH
Q 011394 149 PGGS-FEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDM 201 (487)
Q Consensus 149 ~gg~-~~~~~~v~~ll~~i-g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~ 201 (487)
++|+ ++.++.++++|+.+ |.+ ++++++.+.+.++|++.|.+.+...
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~-------~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLR-------PLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEE-------EEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCC-------ceeccchhHHHHhcchHHHHHHHHH
Confidence 6665 88999999999999 875 5889999999999999998766543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-16 Score=151.28 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=161.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+|||||||+|+||.+|+..|+++|+ +|++|||++++.+++.+.. ++..+.+..++++. +|+||+|||+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEeCH
Confidence 4789999999999999999999999 9999999999999887642 35677888888887 9999999986
Q ss_pred ChhHHHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhhhcCCCc-cccC--CCHHHHHH
Q 011394 84 GAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYKY 158 (487)
Q Consensus 84 ~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~~ 158 (487)
..++++++++.+. ++++++||+.+++.+. ..+.+.+. .+..++. +|.. |.....|.+ ++++ .+++.++.
T Consensus 74 -~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~-~~~~vvr~mPn~--p~~v~~g~~~l~~~~~~~~~~~~~ 147 (280)
T 3tri_A 74 -HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLG-KASRIVRAMPNT--PSSVRAGATGLFANETVDKDQKNL 147 (280)
T ss_dssp -GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHT-CCSSEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHH
T ss_pred -HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcC-CCCeEEEEecCC--hHHhcCccEEEEeCCCCCHHHHHH
Confidence 5899999999998 8888899988777653 34444442 3344553 3421 222223443 3444 36889999
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCCc-h--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcch
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVSKG-G--SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL 235 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G~~-G--~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~ 235 (487)
++++|+.+|.. .++.++ - ....+.-..+++.+.++..+.|+ +.+.| +++++..+++...-.|.
T Consensus 148 v~~l~~~iG~~--------~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~~t~~G~-- 213 (280)
T 3tri_A 148 AESIMRAVGLV--------IWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTEQTVLGA-- 213 (280)
T ss_dssp HHHHHGGGEEE--------EECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCe--------EEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHHH--
Confidence 99999999963 555431 1 11111112245667777777777 56788 99999988874322221
Q ss_pred hhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 236 SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 236 s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
..++...+ ..|.-+.+.+ ....||-.-.++...+.|+...++.
T Consensus 214 -------a~~~~~~~-~~p~~l~~~v---~spgGtT~~~l~~le~~g~~~~~~~ 256 (280)
T 3tri_A 214 -------ARMALETE-QSVVQLRQFV---TSPGGTTEQAIKVLESGNLRELFIK 256 (280)
T ss_dssp -------HHHHHTCS-SCHHHHHHHH---CCTTSHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHHHhcC-CCHHHHHHhc---cCCChHHHHHHHHHHHCChHHHHHH
Confidence 12222211 2233233333 2334566556666677788755443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=171.36 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=138.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~~ 69 (487)
++||||||+|.||.+||.+|+++|++|++||+++++++.+.+... ..|.. +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 568999999999999999999999999999999999887764210 00000 2445667754 45
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEE-ecCCCCchhHHHHHHHHH----HcCCeEEe-cCCCCChhhhc
Q 011394 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCII-DGGNEWYENTERREKAMA----ELGLLYLG-MGVSGGEEGAR 142 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~----~~g~~~i~-~pvsgg~~~a~ 142 (487)
+ +|+||+|||+..+++ .++.++.+.++++.+|+ ++|+..+. ++++.+. -.|.||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC-------
Confidence 4 999999999986664 67788988899999985 46665432 2333221 12566665 3443
Q ss_pred CCC-ccccCC---CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011394 143 HGP-SLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (487)
Q Consensus 143 ~G~-~i~~gg---~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~ 218 (487)
+ ..+++| ++++++.+.++++.+|+. ++++++. .| +++||.+.. .++|++.++++.+ .|
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~ 212 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWGKQ-------PVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AA 212 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SC
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhCCE-------EEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CC
Confidence 3 445555 899999999999999976 4788763 24 566665433 6799999999988 99
Q ss_pred HHHHHHHHH
Q 011394 219 NEELQNVFT 227 (487)
Q Consensus 219 ~~~i~~v~~ 227 (487)
++++.+++.
T Consensus 213 ~~~id~a~~ 221 (483)
T 3mog_A 213 PEVIDAALR 221 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=159.04 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=132.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|||+|||+|.||..+|.+|+++| ++|++|||++++ . ++..+.+++++++. +|+||+||
T Consensus 3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~v 66 (262)
T 2rcy_A 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCAV 66 (262)
T ss_dssp SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEECS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEEe
Confidence 4579999999999999999999999 799999999876 1 25567788888887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCE-EEecCCCCchhHHHHHHHHHHc--CCeEE-ecCCCCChhhhcCCCccccCC---CHH
Q 011394 82 KAGAPVDETIKTLSAYMEKGDC-IIDGGNEWYENTERREKAMAEL--GLLYL-GMGVSGGEEGARHGPSLMPGG---SFE 154 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~--g~~~i-~~pvsgg~~~a~~G~~i~~gg---~~~ 154 (487)
|+ .++++++.++.+.+ ++.+ |.++++..+. .+.+.+... .++++ +.|+.++ .|.++++++ +++
T Consensus 67 ~~-~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~ 136 (262)
T 2rcy_A 67 KP-DIAGSVLNNIKPYL-SSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVG-----EGSFIYCSNKNVNST 136 (262)
T ss_dssp CT-TTHHHHHHHSGGGC-TTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGT-----CEEEEEEECTTCCHH
T ss_pred CH-HHHHHHHHHHHHhc-CCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHc-----CCeEEEEeCCCCCHH
Confidence 96 48999999998888 4554 4455555442 233333221 13343 2233322 455444444 788
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMI--HNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v--~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
.++.++++|+.+|. ++++++......+++. .|.+.+.++..+.|+ +.+.| +++++..+++.
T Consensus 137 ~~~~~~~ll~~~G~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~ 199 (262)
T 2rcy_A 137 DKKYVNDIFNSCGI--------IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHHHHTSEE--------EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--------EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999985 3788876555556553 466666777666666 57788 99988888764
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=166.72 Aligned_cols=277 Identities=15% Similarity=0.113 Sum_probs=161.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc--C-C----CCc-cccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE--G-D----LPL-FGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--g-~----~~~-~~~~s~~e~~~~l~~advIi 78 (487)
+|||+|||+|.||..+|..|+++|++|++|||++++++.+.+.+... + . .++ ..+++++++++. +|+||
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVIL 80 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEEE
Confidence 47999999999999999999999999999999999998887653100 0 0 011 245688887766 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcC---CeEEe---cCCCCChhh---hc----CCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG---LLYLG---MGVSGGEEG---AR----HGP 145 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g---~~~i~---~pvsgg~~~---a~----~G~ 145 (487)
+|+|+. ..+++++++.+.+.++++||++.+..+ .+.++.+.+.+.+ +.|++ .|+++...+ +. .+.
T Consensus 81 ~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 81 IVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred EeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 999987 578899999999999999999855333 3344555566554 45655 455443221 11 011
Q ss_pred ccc---c-CCCHHHHHHHHHHHHHHhccCCCCC-----C---eEEEeCCc--hhhHHHH---hH------HHHHHHHHHH
Q 011394 146 SLM---P-GGSFEAYKYIEDILLKVAAQVPDSG-----P---CVTYVSKG--GSGNFVK---MI------HNGIEYGDMQ 202 (487)
Q Consensus 146 ~i~---~-gg~~~~~~~v~~ll~~ig~~~~~~~-----~---~~~~~G~~--G~g~~~K---~v------~N~~~~~~~~ 202 (487)
..+ . +++++.++.++++|..+... ... . ++++.+.. +.+...| +. .+.......+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYVAV--ENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEEEC--SCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcEEc--CChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 111 1 34555677777777544210 000 0 01111110 3333222 11 2334567888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchh-hhHhhhccccccccCCCCchhHH--hhhhccCCCCchHHHHHHHH
Q 011394 203 LIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLS-FLIEITADIFGIKDDKGDGYLVD--KVLDKTGMKGTGKWTVQQAA 279 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s-~~~~~~~~~l~~~~~~~~~~~l~--~i~~~~~~kgtg~~~~~~a~ 279 (487)
++.|++.++++.| ++++++.+.+.........+ +.......++. |...+ ..++ .+.+|+. -+.| ..++.|+
T Consensus 237 ~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~--d~~~~-~e~~~~~~~~D~~-~~~g-~~~~~a~ 310 (359)
T 1bg6_A 237 VDAERIAIAKAFD-LNVPSVCEWYKESYGQSPATIYEAVQGNPAYR--GIAGP-INLNTRYFFEDVS-TGLV-PLSELGR 310 (359)
T ss_dssp HHHHHHHHHHTTT-CCCCCHHHHC-------CCSHHHHHHTCGGGT--TCBCC-SSSCCHHHHHHHH-TTHH-HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCcccHHHHHhcchhhc--CCCCC-CCCCccceecCcC-ccHH-HHHHHHH
Confidence 9999999999999 99876666553211111010 00000112211 11111 1223 4444431 0123 6889999
Q ss_pred HcCCCchhHHHHHHHHHh
Q 011394 280 DLSVAAPTIASSLDARFL 297 (487)
Q Consensus 280 ~~gv~~P~~~~a~~~r~~ 297 (487)
++|+|+|+.... ...+.
T Consensus 311 ~~gv~~P~~~~l-~~~~~ 327 (359)
T 1bg6_A 311 AVNVPTPLIDAV-LDLIS 327 (359)
T ss_dssp HTTCCCHHHHHH-HHHHH
T ss_pred HcCCCchHHHHH-HHHHH
Confidence 999999998764 44443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=156.26 Aligned_cols=193 Identities=13% Similarity=0.198 Sum_probs=135.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC---------------CCccccCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD---------------LPLFGFRD 63 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~---------------~~~~~~~s 63 (487)
.|+||+|||+|.||.+||..|+++|++|++||+++++++.+.+... ..|. .+++.+++
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 93 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 93 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence 3578999999999999999999999999999999998876532110 0000 02455678
Q ss_pred HHHHHhhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEecCCCCCh
Q 011394 64 PESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLGMGVSGGE 138 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~pvsgg~ 138 (487)
+++.+++ +|+||+|||+..++ +.++.++.+.+.++.+|++.+++.+.. ++.+.+. -.|.||++ |+.
T Consensus 94 ~~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~~--- 164 (302)
T 1f0y_A 94 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PVP--- 164 (302)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-STT---
T ss_pred HHHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Ccc---
Confidence 8777666 99999999987554 466688888888899988766555432 3333221 11344443 221
Q ss_pred hhhcCCC--ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011394 139 EGARHGP--SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 139 ~~a~~G~--~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~ 214 (487)
.++ .++.| .+++.++.+.++++.+|.. ++++++. .| ++++|.+ ..+++|++.++++.
T Consensus 165 ----~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~-------~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g 225 (302)
T 1f0y_A 165 ----VMKLVEVIKTPMTSQKTFESLVDFSKALGKH-------PVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERG 225 (302)
T ss_dssp ----TCCEEEEECCTTCCHHHHHHHHHHHHHTTCE-------EEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTT
T ss_pred ----cCceEEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcC
Confidence 233 34544 3899999999999999965 4777652 33 3455443 35689999999998
Q ss_pred CCCCHHHHHHHHH
Q 011394 215 GKLTNEELQNVFT 227 (487)
Q Consensus 215 g~i~~~~i~~v~~ 227 (487)
+ ++++++..++.
T Consensus 226 ~-~~~~~id~~~~ 237 (302)
T 1f0y_A 226 D-ASKEDIDTAMK 237 (302)
T ss_dssp S-SCHHHHHHHHH
T ss_pred C-CCHHHHHHHHH
Confidence 8 99999988873
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=153.18 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=133.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.+. ....+.+++++ .. +|+||+|+|+. .+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~-~~---~D~vi~av~~~-~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-----VDEAGQDLSLL-QT---AKIIFLCTPIQ-LI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGG-TT---CSEEEECSCHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCC-----CccccCCHHHh-CC---CCEEEEECCHH-HH
Confidence 58999999999999999999999999999999999888765332 11245677777 65 99999999975 78
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCC----hhhhc----CCC-cccc---CCCHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGG----EEGAR----HGP-SLMP---GGSFE 154 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg----~~~a~----~G~-~i~~---gg~~~ 154 (487)
.++++++.+.+.++.+|+++++..+...+.+.+.+ .++++. |++|+ +..+. .|. +++. +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~----~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW----SGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS----TTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHh----CCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 89999999999999999999887765544333322 256665 77754 33222 344 3332 35889
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea 207 (487)
..+.++++|+.+|.+ ++++++......+|++.|.-.+... .+.++
T Consensus 147 ~~~~v~~l~~~~g~~-------~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~ 191 (279)
T 2f1k_A 147 QLACLRSVLEPLGVK-------IYLCTPADHDQAVAWISHLPVMVSA-ALIQA 191 (279)
T ss_dssp HHHHHHHHHGGGTCE-------EEECCHHHHHHHHHHHTHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH
Confidence 999999999999965 4788888889999999997554444 33444
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=155.82 Aligned_cols=160 Identities=24% Similarity=0.297 Sum_probs=122.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+|||||||+|.||..+|..|.++ |++|++|||++++.+.+.+.+.. ...+.+++++++. +|+||+|||+.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 77 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV-----DEATADFKVFAAL---ADVIILAVPIK 77 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC-----SEEESCTTTTGGG---CSEEEECSCHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc-----ccccCCHHHhhcC---CCEEEEcCCHH
Confidence 57999999999999999999988 68999999999998887654320 1345677777776 99999999986
Q ss_pred hhHHHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCC----Chhhhc----CCC-ccc---cC
Q 011394 85 APVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSG----GEEGAR----HGP-SLM---PG 150 (487)
Q Consensus 85 ~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsg----g~~~a~----~G~-~i~---~g 150 (487)
.++++++++.+. +.++.+|+|++++.+..++.+.+.+..++++|++ .|++| ++..+. .|. .++ .+
T Consensus 78 -~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~ 156 (290)
T 3b1f_A 78 -KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCL 156 (290)
T ss_dssp -HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTT
T ss_pred -HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCC
Confidence 568899999888 8999999999988776665665555444788887 58876 443333 455 332 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCC
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK 182 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~ 182 (487)
++++.++.++++|+.+|.+ ++++++
T Consensus 157 ~~~~~~~~v~~l~~~~G~~-------~~~~~~ 181 (290)
T 3b1f_A 157 TKPNTIPALQDLLSGLHAR-------YVEIDA 181 (290)
T ss_dssp CCTTHHHHHHHHTGGGCCE-------EEECCH
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCH
Confidence 7888999999999999975 466664
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-18 Score=158.04 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=114.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.|+|+|||+|.||..+|.+|.+.|++|++|||+++ .+.+...+ +... +++++++. +|+||++||+. +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g-------~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRG-------AEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 44444322 3334 67777766 99999999985 6
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC--------------hhhhcCCC--ccccC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG--------------EEGARHGP--SLMPG 150 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg--------------~~~a~~G~--~i~~g 150 (487)
++.++ ++.+ +.++++|||++++.+... +...+..+++.++.++ ..+...|. .+++|
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g 157 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCG 157 (201)
Confidence 77776 4544 347899999999986422 1111222222222221 11222222 57788
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhH
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMI 192 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v 192 (487)
++++.++.++++|+.+|.+ ++++|+.|.|..+|.+
T Consensus 158 ~~~~~~~~v~~ll~~~G~~-------~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 158 NDSKAKDRVMDIARTLGLT-------PLDQGSLVAAKEIENY 192 (201)
Confidence 8999999999999999987 4899999999998865
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-17 Score=151.61 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=117.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||+|||+|+||..+|..|+++|++|++ |||++++++++.+... +....+..+.++. +|+||+++|+.
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~~ 92 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPYD 92 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCGG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCChH
Confidence 468999999999999999999999999999 9999999988876532 2334455555665 99999999964
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCc------h------hHHHHHHHHHHcCCeEE------ecCCCC-ChhhhcCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWY------E------NTERREKAMAELGLLYL------GMGVSG-GEEGARHGP 145 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~------~------~~~~~~~~l~~~g~~~i------~~pvsg-g~~~a~~G~ 145 (487)
.+.+++.++.+ + ++++||++++..+ . ..+.+.+.+. +..++ .+++.. ++. ...++
T Consensus 93 -~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~~v~~~g~~-~~~~~ 166 (220)
T 4huj_A 93 -SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP--GAKVVKAFNTLPAAVLAADPD-KGTGS 166 (220)
T ss_dssp -GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST--TCEEEEESCSSCHHHHTSCSB-CSSCE
T ss_pred -HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC--CCCEEECCCCCCHHHhhhCcc-cCCCC
Confidence 78888888776 4 6899999998773 1 3444555443 23333 223332 222 12233
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHH
Q 011394 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188 (487)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~ 188 (487)
.++.|.++++.+.++++|+.+|.. ++++|+.+.|..
T Consensus 167 ~~v~~~g~~~~~~~~v~~l~~~~G~~-------~~~~G~l~~a~~ 204 (220)
T 4huj_A 167 RVLFLSGNHSDANRQVAELISSLGFA-------PVDLGTLAASGP 204 (220)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCE-------EEECCSHHHHHH
T ss_pred eeEEEeCCCHHHHHHHHHHHHHhCCC-------eEeeCChhhcch
Confidence 345567889999999999999976 589999777754
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=150.53 Aligned_cols=249 Identities=14% Similarity=0.185 Sum_probs=160.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC--C----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG--D----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g--~----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
.+|||+|||+|.||..+|..|+++|++|++| +++++++.+.+.+.... + .++..++++++ +.. +|+||+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vil 92 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLF 92 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEE
Confidence 3579999999999999999999999999999 99999988877542110 0 02334456654 344 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc---CCeEEecCCCCChhhhcC-CC-ccccCCCHH
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL---GLLYLGMGVSGGEEGARH-GP-SLMPGGSFE 154 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~---g~~~i~~pvsgg~~~a~~-G~-~i~~gg~~~ 154 (487)
+||+. +++++++.+.+.+.++++||.++++.... +.+.+.+..+ ++.+..+-.+| |..+.+ +. .+.+|. .+
T Consensus 93 avk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~g-P~~~~~~~~g~~~ig~-~~ 168 (318)
T 3hwr_A 93 CVKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAG-PGHVRHHGRGELVIEP-TS 168 (318)
T ss_dssp CCCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEECC-CT
T ss_pred Ecccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcC-CeEEEEcCCceEEEcC-CH
Confidence 99986 89999999999999999999999987442 2344433200 11111121221 111211 22 233444 34
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~---------------------~~~~~~~~~Ea~~l~~~ 213 (487)
..+.+.++|..-+.+ +....+.-...+.|++-|.. ...+..++.|+..++++
T Consensus 169 ~~~~l~~~l~~~~~~-------~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a 241 (318)
T 3hwr_A 169 HGANLAAIFAAAGVP-------VETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARA 241 (318)
T ss_dssp TTHHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-------cEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHH
Confidence 557788888876654 34445577788899887743 23456788999999999
Q ss_pred hCCCCHH-----HHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhH
Q 011394 214 VGKLTNE-----ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (487)
Q Consensus 214 ~g~i~~~-----~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~ 288 (487)
.| ++.+ .+.+++... . ....++..++...+. ..+|.+.. +.++.|+++|+|+|+.
T Consensus 242 ~G-~~l~~~~~~~~~~~~~~~--~---~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~ 301 (318)
T 3hwr_A 242 EG-VKLPDDVALAIRRIAETM--P---RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPAN 301 (318)
T ss_dssp TT-CCCCTTHHHHHHHHHHHS--T---TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHH
T ss_pred cC-CCCChHHHHHHHHHHHhc--C---CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHH
Confidence 98 7732 222222211 1 112233334433321 25666654 5789999999999997
Q ss_pred HH
Q 011394 289 AS 290 (487)
Q Consensus 289 ~~ 290 (487)
..
T Consensus 302 ~~ 303 (318)
T 3hwr_A 302 RV 303 (318)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-17 Score=157.56 Aligned_cols=183 Identities=9% Similarity=0.057 Sum_probs=123.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||||||||+|.||..|+..|+++ ++| .+|||++++.+++.+.. +. .+.++++++++ +|+||+|||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 47999999999999999999998 999 59999999988876543 13 45667766655 99999999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhc--CCCccccCCCHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGAR--HGPSLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~--~G~~i~~gg~~~~~~~v~~ll 163 (487)
.+.+++.++. .++++||++|++.+....+.. ..+..+..+++++++.... .+..++++++++.++.++++|
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5777776654 578999999987765432211 1111223446666554433 333566777888899999999
Q ss_pred HHHhccCCCCCCeEEEeCCchh---hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 164 LKVAAQVPDSGPCVTYVSKGGS---GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G~~G~---g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
+.+|.+ ++++++.+. ....+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG~~-------~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEISGK-------YFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHCSC-------EEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhCCC-------EEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 999965 588876442 233467777543 35677778888888 9987
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-16 Score=154.02 Aligned_cols=249 Identities=20% Similarity=0.251 Sum_probs=156.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc---C---CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE---G---DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---g---~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+|||+|||+|.||..+|..|+++|++|++|+|+ ++.+.+.+.+... + ..++..+++++++ .. +|+||+|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEEEe
Confidence 579999999999999999999999999999996 6677766543210 0 0012345677664 44 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCCc------------------hhHHHHHHHHHHcCCeEEe------cCCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY------------------ENTERREKAMAELGLLYLG------MGVSG 136 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------------------~~~~~~~~~l~~~g~~~i~------~pvsg 136 (487)
||+. +++++++.+.+.+.++++||.+.|+.+ ...+.+.+.+... +++. +-..+
T Consensus 78 vk~~-~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 78 VKAP-ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTR--HVLGCVVHLTCATVS 154 (335)
T ss_dssp CCHH-HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGG--GEEEEEECCCEEESS
T ss_pred CCch-hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcc--cEEEEEEEEEEEEcC
Confidence 9985 789999999999999999999999853 1112333333221 2222 11111
Q ss_pred Chhhhc-CCC-ccccC----CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------
Q 011394 137 GEEGAR-HGP-SLMPG----GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG--------------- 195 (487)
Q Consensus 137 g~~~a~-~G~-~i~~g----g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~--------------- 195 (487)
+..+. .+. .+..| .+.+..+.+.++|+.-+.+ +....+.-...+.|++.|+
T Consensus 155 -pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~ 226 (335)
T 3ghy_A 155 -PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQ-------AECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDR 226 (335)
T ss_dssp -TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCE-------EEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHH
T ss_pred -CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCC-------cEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHH
Confidence 11111 222 23333 3456778888888887654 3444455666677765442
Q ss_pred ------HHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhcc
Q 011394 196 ------IEYGDMQLIAEAYDVLKSVGKLTNE----ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 265 (487)
Q Consensus 196 ------~~~~~~~~~~Ea~~l~~~~g~i~~~----~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 265 (487)
....+..++.|+..++++.| ++++ ++.++++.. +. ...++..++...+. ...+|.+..
T Consensus 227 ~~~~~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~--~~---~~sSM~qD~~~gr~----~tEid~i~G-- 294 (335)
T 3ghy_A 227 ILDDPLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTRQL--GA---FKTSMLQDAEAGRG----PLEIDALVA-- 294 (335)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHHTT--CS---CCCTTTC-----CC----CCCHHHHTH--
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHhcc--CC---CCcHHHHHHHcCCC----CchHHHHhh--
Confidence 34567789999999999998 7642 233332211 11 11123334333220 135777765
Q ss_pred CCCCchHHHHHHHHHcCCCchhHHH
Q 011394 266 GMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 266 ~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
..++.|+++|+|+|+...
T Consensus 295 -------~vv~~a~~~gv~~P~~~~ 312 (335)
T 3ghy_A 295 -------SVREIGLHVGVPTPQIDT 312 (335)
T ss_dssp -------HHHHHHHHHTCCCHHHHH
T ss_pred -------HHHHHHHHhCCCCCHHHH
Confidence 578999999999999765
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=147.16 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=134.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+++|+||| +|.||.++|..|++.|++|++|||+++. ++.++++. +|+||+|||..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~- 76 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN- 76 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG-
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH-
Confidence 45899999 9999999999999999999999998642 24455565 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcCCC-cccc-CCCHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMP-GGSFEAYKYIEDI 162 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~G~-~i~~-gg~~~~~~~v~~l 162 (487)
.+.++++++.+.+.++.+|+|++++.....+.+.+. .+.+|++. |++|.+.....|. ++++ +.+++.++.++++
T Consensus 77 ~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l 153 (298)
T 2pv7_A 77 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQ 153 (298)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHH
Confidence 699999999999999999999988875544443332 34678865 8888765555676 4443 4478889999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
|+.+|.+ ++++++......++++.+.-.+.... +.+++ .+.| ++.++...+
T Consensus 154 ~~~~G~~-------~~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g-~~~~~~~~l 204 (298)
T 2pv7_A 154 IQIWGAK-------IYQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQP-INLANLLAL 204 (298)
T ss_dssp HHHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSS-CCHHHHHHT
T ss_pred HHHcCCE-------EEECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcC-CCHHHHHhh
Confidence 9999975 47777766677788887765443332 33332 2356 887765543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=167.39 Aligned_cols=190 Identities=14% Similarity=0.206 Sum_probs=133.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~~~~~~s~~e~~ 68 (487)
.++||||||+|.||.+||.+|+++||+|++||+++++++...... ...|.. +++.++++ +.+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 357899999999999999999999999999999999877642210 000000 13456666 445
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcC
Q 011394 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~ 143 (487)
++ ||+||+|||++.+++ .++.++.+.++++.+|++.+++.+.. ++++.+.. .|.||++ |+. .
T Consensus 392 ~~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~-------~ 458 (715)
T 1wdk_A 392 GN---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVH-------M 458 (715)
T ss_dssp GG---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STT-------T
T ss_pred CC---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Ccc-------c
Confidence 55 999999999886665 45678888899999998766555433 23332211 2455554 332 2
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 144 GP--SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 144 G~--~i~~gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
++ .++.|. ++++++.+.++++.+|+. ++++++. .|. +.|.+.. ..++|++.++++ | +|+
T Consensus 459 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~ 521 (715)
T 1wdk_A 459 MPLVEVIRGEKSSDLAVATTVAYAKKMGKN-------PIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDF 521 (715)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCE-------eEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCH
Confidence 33 345554 899999999999999975 4788763 444 3444433 467999999986 7 999
Q ss_pred HHHHHHH
Q 011394 220 EELQNVF 226 (487)
Q Consensus 220 ~~i~~v~ 226 (487)
+++.+++
T Consensus 522 ~~id~~~ 528 (715)
T 1wdk_A 522 VRIDKVM 528 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=165.39 Aligned_cols=191 Identities=14% Similarity=0.185 Sum_probs=135.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcC----------CCCccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEG----------DLPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g----------~~~~~~~~s~~e~~ 68 (487)
.++||||||+|.||.+||.+|+++||+|++||+++++++...+.. ...| ..+++.+++++ .+
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~ 389 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SF 389 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GG
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HH
Confidence 467899999999999999999999999999999999887653310 0000 00245566663 34
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcC
Q 011394 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~ 143 (487)
++ ||+||+|||+...++ .++.++.+.++++.+|++.+++.+.+ ++++.+.. .|.||++ |+..
T Consensus 390 ~~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~~------- 456 (725)
T 2wtb_A 390 RD---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAHI------- 456 (725)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STTT-------
T ss_pred CC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Cccc-------
Confidence 44 999999999886654 55678888899999987766555443 23332211 2566665 4322
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 144 GP--SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 144 G~--~i~~gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
++ .++.|. ++++++.+.++++.+|+. ++++++. .|. +.|.+.. ..++|++.++++ | +|+
T Consensus 457 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~ 519 (725)
T 2wtb_A 457 MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT-------PVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADP 519 (725)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCE-------EEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCH
Confidence 33 345553 899999999999999975 4788863 444 3454443 457999999987 7 999
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
+++.+++.
T Consensus 520 e~id~~~~ 527 (725)
T 2wtb_A 520 YLIDRAIS 527 (725)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999873
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=156.10 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=133.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-----------hhhcC----CCCccccCCHHHHHhhc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----------AKKEG----DLPLFGFRDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g----~~~~~~~~s~~e~~~~l 71 (487)
+++|+|||+|.||.+||..|+++|++|++||+++++++...+. +.... ......+++++ .+++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~- 114 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST- 114 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC-
Confidence 5689999999999999999999999999999999887765432 11000 00123355663 3444
Q ss_pred CCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcCCC-
Q 011394 72 QKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 72 ~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~G~- 145 (487)
+|+||+|||....+ ..++.++.+.++++.+|++ +|+.+..+ ++++.+.. .|.||+ .|+. .++
T Consensus 115 --aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~~l 182 (463)
T 1zcj_A 115 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VMRL 182 (463)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TCCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc-------ccee
Confidence 99999999987544 4566888888889999987 45444443 45443321 256665 4543 233
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 146 -SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 146 -~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.++.| +++++++.+.++++.+|+. ++++++ ..|. +.|.+... .++|++.++++ | ++++++
T Consensus 183 vevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~i 245 (463)
T 1zcj_A 183 LEVIPSRYSSPTTIATVMSLSKKIGKI-------GVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPEDV 245 (463)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCE-------EEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHHH
Confidence 34554 6899999999999999965 478875 3444 44554444 35999999876 7 999999
Q ss_pred HHHHH
Q 011394 223 QNVFT 227 (487)
Q Consensus 223 ~~v~~ 227 (487)
.+++.
T Consensus 246 d~~~~ 250 (463)
T 1zcj_A 246 DGVLE 250 (463)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=143.32 Aligned_cols=253 Identities=13% Similarity=0.150 Sum_probs=155.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+... +.. ++..++++++ +.. +|+||+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVLV 75 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEEE
Confidence 3799999999999999999999999999999986 36665543210 000 1223455655 344 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccC----
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPG---- 150 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~g---- 150 (487)
+||+. +++++++.+.+.+.++++||.+.|+... .+.+.+.+... ++.++.+-..+.......++ .+..|
T Consensus 76 avk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 76 GLKTF-ANSRYEELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp CCCGG-GGGGHHHHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred ecCCC-CcHHHHHHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 99986 7889999999999999999999998732 23344444322 22223332222111111222 23333
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHH---------------------HHHHHHHHHHHHH
Q 011394 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAYD 209 (487)
Q Consensus 151 g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~---------------------~~~~~~~~~Ea~~ 209 (487)
.+.+..+.+.++|+.-+.+ +....+.-...+-|++-|.. ...+..++.|+..
T Consensus 154 ~~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~ 226 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVD-------CRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA 226 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCC-------cEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence 3456778888888887654 24444566667777766643 3445678889999
Q ss_pred HHHHhC---CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCch
Q 011394 210 VLKSVG---KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (487)
Q Consensus 210 l~~~~g---~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P 286 (487)
++++.| .++.+.+..++....... ....++..++...+. ..+|.+.. +.++.|+++|+|+|
T Consensus 227 va~a~G~~~~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P 290 (312)
T 3hn2_A 227 GANAQGLATFIADGYVDDMLEFTDAMG--EYKPSMEIDREEGRP-----LEIAAIFR---------TPLAYGAREGIAMP 290 (312)
T ss_dssp HHHTSCCSSCCCTTHHHHHHHHHTTSC--SCCCHHHHHHHTTCC-----CCHHHHTH---------HHHHHHHHTTCCCH
T ss_pred HHHHcCCccCCCHHHHHHHHHHHhcCC--CCCchHHHHHHhCCC-----ccHHHHhh---------HHHHHHHHhCCCCC
Confidence 988876 233332333332222111 111233334433321 35677654 57899999999999
Q ss_pred hHHH
Q 011394 287 TIAS 290 (487)
Q Consensus 287 ~~~~ 290 (487)
+...
T Consensus 291 ~~~~ 294 (312)
T 3hn2_A 291 RVEM 294 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=147.64 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=160.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCCC---CccccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGDL---PLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~~---~~~~~~s~~e~~~~l~~advIi 78 (487)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+.. .+.. ++..+++++++.+. +|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEEE
Confidence 3799999999999999999999999999999987 3566554310 0100 12345666666534 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh------hhhcCCC-cccc--
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE------EGARHGP-SLMP-- 149 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~------~~a~~G~-~i~~-- 149 (487)
++||.. +++++++.+.+.+.++++||.+.++.... +.+.+.+... .++.+++..+. .-...++ .+.+
T Consensus 77 lavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 77 LCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp ECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 999987 67889999999999999999998886422 2344444322 34444433211 1111223 3333
Q ss_pred --CCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHH--------------------HHHHHHHHHHH
Q 011394 150 --GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI--------------------EYGDMQLIAEA 207 (487)
Q Consensus 150 --gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~--------------------~~~~~~~~~Ea 207 (487)
+.+.+..+.+.++|+.-+.+ +.+..+.-...+.|++-|.. ...+..++.|+
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~ 225 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAGID-------GIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEI 225 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTTSC-------EEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCCC-------ceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHH
Confidence 34566778888888887654 35555677778888877632 23456789999
Q ss_pred HHHHHHhCCCCHH-H-HHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCc
Q 011394 208 YDVLKSVGKLTNE-E-LQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 285 (487)
Q Consensus 208 ~~l~~~~g~i~~~-~-i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~ 285 (487)
..++++.| ++.+ + +..++....... ....++..++...+. ..+|.+.. ..++.|+++|+|+
T Consensus 226 ~~va~a~G-~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~ 288 (320)
T 3i83_A 226 RAVAAANG-HPLPEDIVEKNVASTYKMP--PYKTSMLVDFEAGQP-----METEVILG---------NAVRAGRRTRVAI 288 (320)
T ss_dssp HHHHHHTT-CCCCTTHHHHHHHHHHHSC--CCCCHHHHHHHHTCC-----CCHHHHTH---------HHHHHHHHTTCCC
T ss_pred HHHHHHcC-CCCChHHHHHHHHHHhcCC--CCCCcHHHHHHhCCC-----chHHHHcc---------HHHHHHHHhCCCC
Confidence 99999998 7732 1 222222111111 011123334433221 35677654 5789999999999
Q ss_pred hhHHH
Q 011394 286 PTIAS 290 (487)
Q Consensus 286 P~~~~ 290 (487)
|+...
T Consensus 289 P~~~~ 293 (320)
T 3i83_A 289 PHLES 293 (320)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 99765
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=145.47 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=136.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC----CC-------CccccCCHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG----DL-------PLFGFRDPESF 67 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g----~~-------~~~~~~s~~e~ 67 (487)
...||+|||+|.||..+|..++.+|++|++||++++.++...+... ..+ .. ++..++++++.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 3468999999999999999999999999999999987654432211 100 00 34566778877
Q ss_pred HhhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCChhhh
Q 011394 68 VNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGA 141 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-vsgg~~~a 141 (487)
++. +|+|+.+||..-.++ +++.+|.+..+++.|+-..|++.+.+ ++++.+... |.||+..| ++.-.
T Consensus 85 ~~~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~LV--- 156 (319)
T 3ado_A 85 VEG---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPLV--- 156 (319)
T ss_dssp TTT---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCEE---
T ss_pred hcc---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccchH---
Confidence 776 999999999988777 45578888888887776665555433 344333221 56776554 22111
Q ss_pred cCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 142 RHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 142 ~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
-++.| .++++++.+..+++.+|+++ +.+-....|+ +.|.+. ...+.|++.+.+..+ .++
T Consensus 157 ----Eiv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~kd~pGF----i~NRl~---~~~~~EA~~lv~eGv-as~ 217 (319)
T 3ado_A 157 ----ELVPHPETSPATVDRTHALMRKIGQSP-------VRVLKEIDGF----VLNRLQ---YAIISEAWRLVEEGI-VSP 217 (319)
T ss_dssp ----EEEECTTCCHHHHHHHHHHHHHTTCEE-------EECSSCCTTT----THHHHH---HHHHHHHHHHHHTTS-SCH
T ss_pred ----HhcCCCCCcHHHHHHHHHHHHHhCCcc-------CCcCCCCCCE----eHHHHH---HHHHHHHHHHHHhCC-CCH
Confidence 14444 38899999999999999763 4443345554 456654 455599999999887 999
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
++++.++.
T Consensus 218 edID~~~~ 225 (319)
T 3ado_A 218 SDLDLVMS 225 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999873
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=144.06 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=112.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|+|+|||+|.||..+|..|+++|++|++|||+++ .++ ++|+||+++| +.
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------------------~~~---~aD~vi~av~-~~ 68 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------------------ATT---LGEIVIMAVP-YP 68 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------------------CSS---CCSEEEECSC-HH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------Hhc---cCCEEEEcCC-cH
Confidence 357999999999999999999999999999999855 012 3899999999 45
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCc-h--------h----HHHHHHHHHHcCCeEEec-CCCCChhhhc---CC--C-
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWY-E--------N----TERREKAMAELGLLYLGM-GVSGGEEGAR---HG--P- 145 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~-~--------~----~~~~~~~l~~~g~~~i~~-pvsgg~~~a~---~G--~- 145 (487)
+++++++++.+.++ +++||+++++.+ . . ++.+.+.+. +.+++.+ ....++..+. .+ +
T Consensus 69 ~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~ 145 (209)
T 2raf_A 69 ALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPT 145 (209)
T ss_dssp HHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEEC
T ss_pred HHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCc
Confidence 78899998888887 999999999654 1 1 334444332 5677762 2222222221 23 3
Q ss_pred ccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHH
Q 011394 146 SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI 196 (487)
Q Consensus 146 ~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~ 196 (487)
.++++| +++..+.++++|+.++.+ ++++++.+.+..+|++.|.+
T Consensus 146 ~~~~~g~~~~~~~~v~~ll~~~G~~-------~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 146 TVLVAGNDDSAKQRFTRALADSPLE-------VKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEEESCHHHHHHHHHHTTTSSCE-------EEEEESGGGHHHHHHHHHHH
T ss_pred eeEEcCCCHHHHHHHHHHHHHcCCc-------eEeCCCHhHHHHhcchHHHH
Confidence 445555 568899999999999865 58899999999999998774
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.1e-16 Score=145.63 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=117.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|+|+|||+|.||..++..|++.|++|++|||++++.+.+.+.+ +... +.+++++. +|+||+++|+.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~~- 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFRE- 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCGG-
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCChH-
Confidence 467999999999999999999999999999999999887765432 3333 67777665 99999999964
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHH----HHHHHHH--cCCeEEec--CCCCCh--hhhcCCC--ccccCCCH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTER----REKAMAE--LGLLYLGM--GVSGGE--EGARHGP--SLMPGGSF 153 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~----~~~~l~~--~g~~~i~~--pvsgg~--~~a~~G~--~i~~gg~~ 153 (487)
.++.+++ +.+.+ ++++|||++++.+..+.+ ..+.+.+ .+.+++.+ ++++.. .+...|. .++.|+++
T Consensus 95 ~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~ 172 (215)
T 2vns_A 95 HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQP 172 (215)
T ss_dssp GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCH
T ss_pred HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCH
Confidence 5666664 55555 899999999998654321 1122222 12233321 221111 1122344 56778899
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHH
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIH 193 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~ 193 (487)
+.++.++++|+.+|.+ ++++|+.|+|+.++...
T Consensus 173 ~~~~~v~~ll~~~G~~-------~~~~g~~~~~~~~e~~~ 205 (215)
T 2vns_A 173 EAKRAVSEMALAMGFM-------PVDMGSLASAWEVEAMP 205 (215)
T ss_dssp HHHHHHHHHHHHTTCE-------EEECCSGGGHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCc-------eEeecchhhhhHhhhhh
Confidence 9999999999999976 58999999999877543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-14 Score=131.06 Aligned_cols=156 Identities=10% Similarity=0.110 Sum_probs=115.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..|||+|||+|.||.+||++|.++||+|++||+.. + ++. +| |+|||+.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~- 52 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH- 52 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-
Confidence 45799999999999999999999999999999830 1 233 89 9999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhhhcCCCccccCCCHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (487)
++.+++.++.+.+.+|++|+|+|++.+... .+.+..+|..|++ .|++|.. .++.++++++++.++++++
T Consensus 53 ai~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~ 122 (232)
T 3dfu_A 53 GVEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVG 122 (232)
T ss_dssp CHHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHH
Confidence 899999999999999999999876654433 3334467899995 6886542 3445568889999999999
Q ss_pred HHhccCCCCCCeEEEeCCchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Q 011394 165 KVAAQVPDSGPCVTYVSKGGSGNF-VKMIHNGIEYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G~g~~-~K~v~N~~~~~~~~~~~Ea~~l~~~ 213 (487)
.+|++ ++++++...-.+ .-.+| ..-...++.++..+.+.
T Consensus 123 ~lG~~-------vv~~~~~~hd~~~AAvsh---~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 123 ELGGS-------IVEIADDKRAQLAAALTY---AGFLSTLQRDASYFLDE 162 (232)
T ss_dssp HTTCE-------ECCCCGGGHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhCCE-------EEEeCHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 99987 477776332222 22233 22245566777766643
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=148.79 Aligned_cols=117 Identities=9% Similarity=0.153 Sum_probs=97.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHhhCCCCCCCc
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADLANLL 400 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---w~~Gcii~s~ll~~~~~~~~~~~~~~~ll 400 (487)
.+++|++||+||+++|++|+.++|+|.++++ ..++|..+++++ |+.| .++|++++...+++.+.+.....+
T Consensus 178 ~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~-----~~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~~ 251 (484)
T 4gwg_A 178 EGAGHFVKMVHNGIEYGDMQLICEAYHLMKD-----VLGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKHL 251 (484)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCcc
Confidence 4899999999999999999999999999986 244887666555 9999 689999999999998543234577
Q ss_pred CChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011394 401 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 448 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~ 448 (487)
+|.+.+...++++| ||+++.|+++|+|+|+|++||+ ++++++.+|.
T Consensus 252 ld~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~ 299 (484)
T 4gwg_A 252 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 299 (484)
T ss_dssp GGGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHH
Confidence 77777777889999 9999999999999999999996 5555555543
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=142.62 Aligned_cols=246 Identities=14% Similarity=0.141 Sum_probs=149.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~-~~l~~advIi~~vp~~~ 85 (487)
+|||+|||+|.||..+|..|+++|++|++|+|+++.++.....+. .......++.+.+ . .+|+||++||+.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~----~~~~~~~~~~~~~~~---~~D~vilavk~~- 73 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA----PAQDIVVKGYEDVTN---TFDVIIIAVKTH- 73 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS----CCEEEEEEEGGGCCS---CEEEEEECSCGG-
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe----eccceecCchHhcCC---CCCEEEEeCCcc-
Confidence 479999999999999999999999999999999765431111110 0112222333332 3 389999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
+++++++.+.+.+.++++||.+.|+...... +... ++.++.+-..| +..+..++ .+.. ++.+..+.+.
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~ 146 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFR 146 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHH
Confidence 7999999999999889999999998754332 2111 22222221111 11111122 2222 3445566676
Q ss_pred HHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH--------------------HHHHHHHHHHHHHHHHHHhCCCC--
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG--------------------IEYGDMQLIAEAYDVLKSVGKLT-- 218 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~--------------------~~~~~~~~~~Ea~~l~~~~g~i~-- 218 (487)
++|+.-+-+ +.+..+.-...+-|++-|. ....+..++.|+.+++++.| ++
T Consensus 147 ~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~ 218 (294)
T 3g17_A 147 DLVQDSQID-------IVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFS 218 (294)
T ss_dssp HHTTTSSCE-------EEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHhCCCc-------eEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCC
Confidence 776654432 3444556677778887775 23345578899999999988 66
Q ss_pred HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 219 NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 219 ~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
.+.+.+.+........ ....++..++...+. ..+|.+.. +.++.|+++|+|+|+...
T Consensus 219 ~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 275 (294)
T 3g17_A 219 EQTVDTIMTIYQGYPD-EMGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDT 275 (294)
T ss_dssp HHHHHHHHHHHHTSCT-TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CCCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHH
Confidence 4444444432222111 111223334433321 24666654 578999999999999775
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=135.84 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.|+|+|||+|.||.++|++|.+.|++|++|||++++..+..... ++..+ +++++++. +|+||++||+. .
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~------G~~~~-~~~e~~~~---aDvVilavp~~-~ 84 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH------GLKVA-DVKTAVAA---ADVVMILTPDE-F 84 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT------TCEEE-CHHHHHHT---CSEEEECSCHH-H
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC------CCEEc-cHHHHHhc---CCEEEEeCCcH-H
Confidence 46899999999999999999999999999999987643333221 24444 88888877 99999999986 5
Q ss_pred HHHHHH-HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhh------hcCCC-cc-cc--CCCHH
Q 011394 87 VDETIK-TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEG------ARHGP-SL-MP--GGSFE 154 (487)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~------a~~G~-~i-~~--gg~~~ 154 (487)
...++. ++.+.++++.+|+|+++.. . .+.......++.++. +| +|.... ...|. .+ .+ +.+.+
T Consensus 85 ~~~v~~~~i~~~l~~~~ivi~~~gv~---~-~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~ 159 (338)
T 1np3_A 85 QGRLYKEEIEPNLKKGATLAFAHGFS---I-HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGN 159 (338)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCCHH---H-HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSC
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCch---h-HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHH
Confidence 688888 8999999999999985421 1 121111133556664 46 332211 11255 43 33 34677
Q ss_pred HHHHHHHHHHHHhc-cCCCCCCeEEEeCCchhhHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 155 AYKYIEDILLKVAA-QVPDSGPCVTYVSKGGSGNFVKMIHN-GIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 155 ~~~~v~~ll~~ig~-~~~~~~~~~~~~G~~G~g~~~K~v~N-~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
+.+.+..+++.+|. +. -++.+..........++.+ .+..+...+++.++..+.+.| +++++.
T Consensus 160 a~~~~~~l~~~lG~~~a-----gv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 160 AKNVALSYACGVGGGRT-----GIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp HHHHHHHHHHHTTHHHH-----CEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHcCCCcc-----ceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 88999999999996 20 0244432222222233333 222223444455555556788 998765
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=139.01 Aligned_cols=272 Identities=11% Similarity=0.016 Sum_probs=162.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC--------cEEEEeCChHH-----HHHHHHhhhhcC---C----CCccccCCHHHHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF--------PISVYNRTTSK-----VDETVERAKKEG---D----LPLFGFRDPESFV 68 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~~~~~g---~----~~~~~~~s~~e~~ 68 (487)
||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+.....+.. + .++.+++++++++
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 89999999999999999999875 49999998753 333332222110 0 1467788999988
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH---HHHHHHHHH-cCCe--EEecCCCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT---ERREKAMAE-LGLL--YLGMGVSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~-~g~~--~i~~pvsgg~~~a~ 142 (487)
+. +|+||++||.. .++.+++++.+++.++.++|.++.+....+ +.+.+.+.+ .+.. ++..|-+ ..+-++
T Consensus 116 ~~---ad~ii~avPs~-~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~-A~EVa~ 190 (391)
T 4fgw_A 116 KD---VDIIVFNIPHQ-FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANI-ATEVAQ 190 (391)
T ss_dssp TT---CSEEEECSCGG-GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCC-HHHHHT
T ss_pred hc---CCEEEEECChh-hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCch-HHHhhc
Confidence 87 99999999985 899999999999999999999988764222 112233322 2333 3344433 334444
Q ss_pred CCC-ccccC-CC---------HHHHHHHHHHHHH-----------HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHH
Q 011394 143 HGP-SLMPG-GS---------FEAYKYIEDILLK-----------VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD 200 (487)
Q Consensus 143 ~G~-~i~~g-g~---------~~~~~~v~~ll~~-----------ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~ 200 (487)
.-+ .+.++ .+ +...+.++.+|.. +|.++...-|+++.++. |.....++-.|+-.+.+
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAa-Gi~dGlg~G~NakAALi 269 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGC-GFVEGLGWGNNASAAIQ 269 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHH-HHHhcCCCCCCHHHHHH
Confidence 444 33332 22 1223456666532 11110001133444432 55555677889999999
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHH------HHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhcc--CCCCc
Q 011394 201 MQLIAEAYDVLKSV--GKLTNEEL------QNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT--GMKGT 270 (487)
Q Consensus 201 ~~~~~Ea~~l~~~~--g~i~~~~i------~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~--~~kgt 270 (487)
...++|+..++... ||-++..+ -|++-+.. + .+++.+. ..+.+ .+..++.+.+.+ +|+-+
T Consensus 270 trGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~-s-SRNr~~G---~~lg~-----~G~~~~~~~~~~~~g~v~E 339 (391)
T 4fgw_A 270 RVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCA-G-GRNVKVA---RLMAT-----SGKDAWECEKELLNGQSAQ 339 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHH-S-SHHHHHH---HHHHH-----TCCCHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEec-C-CccHHHH---HHHHh-----cCCCHHHHHHHHhCCCEEe
Confidence 99999999999987 32333322 22221110 1 1111111 11111 123445555554 67888
Q ss_pred hHHHHH----HHHHcCC--CchhHHHHHHHHHh
Q 011394 271 GKWTVQ----QAADLSV--AAPTIASSLDARFL 297 (487)
Q Consensus 271 g~~~~~----~a~~~gv--~~P~~~~a~~~r~~ 297 (487)
|..++. .++++|+ .+|++.+ |++-+.
T Consensus 340 Gv~ta~~v~~l~~~~~v~~emPI~~~-vy~IL~ 371 (391)
T 4fgw_A 340 GLITCKEVHEWLETCGSVEDFPLFEA-VYQIVY 371 (391)
T ss_dssp HHHHHHHHHHHHHHHTCSTTCHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHh
Confidence 877764 4667898 8998765 555443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-15 Score=147.43 Aligned_cols=137 Identities=14% Similarity=0.172 Sum_probs=105.2
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
...++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... ++..+.+++++++. +|+|++|+|
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp 205 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTL 205 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeC
Confidence 3457899999999999999999886 76 899999999999998875321 14567899999887 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe----cCCCCCh----hhhcCCC-ccccCCCH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG----MGVSGGE----EGARHGP-SLMPGGSF 153 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~----~pvsgg~----~~a~~G~-~i~~gg~~ 153 (487)
.. +.++.. +.+++|++|+++++..|.. .++.+.+.+++..|+| +|+..|. .++..|+ ..|++|+.
T Consensus 206 ~~---~~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~ 279 (312)
T 2i99_A 206 AT---EPILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVK 279 (312)
T ss_dssp CS---SCCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSS
T ss_pred CC---CcccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCC
Confidence 64 233322 5678999999999888864 5666777778899999 6773343 3445566 66777765
Q ss_pred H
Q 011394 154 E 154 (487)
Q Consensus 154 ~ 154 (487)
+
T Consensus 280 ~ 280 (312)
T 2i99_A 280 P 280 (312)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=133.60 Aligned_cols=243 Identities=14% Similarity=0.040 Sum_probs=135.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------cCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------FRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--------~~s~~e~~~~l~~advIi 78 (487)
+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.+.. +.. .....+.. ..+|+||
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~-----~~~~~~~~~~~~~~~~~~~---~~~D~vi 72 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIR-----LYKGGEEFRADCSADTSIN---SDFDLLV 72 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEE-----EEETTEEEEECCEEESSCC---SCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCce-----EecCCCeeccccccccccc---CCCCEEE
Confidence 479999999999999999999 999999999999988888765421 110 00001222 3499999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec------CCCC-Chh-hhcCCCccccC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM------GVSG-GEE-GARHGPSLMPG 150 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~------pvsg-g~~-~a~~G~~i~~g 150 (487)
++||+. +++++++.+.+. .++. ||...|+.... +.+.+.+. .-.++.+ -..+ |.. ....|. +..|
T Consensus 73 lavK~~-~~~~~l~~l~~~-~~~~-ivs~~nGi~~~-e~l~~~~~--~~~vl~g~~~~~a~~~~pg~v~~~~~g~-~~iG 145 (307)
T 3ego_A 73 VTVKQH-QLQSVFSSLERI-GKTN-ILFLQNGMGHI-HDLKDWHV--GHSIYVGIVEHGAVRKSDTAVDHTGLGA-IKWS 145 (307)
T ss_dssp ECCCGG-GHHHHHHHTTSS-CCCE-EEECCSSSHHH-HHHHTCCC--SCEEEEEEECCEEEECSSSEEEEEECCC-EEEE
T ss_pred EEeCHH-HHHHHHHHhhcC-CCCe-EEEecCCccHH-HHHHHhCC--CCcEEEEEEeeceEECCCCEEEEeeeee-EEEE
Confidence 999975 789999888764 4555 88888887422 12222111 1122221 1111 110 011122 2222
Q ss_pred ---CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHH---------------------HHHHHHHHHH
Q 011394 151 ---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAE 206 (487)
Q Consensus 151 ---g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~---------------------~~~~~~~~~E 206 (487)
++.+.++.+..+|..-+. + +.+..+.-...+-|++.|.. ...+..++.|
T Consensus 146 ~~~~~~~~~~~l~~~l~~ag~------~-~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E 218 (307)
T 3ego_A 146 AFDDAEPDRLNILFQHNHSDF------P-IYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQE 218 (307)
T ss_dssp ECTTCCGGGGTTTTSSCCTTS------C-EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHhhhCCC------C-cEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHH
Confidence 222222222222222121 2 23444566677788877742 2334567778
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCch
Q 011394 207 AYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (487)
Q Consensus 207 a~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P 286 (487)
+..+++.. +++++.+-+....... .....++..++...+. ..+|.+.. ..++.|+++|+|+|
T Consensus 219 ~~~va~~~---~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP 280 (307)
T 3ego_A 219 ACRILKLE---NEEKAWERVQAVCGQT-KENRSSMLVDVIGGRQ-----TEADAIIG---------YLLKEASLQGLDAV 280 (307)
T ss_dssp HHHHHTCS---CHHHHHHHHHHHHHHT-TTCCCHHHHHHHHTCC-----CSHHHHHH---------HHHHHHHHTTCCCH
T ss_pred HHHHHhcc---ChHHHHHHHHHHHHhc-CCCCchHHHHHHcCCc-----ccHHHhhh---------HHHHHHHHcCCCCc
Confidence 88777533 2343333221111100 1111223334433321 35777765 47899999999999
Q ss_pred hHHH
Q 011394 287 TIAS 290 (487)
Q Consensus 287 ~~~~ 290 (487)
+...
T Consensus 281 ~~~~ 284 (307)
T 3ego_A 281 HLEF 284 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=125.79 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=100.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|++|||++++.+. ....++++++++. +|+|++++|....+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 58999999999999999999999999999998764321 2346689999988 99999999977677
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~ 139 (487)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++.++......|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7766 667888999999999999999999999999998888887777777654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-11 Score=122.47 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHH-CCCcEEEEe---CChHHHHHHHHhhh------hcCC------CCcc-ccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAE-KGFPISVYN---RTTSKVDETVERAK------KEGD------LPLF-GFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~-~G~~V~v~d---r~~~~~~~l~~~~~------~~g~------~~~~-~~~s~~e~~~ 69 (487)
||||+|||+|.||..+|..|++ +|++|++|| |++++++.+.+... ..++ .++. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4799999999999999999998 599999999 88888877443321 0000 0122 5567888777
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
. +|+||++||+. +.+++++++.+.+.++++|++..+
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETTC
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6 99999999986 689999999999999999998543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=133.18 Aligned_cols=193 Identities=16% Similarity=0.244 Sum_probs=132.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-----------hhcC----CCCccccCCHHHHHhhc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-----------KKEG----DLPLFGFRDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-----------~~~g----~~~~~~~~s~~e~~~~l 71 (487)
..||||||+|.||..||..++.+|++|+++|++++.++...+.. .... ..++..+++.+++.
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 392 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELS--- 392 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGG---
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHh---
Confidence 46899999999999999999999999999999998765433211 0000 00345566666543
Q ss_pred CCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecC-CCCChhhhcCCC
Q 011394 72 QKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMG-VSGGEEGARHGP 145 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~p-vsgg~~~a~~G~ 145 (487)
+||+||.+|+....++. ++.++.+.++++.|+...|++.|.+ ++++.+.. + |.||+..| ++.-.
T Consensus 393 -~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~--~ia~~~~~p~r~ig~HFfnP~~~m~LV------- 462 (742)
T 3zwc_A 393 -TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD--DIASSTDRPQLVIGTHFFSPAHVMRLL------- 462 (742)
T ss_dssp -SCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEECCSSTTTCCEE-------
T ss_pred -hCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChH--HHHhhcCCccccccccccCCCCCCceE-------
Confidence 39999999999887774 5578888888888887666655443 34332211 1 55665433 11111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 146 SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 146 ~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
-|+.| .++++++.+..+.+.+++.+ +.+.+ ..|. +.|.+ ....+.|++.++.. | .+++++.
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lgK~p-------V~vkd-~pGF----i~NRi---~~~~~~ea~~l~~e-G-~~~~~id 525 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIGKIG-------VVVGN-CYGF----VGNRM---LAPYYNQGFFLLEE-G-SKPEDVD 525 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEE-------EECCC-STTT----THHHH---HHHHHHHHHHHHHT-T-CCHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCC-------cccCC-CCCc----cHHHH---hhHHHHHHHHHHHc-C-CCHHHHH
Confidence 14444 48899999999999999763 55653 5555 44665 44556999998875 6 8999999
Q ss_pred HHHHhh
Q 011394 224 NVFTEW 229 (487)
Q Consensus 224 ~v~~~~ 229 (487)
+++..+
T Consensus 526 ~a~~~~ 531 (742)
T 3zwc_A 526 GVLEEF 531 (742)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 987543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=123.70 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=91.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||..+|+.|...|++|++|||++++.+.+.+. ++... +++++++. +|+|++++|....
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~-~l~e~l~~---aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-------QAEFV-STPELAAQ---SDFIVVACSLTPA 223 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-------TCEEC-CHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-------CceeC-CHHHHHhh---CCEEEEeCCCChH
Confidence 3589999999999999999999999999999988765544322 23444 88888887 9999999998766
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
++.++ .++.+.+++|.++|++|++.+.+...+.+.+.+.++..
T Consensus 224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~g 267 (330)
T 2gcg_A 224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267 (330)
T ss_dssp TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccE
Confidence 66666 46777889999999999998888888888887765543
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=121.73 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=95.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||..+|+.|...|++|++|||++++ +...+.+ +. ..+++++++. +|+|++++|....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~~~l~~---aDvVil~vp~~~~ 217 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AE-FKPLEDLLRE---SDFVVLAVPLTRE 217 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CE-ECCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------cc-cCCHHHHHhh---CCEEEECCCCChH
Confidence 368999999999999999999999999999999876 4333222 33 3588888887 9999999998876
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
++.++ .++.+.++++.++|++|++.+.+...+.+.+.+..+......|++.
T Consensus 218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 76666 4677888999999999999988888888888876665544445543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=122.37 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=97.1
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.||..+|+.|. ..|++|.+|||++++.+...+.+ +..+.+++++++. +|+|++++|....
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSGG
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCChH
Confidence 58999999999999999999 99999999999987655443322 3445688898887 9999999998876
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
++.++ .++++.++++.+|||++++.+.+...+.+.+.+..+......|++.+
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 77766 45677889999999999999888888888887755544555666543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=123.17 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=99.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|++|...|++|.+|||++...+.+.+.+ +....+++++++. +|+|++++|....+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEKT 234 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999875555444332 4556789999988 99999999977677
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.++.+++|.++||++++...+...+.+.+.+..+......|+..+
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 286 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCC
Confidence 7666 56778899999999999999999999999998876654444455443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-13 Score=125.74 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=110.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ ..+++++++++ .++|+|++|+|+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~--------------~~~~~~~~l~~--~~~DvVv~~~~~~~- 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE--------------KMVRGIDEFLQ--REMDVAVEAASQQA- 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT--------------TEESSHHHHTT--SCCSEEEECSCHHH-
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh--------------hhcCCHHHHhc--CCCCEEEECCCHHH-
Confidence 58999999999999999999999997 6999985 221 13678888873 23999999999763
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhH---HHHHHHHHHcCCe-EEecCCCCChhhhcCCCccccCCCHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENT---ERREKAMAELGLL-YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~~g~~-~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~l 162 (487)
..+++ ...+..|..||+.++..+... +++.+..+++|.. ++++|++|+...+..+.. +++...+...++.
T Consensus 63 ~~~~~---~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 63 VKDYA---EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp HHHHH---HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred HHHHH---HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 33333 344568999999988765433 5666666777877 689999999876665543 4443333333343
Q ss_pred HHHHhccCCCCCCeEEEeCCchhh-HHHHhHHHHHH
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSG-NFVKMIHNGIE 197 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g-~~~K~v~N~~~ 197 (487)
++..+ ++++|.|+.+.+ ...|...|.+.
T Consensus 137 ~~~~~-------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR-------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS-------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc-------ceEEEeccHHHHHHHCCchHHHHH
Confidence 33333 457888885433 45666666653
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=121.42 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=97.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+|||++.. +...+. ++..+.++++++++ +|+|++++|...++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARAD-------GFAVAESKDALFEQ---SDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHT-------TCEECSSHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhc-------CceEeCCHHHHHhh---CCEEEEeccCcHHH
Confidence 58999999999999999999999999999998643 333332 24566799999988 99999999987677
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+.++ .+.++.+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 280 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCC
Confidence 7666 5677889999999999999999999999999888776544444433
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=119.45 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||+.+|+.|...|++|.+|||++++.. + .....++++++++ +|+|++++|....
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~ 228 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPE 228 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChH
Confidence 35899999999999999999999999999999976531 1 3346789998887 9999999998766
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
++.++ .+.++.++++.++||+|++.+.++..+.+.+.+..+.....-|+.
T Consensus 229 t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 229 TTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp GTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 77777 456677889999999999999999999998887655544333333
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=119.64 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+|||++++. . ......+++|+++. +|+|++++|...++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~-------~~~~~~sl~ell~~---aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----V-------DWIAHQSPVDLARD---SDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----S-------CCEECSSHHHHHHT---CSEEEECC------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----c-------CceecCCHHHHHhc---CCEEEEeCCCCHHH
Confidence 689999999999999999999999999999997641 1 13456789999988 99999999987788
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.++.++++.++||++++...+...+.+.+++..+......|+..+
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 8888 67788899999999999999999888888888776655555555443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=118.23 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=97.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||++...+... + ...+.++++++++ +|+|++++|...++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5899999999999999999999999999999875433211 2 3456799999987 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~ 139 (487)
+.++ .+.+..+++|.++||++.+...+...+.+.+.+..+......|+..++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7766 567788999999999999999999999999987666555555655544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-12 Score=123.91 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=97.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......++++++++ +|+|++++|...++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5899999999999999999999999999999876532211 11234678899888 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..+++|.++||+|++...+...+.+.+.+..+......|+..+
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 257 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 257 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCC
Confidence 7766 56778899999999999999999999999998877766666666554
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=120.19 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=94.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-++|||||+|.||+.+|++|...|++|.+||+++++.. ....+ +..+.+++++++. +|+|++++|...+
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g-------~~~~~~l~ell~~---aDvV~l~~P~t~~ 236 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALG-------LQRVSTLQDLLFH---SDCVTLHCGLNEH 236 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcC-------CeecCCHHHHHhc---CCEEEEcCCCCHH
Confidence 35899999999999999999999999999999876421 12111 3445689999988 9999999998767
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
++.++ ++.++.+++|.++||++++.+.+...+.+.+.+.++.....-|+
T Consensus 237 t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~ 286 (347)
T 1mx3_A 237 NHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 286 (347)
T ss_dssp CTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeec
Confidence 77777 56778899999999999999999999999998876654333333
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-11 Score=120.53 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=98.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LR-QVACSELFAS---SDFILLALPLNADT 214 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EE-ECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------ce-eCCHHHHHhh---CCEEEEcCCCCHHH
Confidence 5899999999999999999999999999999975444433332 22 3489999988 99999999987667
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.++.+++|.++||++++.+.+...+.+.+.+.++.....-|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 7666 57788899999999999999999999999998887765555565444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-11 Score=117.82 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=92.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.||..+|++|...|++|++||+ ++++. ...+.+ +....+++++++. +|+|++++|...+
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g-------~~~~~~l~ell~~---aDvVil~~p~~~~ 215 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPE 215 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcC-------cEEcCCHHHHHhh---CCEEEEeccCchH
Confidence 5899999999999999999999999999999 87663 222222 3445589999887 9999999998766
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
++.++ +..++.+++|.++||++++.+.+...+.+.+.+..+.-...-|+.
T Consensus 216 t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~ 266 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 266 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 77666 457788999999999999988788888888877654433333443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.7e-11 Score=118.84 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=93.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-++|||||+|.||+.+|+.|...|++|++|||++++ +...+.+ +.. .+++++++. +|+|++++|....
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~e~l~~---aDiVil~vp~~~~ 213 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-------ARY-MDIDELLEK---SDIVILALPLTRD 213 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-cCHHHHHhh---CCEEEEcCCCChH
Confidence 358999999999999999999999999999999876 3333222 333 378888887 9999999998866
Q ss_pred HHHHHH-HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 87 VDETIK-TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
++.++. ++.+.++++ ++||+|++.+.+...+.+.+.+..+......+++.
T Consensus 214 t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 264 (333)
T 2d0i_A 214 TYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 (333)
T ss_dssp TTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSS
T ss_pred HHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCC
Confidence 777763 566788899 99999999988888888888765555555555543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=123.20 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=95.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|++|||++...+.+. ......+++++++. +|+|++++|...++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD---------QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS---------EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh---------cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999874322110 12235688999887 99999999977667
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..+++|.++||+|++.+.+...+.+.+.+..+......|+..+
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 7666 45667789999999999999999999999998876655544555443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.3e-11 Score=115.97 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|++|...|++|++|||++++ +...+.+ +.. .+++++++. +|+|++++|...++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 58999999999999999999999999999999876 3333322 333 478898887 99999999987666
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.++.+++|.++||++++.+.+...+.+.+.+..+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 6666 4667789999999999999888888888888876554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=117.68 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|++|||++++. ...+.+ +.. .+++++++. +|+|++++|...++
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKIN-------AKA-VSLEELLKN---SDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCCTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcC-------cee-cCHHHHHhh---CCEEEEeccCChHH
Confidence 589999999999999999999999999999998764 222222 333 488899887 99999999987666
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+.++ ++.++.+++|.++||++++.+.+...+.+.+.+.++.-...-|+..
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 261 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSS
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCC
Confidence 6666 5566788999999999999988888888888776543333334433
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=118.68 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=101.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------CCcEEEEeCChHH-HHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSK-VDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~adv 76 (487)
+||||||+|+||.++|++|.++ |++|++++++.++ .+...+.+ +.. +.+++|+++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 9999988776443 33333333 232 3688999988 999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHH--HHHHcCCeEE-ecCCCCChh-------hh---cC
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK--AMAELGLLYL-GMGVSGGEE-------GA---RH 143 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~i-~~pvsgg~~-------~a---~~ 143 (487)
||++||+. ....+++++.+.+++|++|+.+.... ...+.+ .....++.++ -+|-..+.. +. -.
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf~---I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGFL---LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSHH---HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCCC---HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999986 45678889999999999976665431 111221 0112355555 567665553 10 13
Q ss_pred CC-ccc-cCC--CHHHHHHHHHHHHHHhcc
Q 011394 144 GP-SLM-PGG--SFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 144 G~-~i~-~gg--~~~~~~~v~~ll~~ig~~ 169 (487)
|. +++ +.. +.++.+.+..++..+|..
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG~~ 230 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALGSP 230 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTTCS
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCCCC
Confidence 44 233 333 347889999999999963
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=122.19 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=108.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|++|...|++|++||+++.. +...+.+ +..+ +++++++. +|+|++++|...++
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPET 210 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchHH
Confidence 68999999999999999999999999999998753 3333322 3333 78898888 99999999988677
Q ss_pred HHHHHH-HhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhh----cCCC-ccc---cC-CCHHHHH
Q 011394 88 DETIKT-LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGA----RHGP-SLM---PG-GSFEAYK 157 (487)
Q Consensus 88 ~~vl~~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a----~~G~-~i~---~g-g~~~~~~ 157 (487)
..++.+ +++.+++|.+|||++++.+.+...+.+.+.+..+......++++++.+ ...+ .++ .+ .+.++.+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 777754 778899999999999999988888888887654443333344443322 2334 332 24 3666666
Q ss_pred H-----HHHHHHHHhcc
Q 011394 158 Y-----IEDILLKVAAQ 169 (487)
Q Consensus 158 ~-----v~~ll~~ig~~ 169 (487)
+ ++.+.+.++..
T Consensus 291 ~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 291 RAGTDVAESVRLALAGE 307 (529)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 4 55666666543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=121.57 Aligned_cols=119 Identities=20% Similarity=0.271 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|++|||+++..+.+. ......+++++++. +|+|++++|...++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDiV~l~~Plt~~t 207 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---------SYVGREELRAFLNQ---TRVLINLLPNTAQT 207 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE---------EEESHHHHHHHHHT---CSEEEECCCCCGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh---------hhcccCCHHHHHhh---CCEEEEecCCchhh
Confidence 5899999999999999999999999999999876432110 01123578888887 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..+++|.++||++.+...+...+.+.+.+..+......|+..+
T Consensus 208 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 7777 67788899999999999999999999999998876654444555443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=116.73 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|++|...|++|++|||++++. ...+.+ +. ..+++++++. +|+|++++|...++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFG-------VQ-QLPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTT-------CE-ECCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcC-------ce-eCCHHHHHhc---CCEEEEecCCCHHH
Confidence 589999999999999999999999999999987652 222222 22 3488898887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.++.+++|.++||++++.+.+...+.+.+.+..+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7777 5678889999999999999988888888888876544
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=114.88 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+||+++.. +...+.+ +. ..+++++++. +|+|++++|...++
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 58999999999999999999999999999998633 3333322 23 4589999987 99999999988788
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+.++ .+.+..+++|.++||++.+...+...+.+.+++..+. ....|+..
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~ 294 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPE 294 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCC
Confidence 8877 6778889999999999999999999999998877665 34455544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=116.60 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=94.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+|||+++.. .+. ... ..+++++++. +|+|++++|....+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~-------~~~-~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEP-------FLT-YTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhc-------ccc-ccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999997641 111 122 3489999988 99999999987666
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~ 139 (487)
+.++ .+.+..+++|.++||++++...+...+.+.+.+..+.....-|+..++
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 6666 566778999999999999999999999999988766544444444433
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-11 Score=120.13 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=94.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +..+.+++++++. +|+|++++|...++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchHH
Confidence 5899999999999999999999999999999876544333322 3445689999887 99999999987677
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.++ .+.++.+++|.++||++++...+...+.+.+.+..+.....-|+.
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~ 311 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF 311 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence 7777 567788999999999999988888888888877654433333443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=118.38 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.||..+|++|...|++ |++|||++.+.+...+.+ +....+++++++. +|+|++++|....
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG-------ARRVENIEELVAQ---ADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT-------EEECSSHHHHHHT---CSEEEECCCCSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC-------cEecCCHHHHHhc---CCEEEECCCCChH
Confidence 5899999999999999999999997 999999876555433322 3445689999887 9999999998877
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
++.++ +..++.+++|.++||++++.+.+...+.+.+.+.++.....-|+
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf 284 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW 284 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecC
Confidence 77777 56778899999999999999889989999888876544333344
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=9e-11 Score=115.79 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=92.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~t 188 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKHT 188 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchHH
Confidence 5899999999999999999999999999999876 11 1 1245688898887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+.+..+.....-|+
T Consensus 189 ~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 189 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 7777 46788899999999999999888888888888766544434444
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=118.53 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=91.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+||+++.... . ......+++++++. +|+|++++|...++
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~-----~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY-----G------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB-----T------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc-----c------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999754210 0 13456799999998 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..+++|.++||+|++.+.+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7766 56778899999999999999999999999988766554444555443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=117.12 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=96.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
++|||||+|.||+.+|++|...|++|.+||++.+... . .....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~-------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----D-------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----C-------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----c-------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 5899999999999999999999999999998543211 1 1246789999988 9999999997766
Q ss_pred ---HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChh
Q 011394 87 ---VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (487)
Q Consensus 87 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~ 139 (487)
++.++ .+.+..+++|.++||+|.+.+.+...+.+.+++.++......|+..++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 66666 566778999999999999999999999999988877777777776543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-10 Score=112.81 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=94.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|+++...|++|++|||++++. + +.. +....+++++++. +|+|++++|...++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 589999999999999999999999999999998764 2 222 2334589999887 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+.++ +..++.+++|.++|+++++.+.+...+.+.+++..+.....-|+-.
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~ 264 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCC
Confidence 7666 4566788999999999999999999999999887665444444443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=117.46 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=90.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|.+|||++... .+ .+....+++|+++. +|+|++++|...++
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 589999999999999999999999999999976531 11 13456789999988 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++||+|++.+.+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 7777 5677889999999999999999998888888775443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=113.43 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=89.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|.||..+|++|...|++|++|||++++.. . ...+++++++. +|+|++++|....
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~---------~~~~l~ell~~---aDvV~l~~p~~~~ 206 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----Y---------PFLSLEELLKE---ADVVSLHTPLTPE 206 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----S---------CBCCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----c---------ccCCHHHHHhh---CCEEEEeCCCChH
Confidence 35899999999999999999999999999999876532 1 14578898887 9999999998866
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
++.++ .+.++.+++|.++||++++.+.+...+.+.+. ..+.....-+++
T Consensus 207 t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~ 256 (311)
T 2cuk_A 207 THRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTD 256 (311)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCS
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCC
Confidence 77766 35677899999999999998888888888887 554433333443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=113.02 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
++|||||+|.||..+|++|...|++|.+||++++.. ..+ . ...+++++++. +|+|++++|....
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCcccc
Confidence 589999999999999999999999999999876532 111 1 24689999987 9999999998766
Q ss_pred ---HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 87 ---VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 87 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
+..++ .+.++.+++|.++||+|++.+.+...+.+.+.+.++.....-|+..
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~ 236 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEG 236 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTT
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeecc
Confidence 66666 4677889999999999999988998899988877665554455544
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.6e-10 Score=111.08 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=94.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+++...|++|++|||++++. + +.. +. ..+++++++. +|+|++++|....+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 589999999999999999999999999999987643 1 111 12 3488999887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++.++.-...-|+-.+
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 263 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCC
Confidence 7766 56778899999999999999999999999888766655555555544
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-10 Score=111.15 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|++|||++++. + +.. + ...+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~-~~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-------C-TQVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-------C-EECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-------c-ccCCHHHHHhh---CCEEEEecCCchHH
Confidence 589999999999999999999999999999987643 1 111 1 23488999887 99999999987666
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+.+.++.....-|+-.+
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 264 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE 264 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCC
Confidence 6666 46778899999999999999999999999998876655555555444
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=94.93 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=82.9
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . +...+.|++|+.+. +|++++++|+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~-------G~~~~~s~~el~~~---vDlvii~vp~ 79 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----E-------GLKCYRSVRELPKD---VDVIVFVVPP 79 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----T-------TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----C-------CeeecCCHHHhCCC---CCEEEEEeCH
Confidence 57999999 9999999999999999866666654322 1 35678899998876 9999999995
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
..+.++++++.+ ...+.+|++.++. .+++.+.+++.|+.+++.
T Consensus 80 -~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 80 -KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp -HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcC
Confidence 678888888776 4556788888774 456777778889999973
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=88.05 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~v 81 (487)
|+..|+|.|||+|.+|..++..|.+.|++|+++|+++++.+.+.+..... -+.. ..+.+.+.+ .++++|+||+++
T Consensus 1 ~~~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 1 GSHGMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE---EEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 34457999999999999999999999999999999999888776531100 0111 123333322 245699999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
|++ .....+..+.+.+.++.+|+..++.. . .+.+...|+.++-.|
T Consensus 78 ~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 78 GKE-EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp SCH-HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred CCc-hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 876 34444445556677778887655432 2 234556788777666
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=104.46 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=83.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh--
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP-- 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~-- 86 (487)
+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+... .. ..+++++ +. +|+||+++|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 7999999999999999999999999999999999888876542 22 4567777 66 9999999998731
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+..++. .+.+++|.+|+|+++. |..+ ++.+.++++|..+++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 112221 3567889999999886 4444 466667777887763
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=105.42 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=94.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.+. ......+++++++. +|+|++++|... +
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~-i 228 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMI-L 228 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCC-B
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhh-h
Confidence 58999999999999999999999999999999988766554321 11113467777665 999999999752 2
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC-CCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG-VSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p-vsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
. +.....++++.++||++....... + +.....|+.++++| +.|....+..+. -..+.+.+++..+
T Consensus 229 ~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~--------l~~~~~~~~l~~~ 294 (300)
T 2rir_A 229 N---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ--------ILANVLSKLLAEI 294 (300)
T ss_dssp C---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH--------HHHHHHHHHHHHH
T ss_pred C---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH--------HHHHHHHHHHHHh
Confidence 2 234567889999999998643332 2 44456799999888 444332222221 2245566677666
Q ss_pred hc
Q 011394 167 AA 168 (487)
Q Consensus 167 g~ 168 (487)
+.
T Consensus 295 ~~ 296 (300)
T 2rir_A 295 QA 296 (300)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=106.07 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+.. ++...++++++++. +|+||.|+|.+..
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~ 199 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLK 199 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSS
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCC
Confidence 36899999999999999999999999999999999988776532 24445577777766 9999999998742
Q ss_pred --HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 --VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 --v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+...+. .+.+.++.+|+|+++ ... ++.+..+++|..+++
T Consensus 200 ~~~~~~i~--~~~l~~g~~viDv~~-~~t---~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 200 DEDPEIFN--YDLIKKDHVVVDIIY-KET---KLLKKAKEKGAKLLD 240 (275)
T ss_dssp TTCCCSSC--GGGCCTTSEEEESSS-SCC---HHHHHHHHTTCEEEC
T ss_pred CCCCCCCC--HHHcCCCCEEEEcCC-ChH---HHHHHHHHCcCEEEC
Confidence 111221 345788999999998 322 244455567877764
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-09 Score=93.73 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=81.9
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
..+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ . ++..+.|++|+... +|+++++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~-------G~~~~~sl~el~~~---~Dlvii~ 77 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----L-------GQQGYATLADVPEK---VDMVDVF 77 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----T-------TEECCSSTTTCSSC---CSEEECC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----C-------CeeccCCHHHcCCC---CCEEEEE
Confidence 357999999 8999999999999999977777664 221 1 35677888888765 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+|+ ..+.++++++.+ ...+.+|++.++. .+++.+.+++.|+.+++
T Consensus 78 vp~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 78 RNS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp SCS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred eCH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 996 578888888776 4456788887655 45677778888999985
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=98.16 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---CCCCccc-cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---GDLPLFG-FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---g~~~~~~-~~s~~e~~~~l~~advIi~~ 80 (487)
||||+|||+|.||.++|..|+++| ++|.+||+++++++.+....... -...+.. ..++ +.++. +|+||++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~---aDvViia 76 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD---ADVVIST 76 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC---CCEEEEe
Confidence 479999999999999999999999 79999999999887766432100 0001233 3455 44444 9999999
Q ss_pred cCCChh-------------------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAP-------------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~-------------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.+.. ++++++.+.++. ++.+||..+|..
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 125 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPV 125 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcH
Confidence 998653 456667777765 566777777643
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-09 Score=90.26 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|+|||+|.||..++..|.+.|++|++|||++++.+++.+.... .....+++.++++. +|+||.++|.+..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~ 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTP 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCc
Confidence 3589999999999999999999999999999999999888765421 23456788888877 9999999998643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+ +. ...+.+|.+++|.+..
T Consensus 94 ~---~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 94 I---VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp S---BC--GGGCCTTCEEEECCSS
T ss_pred E---ee--HHHcCCCCEEEEccCC
Confidence 2 11 2456789999998763
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-09 Score=105.01 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=90.0
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
...++|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..++++++++++ +|+|++|+|
T Consensus 127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTp 203 (350)
T 1x7d_A 127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTA 203 (350)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCC
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEecc
Confidence 345689999999999999998864 346899999999999999876421000014567889998887 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++. ...++. ...+++|.+|++.++..|. .+++...+..++..|+|..
T Consensus 204 s~~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~ 250 (350)
T 1x7d_A 204 DKA-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE 250 (350)
T ss_dssp CSS-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred CCC-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence 862 122221 2467899999999998876 4455555666677888863
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=86.13 Aligned_cols=116 Identities=9% Similarity=0.086 Sum_probs=76.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~--l~~advIi~~vp~ 83 (487)
++|.|+|+|.||..+++.|.+. |++|+++|+++++++.+.+.+... +.. .++.+.+.+. ++++|+||+++|+
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~----~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNV----ISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCE----EECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCE----EEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 5899999999999999999999 999999999999998877644210 111 1233333222 4569999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.....++..+ ..+.+...|+..++ .+.. .+.+.+.|+.++..|
T Consensus 116 ~~~~~~~~~~~-~~~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 116 HQGNQTALEQL-QRRNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp HHHHHHHHHHH-HHTTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred hHHHHHHHHHH-HHHCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 65544444433 33444444444333 2222 234556688887766
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.2e-08 Score=95.58 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=81.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||..+|+.|...|.+|++|||++++.+.+.+.+.. .....+++++++. +|+|++++|....-
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME-----PFHISKAAQELRD---VDVCINTIPALVVT 227 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE-----EEEGGGHHHHTTT---CSEEEECCSSCCBC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe-----ecChhhHHHHhcC---CCEEEECCChHHhC
Confidence 589999999999999999999999999999999877665433211 1112456666665 99999999975221
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+ .....++++.++||++....... + +.....|+.++.+|-.
T Consensus 228 ~----~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 228 A----NVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp H----HHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCH
T ss_pred H----HHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECCCC
Confidence 2 23456789999999997543321 2 4445668888777633
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=94.03 Aligned_cols=113 Identities=11% Similarity=0.076 Sum_probs=84.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++. +++++++++. .++|+|++|+|+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPTD 74 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCGG
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCch
Confidence 56999999999999999999986 67776 7999999998887754 255 8899999873 2389999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
...+.+... +..|+ ++++- .+..+.+.+++.+..++.|+.+..
T Consensus 75 ~h~~~~~~a----l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 75 THADLIERF----ARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp GHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHH----HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 655544332 33455 44443 255667777788877777766553
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=80.73 Aligned_cols=117 Identities=11% Similarity=0.121 Sum_probs=75.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~--l~~advIi~~vp~ 83 (487)
.|++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.+... +....+..+..+. ++++|+||+++|+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~----~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA----VIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcE----EECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 467899999999999999999999999999999999998887654210 1111122233322 3469999999996
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.. ....+-..+..+....+|.-..+. .. .+.+...|+..+-.|
T Consensus 81 ~~-~n~~~~~~a~~~~~~~iia~~~~~--~~----~~~l~~~G~~~vi~p 123 (141)
T 3llv_A 81 DE-FNLKILKALRSVSDVYAIVRVSSP--KK----KEEFEEAGANLVVLV 123 (141)
T ss_dssp HH-HHHHHHHHHHHHCCCCEEEEESCG--GG----HHHHHHTTCSEEEEH
T ss_pred HH-HHHHHHHHHHHhCCceEEEEEcCh--hH----HHHHHHcCCCEEECH
Confidence 53 333333333334455666655443 22 233456677665544
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=92.10 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=82.3
Q ss_pred CCcEEEEcccHHHHH-HHHHHHH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||.. ++..|.+ .+++|. ++|+++++.+++.+... +..++++++++++ +|+|++|+|+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~------~~~~~~~~~ll~~---~D~V~i~tp~ 76 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR------IMPFDSIESLAKK---CDCIFLHSST 76 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT------CCBCSCHHHHHTT---CSEEEECCCG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHHhc---CCEEEEeCCc
Confidence 468999999999996 8888887 467777 89999999998887642 3448899999885 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEe-cCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIID-GGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.+.. . +..|+ ++++ -.+..+.+.+++.+..++.|+.+.
T Consensus 77 ~~h~~~~~~-a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 77 ETHYEIIKI-L---LNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp GGHHHHHHH-H---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred HhHHHHHHH-H---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 865444333 2 34555 4444 345566777777777777776554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=77.75 Aligned_cols=107 Identities=11% Similarity=0.070 Sum_probs=72.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++++|.|+|+|.||..++..|.+.| ++|+++||++++.+.+...+... -..-..+.+++.+.++.+|+||.++|..
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT---KQVDAKDEAGLAKALGGFDAVISAAPFF 80 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEE---EECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcE---EEecCCCHHHHHHHHcCCCEEEECCCch
Confidence 4568999999999999999999999 99999999999988776322110 0001223344444445699999999764
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~ 120 (487)
....+++.. ...|..++|.++.. ..++.+.+
T Consensus 81 -~~~~~~~~~---~~~g~~~~~~~~~~-~~~~~~~~ 111 (118)
T 3ic5_A 81 -LTPIIAKAA---KAAGAHYFDLTEDV-AATNAVRA 111 (118)
T ss_dssp -GHHHHHHHH---HHTTCEEECCCSCH-HHHHHHHH
T ss_pred -hhHHHHHHH---HHhCCCEEEecCcH-HHHHHHHH
Confidence 344444433 34678888887654 34444433
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=80.48 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=75.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~ 84 (487)
..+|.|+|+|.+|..+|+.|.+.|++|+++|+++++++.+.+.+... +....+..+... .++++|+||+++|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence 35799999999999999999999999999999999998887654210 111122223322 234599999999986
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.....++.. +..+.++..+|-..+. + ...+.+.+.|+..+-.|
T Consensus 83 ~~n~~~~~~-a~~~~~~~~iiar~~~-~----~~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 83 YEAGEIVAS-ARAKNPDIEIIARAHY-D----DEVAYITERGANQVVMG 125 (140)
T ss_dssp HHHHHHHHH-HHHHCSSSEEEEEESS-H----HHHHHHHHTTCSEEEEH
T ss_pred HHHHHHHHH-HHHHCCCCeEEEEECC-H----HHHHHHHHCCCCEEECc
Confidence 443333333 3334444444443332 1 23345566788766555
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=93.78 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++||||||+|.||..++..|.+. +++|. ++|+++++++++.+.. +...+++++++++. .++|+|++|+|+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~ 75 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGSPT 75 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECSCG
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeCCc
Confidence 356999999999999999999986 67766 7999999988887653 24678899999873 238999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.+... +..|+ ++++.- +..+...+++.+..++.|+.+.
T Consensus 76 ~~h~~~~~~a----l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (344)
T 3euw_A 76 STHVDLITRA----VERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120 (344)
T ss_dssp GGHHHHHHHH----HHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred hhhHHHHHHH----HHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 7655544332 23444 555543 4555667777777666665444
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=92.89 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. .++|+|++|+|
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 84 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTP 84 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCC
Confidence 346899999999999999999987 67755 8999999998887754 25678999999873 34899999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEe-c-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIID-G-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId-~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+.+.. .+..|+.|+. - -+..+.+.+++.+..++.|..+.
T Consensus 85 ~~~h~~~~~~----al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 85 SGLHPTQSIE----CSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp GGGHHHHHHH----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHH----HHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 8765444333 2345655443 2 24455667777777777776554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=94.55 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHh----hhhcC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.|||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... ..... ..++..+++. +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 4689999999999999999999999 999999999877653211 00000 0134445666 44444 9999999
Q ss_pred cCCC---------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+ ..++++++.+.++. ++.+++..||..
T Consensus 80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 9432 12456667777765 688898888854
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.3e-08 Score=96.86 Aligned_cols=117 Identities=11% Similarity=0.117 Sum_probs=86.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
...++|+|||+|.||..++..|.+ ...+|.+|||++++.+++.+..... ...+. ++++++++ + +|+|++|+|
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-~~~~~-~~~~~e~v-~---aDvVi~aTp 196 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-GISAS-VQPAEEAS-R---CDVLVTTTP 196 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-TCCEE-ECCHHHHT-S---SSEEEECCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-CceEE-ECCHHHHh-C---CCEEEEeeC
Confidence 345689999999999999999987 3468999999999999998764321 01245 77888888 7 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.... ++. ...+++|.+|++.++..|. ..++...+..++..|+|.+
T Consensus 197 ~~~p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 197 SRKP---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp CSSC---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred CCCc---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 8642 221 2467899999999888776 3344444445556788864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.9e-08 Score=94.08 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=81.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|.|||+|.||.+++..|++.|. +|+++||++++++++.+..... .. . ..+.+++.+.+..+|+||.|+|.+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~--~~-~-~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER--RS-A-YFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS--SC-C-EECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc--cC-c-eeeHHHHHhhhccCCEEEECCCCCC
Confidence 3589999999999999999999998 9999999999999888754210 00 1 1122333222334999999999764
Q ss_pred hH--HHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 86 PV--DET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 86 ~v--~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.- +.+ +. ...+.++.+++|+++. |..+. +.+..+++|..+++
T Consensus 217 ~~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 217 HPRVEVQPLS--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQN 261 (297)
T ss_dssp SSCCSCCSSC--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred CCCCCCCCCC--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEEC
Confidence 21 100 11 2346789999999984 66663 66677788887764
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=92.34 Aligned_cols=114 Identities=12% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.... ...+++++++++. .++|+|++|+|+.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSSTN 75 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCCc
Confidence 46999999999999999999885 56765 789999999888776421 2468899999883 2389999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
...+.+... +..|+ ++++-- +..+.+.+++.+..++.|+.+.
T Consensus 76 ~h~~~~~~a----l~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 76 THSELVIAC----AKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp GHHHHHHHH----HHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHHHH----HhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 654444332 33555 555532 5566777778777777776554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=92.40 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh---c-CCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK---E-GDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~---~-g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++.+...... . ...++.. ++. +.++ ++|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~---~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLK---GSDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhC---CCCEEEEcc
Confidence 589999999999999999999999 999999999888775532110 0 0001222 233 3334 499999999
Q ss_pred CCChh---------------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAP---------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~---------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+.. ++++++.+.++. ++.++|..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 97531 456666776664 667777777643
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-07 Score=91.90 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+... +..+++++++++. .++|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 77 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN------CAGDATMEALLAR-EDVEMVIITVPND 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT------CCCCSSHHHHHHC-SSCCEEEECSCTT
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHhcC-CCCCEEEEeCChH
Confidence 45899999999999999999987 77755 88999999988876542 4568899999853 2489999999998
Q ss_pred hhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEEe
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
...+.+... +..|+ ++++-- +..+.+.+++.+..+++|+.+..
T Consensus 78 ~h~~~~~~a----l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v 122 (354)
T 3db2_A 78 KHAEVIEQC----ARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLC 122 (354)
T ss_dssp SHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHH----HHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 665544433 33555 455432 45566777777777777765543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=91.32 Aligned_cols=116 Identities=9% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+... + ..+++++++++. .++|+|++|+|
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 76 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA------IPVAYGSYEELCKD-ETIDIIYIPTY 76 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT------CCCCBSSHHHHHHC-TTCSEEEECCC
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC------CCceeCCHHHHhcC-CCCCEEEEcCC
Confidence 346899999999999999999985 66766 78999999988877642 3 467899999873 23899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+....+.+... +..|+ ++++-- +..+.+.+++.+..++.|+.+...
T Consensus 77 ~~~h~~~~~~a----l~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 77 NQGHYSAAKLA----LSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp GGGHHHHHHHH----HHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CHHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 88655544332 33454 666543 455667777777777777765443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-07 Score=93.53 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=94.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+... ..+.+ ....+++++.++ +|+|++.+|-....
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~--------~~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG--------CVYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT--------CEECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC--------ceecCHHHHHhh---CCEEEEcCCCChhh
Confidence 479999999999999999999999999999876432 22221 235689999998 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~ 139 (487)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|+-.++
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP 261 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence 7777 566778999999999999988888888888877655544445655544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.2e-07 Score=89.99 Aligned_cols=102 Identities=11% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh----hcC-CCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK----KEG-DLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g-~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
..|||+|||+|.||.++|..|+..|+ +|.+||+++++++....... ... ..++..++++++.+++ +|+||+
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~ 84 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIV 84 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEE
Confidence 34799999999999999999999998 99999999987766322110 000 1145566788866665 999999
Q ss_pred ec--CCCh------------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LV--KAGA------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~v--p~~~------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ |... .++++.+.+.++. ++.++|..||..
T Consensus 85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 98 4211 1455666777665 677887776643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-07 Score=90.44 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh----hhc-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKE-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~-g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
++||+|||+|.||.++|..|+.+|+ +|.+||+++++++...... ... ...+++.+++. +.+++ +|+||++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~a 89 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVIIT 89 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEEc
Confidence 4689999999999999999999999 9999999998876532111 000 01135555666 44444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+. .++++.+++.+.. ++.++|..||.
T Consensus 90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 84331 2445556676665 67777777773
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=90.60 Aligned_cols=119 Identities=12% Similarity=0.225 Sum_probs=81.2
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHH-H-CCCcE-EEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIA-E-KGFPI-SVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~-~-~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~adv 76 (487)
|....+++||||||+|.||..++..|. + .+++| .++|+++++.+.+.+.. ++ ..+++++++++. .++|+
T Consensus 2 m~~~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~ 74 (346)
T 3cea_A 2 MVTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDA 74 (346)
T ss_dssp ---CCCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSE
T ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCE
Confidence 555556789999999999999999998 5 36774 58899999988877643 23 467889998863 24899
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEE-Eec-CCCCchhHHHHHHHHHHc-CCeEE
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCI-IDG-GNEWYENTERREKAMAEL-GLLYL 130 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~ii-Id~-st~~~~~~~~~~~~l~~~-g~~~i 130 (487)
|++|+|+....+.+.. .+..|+.| ++. .+..+.+.+++.+..++. |+.+.
T Consensus 75 V~i~tp~~~h~~~~~~----al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIY----AMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp EEECSCGGGHHHHHHH----HHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred EEEeCChHhHHHHHHH----HHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 9999998755444433 23456644 442 334455666666666666 66554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-07 Score=89.10 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=83.3
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||. .++..|.+. +++|. ++|+++++.+++.++. ++..+++++++++. .+.|+|++|+|+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~ 99 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPLPA 99 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECCCG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECCCc
Confidence 35899999999998 799999887 67775 8899999998887754 24566899999863 348999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.+... +..|+ ++++- -+..+.+.+++.+..++.|+.+.
T Consensus 100 ~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 100 VLHAEWIDRA----LRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp GGHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 8655544332 34555 45543 24556777777777777777554
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.50 E-value=7.4e-07 Score=88.26 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||.. ++..|.+. +++|. ++|+++++.+++.+... +..+++.+++.. ++|+|++++|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g------~~~~~~~~~l~~---~~D~V~i~tp~ 75 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR------IPYADSLSSLAA---SCDAVFVHSST 75 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT------CCBCSSHHHHHT---TCSEEEECSCT
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCccCcHHHhhc---CCCEEEEeCCc
Confidence 468999999999997 88888764 67766 89999999888776542 345678887733 49999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
....+.+.. .+..|+ ++++. .+..+.+.+++.+..++.|+.+..
T Consensus 76 ~~h~~~~~~----al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 76 ASHFDVVST----LLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp THHHHHHHH----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHH----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 755443332 244566 55652 445567777777777777776543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=88.72 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~----~-g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.||.++|..|+.+ |++|.+||+++++++........ . ...++..+++.++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 79999999999887755321110 0 0012444566665 444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+|.+. .++++.+.+.++. ++.+|+..||
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97642 1234445666664 5666666765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=81.71 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH-HhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEE
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIM 79 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~ 79 (487)
+....++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+. ..+.. -+.. ..+.+.+.+ .++.+|+||+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFA 90 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEE
Confidence 334457899999999999999999999999999999999876654 22210 0111 122332222 1345999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+++++. ....+..+...+.+...++-..+. +... +.+.+.|+. +-.|
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~iv~~~~~-~~~~----~~l~~~G~~-vi~p 137 (155)
T 2g1u_A 91 FTNDDS-TNFFISMNARYMFNVENVIARVYD-PEKI----KIFEENGIK-TICP 137 (155)
T ss_dssp CSSCHH-HHHHHHHHHHHTSCCSEEEEECSS-GGGH----HHHHTTTCE-EECH
T ss_pred EeCCcH-HHHHHHHHHHHHCCCCeEEEEECC-HHHH----HHHHHCCCc-EEcH
Confidence 999864 333333444443344444443333 2332 234456766 4333
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.4e-07 Score=89.27 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=82.0
Q ss_pred CCcEEEEcccHHHHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+++++++++. .++|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCCc
Confidence 468999999999999999999 4 367765 789999999888775421 14578899999874 348999999998
Q ss_pred ChhHHHHHHHHhhcccCCCE-EEecC-CCCchhHHHHHHHHHHcCCeE
Q 011394 84 GAPVDETIKTLSAYMEKGDC-IIDGG-NEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~i-iId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (487)
....+.+.. .+..|+. +++-- +..+.+.+++.+..++.|..+
T Consensus 77 ~~h~~~~~~----al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 77 PAHESSVLK----AIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHH----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 765544433 2445654 44432 445567777777777777644
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=92.82 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.++.....+..+..+ ++++++++ +|+|++|+
T Consensus 118 ~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~---aDIVi~aT 191 (313)
T 3hdj_A 118 RPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQ---ADIVVTAT 191 (313)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHH---CSEEEECC
T ss_pred cCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhh---CCEEEEcc
Confidence 34456899999999999999999863 4589999999 66666553211001124556 99999988 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcC-CeEEec
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG-LLYLGM 132 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g-~~~i~~ 132 (487)
|.... ++. .+.+++|.+|++.++..|.. +++...+-.+. ..|+|.
T Consensus 192 ~s~~p---vl~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 192 RSTTP---LFA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp CCSSC---SSC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred CCCCc---ccC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 98642 222 35688999999999988764 34433333333 467774
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=87.62 Aligned_cols=99 Identities=13% Similarity=0.224 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCcccc-CCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGF-RDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~--~~~~~~-~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++........... ...+.. ++. +. ++++|+||++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a---~~~aDvVIi~~~ 76 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SE---LADAQVVILTAG 76 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GG---GTTCSEEEECC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HH---hCCCCEEEEcCC
Confidence 589999999999999999999999 999999999877654332211000 011121 233 23 345999999996
Q ss_pred CCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+. .++++++.+.++ .++.++|..||..
T Consensus 77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 77 ANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 543 235555667776 4777887777754
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=86.24 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=82.4
Q ss_pred CcEEEEcccHHHHHH-HHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNL-ALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~l-A~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.||..+ +..|.+.+++|. ++|+++++.+++.++.. + ..+++++++++. .++|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g------~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG------IGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTT------CSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 489999999999998 888888778765 88999999888776532 2 357889998763 2489999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
...+.+. . .+..|+ ++++. .+..+.+.+++.+..++.|+.+..+.
T Consensus 74 ~h~~~~~-~---al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 74 LHREQTL-A---AIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp GHHHHHH-H---HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred HhHHHHH-H---HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 5443333 2 244566 45542 34556677777777777777665543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-07 Score=96.89 Aligned_cols=116 Identities=9% Similarity=0.183 Sum_probs=85.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHcCCCccchhhHHHHHHHHhhCCCCCCCc
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA---RIWKGGCIIRAVFLDRIKKAYDRNADLANLL 400 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~---~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll 400 (487)
.++++++|++||+++++.|+.++|++.+++++ .++|..++. ..|+.| .++|++++....++.+++.-....
T Consensus 183 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 256 (497)
T 2p4q_A 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKPL 256 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCccH
Confidence 48899999999999999999999999999862 237766555 558888 579999998877666532211233
Q ss_pred CChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 401 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
++...+...+|+++ +|++..|.++|+|+|.+.++++ +++.++.+|
T Consensus 257 vd~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r 303 (497)
T 2p4q_A 257 VEKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNER 303 (497)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhH
Confidence 33333233346666 9999999999999999999984 444444444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=87.31 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
.++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ . ...+++.+++. +.+++ +|+||+
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~ 78 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIV 78 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEE
Confidence 35799999999999999999999998 999999999877643322110 0 01135555666 44444 999999
Q ss_pred ecCCCh--------------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.+. .++++.+.+.+.. ++.++|..||.
T Consensus 79 a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 79 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred eCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 983321 2445556666665 67777777763
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=87.33 Aligned_cols=113 Identities=10% Similarity=0.067 Sum_probs=77.2
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~-~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||. .++..|.+. +++|.++|+++++.+++.++.. +.. +.+..+++. +++|+|++|+|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46999999999998 499988775 6788899999999988876542 222 334444442 249999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
....+.+.. . +..|+ ++++- .+..+.+.+++.+..++.|+.+..
T Consensus 74 ~~h~~~~~~-a---l~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 74 DVHSTLAAF-F---LHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp GGHHHHHHH-H---HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHH-H---HHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 754443333 2 34565 56653 345556777777777777765543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.4e-07 Score=90.59 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=86.1
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
+|.+ |||.|||+|.+|+.++..|++ .++|.+.|++.++++.+.+.... +.. ..+.+++.+.++++|+||.|+
T Consensus 13 ~g~~-mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~-----~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 13 EGRH-MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATP-----LKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp ---C-CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEE-----EECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCCc-cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCc-----EEEecCCHHHHHHHHhCCCEEEEec
Confidence 4444 589999999999999999876 58999999999988876543211 111 234555544455699999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
|.. .-..+++.. +..|..++|.|-.. ....++.+..++.|+.++ ++++..|..
T Consensus 86 p~~-~~~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~~ 139 (365)
T 3abi_A 86 PGF-LGFKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGLS 139 (365)
T ss_dssp CGG-GHHHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred CCc-ccchHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCchH
Confidence 975 334454443 45788999987544 455566777778888777 567666543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-07 Score=89.12 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=67.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHH--HH-Hhhhhc-CCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDE--TV-ERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~-~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
.+|||+|||+|.||..+|..|+.+|+ +|+++|+++++++. +. ..+... +..++...++.+ .++ ++|+||+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR---DADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT---TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC---CCCEEEE
Confidence 45799999999999999999999999 99999999877752 21 121100 000122222433 333 4999999
Q ss_pred ecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+++.+. .+++++..+.+. .++.+||..+|..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 996542 122566667664 6788888888754
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.8e-07 Score=93.88 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=76.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|+.+...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++.+...+
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 326 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI 326 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChhhhc
Confidence 4799999999999999999999999999999998754433322 22 4578888876 99999997443222
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWY-ENTERREK 120 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~ 120 (487)
. .+.+..+++|.+|||+++... -+...+.+
T Consensus 327 ~---~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 327 K---LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp C---HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred C---HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 1 355677899999999999987 36666655
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.7e-07 Score=76.30 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~vp~ 83 (487)
++++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.+.. -+.. ..+.+.+.+ .++.+|+||.+++.
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 34579999999999999999999999999999999887665433211 0111 123333322 13459999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+......+......+.+..+|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 81 NIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred chHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 52333233333444555555554443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.5e-07 Score=94.94 Aligned_cols=116 Identities=17% Similarity=0.300 Sum_probs=86.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHcCCCccchhhHHHHHHHHhh-CCCCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---ARIWKGGCIIRAVFLDRIKKAYDR-NADLANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iw~~Gcii~s~ll~~~~~~~~~-~~~~~~l 399 (487)
.++++++|++||++++..++.++|++.+++++ .+++..++ +..|+.| .+.|++++....++.+ +......
T Consensus 179 ~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----~Gl~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~g~~ 252 (474)
T 2iz1_A 179 NGAGHYVKMVHNGIEYGDMQLIAESYDLLKRI-----LGLSNAEIQAIFEEWNEG-ELDSYLIEITKEVLKRKDDEGEGY 252 (474)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHTTCBCSSSSSB
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCC-CccccHHHhhhhHhhcCCCCCChh
Confidence 47899999999999999999999999999862 23666555 4558888 5789999988787653 3221124
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
.++...+...+++++ +|++..|.++|+|+|.+.+++. +++.++.+|
T Consensus 253 ~vd~i~D~~~~k~tG--~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r 300 (474)
T 2iz1_A 253 IVDKILDKAGNKGTG--KWTSESALDLGVPLPLITESVFARYISTYKDER 300 (474)
T ss_dssp GGGGBCSCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhcccchH--HHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhh
Confidence 444444344556667 9999999999999999999974 555555444
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=87.72 Aligned_cols=113 Identities=13% Similarity=0.245 Sum_probs=81.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.||..++..|. + .+++|. ++|+++++++++.++... ....+++++++++. .+.|+|++|+|+.
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 98 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITASNE 98 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 48999999999999999998 4 367766 799999999888776421 14578899999874 3489999999988
Q ss_pred hhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
...+.+... +..|+ ++++- -+..+.+.+++.+..++.|..+
T Consensus 99 ~h~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 99 AHADVAVAA----LNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp GHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHH----HHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 655544332 34555 44442 2445567777777777777644
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=80.70 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=72.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~~ 85 (487)
|||.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+..... -+.. ..+.+.+.+ .++++|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 6899999999999999999999999999999999998876542110 0111 123332222 256699999999886
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.....+..++..+.+...+|-..+. +... +.+...|+..+-.|
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~~~-~~~~----~~l~~~G~d~vi~p 119 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLVND-PGNM----EIFKKMGITTVLNL 119 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCCS-GGGH----HHHHHHTCEECCCH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC-cchH----HHHHHCCCCEEECH
Confidence 3444444444443344444433332 2332 23344566554333
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-08 Score=93.50 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=76.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++.|||+|.||.+++..|++.|. +|+++||++++.+++.+... .....++.+.+.. +|+||.++|.+.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~------~~~~~~~~~~~~~---aDiVInaTp~Gm 187 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN------KINLSHAESHLDE---FDIIINTTPAGM 187 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCE------EECHHHHHHTGGG---CSEEEECCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcc------cccHhhHHHHhcC---CCEEEECccCCC
Confidence 3579999999999999999999999 99999999998776653211 1122334444444 999999998752
Q ss_pred h--HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 86 P--VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 86 ~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
. .+..+ -...+.++.+|+|++.. |..| .+.+..+++|...+
T Consensus 188 ~~~~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~ 230 (277)
T 3don_A 188 NGNTDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIY 230 (277)
T ss_dssp ----CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEE
T ss_pred CCCCcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEe
Confidence 1 11111 12347789999999876 5555 46666778887654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-06 Score=84.81 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=82.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC---c-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++||||||+|.||..++..|.+.+. + |.++|+++++.+++.++... ...++++++++++ .+.|+|++++|
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~tp 75 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI-----PKAYGSYEELAKD-PNVEVAYVGTQ 75 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC-----SCEESSHHHHHHC-TTCCEEEECCC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEEECCC
Confidence 4699999999999999999987643 3 55789999999988876531 1468899999874 34899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+....+.+... +..|+ ++++- -+....+.+++.+..+++|..+..
T Consensus 76 ~~~H~~~~~~a----l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 76 HPQHKAAVMLC----LAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp GGGHHHHHHHH----HHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHH----HhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 88665544332 34565 44442 244556777777777777765543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-07 Score=87.54 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=74.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+|+|||+|.||++++..|++.|. +|+++||++++.+++.+... .....++.+.++. +|+||.++|.+..-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~------~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK------IFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCE------EEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcc------cCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 79999999999999999999998 99999999999877664321 1234566676666 99999999864110
Q ss_pred -HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 -DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 -~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
...+. .+.+.++.+|+|.... +. .+.+..+++|..
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~T---~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-DT---PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-CC---HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-Cc---HHHHHHHHCCCc
Confidence 00111 1235689999999877 32 233444556765
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=84.81 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+|||+|||+|.||.+++..|+..|+ +|.++|+++++++........ . ...+++.+++. +.++ ++|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~---~aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTA---NSDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHC---CCCEEEEc
Confidence 3699999999999999999999997 999999998877653322111 0 01134444565 3344 49999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+. .++++.+.+.+.. ++.+|+..||.
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCc
Confidence 85442 1223445555554 67777777663
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=86.20 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=83.7
Q ss_pred CCCcEEEEcccHHHH-HHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQ-NLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++||||||+|.||. .++..|...+++| .++|+++++.+++.++.. ....+++.+++++. .+.|+|++|+|+
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVIP 76 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSCG
T ss_pred CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCCh
Confidence 357999999999996 6888887788886 589999999888877542 24568899999873 248999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.++. .+..|+ ++++- .+..+.+.+++.+..++.|+.+.
T Consensus 77 ~~h~~~~~~----al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 77 CDRAELALR----TLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 866554443 334566 55553 44556677777777777776544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=92.71 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=74.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||..+|+.+...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++.+...+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccccc
Confidence 4799999999999999999999999999999988753333222 23 3478888877 99999998544322
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCch-hHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYE-NTERR 118 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~ 118 (487)
. .+.+..+++|.+|||++..... +...+
T Consensus 347 ~---~~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 347 N---HDHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp C---HHHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred C---HHHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 1 3456778999999999998763 55444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=90.95 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......+ +. ..+++|+++. +|+|+++..+...+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 4799999999999999999999999999999998766554433 22 4589999887 99999876554322
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCc
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
. .+....+++|.+||+++...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 2 245677899999999998764
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-07 Score=88.18 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=91.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||||||+|.||..++..|.+. ++++ .++|+++++.+++.+. +..+++++++++. .++|+|++++|+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPPA 80 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCGG
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCChH
Confidence 46899999999999999999986 5664 5899999887654432 2457788998852 2389999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEe-cCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGD-CIID-GGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~l 162 (487)
...+. +.. .+..|+ ++++ ..+..+.+.+++.+..++.|+.+..+.... -...+..++++
T Consensus 81 ~h~~~-~~~---al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r---------------~~p~~~~~~~~ 141 (315)
T 3c1a_A 81 THAEI-TLA---AIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL---------------FNPAWEALKAD 141 (315)
T ss_dssp GHHHH-HHH---HHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG---------------GCHHHHHHHHT
T ss_pred HHHHH-HHH---HHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh---------------cCHHHHHHHHH
Confidence 54443 332 244565 5555 345566677777777777777665443211 11245667777
Q ss_pred HHHHhc
Q 011394 163 LLKVAA 168 (487)
Q Consensus 163 l~~ig~ 168 (487)
++.+|.
T Consensus 142 i~~lG~ 147 (315)
T 3c1a_A 142 LTSIGP 147 (315)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 776764
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-07 Score=79.91 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=79.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|+|||+ |.||..++++|.+.||+ +|++|+.+... .. . ++..+.|++|+.+. +|++++++|+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~---~i--~---G~~~~~sl~el~~~---vDlavi~vp~ 80 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE---EL--F---GEEAVASLLDLKEP---VDILDVFRPP 80 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS---EE--T---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC---cC--C---CEEecCCHHHCCCC---CCEEEEEeCH
Confidence 57999999 89999999999999997 77788774211 11 1 35677889888765 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..+.++++++...- .+.+|+..++. .+++.+.++++|+++++
T Consensus 81 -~~~~~v~~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 81 -SALMDHLPEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp -HHHTTTHHHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred -HHHHHHHHHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 47777887776643 34677766554 35667777888999986
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.7e-07 Score=93.36 Aligned_cols=116 Identities=10% Similarity=0.146 Sum_probs=82.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHhhCCCCCCCc
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADLANLL 400 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---w~~Gcii~s~ll~~~~~~~~~~~~~~~ll 400 (487)
.+.++++|++||++.+++++.++|++.++++. .+++..++.++ |+.| .+.|++++.....+.+.+......
T Consensus 176 ~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~-----~G~~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 249 (482)
T 2pgd_A 176 DGAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGLGHKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHL 249 (482)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcCHHHHHHHHHHhcCC-CcCchHHHHHhHHhhccCCCCCee
Confidence 47899999999999999999999999999864 13666655544 8888 468999888777665543222234
Q ss_pred CChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 401 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
++...+...+++++ +|++..|.++|+|+|.+.+++. +...++.+|
T Consensus 250 ld~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r 296 (482)
T 2pgd_A 250 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDER 296 (482)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred ecccccccccccHH--HHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHH
Confidence 44333333345555 9999999999999999987664 334444433
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.2e-06 Score=85.19 Aligned_cols=112 Identities=11% Similarity=0.144 Sum_probs=79.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||||||+|.||...+..|.+. +++|. ++|+++++.+.+ +.. ++..+++++++++. .+.|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 76 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-AQK------GLKIYESYEAVLAD-EKVDAVLIATPND 76 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-HTT------TCCBCSCHHHHHHC-TTCCEEEECSCGG
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-Hhc------CCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 35899999999999999999887 66765 789999987643 221 35678899999873 2489999999987
Q ss_pred hhHHHHHHHHhhcccCCCE-EEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 85 APVDETIKTLSAYMEKGDC-IIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~i-iId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
...+.+.. .+..|+. +++- -+..+.+.+++.+..++.|+.+.
T Consensus 77 ~h~~~~~~----al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 77 SHKELAIS----ALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp GHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHH----HHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 65554433 2345664 4442 24455677777777777776543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-07 Score=88.23 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+++.|||+|.||++++..|++.|.+|+++||++++.+++. +.. +... +.+++. .+|+||.++|.+..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~------~~~~-~~~~l~----~~DiVInaTp~Gm~ 185 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG------CDCF-MEPPKS----AFDLIINATSASLH 185 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT------CEEE-SSCCSS----CCSEEEECCTTCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC------CeEe-cHHHhc----cCCEEEEcccCCCC
Confidence 35899999999999999999999999999999999999888 321 1211 233322 39999999987632
Q ss_pred HHHHH--HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~vl--~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.+..+ +.+...++++.+|+|+... | .|. +.+..+++|...++
T Consensus 186 ~~~~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 186 NELPLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp CSCSSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCCCCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 11111 1222345678999999876 5 443 66667788876543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-07 Score=94.36 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=84.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHcCCCccchhhHHHHHHHHhhCCCCCCCc
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---ARIWKGGCIIRAVFLDRIKKAYDRNADLANLL 400 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll 400 (487)
.++++++|+++|+++++.|+.++|++.+++++. + ++..++ +..|++| .+.|++++...+.+++.+.-....
T Consensus 188 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~l---G--l~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~~~~ 261 (480)
T 2zyd_A 188 DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGL---N--LTNEELAQTFTEWNNG-ELSSYLIDITKDIFTKKDEDGNYL 261 (480)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--CCHHHHHHHHHHHHHT-TTCBHHHHHHHHHHHCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CcccHHHHHHHHHHhcCCCCCcch
Confidence 489999999999999999999999999998731 2 666555 4568888 578999998888875432212234
Q ss_pred CChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcC
Q 011394 401 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRR 445 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~ 445 (487)
++...+...+++++ +|++..|.++|+|+|.+.+++. +++.++.
T Consensus 262 v~~i~D~~~~k~tG--~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~ 306 (480)
T 2zyd_A 262 VDVILDEAANKGTG--KWTSQSALDLGEPLSLITESVFARYISSLKD 306 (480)
T ss_dssp GGGBCCCCCCCSCT--THHHHHHHHHTCCCHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCchHH--HHHHHHHHHcCCCCchHHHHHHHHhhhcchh
Confidence 44434334456777 9999999999999999999975 4444443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-06 Score=84.04 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCCCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 5 KQLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|+||||||+|.||.. ++..+.+. +.+|. ++|++++++++++++... ...++|.++++++ ++.|+|++|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~t 94 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPL 94 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECS
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeC
Confidence 46789999999999986 46666665 56765 789999999998876531 2468899999875 4589999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|+....+-++..+ ..|+-|+.- -+....+.+++.+..++.|+.+.
T Consensus 95 P~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 95 PTSQHIEWSIKAA----DAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp CGGGHHHHHHHHH----HTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred CCchhHHHHHHHH----hcCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 9986655544433 345544431 12334577777777777665443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-07 Score=90.08 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC-----c-------------cccCCHHHHHh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP-----L-------------FGFRDPESFVN 69 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-----~-------------~~~~s~~e~~~ 69 (487)
.||+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-... . ....++++.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999888776432100000 0 00113444444
Q ss_pred hcCCCcEEEEec--CCChhHHHH-HHHHhhcccCCCEEEecCC
Q 011394 70 SIQKPRVIIMLV--KAGAPVDET-IKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 70 ~l~~advIi~~v--p~~~~v~~v-l~~l~~~l~~g~iiId~st 109 (487)
++|+||.++ |.... ..+ -++....+++|.+|||++.
T Consensus 265 ---~aDIVI~tv~iPg~~a-p~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 ---KFDIVITTALVPGRPA-PRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp ---TCSEEEECCCCTTSCC-CCCBCHHHHHTSCTTCEEEETTG
T ss_pred ---cCCEEEECCCCCCccc-ceeecHHHHhcCCCCcEEEEEeC
Confidence 499999986 32111 111 2566777889999999974
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-06 Score=83.98 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=82.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.++.... .....++++++++++ .++|+|++++|+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 81 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPT 81 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCG
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCCh
Confidence 346899999999999999999885 5665 58899999988887654210 013567899998863 238999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
....+.+. ..+..|+.|+.- .+....+.+++.+..++.|+.+..+
T Consensus 82 ~~h~~~~~----~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 82 SLHVEWAI----KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp GGHHHHHH----HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHH----HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 75443332 234567654432 2445566777777777778766543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=86.43 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||.. ++..|.+. +++|. ++|+++++++++.+... ....+++++++++. .+.|+|++|+|+
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 78 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVVMAGPP 78 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEEECSCH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999985 88998876 67766 88999999887765431 24578899999885 236999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 84 GAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
....+.+.. .+..|+.|+ +- -+....+.+++.+..++.|+.+
T Consensus 79 ~~H~~~~~~----al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 79 QLHFEMGLL----AMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHH----HHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 755444332 344565444 32 2344556777777666666544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=89.28 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc------------c------------cCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF------------G------------FRD 63 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~------------~------------~~s 63 (487)
.||+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+... ..+. . ..+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~--~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~ 268 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKF--IAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL 268 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEE--CCCCC-----------------CHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCce--eecccccccccccccchhhhcchhhhhhhHhH
Confidence 5899999999999999999999999999999999888776644210 0000 0 124
Q ss_pred HHHHHhhcCCCcEEEEec--CCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 64 PESFVNSIQKPRVIIMLV--KAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
++++++. +|+||.++ |...+-.-+-++....+++|.+|||++.
T Consensus 269 l~e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 269 VAEHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 5556665 99999986 3211111112567778899999999984
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=87.51 Aligned_cols=109 Identities=15% Similarity=0.233 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+... .... +.+++.. ..||+++.|.... .+
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~-~I 243 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGA-VL 243 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSC-CB
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHH-Hh
Confidence 57999999999999999999999999999999999888776531 2222 3444433 1399999886543 22
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.. ..++.+ ..++|++.++. |.+.++..+.+.++|+.|+.
T Consensus 244 ~~---~~~~~l-g~~iV~e~An~-p~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 244 ND---FTIPQL-KAKVIAGSADN-QLKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp ST---THHHHC-CCSEECCSCSC-CBSSHHHHHHHHHHTCEECC
T ss_pred CH---HHHHhC-CCcEEEeCCCC-CcccHHHHHHHHhCCCEEec
Confidence 21 122334 44666666665 44444566778888886653
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9e-07 Score=77.29 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=76.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|+|||+ |.+|..++.+|.+.||+ +|++|+.. +++ . ++..+.+++|+... +|++++++|+
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i------~---G~~~y~sl~~l~~~---vDlvvi~vp~ 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV------L---GRKCYPSVLDIPDK---IEVVDLFVKP 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE------T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE------C---CeeccCCHHHcCCC---CCEEEEEeCH
Confidence 57999999 79999999999999997 56666653 111 1 35677889988765 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. .+.++++++...- .+.+|+..++. .+++.+.+++.|+++++.
T Consensus 88 ~-~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGp 130 (144)
T 2d59_A 88 K-LTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVAN 130 (144)
T ss_dssp H-HHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEES
T ss_pred H-HHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcC
Confidence 4 7788887776643 34556554432 456777788889998863
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=84.54 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-CcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++||||||+|.||..++..|.+.+ ++|. ++|+++++.+++.+.. ++ ..+++++++++. .++|+|++++|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp 76 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIYVATI 76 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEEECSC
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEECCC
Confidence 3468999999999999999998764 4554 7899999887776643 23 367899999873 23899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+....+.+.. .+..|+ ++++- -+..+.+.+++.+..++.|+.+..+
T Consensus 77 ~~~h~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~ 124 (329)
T 3evn_A 77 NQDHYKVAKA----ALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEA 124 (329)
T ss_dssp GGGHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHH----HHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 8765444333 234565 44442 2445567777777777777765543
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.7e-06 Score=82.97 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCCCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 5 KQLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+++||||||+|.||.. .+..+.+. +++|. ++|++++++++ ... ....+++++++++. .+.|+|++|+
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~-----~~~~~~~~~~ll~~-~~~D~V~i~t 75 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLP-----DVTVIASPEAAVQH-PDVDLVVIAS 75 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCT-----TSEEESCHHHHHTC-TTCSEEEECS
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCC-----CCcEECCHHHHhcC-CCCCEEEEeC
Confidence 34569999999999997 66667665 67775 88999987642 211 25678899999873 3489999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i 130 (487)
|+....+.+.. .+..|+.|+.-- +....+.+++.+..++.|+.+.
T Consensus 76 p~~~H~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 76 PNATHAPLARL----ALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp CGGGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred ChHHHHHHHHH----HHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 98766554433 345666666543 4455667777777777776554
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-06 Score=86.29 Aligned_cols=120 Identities=8% Similarity=0.086 Sum_probs=81.5
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||. .++..|.+. +++| .++|+++++.+++.++.... ..++..+++.+++++. .++|+|++|+|+
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~-~~vD~V~iatp~ 160 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPN 160 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC-CCCCEEEEcCCc
Confidence 46899999999997 899998875 5665 58999999988877653210 0002257789998763 238999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
....+.+.. .+..|+ ++++. .+....+.+++.+..++.|+.+..+
T Consensus 161 ~~h~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 207 (433)
T 1h6d_A 161 SLHAEFAIR----AFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 207 (433)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred hhHHHHHHH----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 765444433 234566 55543 3445566777777777777765543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-06 Score=80.85 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCCCcEEE
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG-DL--PLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~l~~advIi 78 (487)
.+.++||+|||+|.||.++|..|+..|. +|.++|+++++.+.......... .. +.+...+..+.+ +++|+||
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al---~~aDvVi 79 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC---RDADLVV 79 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT---TTCSEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHh---CCCCEEE
Confidence 3456799999999999999999998875 89999999886654322211100 00 122222333333 4499999
Q ss_pred EecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 79 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++++.+. .+.++.+.+.++. ++.+++..||.
T Consensus 80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNP 125 (316)
T 1ldn_A 80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNP 125 (316)
T ss_dssp ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSS
T ss_pred EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCc
Confidence 9976552 2233445555554 66677777763
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.5e-06 Score=80.04 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHH----HHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDET----VERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++.. .+..... ...++..+++ .+.+++ +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 699999999999999999999998 999999999887522 1111100 0012344455 555554 9999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+. .++++.+.+..+ .++.+++..||.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCc
Confidence 75441 122333455555 577888888864
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=81.73 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=82.7
Q ss_pred CCcEEEEccc-HHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLA-VMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG-~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+| .||..++..|.+. +++|. ++|+++++.+++.++. ++..++|++++++. .+.|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4689999999 9999999999876 45655 7899999998887654 25678899999875 348999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
....+.+.. .+..|+.|+ +- -+......+++.+..+++|+.+..
T Consensus 75 ~~H~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 75 QFHCEHVVQ----ASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHH----HHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEE
Confidence 765544433 234565444 32 234456677777777777765543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=80.18 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=81.4
Q ss_pred CCCCcEEEEccc-HHHHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 5 KQLTRIGLAGLA-VMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 5 ~~~~kIgiIGlG-~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.++.||||||+| .||...+..|.+. +++| .++|+++++.+++.++... ...+++.+++++. .+.|+|++|
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~ 89 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLT 89 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEEC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEEEEe
Confidence 445699999999 8999999999876 4565 5889999999888776421 2568899999874 348999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCE-EEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDC-IIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~i-iId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|+....+.+.. .+..|+- +++- -+....+.+++.+..++.|+.+.
T Consensus 90 tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 90 LPVELNLPFIEK----ALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp CCGGGHHHHHHH----HHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred CCchHHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 998755444333 2345654 4442 12344566667776666666543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-06 Score=84.32 Aligned_cols=112 Identities=18% Similarity=0.071 Sum_probs=78.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++.|+|+|.||.+++..|++.|. +|+++||++++.+++.+.....+ ++. ..+.+++.. .+|+||.++|.+.
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~-~~~~~~l~~---~aDiIInaTp~gm 199 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVK-AQAFEQLKQ---SYDVIINSTSASL 199 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEE-EEEGGGCCS---CEEEEEECSCCCC
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--Cee-EeeHHHhcC---CCCEEEEcCcCCC
Confidence 3579999999999999999999996 99999999999998887653211 122 224444433 3999999999874
Q ss_pred hHHHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 86 PVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 86 ~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
..+.. +. ...+.++.+|+|+... |..|. +.+..+++|..
T Consensus 200 ~~~~~~l~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 239 (281)
T 3o8q_A 200 DGELPAID--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCA 239 (281)
T ss_dssp ----CSCC--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCS
T ss_pred CCCCCCCC--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCC
Confidence 32211 11 1346788999999875 44453 44566777875
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=87.12 Aligned_cols=121 Identities=12% Similarity=0.211 Sum_probs=80.0
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
|-+.+...||||||+| +|...+..+.+. ++++. ++|+++++.++++++. ++..++|.+++.++ .|++
T Consensus 1 M~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v 70 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIA 70 (372)
T ss_dssp ------CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEE
T ss_pred CCCCCCCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEE
Confidence 4455566799999999 899888888765 56666 7899999999988764 36678899998775 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
++++|+......-.+-....+..|+-|+.-=-..+.+.+++.+..+++|+.|.-
T Consensus 71 ~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v 124 (372)
T 4gmf_A 71 CIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWI 124 (372)
T ss_dssp EECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEE
Confidence 999998644211111122334566655554444566777777777777776653
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=84.87 Aligned_cols=113 Identities=9% Similarity=0.158 Sum_probs=77.1
Q ss_pred CCcEEEEcccHHHHHHHHH-H-HH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALN-I-AE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~-L-~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|+||||||+|.||..+... + .. .+++|. ++|+++++.+.+.+.. ++..+++++++++. .+.|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCTH 74 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECSC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 4699999999999975444 4 32 367776 8899988763322211 35678899999874 34799999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+.+. ..+..|+.|+.-- +..+.+.+++.+..++.|+.+.
T Consensus 75 ~~~h~~~~~----~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 75 ADSHFEYAK----RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp GGGHHHHHH----HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHH----HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 886655443 3345677666543 4455677777777777776554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=80.60 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCC--CccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDL--PLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~--~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+++||+|||+|.+|.+++..|+..|+ +|.++|+++++++...........+ +++...+..+. ++++|+||+++
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a---~~~aDvVii~~ 82 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD---VKDCDVIVVTA 82 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG---GTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH---hCCCCEEEEcC
Confidence 45799999999999999999999998 9999999988765433222110000 12222222333 44599999999
Q ss_pred CCChh---------------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGAP---------------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+.. ++++.+.+.++ .++.+|+..||.
T Consensus 83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 76531 34455666665 477777777553
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-06 Score=88.30 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=82.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH---HHc-CCCccchhhHHHHHHHHhhCCCCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELAR---IWK-GGCIIRAVFLDRIKKAYDRNADLANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~---iw~-~Gcii~s~ll~~~~~~~~~~~~~~~l 399 (487)
.+.++++|+++|++.+..++.++|.+.++++. + ++..++.+ .|+ .| ...|++++.....+.+.+.-...
T Consensus 178 ~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~~ 250 (478)
T 1pgj_A 178 GGAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGSY 250 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCChh
Confidence 47889999999999999999999999998853 3 66655544 577 77 67899988887777542211113
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
.+|...+...+++++ +|++..|.++|+|+|.+.+++. +++..+.+|
T Consensus 251 ~ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r 298 (478)
T 1pgj_A 251 LTEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER 298 (478)
T ss_dssp GGGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHH
Confidence 333333223345555 9999999999999999999885 444444433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.1e-06 Score=81.65 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHH---HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSK---VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~---~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.++||+|||+|.||..+|..|+.+|+ +|.++|++++. ..++..... .+++.+.++++ ++ +||+||++
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~----~~i~~t~d~~~-l~---~aD~Vi~a 84 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL----PNVEISKDLSA-SA---HSKVVIFT 84 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC----TTEEEESCGGG-GT---TCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC----CCeEEeCCHHH-HC---CCCEEEEc
Confidence 46799999999999999999999999 99999999852 222332111 13555566633 34 49999999
Q ss_pred cCCCh--------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+..+. .+++++.++.++. ++.++|..||.
T Consensus 85 ag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 85 VNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp CCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh
Confidence 73221 1344556666655 77888888884
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-06 Score=86.07 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||..+|+.+...|.+|+++|+++.+.+...+.+ +. ..+++++++. +|+||++++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 4799999999999999999999999999999999877665543 23 3467787776 99999999876433
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCc
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
. .+.+..+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245566889999999998653
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=78.80 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHH----HHhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDET----VERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
++||+|||+|.||.++|..|+..|+ +|.+||+++++++.. .+.....+ ..++..+++. +.++ ++|+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~---~aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIE---GADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHC---CCCEEEEc
Confidence 5699999999999999999999999 999999999876532 22110000 1134444555 4444 49999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+. .++++.+.+..+. ++.+++..||..
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPv 127 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPL 127 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCc
Confidence 75331 1233334555553 777888888743
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-06 Score=82.01 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||||||+|.||..++..|.+. +++|. ++|+++++++. .+. .....+++.+. .++|+|++|+|+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~~ 76 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPSR 76 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCch
Confidence 45899999999999999999874 67777 79999887654 111 11123344333 3499999999976
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~~ 129 (487)
...+.+ ...+..|..|++.... .+....++.+..++.|..+
T Consensus 77 ~h~~~~----~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~ 120 (304)
T 3bio_A 77 EVERTA----LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA 120 (304)
T ss_dssp HHHHHH----HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred hhHHHH----HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 543332 2345678888887542 2233445555556666543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=83.62 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=82.9
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+||||||+ |.||...+..|.+. +++| .++|+++++.+.+.++.... ....+++++++++. .+.|+|++|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I~ 115 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 115 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEc
Confidence 58999999 99999999999986 6775 48899999998887754210 12468899999863 248999999
Q ss_pred cCCChhHHHHHHHHhhcccCC-------CEEEec-CCCCchhHHHHHHHHHHcC-CeEE
Q 011394 81 VKAGAPVDETIKTLSAYMEKG-------DCIIDG-GNEWYENTERREKAMAELG-LLYL 130 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g-------~iiId~-st~~~~~~~~~~~~l~~~g-~~~i 130 (487)
+|+....+.++..+ ..| .++++- -+..+.+.+++.+.+++.| +.+.
T Consensus 116 tp~~~H~~~~~~al----~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 116 VKVPEHYEVVKNIL----EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp SCHHHHHHHHHHHH----HHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred CCcHHHHHHHHHHH----HCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 99876555444333 344 467764 3445667777777777777 6543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=78.82 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHh---hhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVER---AKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+++||+|||+|.+|.+++..|+..|. +|.++|+++++++..... .....+.+++...+..+..+ ++|+||++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~---~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCH---DADLVVIC 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGT---TCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhC---CCCEEEEC
Confidence 34699999999999999999998884 899999998876543221 11000012222223344444 49999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+. .++++.+.+.++ .++.+||..||.
T Consensus 82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 86542 123333555555 577777777653
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-06 Score=85.87 Aligned_cols=90 Identities=8% Similarity=0.089 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|.+|..+|+.|...|.+|+++|+++.+..+....+ +. ..++++++.. +|+|++|..+.
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt~--- 286 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGNK--- 286 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCS---
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCCc---
Confidence 3799999999999999999999999999999997665444332 22 4578888876 99999973322
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCc
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~ 112 (487)
.++ .+....+++|.+||+++...+
T Consensus 287 -~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 287 -NVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp -CSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred -ccCCHHHHHhcCCCcEEEEecCCCc
Confidence 233 245567889999999998754
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=79.23 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=77.8
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.||.. .+..|.+. +++|. ++|+++++.+ +... ....+++++++++. .+.|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 77 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWP-----AIPVVSDPQMLFND-PSIDLIVIPTPN 77 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCS-----SCCEESCHHHHHHC-SSCCEEEECSCT
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 358999999999997 77777765 66765 8899998765 1111 35678899999874 458999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.+... +..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 78 ~~H~~~~~~a----l~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 78 DTHFPLAQSA----LAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp TTHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 8665544433 34565 555433 4455667777777777776544
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=79.82 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=78.4
Q ss_pred CcEEEEcccHHHH-HHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQ-NLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~-~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||||+|.+|. .++..+...+.+|. ++|+++++++++.++.. ....+++++++++. .+.|+|++++|+..
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~~~ 100 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVSSE 100 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCChHH
Confidence 5899999999995 57777777888855 88999999998887642 14578899999874 34899999999875
Q ss_pred hHHHHHHHHhhcccCCCE-EEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 86 PVDETIKTLSAYMEKGDC-IIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~i-iId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
..+.+.. .+..|+- +++- -+....+.+++.+..++.|+.+
T Consensus 101 H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 101 RAELAIR----AMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp HHHHHHH----HHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHH----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 5444333 3345654 4442 1334456666766666666543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=82.48 Aligned_cols=117 Identities=21% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+. ..+++++.+ ..+|+||.++|.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~-~~~~~~~~~--~~~DivIn~t~~~~~ 193 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQ-AVSMDSIPL--QTYDLVINATSAGLS 193 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEE-EEEGGGCCC--SCCSEEEECCCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeE-EeeHHHhcc--CCCCEEEECCCCCCC
Confidence 358999999999999999999999999999999999988876542110 111 123333322 149999999997643
Q ss_pred HHHHHHHH-hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe-EEe
Q 011394 87 VDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLL-YLG 131 (487)
Q Consensus 87 v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~ 131 (487)
. .+. .+ ...+.++.+++|++.....++. ..+..+++|.. +++
T Consensus 194 ~-~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 194 G-GTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C-CCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 1 110 01 0124578999999985433143 44556677776 553
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.4e-06 Score=82.76 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.+|+.+|+.+...|.+|+++|+++.+..+....+ +. ..+++++++. +|+|+++..+..
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~~-- 314 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNKD-- 314 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSSS--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCcc--
Confidence 3799999999999999999999999999999987654433322 22 3478898887 999999875442
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCc
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~ 112 (487)
++ .+.+..+++|.+||+++....
T Consensus 315 --lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 315 --VITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --SBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --ccCHHHHhcCCCCeEEEEcCCCCc
Confidence 23 345567889999999987653
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=81.68 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccC----CHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFR----DPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~----s~~e~~~~l~~advIi~~ 80 (487)
++||||||+|.||...+..|.+. +++| .++|+++++++++.+.....+......++ +.+++++. .+.|+|++|
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~-~~vD~V~i~ 98 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD-KNIDAVFVS 98 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC-TTCCEEEEC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC-CCCCEEEEc
Confidence 35899999999999999999875 6665 48899999988877632111000134566 89998873 348999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|+....+.++. .+..|+.|+ +- -+....+.+++.+..++.|..+.
T Consensus 99 tp~~~h~~~~~~----al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 99 SPWEWHHEHGVA----AMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CCGGGHHHHHHH----HHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHH----HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 998766554443 344566444 42 23445667777777777776544
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-05 Score=81.11 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH------HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS------KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|+|||.|+.|.+-|+||.++|.+|++--|... ..+.+.+.+ ++ +.+++|+++. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-------f~-v~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-------CE-EEEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-------CE-ecCHHHHHHh---CCEEEEeC
Confidence 5899999999999999999999999999887432 223333322 33 4478999988 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
|+. .-..+++.+.|.|++|+++.-..
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~faH 132 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYSH 132 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEESS
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEecC
Confidence 986 45667788999999999987543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=78.09 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CC--CCccccCCHHHHHhhcCCCcEEEE
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GD--LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~--~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+..+||+|||+|.||.++|..|+..|+ +|.++|+++++++......... .. .+++..++..+.++ ++|+||+
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~---~aDvVvi 79 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCK---DADIVCI 79 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGT---TCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhC---CCCEEEE
Confidence 345799999999999999999999997 8999999998876632211100 00 02233333333344 4999999
Q ss_pred ecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++..+. .++++.+.+..+ .++.+++..||.
T Consensus 80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCCh
Confidence 985431 122333445454 467788888874
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=80.96 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=81.5
Q ss_pred CcEEEEcccH---HHHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc----CCCcEE
Q 011394 8 TRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI----QKPRVI 77 (487)
Q Consensus 8 ~kIgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l----~~advI 77 (487)
+||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....++|.+++++.- .+.|+|
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 89 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD---SERCYADYLSMFEQEARRADGIQAV 89 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC---GGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC---cceeeCCHHHHHhcccccCCCCCEE
Confidence 4899999999 9999998888765 6766 5799999999887754210 015788999998741 248999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEE
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i 130 (487)
++|+|+....+.+... +..|+.|+.- -+....+.+++.+..++.|+.+.
T Consensus 90 ~i~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 90 SIATPNGTHYSITKAA----LEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp EEESCGGGHHHHHHHH----HHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCcHHHHHHHHHH----HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9999988665544333 3456655542 23344677777777777776553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-05 Score=77.58 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc----C-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE----G-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~----g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++......... + ..++..+.+. +..+ ++|+||++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~---~aDvVIi~ 80 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLE---NSDVVIVT 80 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHC---CCCEEEEc
Confidence 5799999999999999999999998 9999999998865333221110 0 0123334444 3334 49999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+.+. .++++.+.+..+. |+.+++..||.
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNP 124 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCc
Confidence 75431 1233335555554 67777777764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=80.89 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp 82 (487)
+..++|.|||+|.+|..+++.|.+.|++|++.|+++++++.+.+.+.. -+..-.+-.++.. .++++|+||++++
T Consensus 2 ~~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 2 SHGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 345789999999999999999999999999999999999988765431 0112222233332 2567999999999
Q ss_pred CChhHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 83 AGAPVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++.....++ ..+..+.+. .+|+-..+ + .....+...|+..+-.|
T Consensus 78 ~~~~n~~i~-~~ar~~~p~~~Iiara~~--~----~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 78 DPQTNLQLT-EMVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKPERE 122 (413)
T ss_dssp SHHHHHHHH-HHHHHHCTTCEEEEEESS--H----HHHHHHHHTTCSSCEET
T ss_pred ChHHHHHHH-HHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEEECc
Confidence 864333333 334445555 44443332 1 23344556676654444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-06 Score=84.11 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc----ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF----GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~----~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.... .+. ...++++++.. +|+||.+++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~~ 241 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVLV 241 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCCc
Confidence 589999999999999999999999999999999988877653321 110 12245566665 9999998864
Q ss_pred Chh-HHHH-HHHHhhcccCCCEEEecC
Q 011394 84 GAP-VDET-IKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 84 ~~~-v~~v-l~~l~~~l~~g~iiId~s 108 (487)
+.. ...+ .++..+.+++|.+|||.+
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 421 1111 244556788999999998
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-05 Score=80.55 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=53.4
Q ss_pred CCcEEEEcccHHH--HHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMG--QNLALNIAEK----GFPISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG--~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~----~-g~~~~~~~~s~~e~~~~l~~ad 75 (487)
++||+|||+|.|| .++|..|+.. |++|.+||+++++++........ . ...+++.++++++.++. ||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d---AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---CC
Confidence 4699999999975 6567788754 89999999999987654332110 0 01145666788777666 99
Q ss_pred EEEEecCC
Q 011394 76 VIIMLVKA 83 (487)
Q Consensus 76 vIi~~vp~ 83 (487)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=80.30 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=80.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC---------CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK---------GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~---------G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
.||||||+|.||...+..|.+. +.+|. ++|+++++++++.++... ...+++.++++++ .+.|+|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~vD~V 100 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQVDVV 100 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCCCEE
Confidence 4899999999999999888764 23444 789999999998876531 2568899999875 358999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEE
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i 130 (487)
++|+|+....+-++..+ ..|+-|+.- -+....+.+++.+..++.|..+.
T Consensus 101 ~I~tp~~~H~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAI----AAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp EECSCGGGHHHHHHHHH----HTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EECCCcHHHHHHHHHHH----HcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 99999987665554433 455544432 12344566677776666666543
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.02 E-value=4.2e-06 Score=80.90 Aligned_cols=112 Identities=12% Similarity=0.141 Sum_probs=78.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||+|.||.+++..|.+.|. +|+++||++++.+++.+... .....++. . ..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~--~---~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE--N---QQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT--T---CCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh--c---ccCCEEEECCCCCcc
Confidence 579999999999999999999997 89999999999998876532 11111222 2 249999999997642
Q ss_pred HH---HHHHHH-hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 87 VD---ETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 87 v~---~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.. +.. .+ ...+.++.+++|... .|..| .+.+..+++|..+++..
T Consensus 189 ~~~~~~~~-~~~~~~l~~~~~v~DlvY-~P~~T-~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 189 GGKEEMDL-AFPKAFIDNASVAFDVVA-MPVET-PFIRYAQARGKQTISGA 236 (271)
T ss_dssp TSTTTTSC-SSCHHHHHHCSEEEECCC-SSSSC-HHHHHHHHTTCEEECHH
T ss_pred CccccCCC-CCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCCCEEECCH
Confidence 11 000 00 122456889999986 45555 56667778888876543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-05 Score=64.80 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCc-cc-cCCHHHHHh-hcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPL-FG-FRDPESFVN-SIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~-~~-~~s~~e~~~-~l~~advIi~~vp~ 83 (487)
++|.|+|+|.+|..++..|.+.|++|++.|++ +++.+.+.+.... +..+ .. .++.+.+.+ .++++|.||+++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC--CCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 47999999999999999999999999999998 5666555532211 0011 11 123333322 25679999999987
Q ss_pred ChhHHHHHHHHhhcc-cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYM-EKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+ .....+...+..+ +...+++...+.. .. +.+...|+..+-
T Consensus 82 d-~~n~~~~~~a~~~~~~~~ii~~~~~~~--~~----~~l~~~G~~~vi 123 (153)
T 1id1_A 82 D-ADNAFVVLSAKDMSSDVKTVLAVSDSK--NL----NKIKMVHPDIIL 123 (153)
T ss_dssp H-HHHHHHHHHHHHHTSSSCEEEECSSGG--GH----HHHHTTCCSEEE
T ss_pred h-HHHHHHHHHHHHHCCCCEEEEEECCHH--HH----HHHHHcCCCEEE
Confidence 6 3343344444444 3456776665432 22 233455665443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.5e-05 Score=75.26 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHhhh----hc-CCCCccccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAK----KE-GDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~~~----~~-g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
.+||+|||+|.||.++|..|+..|+ +|.++|++ +++++....... .. ...++..+++.++ ++ ++|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~---~aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TA---DSDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT---TCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hC---CCCEEE
Confidence 4589999999999999999999999 99999999 555443221110 00 0112444445433 33 499999
Q ss_pred EecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 79 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++...+. .++++.+.+..+ .++.+++..||.
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNP 129 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNP 129 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCCh
Confidence 9984331 123333455554 467788888864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=76.01 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=76.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+++.|+|+|.||.+++..|++.|.+|+++||++++++++.+.....+ .+. ..+.+++.+ ..+|+||.++|.+..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~~--~~~DivVn~t~~~~~- 193 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQ-ALSMDELEG--HEFDLIINATSSGIS- 193 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEE-ECCSGGGTT--CCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--Cee-EecHHHhcc--CCCCEEEECCCCCCC-
Confidence 57999999999999999999999999999999999888876532110 111 123333321 249999999987642
Q ss_pred HHHHHHH-hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
..+ ..+ ...+.++.+++|.+.. |..+. ..+..+++|..
T Consensus 194 ~~~-~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 GDI-PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp TCC-CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred CCC-CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 111 001 1235688999999886 44443 44556677765
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=77.11 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=69.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
..+||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....++..+.++++ ++++|+||+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~----~~daDiVIi 95 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV----SAGSKLVVI 95 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS----CSSCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH----hCCCCEEEE
Confidence 45799999999999999999999997 999999999877654321110 00002344556654 334999999
Q ss_pred ecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+...+. .++++.+.+.++ .++.+++..||..
T Consensus 96 taG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv 141 (330)
T 3ldh_A 96 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG 141 (330)
T ss_dssp CCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence 875431 234455666666 6788888888743
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=75.53 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||||+|+|+|.||+.+++.+.+.++++. ++|++++. . . ++..+++++++. . +|+||-+..+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~-~------gv~v~~dl~~l~-~---~DVvIDft~p~- 65 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----T-T------PYQQYQHIADVK-G---ADVAIDFSNPN- 65 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--------C------CSCBCSCTTTCT-T---CSEEEECSCHH-
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----c-C------CCceeCCHHHHh-C---CCEEEEeCChH-
Confidence 6899999999999999999999877665 47988762 1 1 356778888876 5 99998554332
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
.+...+ . +..|.-+|..+|+...
T Consensus 66 a~~~~~----~-l~~g~~vVigTTG~s~ 88 (243)
T 3qy9_A 66 LLFPLL----D-EDFHLPLVVATTGEKE 88 (243)
T ss_dssp HHHHHH----T-SCCCCCEEECCCSSHH
T ss_pred HHHHHH----H-HhcCCceEeCCCCCCH
Confidence 333333 2 6778777778887633
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-05 Score=77.11 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=75.6
Q ss_pred cEEEEcccHHHHHHHHHHHHC--------CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 9 RIGLAGLAVMGQNLALNIAEK--------GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~--------G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
||||||+|.||..-+..+... +.+| .++|+++++++++.++... ...++|.++++++ ++.|+|++
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I 100 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVSV 100 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEEE
Confidence 799999999999877766432 3454 4789999999998876531 2468899999875 45899999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeE
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~ 129 (487)
|+|+....+.++..+ ..|+-|+.- -+....+.+++.+..++.|..+
T Consensus 101 atP~~~H~~~a~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 101 TTPNQFHAEMAIAAL----EAGKHVWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp CSCGGGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred CCChHHHHHHHHHHH----hcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 999987666554443 456544442 1233456667777766766544
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.3e-05 Score=77.85 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=80.3
Q ss_pred CcEEEEcccH---HHHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc----CCCcEE
Q 011394 8 TRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI----QKPRVI 77 (487)
Q Consensus 8 ~kIgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l----~~advI 77 (487)
+||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- .+.|+|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcEE
Confidence 4899999999 9999988888776 5765 6799999999888764210 015788999998741 248999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEE-ecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCII-DGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiI-d~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
++|+|+....+-+.. .+..|+.|+ +-- +....+.+++.+..++.|+.+.
T Consensus 115 ~I~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKE----FLKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp EECSCTTSHHHHHHH----HHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred EECCCcHHHHHHHHH----HHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 999999866544333 344566444 421 3445677777777777776543
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=81.34 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=83.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+||||||+ |.||..++..|.+. +++| .++|+++++.+++.++.... .+..+++++++++. .+.|+|++|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i~ 96 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVIA 96 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEEC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEe
Confidence 58999999 99999999999986 6776 58999999988887753210 12467899999873 248999999
Q ss_pred cCCChhHHHHHHHHhhc--cc-CCCEEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAPVDETIKTLSAY--ME-KGDCIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~--l~-~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|+....+.++..+... .+ ...++++- .+....+.+++.+.+++.|+.+.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 99876555444433221 00 02466663 44556677777777777776554
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=78.47 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+||||||+|.||.. .+..+.+. +++|. ++|++ +.+++.++.... ++..+++++++++. .+.|+|++|+|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp~ 75 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTPA 75 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSCG
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCCc
Confidence 469999999999994 56556554 66765 78988 445555442111 35678899999874 348999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEE-ecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDETIKTLSAYMEKGDCII-DGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+.+... +..|+.|+ +-- +..+.+.+++.+..+++|+.+.
T Consensus 76 ~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 76 HTHYDLAKQA----ILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 7655544333 34565444 321 3345667777777777776554
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=80.67 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
-++|+|||+|.||..+++.|...|. +|+++||++++.+++.+.... ......++.+.+.. +|+||.++|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCC
Confidence 3589999999999999999999998 999999999988776654321 11123456666665 999999998765
Q ss_pred hHH--HHHHH-Hhh-cccCCCEEEecCC
Q 011394 86 PVD--ETIKT-LSA-YMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~--~vl~~-l~~-~l~~g~iiId~st 109 (487)
.+. ..+.. +.+ .-.++.++||.+.
T Consensus 240 ~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 240 PVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 432 23332 211 1124557777764
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.7e-05 Score=79.34 Aligned_cols=73 Identities=11% Similarity=0.235 Sum_probs=55.9
Q ss_pred CcEEEEcccHH--HHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhc--CCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVM--GQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKE--GDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~m--G~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~--g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+||+|||.|.| |.+++..|+. .| +|.+||+++++++......... ...+++.+++++++++. +|+||+
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfVI~ 81 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIVII 81 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEEEE
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEEEe
Confidence 59999999997 5789988886 56 9999999998877654322110 01146678899988887 999999
Q ss_pred ecCCC
Q 011394 80 LVKAG 84 (487)
Q Consensus 80 ~vp~~ 84 (487)
+++.+
T Consensus 82 airvG 86 (450)
T 3fef_A 82 SILPG 86 (450)
T ss_dssp CCCSS
T ss_pred ccccC
Confidence 99754
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=75.87 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=63.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHH----HhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETV----ERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++... +..... ..+.... ++..+..+ ++|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-~~~~~v~~~~~~~a~~---~aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-GFDTRVTGTNDYGPTE---DSDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-TCCCEEEEESSSGGGT---TCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-CCCcEEEECCCHHHhC---CCCEEEEC
Confidence 699999999999999999999887 9999999998765322 211000 0012222 23333344 49999999
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+.+. .++++.+.+..+ .|..+++..||..
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 121 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPL 121 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCch
Confidence 86542 122333445454 4777888888743
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-06 Score=82.16 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHhhccCc-chhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHH
Q 011394 215 GKLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLD 293 (487)
Q Consensus 215 g~i~~~~i~~v~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~ 293 (487)
+ +|.+++.++ |+.|. ++||+++++.+++..+ |. ++.+.+.+.++|+|+|+++.|.+.|+|+|++++|++
T Consensus 259 ~-~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~----p~--~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al~ 328 (358)
T 4e21_A 259 D-LDLADITEV---WRRGSVISSWLLDLSATALLDS----PD--LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALY 328 (358)
T ss_dssp C-CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHC----TT--CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred C-CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhC----CC--hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHHH
Confidence 5 777776555 78876 7999999998887653 21 123344555688999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHhh
Q 011394 294 ARFLSGLKEERVEAAKVF 311 (487)
Q Consensus 294 ~r~~s~~~~~r~~~~~~~ 311 (487)
.|+.|. .+|..+++++
T Consensus 329 ~~~~s~--~~~~~~~~l~ 344 (358)
T 4e21_A 329 ERFSSR--GEDDFANRLL 344 (358)
T ss_dssp HHHHHT--TTTHHHHHHH
T ss_pred HHHHHC--CCcccHHHHH
Confidence 999984 3444444444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=80.13 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=54.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHhhh----hcC-CCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETVERAK----KEG-DLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~~~~----~~g-~~~~~~~~s~~e~~~~l~~adv 76 (487)
+||+|||+|.+ |.++|..|+.. +++|.+||+++++++....... ..+ ..++..+++.++.++. +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66688888887 6799999999998765432111 000 1135566788777776 999
Q ss_pred EEEecCCC
Q 011394 77 IIMLVKAG 84 (487)
Q Consensus 77 Ii~~vp~~ 84 (487)
||+++|.+
T Consensus 106 VViaag~~ 113 (472)
T 1u8x_X 106 VMAHIRVG 113 (472)
T ss_dssp EEECCCTT
T ss_pred EEEcCCCc
Confidence 99999874
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=76.58 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++||||||+|.||.. .+..|.+. +++|. ++|+++++. .+... ....++++++++++ .+.|+|++|+|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp 74 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFP-----DAEVVHELEEITND-PAIELVIVTTP 74 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCT-----TSEEESSTHHHHTC-TTCCEEEECSC
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCC-----CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 3469999999999997 67777665 66765 789998763 22221 25678899999873 34899999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEe-cC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIID-GG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId-~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+.+.. .+..|+.|+. -- +....+.+++.+..++.|+.+.
T Consensus 75 ~~~H~~~~~~----al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 75 SGLHYEHTMA----CIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp TTTHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHH----HHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9866554443 3445665444 21 3445667777777777776544
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.7e-05 Score=74.66 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g--~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+||+|||+|.+|.+++..|+..+. +|.++|+++++++.......... ..+++...+..+..+ ++|+||++.+.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~---~aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK---DADLVVITAGA 82 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGT---TCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhC---CCCEEEECCCC
Confidence 799999999999999999998886 89999999988775433221100 002222223333344 49999999865
Q ss_pred Ch---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .++++.+.+..+ .++.+++..||..
T Consensus 83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 124 (318)
T 1ez4_A 83 PQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (318)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence 42 123333455555 4677777776643
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.2e-05 Score=74.60 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=65.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
||+|||+|.||.+++..|+..|+ +|.++|+++++++........ .. ..+++.+.+. +..+ ++|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~---~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMR---GSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT---TCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhC---CCCEEEEeCC
Confidence 69999999999999999998888 799999998877543322111 00 1134444555 3334 4999999976
Q ss_pred CCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 83 AGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 83 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+. .++++.+.+.++. ++.++|..||.
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 543 1445556666654 67777777773
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.4e-05 Score=79.44 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=78.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++|.|||+|.+|..++..|++. |++|+++||++++++++.+.... .... ..+.+++.+.++++|+||.++|.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~----~~~~~D~~d~~~l~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGS----KAISLDVTDDSALDKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTC----EEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCC----cEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence 46899999999999999999998 78999999999998887754110 0101 12333332222349999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
... ..+... .+..|..++|.+...|. ...+.+.+++.|+.+++
T Consensus 99 ~~~-~~v~~a---~l~~g~~vvd~~~~~p~-~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 99 TFH-PNVVKS---AIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMN 141 (467)
T ss_dssp GGH-HHHHHH---HHHHTCEEEECSCCCHH-HHHHHHHHHHHTCEEEC
T ss_pred hhh-HHHHHH---HHhcCCEEEEeecCCHH-HHHHHHHHHHcCCEEEe
Confidence 532 233322 34568889998764543 44566667777887664
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.1e-05 Score=79.52 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc----ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF----GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~----~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+.... .+. ...++++++.. +|+||.+++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g~ 239 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVLV 239 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCCC
Confidence 689999999999999999999999999999999988776653321 111 12234555555 9999999975
Q ss_pred Ch-hHHHH-HHHHhhcccCCCEEEecCC
Q 011394 84 GA-PVDET-IKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~-~v~~v-l~~l~~~l~~g~iiId~st 109 (487)
+. ....+ .+...+.+++|.+|||.+.
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEec
Confidence 42 11111 2455677788999999984
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.5e-05 Score=81.42 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-------------------------C
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-------------------------R 62 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~-------------------------~ 62 (487)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+.. .... .
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 247 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE-----FLELDFKEEAGSGDGYAKVMSDAFIKAEME 247 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCE-----ECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCE-----EEEecccccccccccchhhccHHHHHHHHH
Confidence 589999999999999999999999999999999988776544321 1100 0
Q ss_pred CHHHHHhhcCCCcEEEEe--cCCChhHHHHH-HHHhhcccCCCEEEecCC
Q 011394 63 DPESFVNSIQKPRVIIML--VKAGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~--vp~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
++++++.. +|+||.+ +|... ...++ ++....+++|.+|||++.
T Consensus 248 ~l~e~~~~---aDvVI~~~~~pg~~-ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 248 LFAAQAKE---VDIIVTTALIPGKP-APKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHH---CSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHhCC---CCEEEECCccCCCC-CCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24555555 9999999 44211 11112 344556788999999985
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=7.6e-05 Score=74.04 Aligned_cols=102 Identities=11% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g--~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+.+||+|||+|.+|.+++..|+..+. +|.++|+++++++.......... ..+++...+..+..+. +|+||++.
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcC
Confidence 45799999999999999999998886 89999999988765433221100 0022232333444454 99999998
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+. .++++.+.+..+ .+..+|+..||..
T Consensus 85 g~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 128 (326)
T 2zqz_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 6542 122333445454 4677777776643
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-05 Score=78.01 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=76.4
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++||||||+|.||.. .+..|.+. +++|. ++|++++++. +... ....+++.+++++. .+.|+|++|+|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp 74 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK---ERYP-----QASIVRSFKELTED-PEIDLIVVNTP 74 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG---TTCT-----TSEEESCSHHHHTC-TTCCEEEECSC
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---HhCC-----CCceECCHHHHhcC-CCCCEEEEeCC
Confidence 3468999999999997 67777765 67765 7899987632 2111 35678899999874 45899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+.+... +..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 75 ~~~H~~~~~~a----l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 75 DNTHYEYAGMA----LEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp GGGHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHH----HHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 87665544333 34565 444422 3455677777777777776554
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.8e-05 Score=73.60 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCCCcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc--CCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 5 KQLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE--GDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 5 ~~~~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~--g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
..++||+|||+ |.+|.++|..++..|. +|.++|+++++++......... ...++..+++..+.+++ +|+||+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT---EEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC---CCEEEE
Confidence 34679999997 9999999999999984 8999999998766532211110 01134556677776666 999999
Q ss_pred ecC
Q 011394 80 LVK 82 (487)
Q Consensus 80 ~vp 82 (487)
+..
T Consensus 83 taG 85 (343)
T 3fi9_A 83 SGG 85 (343)
T ss_dssp CCC
T ss_pred ccC
Confidence 974
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=74.67 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=75.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecC
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp 82 (487)
+.+||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +. .. ++..+.|++|+.+ . +|++++++|
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~--~~---G~~vy~sl~el~~~~~---~D~viI~tP 73 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TT--HL---GLPVFNTVREAVAATG---ATASVIYVP 73 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---ce--eC---CeeccCCHHHHhhcCC---CCEEEEecC
Confidence 4469999998 99999999999998998 44555554210 00 11 3677889999987 5 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~ 131 (487)
+. ...+++.+.... .. +.+|..+++.+ .+.+++.+.+++.|+.+++
T Consensus 74 ~~-~~~~~~~ea~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG 120 (288)
T 2nu8_A 74 AP-FCKDSILEAIDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (288)
T ss_dssp GG-GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 87 455555555442 11 34444555443 3445667777778987764
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8e-05 Score=77.21 Aligned_cols=115 Identities=11% Similarity=0.142 Sum_probs=77.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc----ccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF----GFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~----~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++|.|+|+|.||..++..|++.|++|+++||++++++++.+... ++. -..+.+++.+.++++|+||.++|
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 468999999999999999999999999999999998877654321 011 12233333332334999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..... .+.. ..+.+|..++|.+...+. +..+.+.+++.|+.++.
T Consensus 78 ~~~~~-~i~~---a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 78 YTFHA-TVIK---SAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMN 121 (450)
T ss_dssp --CHH-HHHH---HHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEEC
T ss_pred cccch-HHHH---HHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEe
Confidence 75322 2222 224567888888765543 45666777788887663
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-05 Score=77.00 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=77.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++.|+|+|-+|.+++..|++.|. +|+++||++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm 193 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASL 193 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGG
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCC
Confidence 3579999999999999999999996 999999999999998876431 0 1121 23333321 24999999998763
Q ss_pred hHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 86 PVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 86 ~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
.-+. .+. ...+.++.+|+|+... |..|. +.+..+++|..
T Consensus 194 ~~~~~~i~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 233 (272)
T 3pwz_A 194 TADLPPLP--ADVLGEAALAYELAYG-KGLTP-FLRLAREQGQA 233 (272)
T ss_dssp GTCCCCCC--GGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCC
T ss_pred CCCCCCCC--HHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCC
Confidence 2110 010 1346789999999775 44443 45556677765
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.3e-05 Score=77.52 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccc-------cCCHHHHHhhcCCCcE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFG-------FRDPESFVNSIQKPRV 76 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-------~~s~~e~~~~l~~adv 76 (487)
|+||+|||+|.+|..++..|++.| .+|.++||++++.+++.+.....+..++.. ..+++++++.. ++|+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQI 79 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCE
Confidence 568999999999999999999998 389999999999988876543200000111 12234444431 2799
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh--------HHHHHHHHHHcCCeEEe
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--------TERREKAMAELGLLYLG 131 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--------~~~~~~~l~~~g~~~i~ 131 (487)
||.+.+... ...+++.. +..|..++|.+...+.+ ..++.+.+++.|+.++.
T Consensus 80 Vin~ag~~~-~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 80 VLNIALPYQ-DLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp EEECSCGGG-HHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred EEECCCccc-ChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 999987653 33344333 34677788876543331 12445556666776553
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.3e-05 Score=74.28 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC-CCCccccC--CHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG-DLPLFGFR--DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g-~~~~~~~~--s~~e~~~~l~~advIi~~vp~ 83 (487)
+++.|+|+|-+|.+++..|++.|. +|+++||++++.+++.+...... ...+...+ ++.+.+.. +|+||-++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 479999999999999999999998 69999999999988876543210 00122333 66676666 9999999986
Q ss_pred ChhHHH--HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVDE--TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~~--vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+..-.. .+ -...+.++.+|+|..-. |..| .+.+..+++|...+
T Consensus 205 Gm~~~~~~pi--~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~ 249 (283)
T 3jyo_A 205 GMPAHPGTAF--DVSCLTKDHWVGDVVYM-PIET-ELLKAARALGCETL 249 (283)
T ss_dssp TSTTSCSCSS--CGGGCCTTCEEEECCCS-SSSC-HHHHHHHHHTCCEE
T ss_pred CCCCCCCCCC--CHHHhCCCCEEEEecCC-CCCC-HHHHHHHHCcCeEe
Confidence 521100 01 12346788999998754 3333 23444556676544
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-05 Score=75.66 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=77.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC---------CCcEE-EEeCChHHHH-----H-HHHhhhhcCCCCccccC--CHHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK---------GFPIS-VYNRTTSKVD-----E-TVERAKKEGDLPLFGFR--DPESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~---------G~~V~-v~dr~~~~~~-----~-l~~~~~~~g~~~~~~~~--s~~e~~ 68 (487)
|+||||||+|.||..++..|.+. +.+|. ++|+++++.+ + +...... ...++ ++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~-----~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET-----GMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH-----SSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC-----ccccCCCCHHHHh
Confidence 57999999999999999999875 44554 6688865422 1 2211111 12344 899998
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
++ .+.|+|+.|+|+.....+..+-....+..|..|+..+..... ...++.+..+++|..|+ ++-+.++
T Consensus 77 ~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 77 RS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp HH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred cC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 75 348999999997643111333445667789988877553221 23344555566787655 4444443
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=72.97 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=66.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCccccCCHHHHHhhcCCCcEEEEe
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~--~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+..+||+|||+|.||.++|..|+..|+ +|.++|+++++++........... .+++..++..+..+ ++|+||++
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~---~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAK---DADLVVIT 83 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT---TCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhc---CCCEEEEC
Confidence 346799999999999999999999987 899999999887744332211000 02233333334344 49999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+. .++++.+.+..+ .|+.+++..||.
T Consensus 84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CCCC----------------CHHHHHHHHHTT-TCCSEEEECSSS
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCc
Confidence 75431 123333455554 467788888764
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=72.60 Aligned_cols=100 Identities=10% Similarity=0.186 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g--~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+|.+|.+++..|+..+ .+|.++|+++++++.......... ..+++...+..+.. +++|+||++.+.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~---~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDL---EGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG---TTEEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHh---CCCCEEEECCCC
Confidence 68999999999999999999987 589999999988775433221100 00122222223333 449999998865
Q ss_pred Chh---------------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAP---------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~---------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ++++.+.+.++ .+..+++..||..
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 78 AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 431 23333455555 4667777776643
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.79 E-value=8.6e-05 Score=76.80 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCcEEEEcccHH-HHHHHHHHHHC-----CCcEEEEeCCh--HHHHHHH---Hhhh-hcC-CCCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTT--SKVDETV---ERAK-KEG-DLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~l~---~~~~-~~g-~~~~~~~~s~~e~~~~l~~ 73 (487)
.+||+|||+|.+ |.+++..|+.. +.+|.+||+++ ++++... +... ..+ ..++..+++..+.++.
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 469999999999 88888888874 56899999999 8866532 2110 000 1135556777777776
Q ss_pred CcEEEEecCCC
Q 011394 74 PRVIIMLVKAG 84 (487)
Q Consensus 74 advIi~~vp~~ 84 (487)
+|+||++++.+
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999865
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=74.38 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=79.4
Q ss_pred CCcEEEEc-ccHHHHH-HH----HHHHHCC-CcE----------EEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHH
Q 011394 7 LTRIGLAG-LAVMGQN-LA----LNIAEKG-FPI----------SVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFV 68 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~ 68 (487)
.+|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+++.++.. + ..++++++++
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~------~~~~~~~~~~ll 79 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN------IARWTTDLDAAL 79 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT------CCCEESCHHHHH
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC------CCcccCCHHHHh
Confidence 35899999 9999998 66 6666554 222 499999999998887542 3 4678999998
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i 130 (487)
+. .+.|+|++|+|+..+.+-+.. .+..|+.|+.-- +....+.+++.+..++.|+.+.
T Consensus 80 ~~-~~iD~V~i~tp~~~h~~~~~~----al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 80 AD-KNDTMFFDAATTQARPGLLTQ----AINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp HC-SSCCEEEECSCSSSSHHHHHH----HHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred cC-CCCCEEEECCCchHHHHHHHH----HHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 75 458999999998766554433 345666665421 3344567777777777776544
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=73.75 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=74.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCC--------Cc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 9 RIGLAGLAVMGQNLALNIAEKG--------FP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G--------~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
||||||+|.||...+..+.+.. .+ |.++|+++++++++.++... ...++|.+++++. ++.|+|++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iDaV~I 81 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQLVDV 81 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCSEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEEE
Confidence 6999999999999888877542 24 44789999999988876531 2567899999875 45899999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHH---HHHcCCeE
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKA---MAELGLLY 129 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~---l~~~g~~~ 129 (487)
|+|+..+.+.++..+ ..|+-|+ .- -+....+.+++.+. ..+.|+.+
T Consensus 82 ~tP~~~H~~~~~~al----~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 82 CTPGDSHAEIAIAAL----EAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp CSCGGGHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred eCChHHHHHHHHHHH----HcCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 999987666555443 4555444 31 12233556666333 44445433
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=71.94 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=67.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
..+||+|||+|.||.++|..|+.+|+ +|.++|+++++++......... ....+..+.+.++ ++ ++|+||+
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~---~aDiVvi 93 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TA---NSKLVII 93 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GT---TEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hC---CCCEEEE
Confidence 45799999999999999999999997 8999999998776543322110 0001233455553 33 4999999
Q ss_pred ecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+...+. .++++.+.+..+ .|+.+++..||..
T Consensus 94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 874321 133344556565 5778888888743
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=71.27 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.++++++|+++|.+.++.|+.++|++.+.++ +++|.++++++|+.|. .+|+.++........+...+.
T Consensus 167 ~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p~----- 234 (297)
T 4gbj_A 167 PGAANVIKLAGNFMIACSLEMMGEAFTMAEK------NGISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEPV----- 234 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCSC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCCc-----
Confidence 3789999999999999999999999999875 3499999999999884 588888875555444321110
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
-|.-. -....++-++..|.+.|+|+|....+..+|..
T Consensus 235 ~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 235 AFRFP--LGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp SSBHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cchhH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 11111 11235678889999999999999888876653
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.7e-05 Score=76.14 Aligned_cols=87 Identities=16% Similarity=0.391 Sum_probs=62.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||+|||+|+||+.++..|.+. +.++ .++|+++++ .+. . ++..++++++++. ++|+|++|+|+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-----~---gv~~~~d~~~ll~---~~DvViiatp~~ 69 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-----T---PVFDVADVDKHAD---DVDVLFLCMGSA 69 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-----S---CEEEGGGGGGTTT---TCSEEEECSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-----C---CCceeCCHHHHhc---CCCEEEEcCCcH
Confidence 46899999999999999999887 4564 588998665 221 1 2455677777664 499999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+.+. ..+..|..+++....
T Consensus 70 ~h~~~~~----~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 70 TDIPEQA----PKFAQFACTVDTYDN 91 (320)
T ss_dssp THHHHHH----HHHTTTSEEECCCCC
T ss_pred HHHHHHH----HHHHCCCEEEECCCC
Confidence 5544433 445568888876654
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7e-05 Score=73.17 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=78.6
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHH----CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAE----KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~----~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~ad 75 (487)
|....+++||||||+|.||...+..|.+ .+.++. ++|+++. .+.. ++. ..+++++++. .+.|
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~~------g~~-~~~~~ell~~-~~vD 67 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSLD------EVR-QISLEDALRS-QEID 67 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEET------TEE-BCCHHHHHHC-SSEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHHc------CCC-CCCHHHHhcC-CCCC
Confidence 6555667899999999999999988865 355655 7788641 1111 233 4789999873 2389
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+|++++|+..+.+.+.. .+..|+ ++++- -+..+.+.+++.+..+++|+.+..+.
T Consensus 68 ~V~i~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQ----FLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp EEEECSCGGGHHHHHHH----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCcHhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999998766554443 344566 55553 34456677778887778887765554
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=72.58 Aligned_cols=115 Identities=12% Similarity=-0.006 Sum_probs=76.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--------hcCCCc
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--------SIQKPR 75 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--------~l~~ad 75 (487)
.|+||||||+ |.||...+..|.+.+.++. ++|+++++. .+.+... ....+++.+++.+ .-++.|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD 75 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALD 75 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCc
Confidence 3689999999 7999999999999887654 789998762 2222111 3567889999873 113589
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEE
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|++++|+....+-+... +..|+-|+.- -+..+.+.+++.+..+++|..+.
T Consensus 76 ~V~I~tP~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 76 YVSICSPNYLHYPHIAAG----LRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp EEEECSCGGGHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCcHHHHHHHHHH----HHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 999999987665544333 3345544432 13445667777777777776543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.70 E-value=6.8e-05 Score=75.49 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=68.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|+|+|.+|..++..+...|.+|+++||++++.+.+.+.+... +. ...+.+++.+.+..+|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 5899999999999999999999999999999999998887665321 11 112233333323349999999865431
Q ss_pred -HHH-HHHHHhhcccCCCEEEecCCC
Q 011394 87 -VDE-TIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 -v~~-vl~~l~~~l~~g~iiId~st~ 110 (487)
... +.+...+.++++.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 000 012344567788888888753
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.2e-05 Score=77.01 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCC------------------------
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRD------------------------ 63 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s------------------------ 63 (487)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+.. ....++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~-----~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~ 247 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRKKQ 247 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------CCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----EEeecccccccccccccchhhcCHHHHhhh
Confidence 589999999999999999999999999999999887776553321 110001
Q ss_pred ---HHHHHhhcCCCcEEEEecCCC-hhHHHHH-HHHhhcccCCCEEEecCC
Q 011394 64 ---PESFVNSIQKPRVIIMLVKAG-APVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 64 ---~~e~~~~l~~advIi~~vp~~-~~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
+++++. .+|+||.+++.+ .....++ ++....+++|.+|||.+.
T Consensus 248 ~~~l~~~~~---~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 248 AEAVLKELV---KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHHHHHT---TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHhC---CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEec
Confidence 334444 499999888221 0011111 344566788899999873
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=72.23 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=77.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-------hcCCCcE
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-------SIQKPRV 76 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~-------~l~~adv 76 (487)
.|+||||||+ |.||...+..|.+.+.+|. ++|+++++. .+.+... ....+++.+++.+ +-.+.|+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~ 75 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDY 75 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSE
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcE
Confidence 3679999999 7899999999999887654 789998863 2222111 3567889999872 1145899
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCeEE
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|++|+|+....+-+... +..|+-|+.- -+....+.+++.+..+++|..+.
T Consensus 76 V~I~tP~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 76 LSIASPNHLHYPQIRMA----LRLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp EEECSCGGGHHHHHHHH----HHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred EEECCCchhhHHHHHHH----HHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999987654444333 3456655432 13344667777777777776553
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=70.74 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=62.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+ |.+|.+++..|+..| .+|.++|+++.+. ...+........++.. +++++++.+. +|+||++.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~-~a~dL~~~~~~~~l~~~~~t~d~~~a~~~---aDvVvi~a 76 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADLSHIETRATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHHTTSSSSCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHH-HHHHHhccCcCceEEEecCCCCHHHHhCC---CCEEEECC
Confidence 58999998 999999999999988 6999999987221 1111111000001232 2456666665 99999997
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. .++++.+.+.++. ++.+||..||.
T Consensus 77 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNP 119 (314)
T 1mld_A 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNP 119 (314)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSC
T ss_pred CcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCC
Confidence 5431 2444445555554 55666667663
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=72.42 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=61.2
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCC--CcEEEEeCChHHH--HHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEE
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKG--FPISVYNRTTSKV--DETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVI 77 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G--~~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advI 77 (487)
++|||+||| +|.+|.+++..|+..| ++|.++|++++.. .++.+.... .++.. +++++++++. +|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~---~~v~~~~~t~d~~~al~g---aDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTG---AVVRGFLGQQQLEAALTG---MDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSS---CEEEEEESHHHHHHHHTT---CSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhccccc---ceEEEEeCCCCHHHHcCC---CCEE
Confidence 457999999 8999999999999999 7999999887621 112211100 01222 2244555554 9999
Q ss_pred EEecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IMLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
|++.+.+. .++++++.+...- +..+|+..||.
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNP 127 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNP 127 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSS
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCc
Confidence 99985431 2334445555543 55666666553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=68.47 Aligned_cols=114 Identities=6% Similarity=0.001 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~ 84 (487)
.++|.|+|+|.+|..++..|.+.|+ |+++|+++++++.+. .+... +.. .++.+.+.+ .++++|.||++++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANF----VHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEE----EESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeE----EEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 3589999999999999999999999 999999999887766 32110 111 223333322 256799999999876
Q ss_pred hhHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. ....+...+..+.++ .+|+..++.. .. +.+...|+..+-.|
T Consensus 83 ~-~n~~~~~~a~~~~~~~~iia~~~~~~--~~----~~l~~~G~~~vi~p 125 (234)
T 2aef_A 83 S-ETIHCILGIRKIDESVRIIAEAERYE--NI----EQLRMAGADQVISP 125 (234)
T ss_dssp H-HHHHHHHHHHHHCSSSEEEEECSSGG--GH----HHHHHHTCSEEECH
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEECCHh--HH----HHHHHCCCCEEECH
Confidence 3 333333344445565 6777665542 22 23334577655444
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0006 Score=69.97 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhh-hh------------------cCCCCccccCCHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERA-KK------------------EGDLPLFGFRDPE 65 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~-~~------------------~g~~~~~~~~s~~ 65 (487)
..||||||+|.||..++..+.+. +.+| .++|+++++.+++.++. .. .+ ....+++.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 35899999999999999888764 4554 47899999988876542 10 00 134678999
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh---HHHHHHHHHHcCCeE
Q 011394 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---TERREKAMAELGLLY 129 (487)
Q Consensus 66 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~g~~~ 129 (487)
++++. .+.|+|++++|++..-. +-....+..|+-|+.... +.+ ..++.+..++.|+.|
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H~---e~a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl 161 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVGA---ETGIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIY 161 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHHH---HHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCE
T ss_pred HHhcC-CCCCEEEEcCCChHHHH---HHHHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCee
Confidence 99874 34899999998753212 223344567888875432 222 223344444556544
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.59 E-value=8.9e-05 Score=72.16 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=74.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC----CccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL----PLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~----~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++.|+|+|.||.++|..|++.| +|+++||++++.+++.+.....+.. .+.. .+.. +.+..+|+||.+++.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~---~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLD---VDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTT---CCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHH---HhhCCCCEEEECCCC
Confidence 57999999999999999999999 9999999999888876543210000 0111 1222 223459999999986
Q ss_pred ChhH--HHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPV--DET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+..- +.. +. -...+.++.+++|++.. |..+ .+.+..+++|..++
T Consensus 204 ~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 5321 000 10 02356789999999874 4444 34455566676544
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=72.05 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=75.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-------CCcEE-EEeCChHH------HHHHHHhhhhcCCCCcc-ccCCHHHHHhh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-------GFPIS-VYNRTTSK------VDETVERAKKEGDLPLF-GFRDPESFVNS 70 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-------G~~V~-v~dr~~~~------~~~l~~~~~~~g~~~~~-~~~s~~e~~~~ 70 (487)
++.+|+|||+|.||+.+++.|.+. +.+|. ++|++++. .+++.+.....+ .+. ...+..+++.+
T Consensus 3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g--~~~~~~~d~~e~l~~ 80 (325)
T 3ing_A 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTG--RISDRAFSGPEDLMG 80 (325)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHS--CSCSSBCCSGGGGTT
T ss_pred ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcC--CCCcccCCHHHHhcC
Confidence 346899999999999999999874 33444 56877542 112221111000 011 01156666654
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
.+.|+|+.|+|+....+...+.....+..|..||.++.... ....++.+..+++|..|. ++-+.+|
T Consensus 81 -~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~g 148 (325)
T 3ing_A 81 -EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGG 148 (325)
T ss_dssp -SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeeccc
Confidence 34899999999753334444445566778999987765321 223344555566777654 5555544
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=71.45 Aligned_cols=108 Identities=19% Similarity=0.051 Sum_probs=75.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcC--
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLV-- 401 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~-- 401 (487)
.++++.+|+++|.+.++.|++++|++.+.++. ++|..+++++|+.|. -+|+.++........ ..+...
T Consensus 166 ~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~~ 235 (300)
T 3obb_A 166 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPASR 235 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhccccc
Confidence 37899999999999999999999999998863 499999999999874 467766532110000 000010
Q ss_pred --ChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 402 --DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
++.|.-. -....++.++..|.+.|+|+|..+.+...|...
T Consensus 236 ~~~~~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a 277 (300)
T 3obb_A 236 DYSGGFMAQ--LMAKDLGLAQEAAQASASSTPMGSLALSLYRLL 277 (300)
T ss_dssp TTCSSSBHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCccchHH--HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1122211 123456888899999999999999998766543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00035 Score=71.87 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHC----------CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK----------GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~----------G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
.+|||||+|.||..++..|.++ +.+|. ++|+++++.+.+.. ....+++++++++. .+.|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 4799999999999999877642 34444 77999988766531 13567899999874 34799
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
|++++|......+.+ ...+..|+.|+...... .....++.+..+++|+.+. .+-+.++
T Consensus 82 Vve~tp~~~~h~~~~---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELV---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHH---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHH---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 999998632333332 34456788887544310 1122344555566787763 5555443
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=72.81 Aligned_cols=115 Identities=7% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||||||+|.+|...+..| ..+.+|. ++|+++ ++.+.+.+..... +.+...+++.+++++. .+.|+|++++|+.
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~-~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEM-NIKPKKYNNWWEMLEK-EKPDILVINTVFS 78 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTT-TCCCEECSSHHHHHHH-HCCSEEEECSSHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHc-CCCCcccCCHHHHhcC-CCCCEEEEeCCcc
Confidence 46999999999998888777 6677766 689987 4554444332111 0113578899999874 3489999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEec--CCCCchhHHHHHHHHHHcCCe
Q 011394 85 APVDETIKTLSAYMEKGDCIIDG--GNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~--st~~~~~~~~~~~~l~~~g~~ 128 (487)
...+.+.. .+..|+-|+.- -+....+.+++.+..++.|..
T Consensus 79 ~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 79 LNGKILLE----ALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHH----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 55443333 34456544432 123345666677766666654
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=70.44 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=76.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecC
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp 82 (487)
+.+||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +.. . ++.++.+++|+.+ . +|++++++|
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~i--~---G~~vy~sl~el~~~~~---~Dv~Ii~vp 73 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG---MEV--L---GVPVYDTVKEAVAHHE---VDASIIFVP 73 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE--T---TEEEESSHHHHHHHSC---CSEEEECCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC---ceE--C---CEEeeCCHHHHhhcCC---CCEEEEecC
Confidence 3468999998 99999999999999998 44555544310 000 1 3677889999987 5 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~ 131 (487)
+. .+.++++++...- - ..+|..+++.+. +.+++.+.+++.|+.+++
T Consensus 74 ~~-~~~~~~~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig 120 (288)
T 1oi7_A 74 AP-AAADAALEAAHAG-I-PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (288)
T ss_dssp HH-HHHHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HH-HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 75 5666666655421 1 334445666554 344566667778887764
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=68.76 Aligned_cols=109 Identities=17% Similarity=0.046 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|+|+|-+|++++..|.+.|. +|+++||++++.+++.+.. . ..+.+++.+ + .+|+||-++|.+..
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTST
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCcc
Confidence 579999999999999999999998 9999999999988876532 1 123334333 3 49999999987521
Q ss_pred --HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 --VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 --v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.+. .+ -...+.++.+|+|..-. |..| .+.+..+++|...++
T Consensus 192 ~~~~~~pi--~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 192 PKEGESPV--DKEVVAKFSSAVDLIYN-PVET-LFLKYARESGVKAVN 235 (282)
T ss_dssp TSTTCCSS--CHHHHTTCSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCccCCC--CHHHcCCCCEEEEEeeC-CCCC-HHHHHHHHCcCeEeC
Confidence 000 01 01235688999998754 3333 345556677876553
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=70.08 Aligned_cols=107 Identities=8% Similarity=0.119 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHH-HHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQ-NLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.||. ..+..|.+. +.+|. ++|+++++. ++..+++.+++++...+.|+|++++|+.
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~-------------g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE-------------GVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCT-------------TSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhc-------------CCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 5899999999998 788888876 56654 789986531 2567889999987534689999999976
Q ss_pred hhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEEe
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
...+-+. ..+..|+-|+.-- +....+.+++.+..++.|+.+..
T Consensus 93 ~H~~~~~----~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 137 (330)
T 4ew6_A 93 YRYEAAY----KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA 137 (330)
T ss_dssp HHHHHHH----HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHH----HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 5433332 3344666555322 23445666677777777765543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=74.08 Aligned_cols=90 Identities=11% Similarity=0.040 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++++|+|+|.+|..+|+.|+..|.+|+++|+++.+..+....+. ...+.+++... +|+++.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~--------dv~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL--------QVLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--------EECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC--------ccCCHHHHHHh---cCEEEeCCCChhhh
Confidence 47999999999999999999999999999999988776665431 24467777665 99999887644322
Q ss_pred HHHHHHHhhcccCCCEEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
. ......++++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 2 23456688999999998753
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0003 Score=69.21 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHhhhhcCCCCcc--ccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKKEGDLPLF--GFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~~~--~~~s~~e~~~~l~~advIi~~v 81 (487)
+++.|+|+|-+|++++..|++.|. +|+++||+ .++++++.++.....+..+. ..++.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 479999999999999999999998 89999999 88888887653321000011 1233333322222399999999
Q ss_pred CCChhHH--H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAGAPVD--E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~~~v~--~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.+-.-. . .+. ....++++.+|+|..-. |..| .+.+..+++|...+
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~-P~~T-~ll~~A~~~G~~~~ 283 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYK-PTKT-RLLEIAEEQGCQTL 283 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCS-SSSC-HHHHHHHHTTCEEE
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEe
Confidence 8652100 0 010 12346788999998754 3344 34455567776554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00067 Score=66.05 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=63.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.+|.++|..|..++. ++.+||.++++++-.+..... .. ..++....+.++ ++++|+||++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~----~~~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL----LKGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG----GTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH----hCCCCEEEEe
Confidence 799999999999999999988875 899999998765432221110 00 002233445544 3349999998
Q ss_pred cCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.-.+ .. ++++.+++.++ .++.+++..||..
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPv 121 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM 121 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcc
Confidence 6322 11 23344555555 3667788887753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00015 Score=69.83 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=64.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCcEEE-EeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPISV-YNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~v-~dr~~~~~-----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|+||+|+| +|.||+.+++.+.+. ++++.. +|++++.. .++.. .. .++..+++++++.+. +|+||
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g--~~---~gv~v~~dl~~ll~~---~DVVI 78 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQ---TGVALTDDIERVCAE---ADYLI 78 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT--CC---CSCBCBCCHHHHHHH---CSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC--CC---CCceecCCHHHHhcC---CCEEE
Confidence 67999999 899999999998865 567664 69875421 11110 00 035667899998887 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
-+.++. .+.+.+... +..|.-+|..+|+...
T Consensus 79 DfT~p~-a~~~~~~~a---l~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 79 DFTLPE-GTLVHLDAA---LRHDVKLVIGTTGFSE 109 (272)
T ss_dssp ECSCHH-HHHHHHHHH---HHHTCEEEECCCCCCH
T ss_pred EcCCHH-HHHHHHHHH---HHcCCCEEEECCCCCH
Confidence 988653 444444433 4567777777877644
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00029 Score=68.75 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=76.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~ 83 (487)
..+|.|+|+ |.||..+++++.+.|++ .++..+|.+..+ .. . ++..+.|++|+.+ . +|++++++|+
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~---~i--~---G~~vy~sl~el~~~~~---~Dv~ii~vp~ 80 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQ---NV--H---GVPVFDTVKEAVKETD---ANASVIFVPA 80 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTC---EE--T---TEEEESSHHHHHHHHC---CCEEEECCCH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCc---eE--C---CEeeeCCHHHHhhcCC---CCEEEEccCH
Confidence 357889998 99999999999999998 666666653210 00 1 3678889999987 5 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~ 131 (487)
. .+.++++++... .=+.+|..+++.+. +..++.+.+++.|+.+++
T Consensus 81 ~-~~~~~v~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 126 (294)
T 2yv1_A 81 P-FAKDAVFEAIDA--GIELIVVITEHIPVHDTMEFVNYAEDVGVKIIG 126 (294)
T ss_dssp H-HHHHHHHHHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 5 566666655542 11334445655544 345566677778887764
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00065 Score=67.78 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|++|..+|+.|.+.|.+|+++|+++++ .++.+.. +.+.. +.+++... .||+++-|-... .+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~-~I 244 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGG-VI 244 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSC-CB
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHh-hc
Confidence 58999999999999999999999999999999876 3333322 12222 55666551 389998653222 22
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+-++.+ +.++|++.+|...... +..+.+.++|+.++.
T Consensus 245 ~---~~~~~~l-k~~iVie~AN~p~t~~-eA~~~L~~~gIlv~P 283 (355)
T 1c1d_A 245 T---TEVARTL-DCSVVAGAANNVIADE-AASDILHARGILYAP 283 (355)
T ss_dssp C---HHHHHHC-CCSEECCSCTTCBCSH-HHHHHHHHTTCEECC
T ss_pred C---HHHHhhC-CCCEEEECCCCCCCCH-HHHHHHHhCCEEEEC
Confidence 1 1222334 4689999998764332 335778888876653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=75.05 Aligned_cols=87 Identities=11% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~ 83 (487)
..|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++++.+..... -+....+-.++.. .+++||+++.++.+
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~ 78 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNT 78 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence 458999999999999999999999999999999999999887653210 0222222222222 24569988776665
Q ss_pred ChhHHHHHHHHhh
Q 011394 84 GAPVDETIKTLSA 96 (487)
Q Consensus 84 ~~~v~~vl~~l~~ 96 (487)
+ .+.-+.-.++.
T Consensus 79 D-e~Nl~~~~~Ak 90 (461)
T 4g65_A 79 D-ETNMAACQVAF 90 (461)
T ss_dssp H-HHHHHHHHHHH
T ss_pred h-HHHHHHHHHHH
Confidence 4 33333333333
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00022 Score=70.86 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------C--CcE-EEEeCChHHHHH------HHHhhhhcCCCCcc-ccC---CHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK------G--FPI-SVYNRTTSKVDE------TVERAKKEGDLPLF-GFR---DPESFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~------G--~~V-~v~dr~~~~~~~------l~~~~~~~g~~~~~-~~~---s~~e~~ 68 (487)
+||||||+|.||..++..|.+. | .+| .++|+++++.++ +.+..... .+. .++ ++++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHHh
Confidence 5899999999999999998764 2 455 477988765433 22211100 121 344 899988
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
. .+.|+|+.|+|+....+...+-....+..|+.|+.++... .....++.+..+++|+.|. ++.+.+|
T Consensus 84 -~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~g 152 (331)
T 3c8m_A 84 -A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGG 152 (331)
T ss_dssp -H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 4 3589999999984001112223344567888888654311 1223344555566676553 4444433
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00052 Score=68.25 Aligned_cols=94 Identities=10% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEE-EEeCChHHHHHHHHhhh-h-cCCC----------CccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKVDETVERAK-K-EGDL----------PLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~~~-~-~g~~----------~~~~~~s~~e~~~~l~ 72 (487)
|+||||||+|.||..+++.|.+.. .+|. ++|+++++...+.+... . .+.+ .+....+++++...
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 359999999999999999998764 4554 67888887776665321 0 0000 12345678888765
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEec
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDG 107 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (487)
+|+|++|+|.....+.. . .++..|+.||..
T Consensus 80 -vDvV~~aTp~~~h~~~a-~---~~l~aGk~Vi~s 109 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-P---LYEKAGVKAIFQ 109 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-H---HHHHHTCEEEEC
T ss_pred -CCEEEECCCccccHHHH-H---HHHHcCCceEee
Confidence 99999999987443333 2 334456777743
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=65.42 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCC----hHHHHHHHHhhhhcC-CC--CccccCCHHHHHhh
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRT----TSKVDETVERAKKEG-DL--PLFGFRDPESFVNS 70 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~----~~~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~ 70 (487)
+.|||+|||+ |.+|.+++..|+..|+ +|.++|++ +++++.......... .+ ++...++..+.++.
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 3469999997 9999999999999886 89999999 655543221111100 00 23344566666665
Q ss_pred cCCCcEEEEecCCCh----h-----------HHHHHHHHhhcccCCCEEEecCC
Q 011394 71 IQKPRVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 71 l~~advIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 109 (487)
+|+||++...+. . ++++++.+..+..+..++|..||
T Consensus 84 ---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 84 ---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp ---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 999999864321 1 22333445444335668888876
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00035 Score=67.15 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=51.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+||+|.|+|+|.+|+.++..|.++|++|++.+|++++.+.+...+.. . ...++.++ + ++++|+||.+...
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 46799999999999999999999999999999999888776543321 1 11122221 1 4459999988754
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00023 Score=67.45 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.|+|+++|+|+||+.+++. . ++++. +|+ ++..++ ++..+++++++.+. +|+|+.|.+..
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~~- 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASPE- 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCHH-
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCHH-
Confidence 4799999999999999998 4 88774 667 333222 14567888888755 99999998543
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC---chhHHHHHHHHHHcCCeE-EecCCCCCh
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW---YENTERREKAMAELGLLY-LGMGVSGGE 138 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~---~~~~~~~~~~l~~~g~~~-i~~pvsgg~ 138 (487)
++++. +.+.|..|.-++-+|.+. +...+++.+.+++.|..+ +..+..+|.
T Consensus 72 av~e~---~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~Gl 125 (253)
T 1j5p_A 72 AVKEY---SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGL 125 (253)
T ss_dssp HHHHH---HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCH
T ss_pred HHHHH---HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccch
Confidence 44443 455677898888888763 222234444455556554 456777663
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=3.8e-05 Score=75.46 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=62.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-c-----c--CCHHHHHhhcCCCcEEE
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-G-----F--RDPESFVNSIQKPRVII 78 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~-----~--~s~~e~~~~l~~advIi 78 (487)
.++.|||.|.| |.++|+.|...|.+|+++||+..+..+..+.... ... . + .++++.+.. +|+||
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~----~~~~~t~~~~t~~~~L~e~l~~---ADIVI 250 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKL----NKHHVEDLGEYSEDLLKKCSLD---SDVVI 250 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSC----CCCEEEEEEECCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhh----hcccccccccccHhHHHHHhcc---CCEEE
Confidence 58999999976 9999999999999999999984432111111100 011 1 1 456677776 99999
Q ss_pred EecCCChh-HHHHHHHHhhcccCCCEEEecCCC
Q 011394 79 MLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 79 ~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+.. +. ...+++|.+|||.+..
T Consensus 251 sAtg~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp ECCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ECCCCCcceeC------HHHcCCCeEEEEcCCC
Confidence 99987642 21 1346789999999864
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00052 Score=67.55 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=62.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHH-C-CCcE-EEEeCChHH-HHHHHHhhhhcCCCCcc-ccCCHHHHHhh--cCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAE-K-GFPI-SVYNRTTSK-VDETVERAKKEGDLPLF-GFRDPESFVNS--IQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~-~-G~~V-~v~dr~~~~-~~~l~~~~~~~g~~~~~-~~~s~~e~~~~--l~~advIi~ 79 (487)
++||||||+|.||..++..|.+ . +.++ .++|+++++ ..++.+... +. ..++.+++.+. ..+.|+|++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g------~~~~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG------VTTTYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT------CCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC------CCcccCCHHHHHhccCCCCCcEEEE
Confidence 4689999999999999999966 3 4444 478999887 555554331 22 24566777542 234899999
Q ss_pred ecCCChhHHHHHHHHhhcccC--CCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEK--GDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~--g~iiId~st~ 110 (487)
++|..... +..... +.. |..|++.+..
T Consensus 78 atp~~~h~-~~a~~a---l~a~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 78 ATSASAHV-QNEALL---RQAKPGIRLIDLTPA 106 (312)
T ss_dssp CSCHHHHH-HHHHHH---HHHCTTCEEEECSTT
T ss_pred CCChHHHH-HHHHHH---HHhCCCCEEEEcCcc
Confidence 99965332 232222 334 8888887754
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00049 Score=65.81 Aligned_cols=73 Identities=16% Similarity=0.366 Sum_probs=59.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|+++++. +.++++.+++ +|+||.+++.+..
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------------------t~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------------------TKDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------------------cccHHHhhcc---CCEEEECCCCCcc
Confidence 4799999985 8999999999999999999864 2356677777 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 207 I~------~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGIN 224 (276)
T ss_dssp BC------GGGCCTTCEEEECCCE
T ss_pred cc------HhhccCCcEEEEeccC
Confidence 22 2457899999999865
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=8e-05 Score=69.21 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCcEEEEcccHHHHHHHHH--HHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALN--IAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~--L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.++|+|||+|.+|..+++. +...|+++. ++|.++++....... .++...++++++++. .|++++|+|+
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~eli~~---~D~ViIAvPs 155 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------VPVYNLDDLEQHVKD---ESVAILTVPA 155 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------EEEEEGGGHHHHCSS---CCEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------CeeechhhHHHHHHh---CCEEEEecCc
Confidence 3689999999999999994 445678766 669999876442211 123345677777765 4999999997
Q ss_pred ChhHHHHHHHHh
Q 011394 84 GAPVDETIKTLS 95 (487)
Q Consensus 84 ~~~v~~vl~~l~ 95 (487)
. ...++.+.+.
T Consensus 156 ~-~~~ei~~~l~ 166 (215)
T 2vt3_A 156 V-AAQSITDRLV 166 (215)
T ss_dssp H-HHHHHHHHHH
T ss_pred h-hHHHHHHHHH
Confidence 5 3445555544
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=65.10 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=69.8
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEe-
Q 011394 6 QLTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIML- 80 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~~~~~~s~~e~~-~~l~~advIi~~- 80 (487)
.|++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+++.+.+.. +..-.+++++. .. +|+||.+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~-----v~~g~~~~~l~~~~---~d~vV~Sp 74 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGID-----VYEGFDAAQLDEFK---ADVYVIGN 74 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCE-----EEESCCGGGGGSCC---CSEEEECT
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCE-----EECCCCHHHcCCCC---CCEEEECC
Confidence 3678999999999995 9999999999999999864 345556554321 22223444443 23 8999986
Q ss_pred -cCCCh-hHHHHHH---------HH-hhcccCC-C-EEEecCCCCchhHHHHHHHHHHcCC
Q 011394 81 -VKAGA-PVDETIK---------TL-SAYMEKG-D-CIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 81 -vp~~~-~v~~vl~---------~l-~~~l~~g-~-iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+|.+. .+....+ ++ ...+.++ . +-|-.|++...++.-+...++..|.
T Consensus 75 gi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 75 VAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp TCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 44432 2222221 22 2222222 3 5555666665555555677777664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0017 Score=63.53 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=60.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC--cEEEEeC--ChHHHHHHHHhhhhc--CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNR--TTSKVDETVERAKKE--GDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~l~~~~~~~--g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|+| +|.+|.+++..|+..|+ ++.++|+ ++++++......... -..+++...+..+..+ ++|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~---~aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTA---GSDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGT---TCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhC---CCCEEEEc
Confidence 6899999 99999999999998886 6899999 877654322211110 0001222222233344 49999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+. .++++++.+..+ .+..+|+..||.
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNP 121 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNP 121 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCCh
Confidence 75331 123333445444 456677766553
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=64.68 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHhhhhcCCCCccc--cCCH---HHHHhhcCCCcEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKKEGDLPLFG--FRDP---ESFVNSIQKPRVII 78 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~~~~--~~s~---~e~~~~l~~advIi 78 (487)
+++.|+|+|-+|++++..|++.|. +|+++||+ .++++++.++.....+..+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 89999999 888888776533210000111 2233 344555 99999
Q ss_pred EecCCChhHHHHHHHH---hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 79 MLVKAGAPVDETIKTL---SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
-++|.+..-..- ..+ ...+.++.+|+|.--. |..| .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~-~~~~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN-ESLIGDVSLLRPELLVTECVYN-PHMT-KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT-CCSCCCGGGSCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC-CcccCCHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEEC
Confidence 999976310000 001 1346788999998754 3334 344555677766553
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00088 Score=61.87 Aligned_cols=72 Identities=14% Similarity=0.306 Sum_probs=49.7
Q ss_pred CCc-EEEEc-ccHHHHHHHHHHH-HCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEE
Q 011394 7 LTR-IGLAG-LAVMGQNLALNIA-EKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~k-IgiIG-lG~mG~~lA~~L~-~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi 78 (487)
||| |.|+| .|.+|..+++.|+ +.|++|++.+|+++ +.+++..... ++.. ..+.+++.+.++.+|+||
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 456 99999 6999999999999 89999999999998 7766542221 1111 123333333334478888
Q ss_pred EecCC
Q 011394 79 MLVKA 83 (487)
Q Consensus 79 ~~vp~ 83 (487)
.+...
T Consensus 79 ~~ag~ 83 (221)
T 3r6d_A 79 VGAME 83 (221)
T ss_dssp ESCCC
T ss_pred EcCCC
Confidence 77754
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00096 Score=65.14 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=75.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|.|+|+ |.||..+++++.+.|++ .++..+|.+..+ .. . ++.++.|++|+.+...++|++++++|+.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~---~i--~---G~~vy~sl~el~~~~~~~DvaIi~vp~~- 82 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGS---EV--H---GVPVYDSVKEALAEHPEINTSIVFVPAP- 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC---EE--T---TEEEESSHHHHHHHCTTCCEEEECCCGG-
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCc---eE--C---CEeeeCCHHHHhhcCCCCCEEEEecCHH-
Confidence 357888898 99999999999999998 556666553200 00 1 3678889999876311289999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG 131 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~ 131 (487)
.+.++++++... .. +.+|..+++.+. +..++.+.+++.|+.+++
T Consensus 83 ~~~~~v~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 127 (297)
T 2yv2_A 83 FAPDAVYEAVDA-GI-RLVVVITEGIPVHDTMRFVNYARQKGATIIG 127 (297)
T ss_dssp GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 566666665553 11 334445655554 345566677778887764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0039 Score=61.20 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=59.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-C--CcEEEEeCChHHHHHHHHhhhhcCCCCcccc----CCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK-G--FPISVYNRTTSKVDETVERAKKEGDLPLFGF----RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~-G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~----~s~~e~~~~l~~advIi~ 79 (487)
|||+||| +|.+|.+++..|... + .++.++|+++ +++......... .+..... ++..+..++ +|+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~-~~~~~v~~~~~~~~~~~~~~---aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI-PTAVKIKGFSGEDATPALEG---ADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS-CSSEEEEEECSSCCHHHHTT---CSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC-CCCceEEEecCCCcHHHhCC---CCEEEE
Confidence 6999999 899999999999875 5 4899999987 322111111110 1111221 234444454 999999
Q ss_pred ecCCCh----h-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...+. . ++++.+.+..+ .++.+++..||.
T Consensus 76 ~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 76 SAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNP 120 (312)
T ss_dssp CCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSC
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 875432 1 22333455554 467788888764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00076 Score=67.62 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC----hHH----HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT----TSK----VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~----~~~----~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
..||.|+|+|.+|..+|+.|...|. +|+++||+ .++ +..+.+.....-+ ......+++|+++. +|++
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-~~~~~~~L~eav~~---ADVl 267 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERLSGDLETALEG---ADFF 267 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCCCSCHHHHHTT---CSEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-ccCchhhHHHHHcc---CCEE
Confidence 4589999999999999999999998 89999998 554 2222222221100 11224578888887 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (487)
|-+..++...+ ++...+.++.+|+++||..|+.+
T Consensus 268 IG~Sap~l~t~----emVk~Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 268 IGVSRGNILKP----EWIKKMSRKPVIFALANPVPEID 301 (388)
T ss_dssp EECSCSSCSCH----HHHTTSCSSCEEEECCSSSCSSC
T ss_pred EEeCCCCccCH----HHHHhcCCCCEEEEcCCCCCCCC
Confidence 88765332233 33444667889999999776544
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00067 Score=66.46 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=75.8
Q ss_pred CcEEEE-cc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011394 8 TRIGLA-GL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiI-Gl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~ 83 (487)
.+|+|| |+ |.+|...+++|.+.|++ .+|+.||.+.. +.. . ++.+..+++|+.+ . +|++++++|+
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~i--~---G~~vy~sl~el~~~~~---vD~avI~vP~ 81 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KTH--L---GLPVFNTVKEAKEQTG---ATASVIYVPP 81 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE--T---TEEEESSHHHHHHHHC---CCEEEECCCH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ceE--C---CeeeechHHHhhhcCC---CCEEEEecCH
Confidence 468999 98 99999999999999999 55666665321 000 1 3677889999987 5 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHc-CCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAEL-GLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~-g~~~i~ 131 (487)
. .+.++++++... .- +.++..+.+.+. +..++.+.+++. |+.+++
T Consensus 82 ~-~~~~~~~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG 128 (305)
T 2fp4_A 82 P-FAAAAINEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128 (305)
T ss_dssp H-HHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred H-HHHHHHHHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence 6 566666665543 12 344445555443 344666777778 888764
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0028 Score=63.04 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=60.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEE-EEeCChHHHHHHHHhhhhc--C---------CCCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKVDETVERAKKE--G---------DLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~~~~~--g---------~~~~~~~~s~~e~~~~l~~ 73 (487)
|.||||+|+|.||+.+++.|.++. .+|. +.|++++....+....... . ..++....+++++...
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~--- 77 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT--- 77 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---
Confidence 358999999999999999998764 4554 6688876655554431100 0 0011122344555445
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||.|+|... ..+... .++..|..+|+.|..
T Consensus 78 vDvV~~aTp~~~-s~~~a~---~~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 78 SDIVVDTTPNGV-GAQYKP---IYLQLQRNAIFQGGE 110 (340)
T ss_dssp CSEEEECCSTTH-HHHHHH---HHHHTTCEEEECTTS
T ss_pred CCEEEECCCCch-hHHHHH---HHHHcCCeEEEeCCC
Confidence 899999998763 233332 234567778888765
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00033 Score=70.28 Aligned_cols=99 Identities=14% Similarity=0.281 Sum_probs=57.4
Q ss_pred CCCCCCC-CcEEEEc-ccHHHHHHHHHHHHCC-CcEEEEeCChH----HHHHHHHh--------hhhcCCCCcccc-CCH
Q 011394 1 MVEGKQL-TRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTS----KVDETVER--------AKKEGDLPLFGF-RDP 64 (487)
Q Consensus 1 ~~~~~~~-~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~----~~~~l~~~--------~~~~g~~~~~~~-~s~ 64 (487)
|.++++| +||+|+| .|.+|..+.+.|.++. ++|...++++. .++..... +.. .+... .++
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIK----DMVVIPTDP 76 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHH----TCBCEESCT
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCce----eeEEEeCCH
Confidence 6566644 5899999 8999999999998775 57776643321 12211100 000 11111 245
Q ss_pred HHHHh-hcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 65 ESFVN-SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 65 ~e~~~-~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.+ . +|+||+|+|.. ...+....+ +..|..|||.|+.
T Consensus 77 ~~~~~~~---~DvV~~atp~~-~~~~~a~~~---~~aG~~VId~s~~ 116 (354)
T 1ys4_A 77 KHEEFED---VDIVFSALPSD-LAKKFEPEF---AKEGKLIFSNASA 116 (354)
T ss_dssp TSGGGTT---CCEEEECCCHH-HHHHHHHHH---HHTTCEEEECCST
T ss_pred HHHhcCC---CCEEEECCCch-HHHHHHHHH---HHCCCEEEECCch
Confidence 55444 4 99999999875 334444433 4578889999875
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00078 Score=65.26 Aligned_cols=75 Identities=16% Similarity=0.320 Sum_probs=57.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|.+.|.+|+++++....++ +++.+++ +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l~~~~~~---ADIVI~Avg~p~~ 223 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------MIDYLRT---ADIVIAAMGQPGY 223 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------HHHHHHT---CSEEEECSCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------hhhhhcc---CCEEEECCCCCCC
Confidence 4799999877 899999999999999999997432111 1155565 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 224 I~------~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 224 VK------GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp BC------GGGSCTTCEEEECCCE
T ss_pred Cc------HHhcCCCcEEEEEecc
Confidence 22 2457899999999864
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00098 Score=64.50 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC-CCcEE-EEeCChHH-----HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSK-----VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~-----~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
.++||+|+| +|.||+.+++.+.+. ++++. ++|+++.. +.++.... ..++.++++++++... +|+|
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~----~~gv~v~~dl~~ll~~---aDVv 92 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD----FLGVRITDDPESAFSN---TEGI 92 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS----CCSCBCBSCHHHHTTS---CSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC----cCCceeeCCHHHHhcC---CCEE
Confidence 346899999 999999999998754 66755 56887532 11111100 1246778899998776 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
|-+.++. .+.+.+ ...+..|.-+|.++|+....
T Consensus 93 IDFT~p~-a~~~~~---~~~l~~Gv~vViGTTG~~~e 125 (288)
T 3ijp_A 93 LDFSQPQ-ASVLYA---NYAAQKSLIHIIGTTGFSKT 125 (288)
T ss_dssp EECSCHH-HHHHHH---HHHHHHTCEEEECCCCCCHH
T ss_pred EEcCCHH-HHHHHH---HHHHHcCCCEEEECCCCCHH
Confidence 9877543 333333 33455688888888886543
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00067 Score=57.07 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=74.4
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|+|||+ +..|..+.++|.+.||+|+-.|+..+.+. +.....|++|+-. .|++++++|
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~dlp~----vDlavi~~p 67 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVL------------GKTIINERPVIEG----VDTVTLYIN 67 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEET------------TEECBCSCCCCTT----CCEEEECSC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCC------------CeeccCChHHCCC----CCEEEEEeC
Confidence 457999997 67999999999999999998887644321 2456777776543 799999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+. .+.++++++...- ...+|+..+.. .+++.+.+++.|+++++
T Consensus 68 ~~-~v~~~v~e~~~~g-~k~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 68 PQ-NQLSEYNYILSLK-PKRVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp HH-HHGGGHHHHHHHC-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred HH-HHHHHHHHHHhcC-CCEEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 75 6777787776643 23466544432 24666777888999884
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0002 Score=69.15 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=59.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHH-CCCcEE-EEeCChHHH--HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTSKV--DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~--~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+|||+|+|+ |.||+.++..+.+ .|++|. ++|+++++. ..+.+..... ..++...++++++++. +|+||-+.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~~---~DvVIDft 80 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKDD---FDVFIDFT 80 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTTS---CSEEEECS
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhcC---CCEEEEcC
Confidence 469999998 9999999998874 577777 789876431 0000000000 0123446677776654 99999555
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
++. ...+.+. ..+..|.-+|..+|+..
T Consensus 81 ~p~-~~~~~~~---~a~~~G~~vVigTtG~~ 107 (273)
T 1dih_A 81 RPE-GTLNHLA---FCRQHGKGMVIGTTGFD 107 (273)
T ss_dssp CHH-HHHHHHH---HHHHTTCEEEECCCCCC
T ss_pred ChH-HHHHHHH---HHHhCCCCEEEECCCCC
Confidence 432 3444443 33456777777776543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.004 Score=59.10 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (487)
++|.|||+|.+|..++.+|++.|. +|+++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999997 899999987
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.033 Score=52.83 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=103.7
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 57 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+++++++..|+++. +|++|+-+|-+.....+++.+++++++|.+|.++.|.+|..--...+.+..+.+.+..+...+
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57788889999987 999999999998788899999999999999999999987766555555554456555542211
Q ss_pred ChhhhcCCCcccc-C-CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011394 137 GEEGARHGPSLMP-G-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 137 g~~~a~~G~~i~~-g-g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~ 214 (487)
.++. .|.++.. + .+++..+++.+|.++.+.. .+.+-..=.+...-|. ..+.+...+.+.+-+....+.
T Consensus 205 -VPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~-------ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vtkI 274 (358)
T 2b0j_A 205 -VPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGK-------AFKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVTKI 274 (358)
T ss_dssp -CTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSC-------EEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCC-CCccccccccCCHHHHHHHHHHHHHhCCC-------eEecchhhccchhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111 4553332 2 3889999999999999876 2444323333333332 244555677777777777665
Q ss_pred CCCCHH
Q 011394 215 GKLTNE 220 (487)
Q Consensus 215 g~i~~~ 220 (487)
-|.+.+
T Consensus 275 lgAP~~ 280 (358)
T 2b0j_A 275 LGAPAD 280 (358)
T ss_dssp SCCCHH
T ss_pred hcCcHH
Confidence 545544
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.014 Score=55.12 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=59.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|||+|+|+ |.||+.++..+.+. +++|. ++|++. +++++.. ..+|+||-+.++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~--~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHH--TTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhc--cCCcEEEEccChH
Confidence 58999996 99999999998865 89887 556541 2333333 1289999666544
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHH-HHHHHHHHc-CCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTE-RREKAMAEL-GLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~-~~~~~l~~~-g~~~i~~p 133 (487)
.+...+... +..|.-+|.++|+...... ++.+..++. ++..+-+|
T Consensus 57 -a~~~~~~~a---~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~ 103 (245)
T 1p9l_A 57 -VVMGNLEFL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 103 (245)
T ss_dssp -THHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred -HHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence 455544433 4467767777776544322 223333322 56555454
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0016 Score=62.55 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=57.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+++ +|+||.+++.+..
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 4799999887 79999999999999999998642 245566666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 218 I~------~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp BC------GGGSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEeccc
Confidence 22 2457899999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=63.10 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=58.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|+++++.. .++++.+++ +|+||.+++.+..
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 4799999996 69999999999999999997543 356666676 9999999987642
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 216 I~------~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEccCC
Confidence 21 1346899999999865
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0016 Score=63.02 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=58.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|++++++ +.++++.++. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------------------t~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------------------TAHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------------------cccHHHHhcc---CCEEEECCCCccc
Confidence 4799999995 7999999999999999999854 2356666666 9999999988643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 22 13467999999998754
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=62.83 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=58.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.++. +|+||.+++.+..
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 4799999887 69999999999999999998642 245666666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 217 I~------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp BC------GGGSCTTEEEEECCCE
T ss_pred CC------HHHcCCCeEEEEeccC
Confidence 22 2457899999999864
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0021 Score=63.90 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhh--hcC----------CCCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAK--KEG----------DLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~--~~g----------~~~~~~~~s~~e~~~~l~ 72 (487)
|+||||+|+|.||+.+++.|.++ +++|. +.|+++.....+..... ..+ +.++....+++++...
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~-- 78 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE-- 78 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT--
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC--
Confidence 45899999999999999999874 45664 46777665554443210 000 0012222356666655
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||.|+|.... .+..... +..|..|||.+..
T Consensus 79 -vDvV~~atp~~~~-~~~a~~~---l~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 -ADIVIDCTPEGIG-AKNLKMY---KEKGIKAIFQGGE 111 (337)
T ss_dssp -CSEEEECCSTTHH-HHHHHHH---HHHTCCEEECTTS
T ss_pred -CCEEEECCCchhh-HHHHHHH---HHcCCEEEEecCC
Confidence 9999999998743 3333333 3456678888765
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=58.65 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=48.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||.|+| .|.+|+.++..|++.|++|++.+|++++.+.+. ..... ......+...+.. ..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~--~~~D~~d~~~~~~---~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINI--LQKDIFDLTLSDL---SDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEE--EECCGGGCCHHHH---TTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeE--EeccccChhhhhh---cCCCEEEECCcC
Confidence 5899999 699999999999999999999999998876653 11100 0001111111333 449999998754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00064 Score=63.65 Aligned_cols=73 Identities=8% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
|++|-|.| .|.+|..+++.|++.| ++|.+++|++++.+.+...... +.. ..+.+++.+.++.+|+||.+..
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~-----~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQ-----IIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEE-----EEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcE-----EEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 45788888 7999999999999999 8999999998875432211100 000 1244444444445899988776
Q ss_pred CC
Q 011394 83 AG 84 (487)
Q Consensus 83 ~~ 84 (487)
..
T Consensus 98 ~~ 99 (236)
T 3qvo_A 98 GE 99 (236)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=62.97 Aligned_cols=73 Identities=18% Similarity=0.351 Sum_probs=57.7
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+++.|||.|.| |.++|..|.+. |.+|++++++. .++.+.+++ +|+||.+++.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 47999999976 99999999999 88999997553 245566666 99999999877
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. ...+++|.+|||.+..
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEE
T ss_pred cccC------HHHcCCCcEEEEccCC
Confidence 4221 2346789999999864
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00093 Score=66.32 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCcEEEEeCCh---HHHHHHHHhhhh-cCCCCccccC--CHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTT---SKVDETVERAKK-EGDLPLFGFR--DPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~---~~~~~l~~~~~~-~g~~~~~~~~--s~~e~~~~l~~advIi 78 (487)
|+||+|+| .|.+|..+.+.|.++ .+++.....+. ..-+.+.+.... .+........ +.+++.+. +|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~---~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPG---VDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTT---CSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcC---CCEEE
Confidence 67999999 699999999999985 45777653332 211122211100 0000122222 34444344 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|+|.. ...+....+ +..|..|||.|+-.
T Consensus 81 ~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 999975 334444433 45789999999875
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.021 Score=55.50 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=76.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++++.| ..+|++++.....+.+.+ .. +
T Consensus 172 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~-~~-----~ 238 (303)
T 3g0o_A 172 PGAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGD-YT-----P 238 (303)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTC-CC-----C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCC-CC-----C
Confidence 37789999999999999999999999988753 49999999999987 457888776544433322 11 1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
-|. +......++.++..|.+.|+|+|.+.++...|..
T Consensus 239 ~~~--~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (303)
T 3g0o_A 239 RSA--VDIFVKDLGLVADTAKALRFPLPLASTALNMFTS 275 (303)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 111 1122344678999999999999999988876643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0058 Score=56.85 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=51.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.|+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+...+. .. .......++.+. +.++|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~Dl~~~~~~~---~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDI--VVANLEEDFSHA---FASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEE--EECCTTSCCGGG---GTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceE--EEcccHHHHHHH---HcCCCEEEECCCC
Confidence 468999986 999999999999999999999999998887765332 10 000111233333 4459999988754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0025 Score=61.24 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=58.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||.|. +|.++|..|...|.+|+++++.. .++++.+++ +|+||.+++.+..
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 4799999876 89999999999999999997532 245666676 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 22 24578999999998653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0021 Score=59.33 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
.||+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+.... .+.. ..+.+++.+.++++|+||.+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHL------KVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTE------EEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCce------EEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 368999998 699999999999999999999999987654321100 0001 1244444444445899988875
Q ss_pred C
Q 011394 83 A 83 (487)
Q Consensus 83 ~ 83 (487)
.
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.006 Score=63.07 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCC-CcEEEEe-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS----KVDETVERAKKEGDLPLFGFRDPESFVNSIQK-PRVIIML- 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~----~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~-advIi~~- 80 (487)
.++|.|||+|..|.+.|+.|.+.|++|+++|+++. ..+.+.+.+. .+..-..+++... . +|+||++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~---~~~d~vv~sp 80 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLD---EDFCYMIKNP 80 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGG---SCEEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhc---CCCCEEEECC
Confidence 36899999999999999999999999999998642 3444544332 1222223333322 3 7888886
Q ss_pred -cCCChh-HHHHHH---------HHhhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 81 -VKAGAP-VDETIK---------TLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 81 -vp~~~~-v~~vl~---------~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
+|.+.. +....+ +++..+.+.. |-|-.|++...++.-+...+...|...
T Consensus 81 gi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~ 141 (451)
T 3lk7_A 81 GIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRG 141 (451)
T ss_dssp TSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 443321 222111 2222223344 444455665555555566777777643
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0031 Score=62.46 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~~ 85 (487)
++|-|+|.|.+|..+++.|.+.|+ |.+.|+++++++ +.+.+... +.. .++.+.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~----i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANF----VHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEE----EESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEE----EEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 479999999999999999999999 999999999998 66533210 111 223333332 2567999999998753
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. .-..-..+..+.+. .++.-..+. ... +.+...|+..+-.|
T Consensus 190 ~-n~~~~~~ar~~~~~~~iiar~~~~--~~~----~~l~~~G~d~vi~~ 231 (336)
T 1lnq_A 190 E-TIHCILGIRKIDESVRIIAEAERY--ENI----EQLRMAGADQVISP 231 (336)
T ss_dssp H-HHHHHHHHHTTCTTSEEEEECSSG--GGH----HHHHHTTCSEEECH
T ss_pred H-HHHHHHHHHHHCCCCeEEEEECCH--HHH----HHHHHcCCCEEECh
Confidence 2 22222333445555 555554432 222 33445566654333
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00036 Score=64.43 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=55.0
Q ss_pred CCcEEEEcccHHHHHHHHHH--HHCCCcEE-EEeCChH-HHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTS-KVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~-~~~~-l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
..+|+|||+|++|..++..+ .+.|+++. ++|.+++ +... ... +.++...++++++++. .+.|.+++|+
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~------GvpV~~~~dL~~~v~~-~~Id~vIIAv 156 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED------GIPVYGISTINDHLID-SDIETAILTV 156 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT------CCBEEEGGGHHHHC-C-CSCCEEEECS
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC------CeEEeCHHHHHHHHHH-cCCCEEEEec
Confidence 45899999999999999873 45577665 5699988 6532 111 1123345566676664 3489999999
Q ss_pred CCChhHHHHHHHHhh
Q 011394 82 KAGAPVDETIKTLSA 96 (487)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (487)
|+. ...++.+.+.+
T Consensus 157 Ps~-~aq~v~d~lv~ 170 (212)
T 3keo_A 157 PST-EAQEVADILVK 170 (212)
T ss_dssp CGG-GHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHH
Confidence 986 44566655553
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.004 Score=57.22 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=36.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
|||.|+|. |.+|+.++..|++.|++|++.+|++++.+.+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 41 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL 41 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc
Confidence 58999986 99999999999999999999999998876653
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.027 Score=55.25 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=78.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
+.++.+|+++|.+.++.+..++|++.+.++. ++|..++.++++.+. .+|++++.....+.+.... +-
T Consensus 193 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~~~~l~~~~~------~g 259 (320)
T 4dll_A 193 GSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGGF-ADSRVLQLHGQRMVERDFA------PR 259 (320)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTST-TCBHHHHTHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccc-ccCHHHHHhhhhhccCCCC------Cc
Confidence 7889999999999999999999999998753 499999999999874 6788887765544433211 11
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
|. +.-....++.++..|.+.|+|+|...++...|..
T Consensus 260 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 295 (320)
T 4dll_A 260 AR--LSIQLKDMRNALATAQEIGFDAPITGLFEQLYAE 295 (320)
T ss_dssp SB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 11 1122345678999999999999999998876654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00025 Score=65.65 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+|.+|..++..+.. .|+++. ++|.++++....... .++...++++++++. +.|.|++|+|+.
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~ell~~--~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG------GVIEHVDLLPQRVPG--RIEIALLTVPRE 151 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT------EEEEEGGGHHHHSTT--TCCEEEECSCHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcC------CeeecHHhHHHHHHc--CCCEEEEeCCch
Confidence 4589999999999999986322 277655 669998876432211 123346677887764 489999999975
Q ss_pred hhHHHHHHHHh
Q 011394 85 APVDETIKTLS 95 (487)
Q Consensus 85 ~~v~~vl~~l~ 95 (487)
...++.+.+.
T Consensus 152 -~~~ei~~~l~ 161 (211)
T 2dt5_A 152 -AAQKAADLLV 161 (211)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 3344544443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0059 Score=59.20 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|||+|-.|..++.+|++.|. +++++|.+.=....+.++.-.....+-.-+....+.+..+ .+++-+.+.+..-.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNIT 115 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccCC
Confidence 589999999999999999999997 8999998763332222211000000011112222322222 26677776654311
Q ss_pred HHHHHHHHhh-----cc---cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSA-----YM---EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~-----~l---~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.+.++.+.. .+ ..-++|||++-.. ..-..+.+.+...++.++.+++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 1122222221 11 4568999998654 333345566677799999888876
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0058 Score=60.78 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=57.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhh--hhcCCC------------CccccCCHHHHHhh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERA--KKEGDL------------PLFGFRDPESFVNS 70 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~--~~~g~~------------~~~~~~s~~e~~~~ 70 (487)
|+||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...|.+ .+....++.++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 35999999999999999999886 46765 4566666655444331 000000 11222233444334
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
+|+|+.|.|.+.. ..... ..++..|..||+.+
T Consensus 82 ---vDiV~eatg~~~s-~~~a~--~~~l~aG~~VI~sa 113 (343)
T 2yyy_A 82 ---ADIVVDGAPKKIG-KQNLE--NIYKPHKVKAILQG 113 (343)
T ss_dssp ---CSEEEECCCTTHH-HHHHH--HTTTTTTCEEEECT
T ss_pred ---CCEEEECCCcccc-HHHHH--HHHHHCCCEEEECC
Confidence 8999999887632 22222 35677788777643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.015 Score=56.09 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=78.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.++|.+.++.+..++|++.+.++. ++|..++.++++.|. ..|++++.....+.+.+....
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~----- 231 (287)
T 3pef_A 164 VGKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAGA-MANPMFALKGGLIRDRNFAPA----- 231 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHHHHHHTTCCCCS-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-cccHHHHHHhhhhhcCCCCCC-----
Confidence 37889999999999999999999999998863 499999999999873 578887776555544321111
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
|. +......++.++..|.+.|+|+|.+.++...|..
T Consensus 232 -~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 232 -FP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp -SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred -Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 11 1122344789999999999999999988776653
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0044 Score=61.46 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeC--ChHHHHHHHHhhhhcCCC----------------Ccccc--CCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNR--TTSKVDETVERAKKEGDL----------------PLFGF--RDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~~~~~g~~----------------~~~~~--~s~ 64 (487)
|+||||+|+|++|+.+++.|.++ +.+|. +.|+ +++....+.+.....+.+ .+... .++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 46766 4464 677766665421110000 01111 245
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.-.-.++|+||.|+|.....+ ....++..|..+|++|..
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e----~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTME----KAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHH----HHGGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHH----HHHHHHhCCCeEEEeccC
Confidence 554100023899999998875432 234566778667777764
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0041 Score=62.31 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCC--CCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGD--LPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~--~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|+| .|.+|+.+.+.|.++.. +|...+...+.-.++...... .+. ..+... + ++..+ ++|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~---~vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFS---TVDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGG---GCSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhc---CCCEEEEcCC
Confidence 5899999 89999999999998764 777665433222222211110 000 011111 1 33223 3999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..... +. ...+ ..|..|||.|+..
T Consensus 92 ~~~s~-~~---a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGTTQ-EI---IKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTTHH-HH---HHTS-CTTCEEEECSSTT
T ss_pred chhHH-HH---HHHH-hCCCEEEECCccc
Confidence 87432 22 2234 6789999999864
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0027 Score=63.32 Aligned_cols=96 Identities=9% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCC-CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~-~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+||+|+| .|.+|+.+.+.|.++.. ++....+..+.-.++........+ ..+. ..++++ +.++|+||+|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEcCCc
Confidence 57999999 79999999999998764 766655433221111110000000 0111 223332 3459999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.. ..+.... ++..|..|||.|+..
T Consensus 79 ~~-s~~~a~~---~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 GV-FAREFDR---YSALAPVLVDLSADF 102 (345)
T ss_dssp TH-HHHTHHH---HHTTCSEEEECSSTT
T ss_pred HH-HHHHHHH---HHHCCCEEEEcCccc
Confidence 73 3333333 345788999999854
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00092 Score=66.24 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---------CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG---------FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G---------~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
++||||||+|.||..++..|.+.. .+| .++|+++++.+.+ . ....++|+++++ . .|+
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~----~-----~~~~~~d~~~ll-~---iDv 69 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI----P-----QELLRAEPFDLL-E---ADL 69 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS----C-----GGGEESSCCCCT-T---CSE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc----C-----cccccCCHHHHh-C---CCE
Confidence 368999999999999999998763 444 4779987653221 0 023566777777 4 999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEec
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDG 107 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (487)
|+.|+|+.....+.. ...+..|+.|+..
T Consensus 70 Vve~t~~~~~a~~~~---~~AL~aGKhVVta 97 (332)
T 2ejw_A 70 VVEAMGGVEAPLRLV---LPALEAGIPLITA 97 (332)
T ss_dssp EEECCCCSHHHHHHH---HHHHHTTCCEEEC
T ss_pred EEECCCCcHHHHHHH---HHHHHcCCeEEEC
Confidence 999999764333333 3345678877764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.004 Score=57.26 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=50.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCC-HHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRD-PESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s-~~e~~~~l~~advIi~~vp~~ 84 (487)
|||.|+| .|.+|..++..|++.|++|++.+|++++.+.+ ..... .... ..+ .+++.+.++++|+||.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~--~~~D-~~d~~~~~~~~~~~~d~vi~~ag~~ 74 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKA--VHFD-VDWTPEEMAKQLHGMDAIINVSGSG 74 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEE--EECC-TTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceE--EEec-ccCCHHHHHHHHcCCCEEEECCcCC
Confidence 5899998 89999999999999999999999998765432 00000 0011 123 555666566789998887643
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0022 Score=66.73 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=47.7
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC------CCcEEEEeCChHHHHHHH---Hhhh-hcC-CCCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGLAVMGQN--LALNIAEK------GFPISVYNRTTSKVDETV---ERAK-KEG-DLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGlG~mG~~--lA~~L~~~------G~~V~v~dr~~~~~~~l~---~~~~-~~g-~~~~~~~~s~~e~~~~l~~a 74 (487)
|||+|||.|..|.+ +...++.. +.+|.++|.++++++... ++.. ..+ ..++..+++.+++.+. |
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 69999999998865 33334432 347999999998865432 1111 110 1246677889988877 9
Q ss_pred cEEEEec
Q 011394 75 RVIIMLV 81 (487)
Q Consensus 75 dvIi~~v 81 (487)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0066 Score=59.17 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 4 GKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 4 ~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|++||+|.|+| .|.+|..++..|++.|++|.+.+|++
T Consensus 1 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 1 GSHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp ---CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 45678999999 59999999999999999999999986
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.018 Score=58.77 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=46.9
Q ss_pred CCcEEEEcccHH-HHHHHHHHHH--C---CCcEEEEeCChHHHHHHHHh---hhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 7 LTRIGLAGLAVM-GQNLALNIAE--K---GFPISVYNRTTSKVDETVER---AKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 7 ~~kIgiIGlG~m-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~l~~~---~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
++||+|||+|.. +..+...|+. . +.+|.++|.++++++..... .... ..++..+++..+.++. ||+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~-~~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhC-CeEEEEeCCHHHHhCC---CCEE
Confidence 579999999985 2222234454 3 56899999999886643221 1110 0134555677676666 9999
Q ss_pred EEecCCC
Q 011394 78 IMLVKAG 84 (487)
Q Consensus 78 i~~vp~~ 84 (487)
|++.-.+
T Consensus 78 iitagvg 84 (417)
T 1up7_A 78 IFQFRPG 84 (417)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9998443
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.021 Score=56.66 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=61.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCCCc
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEG-DL--PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~l~~ad 75 (487)
||+|+|+ |.+|.+++..|+.... ++.+||.++. +++-......... .. ++...+++.+..++ +|
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~---ad 102 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG---VA 102 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT---CS
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC---CC
Confidence 8999996 9999999999998653 7999999864 2232221111000 00 23445666666555 99
Q ss_pred EEEEecCC----Chh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 76 VIIMLVKA----GAP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 76 vIi~~vp~----~~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+||++--. +.. ++++.+.+..+..++.+|+-.||.
T Consensus 103 vVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred EEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 99997532 211 223334555555677777777763
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.017 Score=56.62 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=46.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeC--ChHHHHH----HHHhhhhcCCCCccccC---CHHHHHhhcCCCc
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNR--TTSKVDE----TVERAKKEGDLPLFGFR---DPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~~~~~g~~~~~~~~---s~~e~~~~l~~ad 75 (487)
|||.|+|+ |.+|.+++..|+..|+ ++.++|+ ++++++. +.+..... +.++.... ++.+..+ ++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~-~~~~~i~~~~d~l~~al~---gaD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGT-RSDANIYVESDENLRIID---ESD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTS-CCCCEEEEEETTCGGGGT---TCS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhc-CCCeEEEeCCcchHHHhC---CCC
Confidence 58999999 9999999999998885 6889999 7665432 22211100 00122222 1344444 499
Q ss_pred EEEEecC
Q 011394 76 VIIMLVK 82 (487)
Q Consensus 76 vIi~~vp 82 (487)
+||++.-
T Consensus 77 ~Vi~~Ag 83 (313)
T 1hye_A 77 VVIITSG 83 (313)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999863
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0087 Score=59.31 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEEEE-eC--ChHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPISVY-NR--TTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~-dr--~~~~~~~l~ 47 (487)
+||||+|+|++|+.+++.|.++ +.+|... |+ +++....+.
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll 47 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhh
Confidence 5999999999999999999886 4566644 53 455555554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=57.62 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC--c-----EEEEeCCh--HHHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF--P-----ISVYNRTT--SKVDETVERAKKEG-DL--PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~--~-----V~v~dr~~--~~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~l~~ 73 (487)
.+||+|+| +|.+|.+++..|+..|. + +.++|+++ ++++.......... .+ ++...++..+..++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCC---
Confidence 36899999 89999999999998886 5 99999975 34333222111100 00 12334455555554
Q ss_pred CcEEEEecCCC---------------hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG---------------APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ ..++++++.+..+-.++..++..||.
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999975221 12334445555554444457777763
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0065 Score=54.78 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=47.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~vp 82 (487)
|+|.|+|. |.+|..+++.|++.|++|++.+|++++.+.+... ++.. ..+.+++.+.++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-------PAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-------CSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCC-------ceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 68999986 9999999999999999999999998764321100 1111 1233444343445888887765
Q ss_pred C
Q 011394 83 A 83 (487)
Q Consensus 83 ~ 83 (487)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.039 Score=53.06 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++.+.|. ..|++++.....+.+.+....
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~----- 231 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAGA-MANPMFKGKGQMLLSGEFPTS----- 231 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHHHHHHHTCCCCS-----
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccChHHHhhccccccCCCCCC-----
Confidence 37889999999999999999999999998753 499999999999873 578877766555544321111
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
|. +......++.++..|.+.|+|+|...++...|..
T Consensus 232 -~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 232 -FP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKR 267 (287)
T ss_dssp -SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred -Cc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 11 1223344789999999999999999988776553
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.026 Score=52.45 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=52.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc---CCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF---RDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~---~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+. +... -..++ |.++|+||.++.+
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~------i~~i~~~~~~~d----L~~adLVIaAT~d 101 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQ------LRVKRKKVGEED----LLNVFFIVVATND 101 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTS------CEEECSCCCGGG----SSSCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCC------cEEEECCCCHhH----hCCCCEEEECCCC
Confidence 5899999999999999999999999999987753 3555554431 2221 12222 3449999988766
Q ss_pred ChhHHHHHHHH
Q 011394 84 GAPVDETIKTL 94 (487)
Q Consensus 84 ~~~v~~vl~~l 94 (487)
+ .+...+...
T Consensus 102 ~-~~N~~I~~~ 111 (223)
T 3dfz_A 102 Q-AVNKFVKQH 111 (223)
T ss_dssp T-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 5 555555433
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.03 Score=53.06 Aligned_cols=123 Identities=13% Similarity=0.226 Sum_probs=64.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|.+|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.+..+ .+++-+...+..-
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 107 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL-NPDIQLTALQQRL 107 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999997 888998874222111111000 0000000011111212111 1444455544321
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
. .+.+.++ +..-++||+++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 108 ~-~~~~~~~---~~~~DvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g 153 (251)
T 1zud_1 108 T-GEALKDA---VARADVVLDCTDN-MATRQEINAACVALNTPLITASAVG 153 (251)
T ss_dssp C-HHHHHHH---HHHCSEEEECCSS-HHHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred C-HHHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHhCCCEEEEeccc
Confidence 1 1122222 2244899988753 3333344556667788888765433
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=63.65 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-----C-cEEEEe-C-ChHH-HHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKG-----F-PISVYN-R-TTSK-VDETVERAKKEGDLPLFGF-RDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G-----~-~V~v~d-r-~~~~-~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~ad 75 (487)
|+||+|+| .|.+|+.+.+.|.+++ + +|..+. + +..+ +.......... ..+... .+.+++ .. +|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~--~~~~~~~~~~~~~-~~---~D 82 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL--AHRVVEPTEAAVL-GG---HD 82 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG--TTCBCEECCHHHH-TT---CS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc--ceeeeccCCHHHh-cC---CC
Confidence 46999999 9999999999999887 3 666664 2 2222 21110000000 011111 233333 33 99
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+||+|+|... ..++...+ ..|..|||.|+..
T Consensus 83 vVf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 83 AVFLALPHGH-SAVLAQQL----SPETLIIDCGADF 113 (352)
T ss_dssp EEEECCTTSC-CHHHHHHS----CTTSEEEECSSTT
T ss_pred EEEECCCCcc-hHHHHHHH----hCCCEEEEECCCc
Confidence 9999999874 34443333 5689999999876
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.027 Score=57.12 Aligned_cols=175 Identities=13% Similarity=0.157 Sum_probs=103.2
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAE-KGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~-~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~a 74 (487)
++|+|.|.|+||...++.|.+ .|..|+ +.|. +++.+.++.++.....++ +.+ ..+.+++... +|
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhcC--CC
Confidence 589999999999999999999 999887 5565 677777766542210000 011 1245565432 49
Q ss_pred cEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCChhhhcCCCccccCCC
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPGGS 152 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--vsgg~~~a~~G~~i~~gg~ 152 (487)
|+++-|.....-..+ -.+.+ .-++|+..+|... +.+..+.+.++|+.++.-- .+||..
T Consensus 287 DIliP~A~~n~i~~~----~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~PD~~aNaGGV~------------- 346 (415)
T 2tmg_A 287 DILVPAALEGAIHAG----NAERI-KAKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVT------------- 346 (415)
T ss_dssp SEEEECSSTTSBCHH----HHTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTCHHHH-------------
T ss_pred cEEEecCCcCccCcc----cHHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEChHHHhCCCce-------------
Confidence 999998765432222 22334 5678888888753 4556677889999877432 222221
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
-..++.+ +..... .+- ..-+...+...+...+.+++..+++.| +++.+...++
T Consensus 347 ~s~~E~v----qN~~~~--------~w~--------~e~v~~~l~~~m~~~~~~v~~~A~~~g-~~~~~aA~~~ 399 (415)
T 2tmg_A 347 VSYFEWV----QDLQSF--------FWD--------LDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 399 (415)
T ss_dssp HHHHHHH----HHHTTC--------CCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred EEEEEEE----ecCccc--------cCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 1122222 221110 111 122344445445566778888888888 8877665543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.016 Score=54.82 Aligned_cols=82 Identities=10% Similarity=0.126 Sum_probs=56.2
Q ss_pred CCcEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|.|..+| |.+-+|..+|+.|++.|++|.+.||++++.+++.+++.. +..+-.=+.+.
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~ 59 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN---------------------LFYFHGDVADP 59 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT---------------------EEEEECCTTSH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------------------EEEEEecCCCH
Confidence 3455566 588899999999999999999999998877665543210 11111224455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++++.....+=+++|+...
T Consensus 60 ~~v~~~v~~~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 60 LTLKKFVEYAMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6677777777766666678887654
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.017 Score=58.93 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=74.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~ad 75 (487)
++|+|.|.|++|...|+.|.+.|..|+ +.|+ +.+.+.++.+......++ ..+ ..+.+++... +||
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~~--~~D 312 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWGL--PVE 312 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTTC--CCS
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhcC--CCc
Confidence 589999999999999999999999888 6666 667776666542210000 011 1245565432 499
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+++-|.....-.. +-++.+ .-++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 313 IlvPcA~~n~i~~----~na~~l-~ak~VvEgAN~p--~t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 313 FLVPAALEKQITE----QNAWRI-RARIVAEGANGP--TTPAADDILLEKGVLVVP 361 (440)
T ss_dssp EEEECSSSSCBCT----TTGGGC-CCSEEECCSSSC--BCHHHHHHHHHHTCEEEC
T ss_pred EEEecCCcCccch----hhHHHc-CCcEEEecCccc--cCHHHHHHHHHCCCEEEC
Confidence 9999876442111 122334 567888888875 345566778889998874
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.037 Score=52.52 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=60.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| |.+-+|.++|+.|++.|.+|.++||++++++++.++.... . .+++.+ =|.+.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~----------------g---~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM----------------G---KEVLGVKADVSKK 68 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 57777 5778999999999999999999999999888776643211 0 223322 24556
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++++.....+=+++|+...
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 6788888887777666688888764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=56.77 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|++|.|+|. |.+|..++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 578999985 9999999999999999999999987
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=57.31 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.|+| .|.+|..++..|++.|++|++.+|+++ +.+.+.+... . +..+.. ..+.+++.+.++.+|+||.+..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-~-~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-L-GAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-T-TCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-C-CCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 4899999 599999999999999999999999875 3332211100 0 000111 1234444444445788777764
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=59.60 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-C---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+||.|||+|.||+.++..++++. + +|++.|++.... +..+... .+++-..|.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vd 69 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQIT 69 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEecc
Confidence 468999999999999999999874 4 788888765431 1111111 334444443
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv 134 (487)
+. .+++++. +.+.++++||+.+ .|.....+.+.+.+.|++|+|..+
T Consensus 70 ad-nv~~~l~---aLl~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 70 PQ-NYLEVIG---STLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp TT-THHHHTG---GGCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ch-hHHHHHH---HHhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 33 3444443 3445569999865 344666778888899999999864
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.017 Score=55.79 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~adv 76 (487)
||+|.|+| .|.+|..++..|++.|++|++.+|+ +++.+.+..... . ++.. ..+.+++.+.++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh-C---CeEEEeCCCCCHHHHHHHHhCCCE
Confidence 67899998 5999999999999999999999998 455444322111 0 1111 1234444444445888
Q ss_pred EEEecCC
Q 011394 77 IIMLVKA 83 (487)
Q Consensus 77 Ii~~vp~ 83 (487)
||.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8777653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.034 Score=52.55 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
||..-..+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.
T Consensus 2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 61 (259)
T 4e6p_A 2 MMKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----------------PA---AYAVQM 61 (259)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------TT---EEEEEC
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------CC---ceEEEe
Confidence 44333334566666 7899999999999999999999999988776654321 00 112222
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+...++.+++++.....+=+++|++...
T Consensus 62 D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 62 DVTRQDSIDAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp CTTCHHHHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2344455666777666665556788877654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=56.55 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=58.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChH---HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTS---KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~---~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~ 80 (487)
|-|||||| .|..|.-|.+.|.++.. ++....-... ++.++...... .+... .+.+++.++ +|++|+|
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~----~l~~~~~~~~~~~~~---~Dvvf~a 85 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLE----NSILSEFDPEKVSKN---CDVLFTA 85 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCC----CCBCBCCCHHHHHHH---CSEEEEC
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhcc----CceEEeCCHHHhhcC---CCEEEEC
Confidence 56899997 89999999999998854 6655542221 22221110101 12221 245666555 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.+. .. ++.+.+ .|..|||.|+..
T Consensus 86 lp~~~-s~----~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 86 LPAGA-SY----DLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp CSTTH-HH----HHHTTC-CSCEEEESSSTT
T ss_pred CCcHH-HH----HHHHHh-CCCEEEECChhh
Confidence 99873 23 344555 899999999865
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.016 Score=55.93 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|++|.|+|. |.+|..++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 678999995 9999999999999999999999973
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.027 Score=58.88 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp 82 (487)
+++|-|||+|..|.+ +|+.|.+.|++|+++|..+. ..+.+.+.+.. +..-.+++. .. .+|+||.+ +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~-----~~~g~~~~~-~~---~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQ-----IYFHHRPEN-VL---DASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE-----EESSCCGGG-GT---TCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCE-----EECCCCHHH-cC---CCCEEEECCCCC
Confidence 468999999999985 99999999999999997654 34455544321 221123332 23 38999886 55
Q ss_pred CCh-hHHHHHH---------HHhhcccCC--CEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 83 AGA-PVDETIK---------TLSAYMEKG--DCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 83 ~~~-~v~~vl~---------~l~~~l~~g--~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+. .+....+ +++..+.+. .+-|-.|++...++.-+...+...|.
T Consensus 93 ~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 93 ADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 432 2222111 222222233 35666667765566556777777774
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.01 Score=59.19 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCC-CcEEEEe-CChHHHHHHHHhhhhc-------CCCCccccC-CHHHHHhhcCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RTTSKVDETVERAKKE-------GDLPLFGFR-DPESFVNSIQKP 74 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~d-r~~~~~~~l~~~~~~~-------g~~~~~~~~-s~~e~~~~l~~a 74 (487)
+|+||||+| .|.+|..+.+.|.++. ++|.... .+....+.+.+..... +...+...+ +++++ + ++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~---~v 78 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K---DV 78 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T---TC
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c---CC
Confidence 357999999 8999999999998764 4776664 2222111121110000 000112211 33443 3 49
Q ss_pred cEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
|+||+|+|... ..+.... ++..|..|||.|+.
T Consensus 79 DvVf~atp~~~-s~~~a~~---~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 79 DVVLSALPNEL-AESIELE---LVKNGKIVVSNASP 110 (350)
T ss_dssp SEEEECCCHHH-HHHHHHH---HHHTTCEEEECSST
T ss_pred CEEEECCChHH-HHHHHHH---HHHCCCEEEECCcc
Confidence 99999998753 3333333 34568889999875
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0067 Score=60.71 Aligned_cols=35 Identities=9% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC----CcEE-EEeCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG----FPIS-VYNRTT 40 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G----~~V~-v~dr~~ 40 (487)
+++||||||+|.||+.++..|.+.. .+|. ++|++.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 3568999999999999999999863 3443 567543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.042 Score=52.18 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=59.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| |.+-+|.++|+.|++.|.+|.+.||+++++++..++....+ .+++.+. +.+.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTDE 70 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCCH
Confidence 68888 68889999999999999999999999998877665432210 1222221 3455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++++.....+=+++|+....
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 67777888777766666788886543
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.019 Score=58.43 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=67.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCCh---------------HHHHHHHHhhhhcCCC-CccccCCHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT---------------SKVDETVERAKKEGDL-PLFGFRDPESFVNS 70 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~---------------~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~ 70 (487)
++|+|.|.|++|...|+.|.+.|..|+ +.|.++ +.+.++.+......++ +.+.. +.+++...
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence 579999999999999999999999988 668873 5555555432110000 00111 22333321
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+||+++-|.+...-..+ -.+.+ ..++|+..+|.. .+.+..+.+.++|+.|+.
T Consensus 292 --~~DIliP~A~~n~i~~~----~A~~l-~ak~VvEgAN~P--~t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 292 --EYDIIVPAALENVITGE----RAKTI-NAKLVCEAANGP--TTPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCHH----HHTTC-CCSEEECCSSSC--SCHHHHHHHHHHTCEEEC
T ss_pred --CccEEEEcCCcCcCCcc----cHHHc-CCeEEEeCCccc--cCHHHHHHHHHCCCEEEC
Confidence 38999998765432222 22334 678888888875 345566778888988774
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.052 Score=53.33 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=46.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG-DL--PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~l~~ 73 (487)
.|||.|+|. |.+|++++..|++.|+ +|.++|+++ ++.+.......... .+ .+....+..+..+.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~--- 80 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD--- 80 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC---
Confidence 368999996 9999999999999996 899999975 23222111110000 00 12223455555554
Q ss_pred CcEEEEecC
Q 011394 74 PRVIIMLVK 82 (487)
Q Consensus 74 advIi~~vp 82 (487)
+|+||.+..
T Consensus 81 ~D~Vih~Ag 89 (327)
T 1y7t_A 81 ADYALLVGA 89 (327)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998753
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.026 Score=57.79 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---cEEEEe----CC----hH-HHHHHH---HhhhhcCCCCc-cccCCHHHHHhhc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF---PISVYN----RT----TS-KVDETV---ERAKKEGDLPL-FGFRDPESFVNSI 71 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~---~V~v~d----r~----~~-~~~~l~---~~~~~~g~~~~-~~~~s~~e~~~~l 71 (487)
.+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ ..+.+. +..... .+. ....++.+.++.
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc-
Confidence 589999999999999999999998 899999 87 32 211121 111100 001 013467777766
Q ss_pred CCCcEEEEecCC--ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 72 QKPRVIIMLVKA--GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 72 ~~advIi~~vp~--~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|+||-++|. +...+ .....+.++.+|+|+++..++... +...+.|...+
T Consensus 264 --aDVlInaT~~~~G~~~~----e~v~~m~~~~iVfDLynP~~t~~~---~~A~~~G~~iv 315 (439)
T 2dvm_A 264 --ADVLISFTRPGPGVIKP----QWIEKMNEDAIVFPLANPVPEILP---EEAKKAGARIV 315 (439)
T ss_dssp --CSEEEECSCCCSSSSCH----HHHTTSCTTCEEEECCSSSCSSCH---HHHHHHTCSEE
T ss_pred --CCEEEEcCCCccCCCCh----HHHHhcCCCCEEEECCCCCCcchH---HHHHHcCCeEE
Confidence 9999999987 42212 233456788899999765543332 33334465554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.062 Score=52.35 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=36.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
+.++|-|.|. |.+|+.++..|++.|++|++.+|++++.+.+.+
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHH
Confidence 3468999985 999999999999999999999999887665543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.043 Score=55.70 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~ad 75 (487)
++|.|.|.|++|...|+.|.+.|..|+ +.|+ +.+.+.++.+.... +.. .-+.+++... +||
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~-----v~~~~~~~~e~~~~--~~D 291 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGS-----LPRLDLAPEEVFGL--EAE 291 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSS-----CSCCCBCTTTGGGS--SCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCC-----cceeeccchhhhcc--Cce
Confidence 579999999999999999999999988 7788 77777777664321 110 1123344331 499
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+++-|..... +. ..-.+.+ +=++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 292 VliP~A~~n~-i~---~~~A~~l-~ak~V~EgAN~p--~t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 292 VLVLAAREGA-LD---GDRARQV-QAQAVVEVANFG--LNPEAEAYLLGKGALVVP 340 (419)
T ss_dssp EEEECSCTTC-BC---HHHHTTC-CCSEEEECSTTC--BCHHHHHHHHHHTCEEEC
T ss_pred EEEecccccc-cc---cchHhhC-CceEEEECCCCc--CCHHHHHHHHHCCCEEEC
Confidence 9999876542 22 1223334 447899988875 335666788899998874
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.027 Score=55.49 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
+|+|.|+|. |.+|+.++..|++.|++|++.+|++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 368999996 9999999999999999999999976
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.016 Score=55.52 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|.|.| .|.+|+.++..|.+. |++|.+.+|++++...+...+.. +.. ..+.+++.+.++++|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVS-----VRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBE-----EEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCE-----EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5899998 699999999999998 99999999998875543221110 111 22444455555568888887654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.04 Score=52.83 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=56.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+++| |.+-+|..+|+.|++.|.+|.+.+|+++++++..++... . +-.+-.=+.+..+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------------~---~~~~~~Dv~~~~~ 89 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------------G---AVGIQADSANLAE 89 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---CEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eEEEEecCCCHHH
Confidence 68888 567899999999999999999999999988776654211 0 2122222445566
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776655444677765543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.031 Score=53.26 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=55.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 355555 688999999999999999999999998887766543210 0 223322 234445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|++...
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6666666666655555778876544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.01 Score=63.14 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
++|.|+|+|.+|..+|+.|.+.|++|.+.|.++++++++. .. +..-.+-+++.+ .++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~-------i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VV-------VYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CE-------EESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CE-------EEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 6899999999999999999999999999999999876543 10 111122222222 356799999999875
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
...-.+..++..+.+. .+|.-..+.. . .+.+...|+..+-.|
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~~--~----~~~l~~~G~d~vi~p 462 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGEE--N----VDQLYAAGADFVVSN 462 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESSTT--S----HHHHHHHTCSEEEEH
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCHH--H----HHHHHHcCCCEEEcc
Confidence 3232233444555566 4555554432 2 223344576655444
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.01 Score=54.68 Aligned_cols=34 Identities=15% Similarity=0.439 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3699999999999999999999999999998753
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.047 Score=54.30 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=55.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CCcEEEEeC---ChHHHHHHHHhhhhcCCC----------------Ccccc--CC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPISVYNR---TTSKVDETVERAKKEGDL----------------PLFGF--RD 63 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~dr---~~~~~~~l~~~~~~~g~~----------------~~~~~--~s 63 (487)
.|+||||+|.|++|+.+.+.|.++ .++|...+- +.+....+.+.....|.+ .+... .+
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d 95 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD 95 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence 356999999999999999999987 567776542 333333332211100000 01111 24
Q ss_pred HHHHH---hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCC--EEEecCC
Q 011394 64 PESFV---NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD--CIIDGGN 109 (487)
Q Consensus 64 ~~e~~---~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 109 (487)
++++. .. +|+||.|+|.....+ ....++..|. +|||.+.
T Consensus 96 p~~i~w~~~~---vDvV~eatg~~~s~e----~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 96 PAEIPWGASG---AQIVCESTGVFTTEE----KASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGGCCHHHHT---CCEEEECSSSCCSHH----HHGGGGTTTCSEEEESSCC
T ss_pred hHHCCcccCC---CCEEEECCCchhhHH----HHHHHHHcCCcEEEEeCCC
Confidence 44431 23 889999888764322 2234566676 8888765
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.032 Score=55.43 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=49.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHH--HHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advIi~~ 80 (487)
.|+|.|.| .|.+|..+++.|++.|++|.+.+|++++. +.+...... .+.. .++.+++.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 46899998 69999999999999999999999987764 333321000 0111 22444444444559999977
Q ss_pred cCC
Q 011394 81 VKA 83 (487)
Q Consensus 81 vp~ 83 (487)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.056 Score=56.85 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--c
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--V 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--v 81 (487)
.++|-|||.|-.|.+ +|+.|.+.|++|+++|.+. ...+.|.+.+.. +..-.+++.+... +|+||.+ +
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~-----~~~G~~~~~~~~~---~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVT-----IEEGYLIAHLQPA---PDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCE-----EEESCCGGGGCSC---CSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCE-----EECCCCHHHcCCC---CCEEEECCCc
Confidence 368999999999986 7999999999999999863 344556554421 2222334443333 8999885 4
Q ss_pred CCCh-hHHHHHH---------HHh-hcc-cCC-CEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 82 KAGA-PVDETIK---------TLS-AYM-EKG-DCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 82 p~~~-~v~~vl~---------~l~-~~l-~~g-~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
|.+. .+....+ +++ ..+ +.. -+-|-.|++...++.-+...++..|.
T Consensus 91 ~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 91 KRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 5432 2322221 222 222 222 35566667765555556677777664
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.11 Score=50.64 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=76.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.+.|.+.++.+..++|++.+.++. ++|..++.++.+.| ...|++++.....+.+.+.. +
T Consensus 184 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 250 (310)
T 3doj_A 184 VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------P 250 (310)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 37889999999999999999999999998863 39999999999876 34677766544443332211 1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
-|. +......++-++..|-+.|+|+|...++...|..
T Consensus 251 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 251 AFP--LKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 121 1123345688899999999999999988876653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.046 Score=52.68 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=37.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
+++-|+| .|-+|..++..|++.|++|+++||++++.+++.+.
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~ 162 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence 4688999 99999999999999999999999999888776653
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0096 Score=59.73 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|||.|||.|..|..+|..|+++|++|+++++++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 7999999999999999999999999999998654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.076 Score=50.18 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=55.9
Q ss_pred cEEEE-ccc---HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLA-GLA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiI-GlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+.+| |.+ -+|.++|+.|++.|++|.+.+|+++..+++.+..... .. .++..+-.=|.+.
T Consensus 7 K~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~~~Dv~~~ 70 (256)
T 4fs3_A 7 KTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL---------------NQ-PEAHLYQIDVQSD 70 (256)
T ss_dssp CEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG---------------TC-SSCEEEECCTTCH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---------------CC-CcEEEEEccCCCH
Confidence 45555 764 4999999999999999999999988877766543211 00 0022222224555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++++.....+=+++|+...
T Consensus 71 ~~v~~~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 71 EEVINGFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccc
Confidence 6777777777766656677777644
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.066 Score=49.79 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----------------NA---VIGIVADLAHHED 63 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------CC---ceEEECCCCCHHH
Confidence 3466666 6899999999999999999999999988776554321 01 1222222344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|+....
T Consensus 64 v~~~~~~~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 64 VDVAFAAAVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEECCCC
Confidence 666666666555455777776554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.06 Score=50.78 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=53.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...+
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 69 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----------------PR---VHALRSDIADLNEI 69 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHHH
Confidence 455555 7899999999999999999999999988776654321 01 11222223444556
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++.+.....+=+++|+....
T Consensus 70 ~~~~~~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 70 AVLGAAAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 66666665555444677776543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.019 Score=57.55 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh-------HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT-------SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
..||-|+|.|..|.++|+.+...|. +|+++|++- +.+..+.+.....-. ......+++|+++. +|++|
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-~~~~~~~L~eav~~---ADV~I 263 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-REFKSGTLEDALEG---ADIFI 263 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-CTTCCCSCSHHHHT---TCSEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-cccchhhHHHHhcc---CCEEE
Confidence 3589999999999999999999999 999999872 222222211110000 01124578999987 99887
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (487)
=+..++... +++...+.++.+|+++||..|+.+
T Consensus 264 G~Sapgl~T----~EmVk~Ma~~pIIfalsNPt~E~~ 296 (398)
T 2a9f_A 264 GVSAPGVLK----AEWISKMAARPVIFAMANPIPEIY 296 (398)
T ss_dssp ECCSTTCCC----HHHHHTSCSSCEEEECCSSSCSSC
T ss_pred ecCCCCCCC----HHHHHhhCCCCEEEECCCCCccCC
Confidence 665433323 344555779999999999876544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=57.39 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=44.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+|+|.|.| .|.+|+.++..|++.|++|++.+|++...+ +. .... +..--+.+++.+.++++|+||-+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~-~~~~-----~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN-DYEY-----RVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------CCEE-----EECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC-ceEE-----EEccccHHHHHHhhcCCCEEEEccc
Confidence 47899998 799999999999999999999999955443 22 1100 0111113333333445888887764
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.035 Score=58.39 Aligned_cols=125 Identities=8% Similarity=0.083 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+.++.-.. ...+-.-+....+.++.+ .+++-+.+.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~l-Np~v~v~~~~~-- 109 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 109 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHh-CCCCeEEEeCC--
Confidence 589999999999999999999998 8999998765444554432100 000001111222333332 24555555544
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.+...++.....+..-++||+++- .+..-..+.+.+...++.++.+.+.|
T Consensus 110 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 110 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CcchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 244433323344556689999854 33444445666777888888876554
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.079 Score=50.70 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=54.4
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 89 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG-----------------CG---AAACRVDVSDEQQ 89 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----------------SS---CEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----------------Cc---ceEEEecCCCHHH
Confidence 45555 47899999999999999999999999988776654321 00 2222222344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 90 v~~~~~~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 90 IIAMVDACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776544
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.05 Score=54.48 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCcEEEEc-ccHHHHHHHH-HHHHCCC---cEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAG-LAVMGQNLAL-NIAEKGF---PISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~-~L~~~G~---~V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+||||+| .|.+|+.+.+ .|.++++ .+..+.. +..+ .+...... ...+....+++++ +. +|+||.|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~--~i~~~~~~~~~~~-~~---~DvVf~a 72 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGT--TGTLQDAFDLEAL-KA---LDIIVTC 72 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTC--CCBCEETTCHHHH-HT---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCC--ceEEEecCChHHh-cC---CCEEEEC
Confidence 56999999 9999999999 5655654 3444433 2211 11000000 0011222245554 44 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCC--EEEecCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGD--CIIDGGNE 110 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~--iiId~st~ 110 (487)
+|.. ...+....+. ..|. +|||.|+.
T Consensus 73 ~g~~-~s~~~a~~~~---~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 73 QGGD-YTNEIYPKLR---ESGWQGYWIDAASS 100 (367)
T ss_dssp SCHH-HHHHHHHHHH---HTTCCCEEEECSST
T ss_pred CCch-hHHHHHHHHH---HCCCCEEEEcCChh
Confidence 9865 3344444333 4564 99999876
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.06 Score=53.91 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC--c---EEEEeCChH----HHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF--P---ISVYNRTTS----KVDETVERAKKEG-DL--PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~--~---V~v~dr~~~----~~~~l~~~~~~~g-~~--~~~~~~s~~e~~~~l~~ 73 (487)
.+||+||| +|.+|.+++..|+..+. + |.++|.+.+ +++-......... .+ ++...++..+..++
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d--- 108 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED--- 108 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC---
Confidence 35899999 79999999999998875 2 777654433 2332222111100 00 23344445555454
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ .. ++.+...+..+..++.+|+..||.
T Consensus 109 aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 109 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 99999975322 11 222223454544577788888863
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.016 Score=56.77 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
.+|+|-|.| .|.+|..++..|++.|++|++.+|++++.+.+..... .+.. ..+.+++.+.++.+|+||.+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 356899998 6999999999999999999999998776543321110 0010 1233444443445888877754
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.085 Score=50.16 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=53.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+|-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+... . ...+..=+.+...+
T Consensus 11 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~---~~~~~~Dv~d~~~v 69 (270)
T 1yde_A 11 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------------------G---AVFILCDVTQEDDV 69 (270)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------------------T---EEEEECCTTSHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------------C---CeEEEcCCCCHHHH
Confidence 455555 7899999999999999999999999887766543210 0 11222223344456
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~iD~lv~nAg~ 92 (270)
T 1yde_A 70 KTLVSETIRRFGRLDCVVNNAGH 92 (270)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665555455778776643
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=52.13 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=47.8
Q ss_pred cEEEEcc-cHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 9 RIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
+|-|.|. |.+|..++..|++. |++|++.+|++++.+.+...+.. +.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-----VRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-----EEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788985 99999999999998 99999999998876655432210 111 1244444444556898888764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=48.64 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=56.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-.=+.+...
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~ 69 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPES 69 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHH
Confidence 45555 5 78999999999999999999999999887766543211 0 1122222445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 70 v~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 70 IEAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776665556788887654
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.057 Score=53.19 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEE-EeC--ChHHHHHHHHh
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNR--TTSKVDETVER 49 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~dr--~~~~~~~l~~~ 49 (487)
|++-..+.||||.|.|++|+.+++.+...|.+|.. .|+ +.+.+..+.+.
T Consensus 1 ~~~~~~~~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~y 52 (346)
T 3h9e_O 1 MVSVARELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKY 52 (346)
T ss_dssp -----CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHC
T ss_pred CcccCCeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccc
Confidence 67777889999999999999999999888888776 564 56666666653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.079 Score=50.67 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=56.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA----------------G---HDVDGSSCDVTSTD 86 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 344555 789999999999999999999999998877765533210 0 223322 244455
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6677777666655555788877654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.11 Score=49.01 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 67 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHLDVTQPAQ 67 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEecCCCHHH
Confidence 3466666 7899999999999999999999999887766543211 01 1122222344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|+....
T Consensus 68 v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 68 WKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555455778776653
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.064 Score=52.20 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=70.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCc-cchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCI-IRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gci-i~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
++++.+| .+.++.+..++|++.+.++ .++|..++.++++.+.. .+|++++.....+.++.....
T Consensus 174 g~g~~~k----~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----- 238 (306)
T 3l6d_A 174 AFATVLH----AHAFAAMVTFFEAVGAGDR------FGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD----- 238 (306)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT-----
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC-----
Confidence 4556666 6778899999999999875 34999999999987632 578888776555444321110
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
.|. +.-....++.++..|.+.|+|+|.+.++...|..
T Consensus 239 ~~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (306)
T 3l6d_A 239 QAR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQR 275 (306)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 011 1112345688999999999999999998876654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.034 Score=51.62 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEK--GFPISVYNRTTSKVDET 46 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l 46 (487)
++++|-|.| .|.+|..+++.|++. |++|++.+|++++.+.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~ 46 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI 46 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc
Confidence 457899998 799999999999999 89999999998876544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.09 Score=55.73 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~ 83 (487)
.++|-|+|.|.+|..++..|.+.|++|++.|.++++++.+.+. +... +....+.++..+ .++++|.+++ .++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~a~~vi~-t~~ 201 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKV----VYGSPTDAHVLAGLRVAAARSIIA-NLS 201 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEE----EESCTTCHHHHHHTTGGGCSEEEE-CSC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeE----EEeCCCCHHHHHhcCcccCCEEEE-eCC
Confidence 3579999999999999999999999999999999999888765 3210 122222223322 2456999987 444
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
+ .....+-..+..+..-.++.-..
T Consensus 202 D-~~n~~~~~~ar~~~~~~iiar~~ 225 (565)
T 4gx0_A 202 D-PDNANLCLTVRSLCQTPIIAVVK 225 (565)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECS
T ss_pred c-HHHHHHHHHHHHhcCceEEEEEC
Confidence 3 22222222333344445555443
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.11 Score=48.75 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=56.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... ... ..+.++..-+ .+..
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~--~~~~~~~~D~~~~~~~ 77 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--------------ETG--RQPQWFILDLLTCTSE 77 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------hcC--CCceEEEEecccCCHH
Confidence 344555 68999999999999999999999999887776543211 011 0133333333 4445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 78 ~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 78 NCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 6677777776665556788887654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.059 Score=55.30 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH--HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v--p~ 83 (487)
++|.|||+|..|.+.|+.|.+.|++|+++|...... ..+. .+. ++..-....+.++. +|.||++- |.
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~~ 76 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIAL 76 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSCT
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCCC
Confidence 589999999999999999999999999999764321 1222 221 12211212444444 89888873 32
Q ss_pred C-hhHHHHH----------HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 84 G-APVDETI----------KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 84 ~-~~v~~vl----------~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
. ..+.... +-+...++...|-|-.|++...++.-+...+...|...
T Consensus 77 ~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 133 (439)
T 2x5o_A 77 AHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 133 (439)
T ss_dssp TCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 2 1222211 11112233334556666676555655667777777544
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.019 Score=57.38 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEE-eCCh--HHHHHHHH---------hhhhcCCCCcccc-CCHHHHHhhc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVY-NRTT--SKVDETVE---------RAKKEGDLPLFGF-RDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~l~~---------~~~~~g~~~~~~~-~s~~e~~~~l 71 (487)
++|||||| .|+.|.-|.+.|.++-+ ++... .++. .++..... ... ..... .+.+++ +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-----~~~v~~~~~~~~-~-- 78 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-----DMEIKPTDPKLM-D-- 78 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-----TCBCEECCGGGC-T--
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccc-----cceEEeCCHHHh-c--
Confidence 45899999 79999999998887643 55544 3332 12222100 000 01111 133332 3
Q ss_pred CCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|+||+|+|.+. ..+....+ +..|..|||.|+-.
T Consensus 79 -~vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 79 -DVDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp -TCCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred -CCCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 4999999999874 34444433 45789999999864
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.019 Score=57.38 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEE-eCCh--HHHHHHHH---------hhhhcCCCCcccc-CCHHHHHhhc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVY-NRTT--SKVDETVE---------RAKKEGDLPLFGF-RDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~l~~---------~~~~~g~~~~~~~-~s~~e~~~~l 71 (487)
++|||||| .|+.|.-|.+.|.++-+ ++... .++. .++..... ... ..... .+.+++ +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-----~~~v~~~~~~~~-~-- 78 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-----DMEIKPTDPKLM-D-- 78 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-----TCBCEECCGGGC-T--
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccc-----cceEEeCCHHHh-c--
Confidence 45899999 79999999998887643 55544 3332 12222100 000 01111 133332 3
Q ss_pred CCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|+||+|+|.+. ..+....+ +..|..|||.|+-.
T Consensus 79 -~vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 79 -DVDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp -TCCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred -CCCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 4999999999874 34444433 45789999999864
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.06 Score=49.69 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34566776 7899999999999999999999999998877664
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.11 Score=50.16 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=56.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi--~~vp~~~ 85 (487)
+|-|.| .|-+|..+|+.|++.|++|++.+|++++.+++.+..... . .++.+ .=+.+..
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ----------------G---FDAHGVVCDVRHLD 93 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEEccCCCHH
Confidence 466666 688999999999999999999999999887766533210 1 22322 2344445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|++...
T Consensus 94 ~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 94 EMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 6666776666555455788877654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.08 Score=52.73 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=68.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.+..+ .+++-+...+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeecc
Confidence 3589999999999999999999997 899999875322222211100 0000000011122222211 145555554432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.-.. .+.. +..-++|||++-........+.+.+.+.++.++.+.+.|
T Consensus 197 i~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 197 INDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CCSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cCchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 10000 1223 567789999875443233445566778888888775543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.025 Score=56.94 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEE-EEe-C-ChH-HHHHHHHh--------hhhcCCCCcccc-CCHHHHHhhc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PIS-VYN-R-TTS-KVDETVER--------AKKEGDLPLFGF-RDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~-v~d-r-~~~-~~~~l~~~--------~~~~g~~~~~~~-~s~~e~~~~l 71 (487)
++|||||| .|..|.-|.+.|.++-+ ++. ++. + +.. ++.+.... +.. ..... .+.++..++
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~----~~~v~~~~~~~~~~~- 93 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQ----DIVVQECKPEGNFLE- 93 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHH----TCBCEESSSCTTGGG-
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccc----cceEEeCchhhhccc-
Confidence 35799999 79999999998888753 664 442 2 222 12221100 000 01111 112212334
Q ss_pred CCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|+||+|+|.+ ...+....+ +..|..|||.|+..
T Consensus 94 --~Dvvf~alp~~-~s~~~~~~~---~~~G~~VIDlSa~f 127 (381)
T 3hsk_A 94 --CDVVFSGLDAD-VAGDIEKSF---VEAGLAVVSNAKNY 127 (381)
T ss_dssp --CSEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred --CCEEEECCChh-HHHHHHHHH---HhCCCEEEEcCCcc
Confidence 99999999976 344444444 45789999999864
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.087 Score=48.74 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE-EecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII-MLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi-~~vp~ 83 (487)
.||.+|+|+ |.||+.++....+.|+++. .+|+..+ . ++ +. +|++| .+.|+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------~----------~l----~~---~DVvIDFT~P~ 64 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------E----------EL----DS---PDVVIDFSSPE 64 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------E----------EC----SC---CSEEEECSCGG
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------c----------cc----cC---CCEEEECCCHH
Confidence 479999997 9999999887777788765 4576431 0 01 12 89988 55554
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
.+...++... ..|.-+|..+|+....-.+..+.+.++ +..+-+|.+
T Consensus 65 --a~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNf 110 (228)
T 1vm6_A 65 --ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNF 110 (228)
T ss_dssp --GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCC
T ss_pred --HHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEeccc
Confidence 4555554433 457778888888755443344444333 555555543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.077 Score=49.90 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=54.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----------------G---GHAVAVKVDVSDRD 64 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 355555 789999999999999999999999988776655432110 0 222222 234444
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+=+++|+....
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555455778876643
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.11 Score=48.88 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=55.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
+++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 68 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 68 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCH
Confidence 3565665 789999999999999999999999988776655432110 0 222222 23444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 69 EAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 55666666666555455788877654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.071 Score=50.36 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=57.5
Q ss_pred cEEEEcc-cH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLAGL-AV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiIGl-G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
++-|.|. |. +|..+|+.|++.|++|++.+|+.++.+++.+..... ...++.++ =+.+.
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL------------------GLGRVEAVVCDVTST 85 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------CSSCEEEEECCTTCH
T ss_pred EEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------------------CCCceEEEEeCCCCH
Confidence 5777787 84 999999999999999999999998877765543210 00223332 24445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 56777777766655555788877654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.12 Score=48.64 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=56.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+-.=+.+...+
T Consensus 8 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dv~~~~~v 70 (257)
T 3imf_A 8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--------------PGQ---ILTVQMDVRNTDDI 70 (257)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--------------TTC---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHHH
Confidence 344445 689999999999999999999999999887766543210 000 12222224445567
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++.+.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 71 QKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776655556788877653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0086 Score=59.97 Aligned_cols=90 Identities=9% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCc---EEEEe-C-ChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVYN-R-TTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~---V~v~d-r-~~~~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~ 79 (487)
++||+||| .|..|.-|.+.|.+++|. +.... + +..+.-.+ .+. ..... .+.++ ++++|+||+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~--~~~-----~~~~~~~~~~~----~~~~Dvvf~ 70 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF--KDQ-----DITIEETTETA----FEGVDIALF 70 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE--TTE-----EEEEEECCTTT----TTTCSEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee--cCC-----CceEeeCCHHH----hcCCCEEEE
Confidence 46999999 999999999999998773 33333 2 21110000 000 01111 12222 234999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|+|.. ...+....+ +..|..|||.|+..
T Consensus 71 a~~~~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 71 SAGSS-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCChH-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 99865 333333333 45788999999864
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.13 Score=48.29 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=54.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+..... ...+.... .+..++..=+.+...
T Consensus 8 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP---------GSKEGPPR-GNHAAFQADVSEARA 77 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---------CccccccC-cceEEEEecCCCHHH
Confidence 4566665 799999999999999999999999998877665432110 00000000 002222222344445
Q ss_pred HHHHHHHHhhcccCC-CEEEecCCC
Q 011394 87 VDETIKTLSAYMEKG-DCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g-~iiId~st~ 110 (487)
++.+++.+.....+= ++||++...
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCc
Confidence 666666665544443 778887654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.13 Score=47.34 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=33.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
+|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 7 ~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466665 8999999999999999999999999887766543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.097 Score=49.80 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=57.8
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.|-+|..+|+.|++.|++|++.+|++++.+++.+.... .-.. ...+..=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dv~d~~~ 91 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ--------------AGLE---GRGAVLNVNDATA 91 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--------------HTCC---CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEEeCCCHHH
Confidence 55566 578999999999999999999999999887766543221 0011 2333333455556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 92 VDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777766655556788877654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.062 Score=50.49 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|++.-..++|-|.| .|-+|..+++.|++.|++|++.+| ++++.+++.+.... .. .++.+
T Consensus 1 m~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~----------------~~---~~~~~ 61 (261)
T 1gee_A 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK----------------VG---GEAIA 61 (261)
T ss_dssp CCGGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----------------TT---CEEEE
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh----------------cC---CceEE
Confidence 54433334566665 899999999999999999999999 77766655433210 00 22222
Q ss_pred Ee--cCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 79 ML--VKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 79 ~~--vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. +.+...++.+++.+.....+=++||++...
T Consensus 62 ~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 95 (261)
T 1gee_A 62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 22 333345555565555544444777776543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.12 Score=49.26 Aligned_cols=82 Identities=13% Similarity=0.236 Sum_probs=56.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .. ...+-.=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 88 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPDS 88 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHHH
Confidence 56666 47899999999999999999999999988776654321 11 2223223444556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 89 v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 89 VRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 677776666655555778877654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.046 Score=55.45 Aligned_cols=175 Identities=10% Similarity=0.117 Sum_probs=102.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcE-EEEeCC----------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRT----------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~----------~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
++|.|-|.|++|...|+.|.+.|..| .+.|.+ .+.+.++.++.....++..+ .-+.+++... +||+
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~-~~~~~~i~~~--~~DI 298 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTD-VITNEELLEK--DCDI 298 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSC-CBCHHHHHHS--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcE-EecCccceec--cccE
Confidence 57999999999999999999999987 466766 55555444321100000011 1245665542 4999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCChhhhcCCCccccCCCHH
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPGGSFE 154 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--vsgg~~~a~~G~~i~~gg~~~ 154 (487)
++-|.....-.. +-.+.+ .-++|+...|.. .+.+..+.+.++|+.|+.-- -.||.. -.
T Consensus 299 liPcA~~n~I~~----~~a~~l-~ak~V~EgAN~p--~t~eA~~iL~~rGI~~~PD~~aNAGGV~-------------vS 358 (424)
T 3k92_A 299 LVPAAISNQITA----KNAHNI-QASIVVERANGP--TTIDATKILNERGVLLVPDILASAGGVT-------------VS 358 (424)
T ss_dssp EEECSCSSCBCT----TTGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEECHHHHTTHHHH-------------HH
T ss_pred EeecCcccccCh----hhHhhc-CceEEEcCCCCC--CCHHHHHHHHHCCCEEECchHhcCCCEE-------------ee
Confidence 998876542111 122334 567888888875 34566778899999887432 233321 12
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
.+|.++. +.. ..+- ..-+...+...+...+.+.+..+++.+ +++.+...++
T Consensus 359 ~~E~~qn----~~~--------~~w~--------~eeV~~~l~~~m~~~~~~v~~~a~~~~-~~~~~aA~~~ 409 (424)
T 3k92_A 359 YFEWVQN----NQG--------YYWS--------EEEVAEKLRSVMVSSFETIYQTAATHK-VDMRLAAYMT 409 (424)
T ss_dssp HHHHHHH----HHT--------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred hhHHHhc----ccc--------cCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 2332222 111 0110 123444555556667777888888888 8877665554
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.044 Score=51.24 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=56.8
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|+..-..++|-|.| .|-+|..+++.|++.|++|.+.+|+ +++.+++.+.... .. .++.+
T Consensus 1 m~~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~---~~~~~ 61 (258)
T 3afn_B 1 MFPDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA----------------DG---GDAAF 61 (258)
T ss_dssp -CGGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH----------------TT---CEEEE
T ss_pred CCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh----------------cC---CceEE
Confidence 44333334566665 7999999999999999999999998 7766655443210 00 22222
Q ss_pred E--ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 79 M--LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 79 ~--~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+ =+.+...++.+++.+.....+=++||++...
T Consensus 62 ~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 62 FAADLATSEACQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 2334445666666665555455788877653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.21 Score=49.22 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-.|..+|.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.+..+ .+++-+...+..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i-nP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 3589999999999999999999997 888999875322222211100 0000000111222222221 145555554321
Q ss_pred ---------hh--HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 ---------AP--VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ---------~~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.. ...-.+.+...+.+-++|||++-... .-..+...+...++.++.+.
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~aa 171 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINAA 171 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG-GGHHHHHHHHHTTCEEEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH-HHHHHHHHHHHcCCcEEEee
Confidence 00 01111223344556789999986653 33344566677888888753
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.059 Score=52.03 Aligned_cols=73 Identities=14% Similarity=0.362 Sum_probs=57.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.||| ...+|.+||..|.+.+.+|+++... +.++++..++ +|+||.++.-+..
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------------------T~dl~~~~~~---ADIvV~A~G~p~~ 235 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------------------TQNLPELVKQ---ADIIVGAVGKAEL 235 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSSHHHHHHT---CSEEEECSCSTTC
T ss_pred CEEEEEeccccccchHHHHHHhcCCEEEEecCC---------------------CCCHHHHhhc---CCeEEeccCCCCc
Confidence 3799999 6678999999999999999998643 2356666776 9999999976643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ..++++|.+|||.+..
T Consensus 236 i~------~d~vk~GavVIDVGin 253 (303)
T 4b4u_A 236 IQ------KDWIKQGAVVVDAGFH 253 (303)
T ss_dssp BC------GGGSCTTCEEEECCCB
T ss_pred cc------cccccCCCEEEEecee
Confidence 22 2468899999999864
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.14 Score=48.38 Aligned_cols=85 Identities=9% Similarity=0.132 Sum_probs=56.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .... .++.++. +.+..
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ--------------RFPG---ARLFASVCDVLDAL 72 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HSTT---CCEEEEECCTTCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--------------hcCC---ceEEEEeCCCCCHH
Confidence 344455 78999999999999999999999999887776553221 0000 1233322 34445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 73 ~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 73 QVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp HHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776655556788887654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.072 Score=51.04 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 69 (280)
T 3tox_A 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG----------------G---GEAAALAGDVGDE 69 (280)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT----------------T---CCEEECCCCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCH
Confidence 44454 5 689999999999999999999999998887766543210 0 222222 23344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 70 ALHEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 55666666666655555788877654
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.022 Score=57.31 Aligned_cols=84 Identities=10% Similarity=0.115 Sum_probs=60.7
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
...||-|||. |+.|..-+..+..-|. .|++||+++... +. + .+++. . +|+||-|+
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~-----~------~~~i~-~---aDivIn~v 271 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GG-----P------FDEIP-Q---ADIFINCI 271 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CS-----C------CTHHH-H---SSEEEECC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CC-----c------hhhHh-h---CCEEEECc
Confidence 3468999999 9999999999999998 999999886321 21 1 13443 4 99999999
Q ss_pred CCChhHHHHH-HHHhhcc-cCCCEEEecCCC
Q 011394 82 KAGAPVDETI-KTLSAYM-EKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~~v~~vl-~~l~~~l-~~g~iiId~st~ 110 (487)
.-+.....++ ++.+..+ ++|.+|||.|.-
T Consensus 272 lig~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 272 YLSKPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp CCCSSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred CcCCCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 8532211222 4555667 899999999743
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0082 Score=59.55 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCC---CcEEEEe-C-ChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEE
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKG---FPISVYN-R-TTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVII 78 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G---~~V~v~d-r-~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi 78 (487)
+|+||+|+| .|.+|+.+.+.|.+++ ++|..++ + +..+.-.+. +. .+...+ +++.+ + ++|+||
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~--~~-----~i~~~~~~~~~~-~---~vDvVf 70 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GK-----TVRVQNVEEFDW-S---QVHIAL 70 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEET--TE-----EEEEEEGGGCCG-G---GCSEEE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeec--Cc-----eeEEecCChHHh-c---CCCEEE
Confidence 367999999 9999999999999874 3566554 2 221100000 00 112211 12222 3 399999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|+|... ..+.... ++..|..+||.|+..
T Consensus 71 ~a~g~~~-s~~~a~~---~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 71 FSAGGEL-SAKWAPI---AAEAGVVVIDNTSHF 99 (336)
T ss_dssp ECSCHHH-HHHHHHH---HHHTTCEEEECSSTT
T ss_pred ECCCchH-HHHHHHH---HHHcCCEEEEcCCcc
Confidence 9998752 3333333 345788999998764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.81 E-value=0.029 Score=53.41 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=48.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
|+|-|.|. |.+|+.++..|++. |++|++.+|++++.+.+...+.. +.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-----VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-----EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47889985 99999999999998 99999999998876655432210 111 1234444444455888887654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.17 Score=46.92 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=56.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -. ....++..-+ .+..
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~--~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA--------------GQ--PQPLIIALNLENATAQ 79 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------TS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc--------------CC--CCceEEEeccccCCHH
Confidence 355555 699999999999999999999999999887766543211 00 0022333223 3344
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 80 QYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5666666666655556788877654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.052 Score=55.85 Aligned_cols=108 Identities=14% Similarity=0.310 Sum_probs=76.2
Q ss_pred CcEEEEccc----------HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
.+|+|+|+. .-...++..|.+.|.+|.+||+.... ...+... ++..+.++.++++. +|.|
T Consensus 323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~-----~~~~~~~~~~~~~~---ad~v 392 (446)
T 4a7p_A 323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVE--QASKMLT-----DVEFVENPYAAADG---ADAL 392 (446)
T ss_dssp CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHH--HHGGGCS-----SCCBCSCHHHHHTT---BSEE
T ss_pred CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCH--hHHHhcC-----CceEecChhHHhcC---CCEE
Confidence 589999997 66889999999999999999987532 2221111 35667888888887 9999
Q ss_pred EEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 78 IMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 78 i~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++++..+. .+. -++.+...+ ++.+|+|+-+.... +.+.+.|+.|...+
T Consensus 393 vi~t~~~~-f~~~d~~~~~~~~-~~~~i~D~r~~~~~------~~~~~~g~~y~~iG 441 (446)
T 4a7p_A 393 VIVTEWDA-FRALDLTRIKNSL-KSPVLVDLRNIYPP------AELERAGLQYTGVG 441 (446)
T ss_dssp EECSCCTT-TTSCCHHHHHTTB-SSCBEECSSCCSCH------HHHHHTTCBCCCSS
T ss_pred EEeeCCHH-hhcCCHHHHHHhc-CCCEEEECCCCCCH------HHHHhcCCEEEEec
Confidence 99998763 221 124455544 45789999988743 23456788876554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.084 Score=49.38 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=56.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+++.+..... . .++.++. +.+..
T Consensus 11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----------------G---GTAISVAVDVSDPE 71 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHH
Confidence 455556 689999999999999999999999998887766543210 1 2233332 34445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6667777666655566788877654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.048 Score=52.40 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC-CcEEEEeCChHHHH--HHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKG-FPISVYNRTTSKVD--ETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~--~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~ 80 (487)
+++|.|.|. |.+|..++..|++.| ++|.+.+|++++.. .+...+.. +.. ..+.+++.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE-----VVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE-----EEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE-----EEEecCCCHHHHHHHHhcCCEEEEe
Confidence 468999986 999999999999998 99999999977642 22222110 111 12344444444458888877
Q ss_pred cC
Q 011394 81 VK 82 (487)
Q Consensus 81 vp 82 (487)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.066 Score=52.95 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=59.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhc---CCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSI---QKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l---~~advIi~~vp 82 (487)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+... -+.. ..+..+.+.++ ...|+||-++.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~---~~~~~~~~~~~~v~~~~~g~g~D~vid~~g 245 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY---VINPFEEDVVKEVMDITDGNGVDVFLEFSG 245 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE---EECTTTSCHHHHHHHHTTTSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE---EECCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 479999999999999999989999 9999999999887776544311 0000 11222222221 13688888776
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.... ++...+.+.++-.++..+.
T Consensus 246 ~~~~----~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 246 APKA----LEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CHHH----HHHHHHHEEEEEEEEECCC
T ss_pred CHHH----HHHHHHHHhcCCEEEEEcc
Confidence 4322 2333344445555555543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.1 Score=49.38 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=57.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----------------G---RRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 355555 678999999999999999999999998887766543210 0 233333 244555
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+=+++|+....
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6777777777666566788887643
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.099 Score=49.77 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=54.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 7 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~~ 66 (281)
T 3m1a_A 7 VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP-----------------DR---AEAISLDVTDGERI 66 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------CC---ceEEEeeCCCHHHH
Confidence 455555 7999999999999999999999999887766554211 01 22222334444566
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=++||++...
T Consensus 67 ~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 67 DVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCc
Confidence 66666666555555788877653
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.082 Score=48.84 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=53.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... + .. .++.++. +.+.
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~--~~---~~~~~~~~D~~~~ 64 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ-------------E--QG---VEVFYHHLDVSKA 64 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------------H--HC---CCEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------------h--cC---CeEEEEEeccCCH
Confidence 3455666 68899999999999999999999999887776543210 0 01 2333332 3334
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++++.....+=+++|+....
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag~ 90 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAGL 90 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 44555555555444455677776544
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.14 Score=52.99 Aligned_cols=117 Identities=14% Similarity=0.221 Sum_probs=76.3
Q ss_pred CcEEEEcccH----------HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C---CCCccccCCHHHHHhh
Q 011394 8 TRIGLAGLAV----------MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G---DLPLFGFRDPESFVNS 70 (487)
Q Consensus 8 ~kIgiIGlG~----------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g---~~~~~~~~s~~e~~~~ 70 (487)
.+|+|+|+.. -...++..|.+.|.+|.+||+.-...+ +....... + ..++..+.++.+.++.
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQ-IVVDLSHPGVSEDDQVSRLVTISKDPYEACDG 408 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHH-HHHHHCC------CHHHHHEEECSSHHHHHTT
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHH-HhhhhccccccccccccCceeecCCHHHHHhC
Confidence 5799999975 888999999999999999998632211 11110000 0 0013456678888776
Q ss_pred cCCCcEEEEecCCChhHHHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 71 IQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+|.|++++..+ +.+.. ++.+...+....+|+|.-+.... ..+.+...|+.|...+
T Consensus 409 ---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 409 ---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp ---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred ---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 99999999876 33321 34555555555669999888743 1233455688887654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.086 Score=50.37 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... -.. ...+-.=+.+...+
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--------------GGK---ALPIRCDVTQPDQV 96 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--------------TCC---CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEEcCCCCHHHH
Confidence 455555 789999999999999999999999998877665543210 001 22222234455567
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|+....
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 97 RGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776655566788887654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.13 Score=49.33 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=56.5
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCChh
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGAP 86 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~~ 86 (487)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+...
T Consensus 31 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~~ 91 (283)
T 3v8b_A 31 ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA----------------G---GQAIALEADVSDELQ 91 (283)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT----------------T---CCEEEEECCTTCHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHHH
Confidence 44455 789999999999999999999999998887766543210 0 2333332 445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 92 v~~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 92 MRNAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 777777776655556788887654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.14 Score=48.05 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=55.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+++.+.... . ...+..=+.+...+
T Consensus 11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~~ 70 (261)
T 3n74_A 11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD-----------------A---ALAVAADISKEADV 70 (261)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTSHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEecCCCHHHH
Confidence 466666 67899999999999999999999999888776543210 0 12222223444556
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++.+.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 71 DAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCcc
Confidence 66666666555555777776554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.2 Score=46.57 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=33.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
+|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 465665 7999999999999999999999999887765543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.38 Score=47.95 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc-CCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI-QKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l-~~advIi~~vp~~~~ 86 (487)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+... +.-..+ .+.++.+ ...|+||-++..+..
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~-~~~~~~~~~g~Dvvid~~g~~~~ 270 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRN-ADEMAAHLKSFDFILNTVAAPHN 270 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTC-HHHHHTTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcE----Eecccc-HHHHHHhhcCCCEEEECCCCHHH
Confidence 4799999999999999888889999999999999988777655321 111122 2333322 347999999976544
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++. ....+.++-.++..+..
T Consensus 271 ~~~----~~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 271 LDD----FTTLLKRDGTMTLVGAP 290 (369)
T ss_dssp HHH----HHTTEEEEEEEEECCCC
T ss_pred HHH----HHHHhccCCEEEEeccC
Confidence 443 34555666666666543
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.25 Score=47.61 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=70.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCC-----ccchhhHHHHHHHHhhCCC-CC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGC-----IIRAVFLDRIKKAYDRNAD-LA 397 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gc-----ii~s~ll~~~~~~~~~~~~-~~ 397 (487)
.+.++.+|+++|.+.+..+..++|++.+.++. ++|..+++++|+..- --+|++.+ .+. +.
T Consensus 174 ~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~~ 239 (296)
T 3qha_A 174 PGAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDLE 239 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhhh
Confidence 37889999999999999999999999998853 499999977776321 22343322 111 11
Q ss_pred CCcCChhHHH--HH-hhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011394 398 NLLVDPEFAK--EI-VDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 441 (487)
Q Consensus 398 ~ll~~~~~~~--~~-~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~ 441 (487)
. .++-|.- .. .-....++-++..|.+.|+|+|.+.++...|.
T Consensus 240 ~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~ 284 (296)
T 3qha_A 240 P--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLA 284 (296)
T ss_dssp T--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred c--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 2 2233332 00 23455678888999999999999999987554
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.15 Score=48.10 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=56.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . ..++.++ =+.+.
T Consensus 11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~---~~~~~~~~~Dv~~~ 72 (262)
T 3pk0_A 11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL---------------G---SGKVIGVQTDVSDR 72 (262)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---------------S---SSCEEEEECCTTSH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh---------------C---CCcEEEEEcCCCCH
Confidence 44455 4 789999999999999999999999999877766543210 0 0122222 23444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|++...
T Consensus 73 ~~v~~~~~~~~~~~g~id~lvnnAg~ 98 (262)
T 3pk0_A 73 AQCDALAGRAVEEFGGIDVVCANAGV 98 (262)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 56667776666655556788877654
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.08 Score=52.18 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEE-eC-ChHHHHHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVY-NR-TTSKVDETVE 48 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~-dr-~~~~~~~l~~ 48 (487)
|.||||+|.|++|+.+.+.|.++. .+|... |+ +++....+.+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~ 45 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLK 45 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhc
Confidence 358999999999999999998864 365544 44 3444443333
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.18 Score=47.09 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=54.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 9 VALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA----------------AG---AKVHVLELDVADRQ 69 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------cC---CcEEEEECCCCCHH
Confidence 455555 78999999999999999999999998887765543211 01 223222 234445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 70 GVDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555455778776543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.62 E-value=0.084 Score=50.07 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCCCCCCcEEEEc---ccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011394 1 MVEGKQLTRIGLAG---LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 1 ~~~~~~~~kIgiIG---lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
|+..-+.+++-|.| .|-+|..+|+.|++.|++|.+.+|++++. +++.+... .. ..+
T Consensus 1 Mm~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~---~~~ 60 (269)
T 2h7i_A 1 MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLP-----------------AK---APL 60 (269)
T ss_dssp -CCTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSS-----------------SC---CCE
T ss_pred CccccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcC-----------------CC---ceE
Confidence 44332334576778 58999999999999999999999997652 43332100 01 233
Q ss_pred EEEecCCChhHHHHHHHHhhccc---CCCEEEecCCCC
Q 011394 77 IIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEW 111 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~---~g~iiId~st~~ 111 (487)
+..=+.+...++.+++.+..... +=+++|++....
T Consensus 61 ~~~Dv~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 61 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 98 (269)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCC
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCCceEEEECCccC
Confidence 33334455566777766665543 336777766543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.12 Score=48.05 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=57.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----------------G---FKARGLVLNISDIE 67 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEEecCCCHH
Confidence 455555 789999999999999999999999998877765533210 0 223222 244455
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.++.+++++.....+=+++|++....
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 67777777766555557888876543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.15 Score=48.46 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=55.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 72 (271)
T 3tzq_B 13 VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG-----------------RG---AVHHVVDLTNEVSV 72 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC-----------------TT---CEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------CC---eEEEECCCCCHHHH
Confidence 354555 6899999999999999999999999887766554321 01 22222234444566
Q ss_pred HHHHHHHhhcccCCCEEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+++.+.....+=+++|+.....
T Consensus 73 ~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 73 RALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 666666666555557788766543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.12 Score=48.16 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=54.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .. -.. ..++..=+.+...
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~---~~~---~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH----------AY---ADK---VLRVRADVADEGD 66 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHST----------TT---GGG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----------hc---CCc---EEEEEecCCCHHH
Confidence 3466665 79999999999999999999999998877665543200 00 011 1222222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=++||++...
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag~ 90 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAGI 90 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555455777776643
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.029 Score=57.94 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=71.9
Q ss_pred CcEEEEccc----HHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLA----VMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+|+|||++ .+|..+.++|.+.| +.|+..|+..+.+ . ++..+.|++|+... +|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE---------C---CEeccCCHHHcCCC---CCEEEEecC
Confidence 479999998 89999999999985 6676666652211 1 35678888887665 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCch--h-----HHHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE--N-----TERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~-----~~~~~~~l~~~g~~~i~ 131 (487)
.. .+.++++++...- - +.++..+.+.+. + .+++.+.+++.|+++++
T Consensus 74 ~~-~~~~~v~e~~~~G-i-~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 74 KR-FVKDTLIQCGEKG-V-KGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp HH-HHHHHHHHHHHHT-C-CEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHcC-C-CEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 75 5677776665531 2 334444444432 2 34555666777888774
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.024 Score=59.48 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=45.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+|+|.|.| .|.+|+.++..|++.|++|++.+|++.+.+. . .....+...+.+ +++|+||-+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~----v------~~d~~~~~~~~l---~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK----R------FWDPLNPASDLL---DGADVLVHLAG 210 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC----E------ECCTTSCCTTTT---TTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc----e------eecccchhHHhc---CCCCEEEECCC
Confidence 78999998 7999999999999999999999999765311 0 011122223333 34899998764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.15 Score=48.74 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=56.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCC-cEEEEecCCCh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKP-RVIIMLVKAGA 85 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~a-dvIi~~vp~~~ 85 (487)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .... . ..+-.=+.+..
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGG--------------RTGN---IVRAVVCDVGDPD 96 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHSS---CEEEEECCTTCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCC---eEEEEEcCCCCHH
Confidence 45555 4 78999999999999999999999999887766543211 1110 1 12222244555
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+=+++|++...
T Consensus 97 ~v~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 97 QVAALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776655556788887654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.1 Score=49.32 Aligned_cols=83 Identities=10% Similarity=0.090 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----------------G---GEAESHACDLSHSD 91 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------C---CceeEEEecCCCHH
Confidence 455555 799999999999999999999999998877765533210 0 222222 234445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+=++||++...
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 92 AIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5666666666555556778877654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.07 Score=50.16 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=52.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+ .. +. . .++..+ +...+
T Consensus 3 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~--------------~~--~---~~~~~~---d~~~v 59 (254)
T 1zmt_A 3 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FA--------------ET--Y---PQLKPM---SEQEP 59 (254)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HH--------------HH--C---TTSEEC---CCCSH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HH--------------hc--C---CcEEEE---CHHHH
Confidence 454555 7899999999999999999999999887655432 11 00 1 222222 44567
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++.+.....+=+++|+....
T Consensus 60 ~~~~~~~~~~~g~iD~lv~nAg~ 82 (254)
T 1zmt_A 60 AELIEAVTSAYGQVDVLVSNDIF 82 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCc
Confidence 77777666555455777776654
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.1 Score=51.51 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcEEEE-eC-ChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPISVY-NR-TTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~l~~ 48 (487)
+||||+|.|++|+.+.+.|.+++ ++|... |+ +++....+.+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~ 48 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLE 48 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhc
Confidence 59999999999999999998873 566544 54 5555555543
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.6 Score=44.67 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=71.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH-HHhhCCCCCCCcCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK-AYDRNADLANLLVD 402 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~-~~~~~~~~~~ll~~ 402 (487)
.+++...|.+.|++.+..+..+.|++.+.++. +++..++.+.+..+. ..|+.+..... .++.+. ....
T Consensus 168 ~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~l~~~~-~~g~--- 236 (299)
T 1vpd_A 168 IGAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNF-KPGF--- 236 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCC-CCSS---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccC-CCCHHHHHhhhHhhcCCC-CCCC---
Confidence 36778899999999999999999999987653 389999999998874 46666554333 332221 1111
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 441 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~ 441 (487)
.... ....++.++..|.+.|+|+|...+....+.
T Consensus 237 -~~~~----~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~ 270 (299)
T 1vpd_A 237 -RIDL----HIKDLANALDTSHGVGAQLPLTAAVMEMMQ 270 (299)
T ss_dssp -BHHH----HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred -ChHH----HHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 1111 112458899999999999999888776554
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.14 Score=51.46 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC-------CCccccC-CHHHHHhhcCCC
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD-------LPLFGFR-DPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~-------~~~~~~~-s~~e~~~~l~~a 74 (487)
||+-.+|.|++|++ ++..|.++|++|+..|++...++.+.+++.-. |. .+++... ..+++.+.+..+
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 68889999999977 56677889999999999999999998764210 00 0222221 223444444559
Q ss_pred cEEEEecCCChhHHHHHHHHhhcc--------cCCCEEEecCCCCchhHHHHH
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYM--------EKGDCIIDGGNEWYENTERRE 119 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l--------~~g~iiId~st~~~~~~~~~~ 119 (487)
|+|.+++... ..+.+...|...| .++-+|+.|-|.. .....+.
T Consensus 81 dlitT~vG~~-~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~-~ng~~lk 131 (382)
T 3h2z_A 81 DLVTTAVGPV-VLERIAPAIAKGLVKRKEQGNESPLNIIACENMV-RGTTQLK 131 (382)
T ss_dssp SEEEECCCHH-HHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSST-THHHHHH
T ss_pred CEEEECCCcc-cHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCcc-chHHHHH
Confidence 9998888642 3343332222211 2445677777754 3443443
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.035 Score=55.05 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=31.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
+.+|.|||.|.+|.+.|..|++.|++|+++|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 4589999999999999999999999999999863
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.034 Score=53.10 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=33.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
||+|-|.|+|.+|+.++..|++.|++|++.+|++++
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 578999999999999999999999999999998765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.14 Score=48.99 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=55.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 66 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG-----------------GN---AVGVVGDVRSLQDQ 66 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC-----------------Cc---EEEEEcCCCCHHHH
Confidence 344555 7899999999999999999999999988776554211 00 22222223444566
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|+....
T Consensus 67 ~~~~~~~~~~~g~iD~lvnnAg~ 89 (281)
T 3zv4_A 67 KRAAERCLAAFGKIDTLIPNAGI 89 (281)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 67777766655556788877654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.12 Score=47.84 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
.++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34677777 5999999999999999999999999887766544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.35 Score=43.79 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC-Cccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-PLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|--||+|. | .++..+++.+.+|+++|.+++.++.+.+.....+-. ++.. ..+..+........|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 5788999987 4 355556666899999999999887766543221100 1222 23444433333458999876532
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..+ +++.+...+++|-.++-.+ ..+....+..+.+.+.|.....
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVANA-VTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEEE-CSHHHHHHHHHHHHHHCSEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEEe-cCcccHHHHHHHHHhCCCcEEE
Confidence 345 7788888888876555332 3345666667777777765544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.19 Score=47.47 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=55.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+|-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+..... . .. .. ...+..=+.+...+
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~-~~----~~---~~~~~~D~~~~~~v 73 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-------F-EP----QK---TLFIQCDVADQQQL 73 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-------S-CG----GG---EEEEECCTTSHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-------c-CC----Cc---eEEEecCCCCHHHH
Confidence 466665 789999999999999999999999988776554432110 0 00 01 11222223444566
Q ss_pred HHHHHHHhhcccCCCEEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+++++.....+=+++|+.....
T Consensus 74 ~~~~~~~~~~~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 74 RDTFRKVVDHFGRLDILVNNAGVN 97 (267)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 666666665555557888876543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.19 Score=47.96 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=53.5
Q ss_pred cEEE-Ec-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGL-AG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgi-IG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+ .| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.++ =+.+.
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~ 85 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG----------------------SKAFGVRVDVSSA 85 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC----------------------TTEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEecCCCH
Confidence 4444 45 7899999999999999999999999988776654321 112222 23444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 86 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 86 KDAESMVEKTTAKWGRVDVLVNNAGF 111 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 55666666666555555777776553
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.093 Score=52.56 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcEEEE-eC-ChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPISVY-NR-TTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~l~~ 48 (487)
+||||+|+|++|+.+.+.|.+++ ++|... |+ +++....+.+
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~ 48 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLE 48 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhc
Confidence 59999999999999999998863 566554 54 5555555543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.088 Score=49.60 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=56.3
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| |.|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~ 73 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA----------------G---GKAIGLECNVTDE 73 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCH
Confidence 45555 4789999999999999999999999998877765532210 0 233332 24444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 74 ~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 74 QHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56677777766655556788877654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.21 Score=43.44 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhc-CCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDL-PLFGFRDPESFVNSI-QKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l-~~advIi~~vp~ 83 (487)
.+|--||+|. | .++..+++. +.+|+++|.+++.++.+.+.....+-. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 4788999997 4 455556655 679999999999887766543221100 122222332222222 348999987654
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.. ..+++.+...+++|..++-.. ..+.......+.+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcCCeeEEE
Confidence 42 556777888888877665433 33344455566677777655543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.13 Score=48.22 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=53.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
+|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 15 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~D~~~~~ 75 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM----------------EG---HDVSSVVMDVTNTE 75 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CceEEEEecCCCHH
Confidence 466665 79999999999999999999999998876655432211 00 222222 233444
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=++||++...
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 76 SVQNAVRSVHEQEGRVDILVACAGI 100 (260)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666655544445777776653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.21 Score=49.45 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 50 (487)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 216 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 479999999999999888888898 8999999999887766544
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.25 Score=46.54 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
++-|.| .|-+|..+|+.|++.|++|.+. +|++++.+++.+..... . .++.++ =+.+.
T Consensus 6 ~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 66 (258)
T 3oid_A 6 CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL----------------G---VKVLVVKANVGQP 66 (258)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT----------------T---CCEEEEECCTTCH
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCH
Confidence 354555 7899999999999999999985 99988877665533210 0 233333 24445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
..++.+++.+.....+=+++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 67 AKIKEMFQQIDETFGRLDVFVNNAA 91 (258)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5677777777665555578887764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=48.57 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=51.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. -.. ..++..=+.+...+
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~Dv~~~~~v 68 (257)
T 3tpc_A 9 VFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------------GAA---VRFRNADVTNEADA 68 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------------CCc---eEEEEccCCCHHHH
Confidence 344555 689999999999999999999999988765543211 011 23333334455567
Q ss_pred HHHHHHHhhcccCCCEEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+++.+.....+=+++|+.....
T Consensus 69 ~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 69 TAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 777777666555567888876543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.083 Score=52.69 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=57.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+. +.. .+.-..+.+.+.+.....|+||-++.....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~----~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD----SFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS----EEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc----eEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 479999999999999999999999999999999988776532 211 011112222222211246788877765433
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++..+ +.+.++-.++..+.
T Consensus 265 ~~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 LLPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp SHHHH----HHEEEEEEEEECCC
T ss_pred HHHHH----HHHhcCCEEEEEcc
Confidence 33333 33344445555543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.19 Score=47.46 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=57.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .|-+|..+|+.|++.|++|++.+|++++.+++.+.... .. . .++.++ =+.+.
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~~-~---~~~~~~~~Dv~~~ 82 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE--------------QF-G---TDVHTVAIDLAEP 82 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HH-C---CCEEEEECCTTST
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--------------hc-C---CcEEEEEecCCCH
Confidence 44455 4 78999999999999999999999999887766543211 00 1 233332 24555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 83 ~~v~~~~~~~~~~~g~id~lv~nAg~ 108 (266)
T 4egf_A 83 DAPAELARRAAEAFGGLDVLVNNAGI 108 (266)
T ss_dssp THHHHHHHHHHHHHTSCSEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 67777777776665555778876654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.12 Score=54.68 Aligned_cols=125 Identities=15% Similarity=0.040 Sum_probs=67.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..+|.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.++.+ .+++-+...+..
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i-NP~V~v~~~~~~ 404 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLS 404 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh-CCCcEEEEeecc
Confidence 3589999999999999999999997 899999875222222211100 0000000111222222222 155555554321
Q ss_pred ---------hh--HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 ---------AP--VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ---------~~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.. .....+.+...+..-++|||++-.. ..-..+...+...++.++.+.
T Consensus 405 Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~-~tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 405 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR-ESRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp CCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSG-GGTHHHHHHHHHTTCEEEEEE
T ss_pred ccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCH-HHHHHHHHHHHHcCCeEEEEE
Confidence 00 0111122334455678999987654 333345566677888888753
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.16 Score=48.43 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=54.4
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 85 (487)
+-|.| .|-+|..+|+.|++.|++|.+.++ ++++.+++.+..... . .++.++ =+.+..
T Consensus 32 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~~ 92 (280)
T 4da9_A 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL----------------G---ARVIFLRADLADLS 92 (280)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSGG
T ss_pred EEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 44455 789999999999999999999985 777666555432110 1 233332 245556
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|+....
T Consensus 93 ~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 93 SHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp GHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 7777777777665556788877654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.03 Score=52.24 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
|++|-|.| .|.+|..+++.|++.|++|++.+|++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~ 37 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQAD 37 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 45688887 5999999999999999999999998754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.14 Score=49.99 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
||+|-|.| .|.+|+.++..|++.|++|++.+|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence 56899998 7999999999999999999999985
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.2 Score=46.76 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=52.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 83 (487)
++|-|.| .|-+|..+++.|++.|++|.+.+|++ ++.++..+.. . .++.++ =+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------------~---~~~~~~~~Dv~~ 65 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-------------------G---RRVLTVKCDVSQ 65 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-------------------T---CCEEEEECCTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-------------------C---CcEEEEEeecCC
Confidence 3455665 88999999999999999999999998 6654311110 0 122222 2334
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...++.+++.+.....+=+++|+....
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (249)
T 2ew8_A 66 PGDVEAFGKQVISTFGRCDILVNNAGI 92 (249)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445666666666555455788876654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.15 Score=47.14 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677777 5899999999999999999999999887766544
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.1 Score=48.65 Aligned_cols=84 Identities=12% Similarity=0.188 Sum_probs=53.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+.+.+..... . .++.++. +.+.
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 72 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----------------G---GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh----------------C---CceEEEEcCCCCH
Confidence 3566665 699999999999999999999999988776654432110 0 2222222 3333
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=++||++...
T Consensus 73 ~~~~~~~~~~~~~~~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 73 QELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45556665555444445677776654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.26 Score=46.30 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=53.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+|-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+... . . ...+-.=+.+...+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~------~---~~~~~~D~~d~~~v 73 (263)
T 3ak4_A 14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----------N------G---GFAVEVDVTKRASV 73 (263)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT-----------T------C---CEEEECCTTCHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----------c------C---CeEEEEeCCCHHHH
Confidence 466665 7899999999999999999999999887765543210 0 1 22222223444556
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=++||++...
T Consensus 74 ~~~~~~~~~~~g~iD~lv~~Ag~ 96 (263)
T 3ak4_A 74 DAAMQKAIDALGGFDLLCANAGV 96 (263)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 66666665544445777776653
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.21 Score=46.88 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+... .. ...+..=+.+...
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 65 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------------DA---ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---eeEEEecCCCHHH
Confidence 3566666 6899999999999999999999999887766543210 01 1222222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|+....
T Consensus 66 ~~~~~~~~~~~~g~iD~lv~nAg~ 89 (254)
T 1hdc_A 66 WQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555455778876654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.19 Score=47.59 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=55.3
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| |.|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.++ =+.+.
T Consensus 28 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~ 85 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG----------------------KDVFVFSANLSDR 85 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEeecCCH
Confidence 44455 47899999999999999999999999988776544211 122222 23444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..++.+++.+.....+=+++|+.....
T Consensus 86 ~~v~~~~~~~~~~~g~iD~lvnnAg~~ 112 (266)
T 3grp_A 86 KSIKQLAEVAEREMEGIDILVNNAGIT 112 (266)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 566677766666555557888876543
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.098 Score=51.71 Aligned_cols=41 Identities=12% Similarity=0.352 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHH---C-CCcEEEE-eC-ChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAE---K-GFPISVY-NR-TTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~---~-G~~V~v~-dr-~~~~~~~l~~ 48 (487)
+||||+|.|++|+.+.+.|.+ + .++|... |+ +++....+.+
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~ 49 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLK 49 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhc
Confidence 599999999999999999988 4 4666644 44 4555555553
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.074 Score=47.81 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=35.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|+| .|.+|..+++.+...|.+|++.++++++.+.+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS 80 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5788999 699999999999999999999999988776554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.16 Score=48.13 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=55.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 92 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc----------------C---CeEEEEEeeCCCH
Confidence 3566665 789999999999999999999999988776655432110 0 222222 23344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=++||++...
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence 45666666666555555788887654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.19 Score=47.94 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=53.7
Q ss_pred cEEEEcc-cH--HHHHHHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAGL-AV--MGQNLALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+|-|.|. |. +|..+|+.|++.|++|.+.+|+. +.++++.+.. ....++..=+.+
T Consensus 28 ~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~---------------------~~~~~~~~Dl~~ 86 (280)
T 3nrc_A 28 KILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEF---------------------NPAAVLPCDVIS 86 (280)
T ss_dssp EEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGG---------------------CCSEEEECCTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhc---------------------CCceEEEeecCC
Confidence 4556674 56 99999999999999999999987 3333332211 012233233445
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...++.+++++.....+=+++|++....
T Consensus 87 ~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 87 DQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 5567777777776665667888876654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.13 Score=50.71 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=36.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-CC-cEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|++. |+ +|++++|++.+.+.+.+
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~ 65 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM 65 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH
Confidence 5799998 699999999999999 97 99999999888766654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.027 Score=55.92 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC---cEEEE-eCC-hHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF---PISVY-NRT-TSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~---~V~v~-dr~-~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~ 79 (487)
+|||+|+| .|.+|+.+.+.|.+.+| ++... +++ ..+.-.+. +. .+...+ ++++ .+ ++|+||+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~--g~-----~i~~~~~~~~~-~~---~~DvV~~ 74 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA--ES-----SLRVGDVDSFD-FS---SVGLAFF 74 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET--TE-----EEECEEGGGCC-GG---GCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccC--Cc-----ceEEecCCHHH-hc---CCCEEEE
Confidence 36899999 89999999999997665 44544 432 21100000 00 111111 2222 23 3999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|+|.. ...+.... ++..|..+||.|...
T Consensus 75 a~g~~-~s~~~a~~---~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-VSRAHAER---ARAAGCSVIDLSGAL 102 (340)
T ss_dssp CSCHH-HHHHHHHH---HHHTTCEEEETTCTT
T ss_pred cCCcH-HHHHHHHH---HHHCCCEEEEeCCCC
Confidence 99865 23333333 345688899998765
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.24 Score=47.08 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=55.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
++-|.| .|-+|..+|+.|++.|++|.+.+|+.++.++..+.... .. . .++.++. +.+..
T Consensus 29 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~-~---~~~~~~~~Dv~~~~ 90 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG--------------AT-G---RRCLPLSMDVRAPP 90 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--------------HH-S---SCEEEEECCTTCHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--------------hc-C---CcEEEEEcCCCCHH
Confidence 344555 67899999999999999999999998887665543210 00 1 2333332 44455
Q ss_pred hHHHHHHHHhhcccCCCEEEecCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.++.+++.+.....+=+++|++..
T Consensus 91 ~v~~~~~~~~~~~g~id~lv~nAg 114 (277)
T 4fc7_A 91 AVMAAVDQALKEFGRIDILINCAA 114 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCc
Confidence 667777776665555678888765
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.25 Score=46.02 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=53.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+.. . ...+..=+.+...+
T Consensus 7 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------------~---~~~~~~D~~~~~~~ 64 (245)
T 1uls_A 7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------------------G---AHPVVMDVADPASV 64 (245)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------------------T---CEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------------------C---CEEEEecCCCHHHH
Confidence 566666 789999999999999999999999988766554311 0 12222223344456
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|++...
T Consensus 65 ~~~~~~~~~~~g~id~lvn~Ag~ 87 (245)
T 1uls_A 65 ERGFAEALAHLGRLDGVVHYAGI 87 (245)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665555455778776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 487 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-132 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-120 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 9e-31 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-30 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 1e-21 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 1e-20 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 2e-16 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 8e-11 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 1e-06 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 3e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.001 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 382 bits (983), Expect = e-132
Identities = 148/296 (50%), Positives = 195/296 (65%), Gaps = 5/296 (1%)
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243
G+G+FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEE 303
I +D G +L+ K+ D G KGTGKWT A + V I ++ AR LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 304 RVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 363
R++A+K K DK+ ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 120 RIQASKKLKGPQ---NIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTL 176
Query: 364 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423
G +A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR +
Sbjct: 177 NYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTG 236
Query: 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 478
+ +GI P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 237 VQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 292
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 351 bits (902), Expect = e-120
Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 9/303 (2%)
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEIT 242
G+G+ VKM HN EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKE 302
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K
Sbjct: 60 IAAARAKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 303 ERVEAAKVFK--SGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 360
ER A + G I + ++ + I YAQ +R
Sbjct: 119 ERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHN 178
Query: 361 WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 420
+ L L ++ GCI++ L + +A+++N +++NL+ F EI +R +V
Sbjct: 179 FGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLM--CAFQTEIRAGLQNYRDMV 236
Query: 421 CL-AINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
L +S P +S+SL Y + L LV QRD FG H YER+D +G +W
Sbjct: 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 296
Query: 479 FKI 481
++
Sbjct: 297 PEL 299
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 115 bits (287), Expect = 9e-31
Identities = 82/179 (45%), Positives = 112/179 (62%), Gaps = 4/179 (2%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESF 67
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ A L F E+F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
S++KPR ++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GSG
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMN---GSG 178
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 115 bits (287), Expect = 1e-30
Identities = 82/172 (47%), Positives = 112/172 (65%), Gaps = 2/172 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + K + G E V
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+L
Sbjct: 62 SKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V
Sbjct: 122 FVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWV 173
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 89.5 bits (221), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I GL MG +A N+ + G+ ++V++ S VD V R
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA-------GASAARSARDA 54
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V ++ + + L A++ G +++ + + A E GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQV 170
L VSGG GA G + M GG EA + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG+ ++ N+ + G+ + V +R + + + +
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTA----------K 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
++ VII ++ V E + + G +ID + + A+
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQV 170
G+ L VSGGE A G S+M GG + D++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 74.5 bits (182), Expect = 2e-16
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++ GL MG +A ++A + FP V+NRT K E +
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEFG-----------SEAVPL 49
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ + RVI + V E + L Y+ +G +D + E + R + + E G+
Sbjct: 50 ERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 129 YLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGP 175
YL VSGG GA G ++M GG EA + + L A +V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 58.3 bits (140), Expect = 8e-11
Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 15/148 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
R+G G + Q LA + +G + S R +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETS----------E 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ V+I V G + + +D N E + + G
Sbjct: 52 EDVYSCPVVISAVTPGVALGAARRAGRHV---RGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAY 156
++ + G ++ G
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE 134
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 46.3 bits (108), Expect = 1e-06
Identities = 21/170 (12%), Positives = 54/170 (31%), Gaps = 17/170 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GL ++G +LA ++ +G + +R S ++ VE + +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE---------RQLVDEAGQDL 52
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ +Q ++I + + K + + + +G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 129 YLGMGVSGGEEGARHGP--------SLMPGGSFEAYKYIEDILLKVAAQV 170
+ + G +GA + E + +L + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 7/162 (4%), Positives = 32/162 (19%), Gaps = 18/162 (11%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
+ G + + + ++ + +R+ + E +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+ + + + G + ++
Sbjct: 62 IVPDRYIKTVA------------NHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 130 LGMGVSGGEEGARH-GPSLMPGGSFEAYKYIEDILLKVAAQV 170
S + G ++ I +++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 38.0 bits (87), Expect = 0.001
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-----PLFGFRD 63
+ GL G A +A KG + ++ ++ E +R +
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCII 105
+++ VI+++V A +++Y+ +G II
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLII 103
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 487 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.96 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.94 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.87 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.86 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.83 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.71 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.64 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.58 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.56 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.54 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.45 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.44 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.43 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.42 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.41 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.4 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.37 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.34 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.23 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.12 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.89 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.87 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.83 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.81 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.75 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.73 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.71 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.67 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.67 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.64 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.64 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.55 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.38 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.33 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.33 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.33 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.23 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.23 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.22 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.2 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.19 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.17 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.1 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.09 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.05 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.04 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.04 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.99 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.99 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.93 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.91 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.87 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.86 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.84 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.82 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.76 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.76 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.75 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.74 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.74 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.69 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.66 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.64 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.62 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.62 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.6 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.59 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.56 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 97.5 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.48 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.43 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.42 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.38 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.37 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.33 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 97.31 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.3 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.27 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.25 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.21 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.21 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.2 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.16 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.15 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.12 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.11 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.09 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.07 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.04 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.01 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.01 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.0 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.95 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.94 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.89 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.89 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.86 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.86 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.85 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.83 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.81 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.79 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.72 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.63 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.6 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.59 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.51 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.47 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.47 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.46 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.42 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.41 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.39 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.34 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.33 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.31 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.29 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.25 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.23 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.22 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.2 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.2 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.15 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.14 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 96.04 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.03 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.02 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.02 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 96.02 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.98 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.94 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.94 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.93 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.93 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.93 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.91 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.86 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.85 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.85 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.85 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.84 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.83 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.82 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.79 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.79 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.71 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.67 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.66 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.64 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.64 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.63 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.6 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 95.54 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.42 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.42 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.41 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.39 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.38 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.38 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 95.34 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.32 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.3 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.29 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.29 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.16 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.15 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.13 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.11 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.07 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.07 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.05 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.04 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.99 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.98 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.93 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.86 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.85 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 94.84 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.82 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.81 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.79 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.78 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.77 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.77 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.75 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 94.66 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.66 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.59 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.56 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.51 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.45 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.42 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.34 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.3 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.3 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.27 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.26 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.26 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 94.22 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.16 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 94.15 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.13 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.1 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.08 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.06 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.04 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.04 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.97 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.93 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.85 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.74 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.68 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.67 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.64 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.53 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.48 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.43 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 93.38 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.32 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.26 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.23 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.1 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.02 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.93 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.78 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 92.7 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.65 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.59 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.48 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.3 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.16 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.15 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 92.11 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.08 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.05 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.04 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.99 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.98 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.97 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.83 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.82 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 91.78 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.56 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 91.36 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 91.25 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.99 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 90.91 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 90.8 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.79 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.69 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.65 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.46 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 90.32 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 90.26 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.14 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.99 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 89.85 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 89.66 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 89.6 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 89.57 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.45 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 89.4 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 89.31 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 89.29 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.29 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 89.23 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.14 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 89.02 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 88.75 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.71 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.71 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 88.65 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 88.08 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.75 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.22 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 86.65 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 86.42 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.39 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 86.37 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 86.37 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 86.21 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 86.15 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 85.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 85.95 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 85.76 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 85.61 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 85.58 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.5 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.36 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.2 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 85.0 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 84.52 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 84.48 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.36 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 84.27 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.75 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.72 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 83.69 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.64 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 83.56 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 83.45 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 83.32 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.95 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 82.8 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.76 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 82.42 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 82.41 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 82.39 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 82.35 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 82.28 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 82.15 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 82.14 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 81.8 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 81.56 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 81.47 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.34 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 81.06 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 80.91 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 80.86 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.49 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 80.24 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 80.15 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 80.03 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=1.6e-79 Score=596.45 Aligned_cols=295 Identities=50% Similarity=0.854 Sum_probs=278.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~ 263 (487)
|+||+||||||+|+|++||+++|++.++++..|++++++.++|+.|+.+.++||+++++.++++.++. ...+++|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999864499999999999999999999999999999987653 34578999999
Q ss_pred ccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 011394 264 KTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKIC 343 (487)
Q Consensus 264 ~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ai~~~~~~ 343 (487)
.++|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.++++... ....+...|+++||||++|++|+
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~---~~~~~~~~~i~~l~~al~~~~i~ 156 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI---PFEGDKKSFLEDIRKALYASKII 156 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC---CCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766431 13446789999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhhHHHHHHHH
Q 011394 344 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 423 (487)
Q Consensus 344 ~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a 423 (487)
+|+|||++|++++++++|++|+.+|+++||+||||||+||+.+.++|++++++.|+++++.|.+.+++..+.|||+|..|
T Consensus 157 syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v~~a 236 (297)
T d2pgda1 157 SYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTG 236 (297)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCcc-ccccccCC
Q 011394 424 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEWFKIA 482 (487)
Q Consensus 424 ~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~-h~~w~~~~ 482 (487)
++.|+|+|++++||+||++++++++|+|+|||||||||+|||+|+|+||.| |++|++++
T Consensus 237 i~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 237 VQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999975 99999764
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=5.3e-77 Score=580.89 Aligned_cols=293 Identities=29% Similarity=0.528 Sum_probs=266.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcc-CcchhhhHhhhccccccccCCCCchhHHhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVL 262 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~-~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~ 262 (487)
|+||+||||||+|+|++||+++|++.+++..+ ++++++.++|+.|+. +.++|||++++.++++.+++ .+.+++|.|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999877 999999999999965 57899999999999987664 4568999999
Q ss_pred hccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCC--CCCCCccchhhHHHHHHHHHHHH
Q 011394 263 DKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFG--VQSNQAVDKQKLIDDVRQALYAS 340 (487)
Q Consensus 263 ~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~ai~~~ 340 (487)
|.++|||||+|++++|.++|+|+|++.+||++|++|+.+++|..+++.++++.+. .........++|+++||||++||
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~ 158 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIA 158 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866421 00001235788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhhHHHHH
Q 011394 341 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 420 (487)
Q Consensus 341 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v 420 (487)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.+.++|+++|++.+++. .|...+.+....++++|
T Consensus 159 ~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~v 236 (300)
T d1pgja1 159 IISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMV 236 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888773 47777777777776666
Q ss_pred H-HHHHcCCChHHHHHHHHHHHhhcCCCch-hhHHHHHhhccCCcccccccCCCcccccccc
Q 011394 421 C-LAINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480 (487)
Q Consensus 421 ~-~a~~~g~p~p~~~aal~~~~~~~~~~~~-~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~ 480 (487)
. .+.+.|+|+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 237 ~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 5 5778899999999999999999999999 6999999999999999999999999999986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=5.9e-32 Score=245.43 Aligned_cols=174 Identities=47% Similarity=0.789 Sum_probs=158.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+.+|||||+|+||.+||++|+++||+|++|||++++++++.+.+... .....+.+.++++..+..+|.+++++|++.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG--TKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc--ccccchhhhhhhhhhhcccceEEEecCchHH
Confidence 45899999999999999999999999999999999999998765431 1233566777777766679999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
+.++++++.+.+.+|++|||+||..|.++.++.+.+.++|++|+++||+|++..|+.|.++|+||+++++++++|+|+.+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~ 159 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCC
Q 011394 167 AAQVPDSGPCVTYVSK 182 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~ 182 (487)
+.++..++||+.|+|+
T Consensus 160 ~~kv~~g~~c~~~~G~ 175 (176)
T d2pgda2 160 AAKVGTGEPCCDWVGD 175 (176)
T ss_dssp SCBCTTSCBSCCCCEE
T ss_pred hcccCCCCcCceeeCC
Confidence 9998889999999987
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=9e-32 Score=240.64 Aligned_cols=157 Identities=22% Similarity=0.341 Sum_probs=147.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|+||.+||++|+++||+|++|||++++.+++.+.+ ...+.+++|++++ +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 7899999999999999999999999999999999999988765 4678899999998 99999999999999
Q ss_pred HHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 88 DETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..|+.|+ ++|+||+++.+++++++|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9998 568888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCeEEEeC
Q 011394 164 LKVAAQVPDSGPCVTYVS 181 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G 181 (487)
+.++.+ ++|+|
T Consensus 151 ~~~~~~-------i~~~G 161 (161)
T d1vpda2 151 KAMAGS-------VVHTG 161 (161)
T ss_dssp HTTEEE-------EEEEE
T ss_pred HHhcCc-------eEECC
Confidence 999976 58876
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.1e-30 Score=233.72 Aligned_cols=158 Identities=25% Similarity=0.359 Sum_probs=146.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+...+ .....++.|++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 67999999999999999999999999999999999999887654 3567889999887 9999999999988
Q ss_pred HHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++. ++.+.+.+|++|||+||+.|..+.++.+.++++|++|+++||+||+.+|++|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeC
Q 011394 163 LLKVAAQVPDSGPCVTYVS 181 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G 181 (487)
|+.++.+ ++|+|
T Consensus 151 l~~~~~~-------v~~~G 162 (162)
T d3cuma2 151 FEAMGRN-------IFHAG 162 (162)
T ss_dssp HHHHEEE-------EEEEE
T ss_pred HHHHcCc-------cEECc
Confidence 9999976 58876
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=1.4e-28 Score=223.38 Aligned_cols=176 Identities=45% Similarity=0.758 Sum_probs=155.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||||||+|+||.+||++|+++||+|.+|||++++.+++.+.+..... .......+.+++...+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 699999999999999999999999999999999999999887643110 0234456777888777789999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.++..+...+.+++++||+||..|.++.++.+.+.+++++|+++||+|++.+|+.|+++|+||+++.+++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhh
Q 011394 167 AAQVPDSGPCVTYVSKGGSG 186 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g 186 (487)
+.++.++.+ |+|+.|+|
T Consensus 162 ~~~~~~~~~---~~g~~G~G 178 (178)
T d1pgja2 162 AAKADDGRP---CVTMNGSG 178 (178)
T ss_dssp SCBCTTSCB---SCCCCCST
T ss_pred hccccCCCC---ccCCCCCC
Confidence 988633333 67887765
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.1e-27 Score=210.90 Aligned_cols=154 Identities=29% Similarity=0.363 Sum_probs=136.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
||||||+|+||.+||++|.++|+.| +|||++++..++.+.+. ...... +.+.+ +|++|+++|++.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVPL-ERVAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECCG-GGGGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Cccccc-ccccc---eeEEEecccchhhhh
Confidence 7999999999999999999998865 78999998888776553 123333 44444 899999999998888
Q ss_pred HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ig 167 (487)
.+..++.+.+.++.++||+||..|..++++.+.++++|++|+|+||+||+.+|.+|+ ++|+||+++++++++|+| .++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-Hhc
Confidence 888999999999999999999999999999999999999999999999999999999 999999999999999999 488
Q ss_pred ccCCCCCCeEEEeCC
Q 011394 168 AQVPDSGPCVTYVSK 182 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~ 182 (487)
.+ ++|+||
T Consensus 149 ~~-------v~~~GP 156 (156)
T d2cvza2 149 KK-------VVHVGP 156 (156)
T ss_dssp EE-------EEEEES
T ss_pred Cc-------CEEeCc
Confidence 76 699986
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.87 E-value=2.5e-23 Score=200.37 Aligned_cols=118 Identities=8% Similarity=0.084 Sum_probs=97.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
|+||||||||||||||+||+|+|+|++|+++...++ .++.+|++.|+.| .++||||+++.+++++.+...+.++|.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~--~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I 77 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGH--KEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKI 77 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH--HHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhh
Confidence 689999999999999999999999999997532222 4566777779998 8999999999999976543456777888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
.+..-++++| +|+|++|+++|+|+|+|++||+ ++++.+.+|
T Consensus 78 ~d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R 120 (297)
T d2pgda1 78 RDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDER 120 (297)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred hccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhcccHHHH
Confidence 8888888899 9999999999999999999996 455444433
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.86 E-value=4e-23 Score=199.69 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=98.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL-KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l-~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
|+||||||||||||||+||.++|+|++|+.. +++. ++.+|++.|++|.+++||||+++.+++++.++....++|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~----~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~ 76 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEH 76 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHH
Confidence 6899999999999999999999999999753 3222 5777888898776999999999999998755445678888
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 447 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~ 447 (487)
+.+.+.++++| +|++++|+++|+|+|+|++|+. ++++++.+|
T Consensus 77 I~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R 120 (300)
T d1pgja1 77 VMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER 120 (300)
T ss_dssp BCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHH
T ss_pred hcccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHH
Confidence 88888889999 9999999999999999999996 555565554
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.86 E-value=6.3e-22 Score=174.31 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=120.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|.||++||++|+++||+|++||+++++...+...+. ....+++|+++. +|+||+|||++ +.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-------GVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-------TCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc-------cccccHHHHHhh---cCeEEEEecCc-hH
Confidence 79999999999999999999999999999998887766665543 356789999988 99999999987 45
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~i 166 (487)
.+++..+.+.+ ++++||+||..|..++++++.+++ ..|+++|++|++..+..+. .++.|++.+.+++ |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~--~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK--GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS--SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc--cCCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66666666654 789999999999999888887654 4599999999999998888 5555556555543 6777
Q ss_pred hccCCCCCCeEEEeCC
Q 011394 167 AAQVPDSGPCVTYVSK 182 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~ 182 (487)
|.+ +.++|+
T Consensus 142 g~~-------i~~~G~ 150 (152)
T d1i36a2 142 GLN-------IEVRGR 150 (152)
T ss_dssp TCE-------EEECSS
T ss_pred CCe-------eeEcCC
Confidence 865 577875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.83 E-value=1.8e-20 Score=167.15 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=115.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|.||++||++|.++||+|++|||+++.++++.+.+. +....+..+.+++ +|+||+|+|+. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~------~~~~~~~~~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL------VDEAGQDLSLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS------CSEEESCGGGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc------cceeeeecccccc---cccccccCcHh-hh
Confidence 79999999999999999999999999999999999888776542 2223334445555 99999999975 79
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH-cCCeEEecCCCCChhhhcC----CC-ccc---cCCCHHHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LGLLYLGMGVSGGEEGARH----GP-SLM---PGGSFEAYKY 158 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~~~i~~pvsgg~~~a~~----G~-~i~---~gg~~~~~~~ 158 (487)
+++++++.+.+.++.+|+|+++..........+.... .+.|.+..|..+|+..+.. +. .++ .+++++.++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 9999999999999999999998875554443332211 1344555566666655542 33 333 4789999999
Q ss_pred HHHHHHHHhcc
Q 011394 159 IEDILLKVAAQ 169 (487)
Q Consensus 159 v~~ll~~ig~~ 169 (487)
++++|+.+|.+
T Consensus 151 v~~l~~~lG~~ 161 (165)
T d2f1ka2 151 LRSVLEPLGVK 161 (165)
T ss_dssp HHHHHGGGTCE
T ss_pred HHHHHHHhCCE
Confidence 99999999987
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=6.2e-20 Score=161.43 Aligned_cols=149 Identities=7% Similarity=-0.020 Sum_probs=111.8
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE 89 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~ 89 (487)
|||||+|+||++|+.+|.+.++.+.+|||++++.+++.+.+. ..+.+++|+++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-------~~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-------GKAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-------CCCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-------ccccchhhhhcc---CcEEEEeccch-hhhH
Confidence 799999999999999997765556799999999999988764 235677777776 99999999986 6777
Q ss_pred HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHHHhc
Q 011394 90 TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAA 168 (487)
Q Consensus 90 vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ig~ 168 (487)
++.++. .++++|||+|+..+....+ .....+++++.+|+.++...+..+. .++++||+++++.++++|+.+|.
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~ 144 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 144 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCC
Confidence 765542 4789999999998765432 2233467788888888777766655 78889999999999999999997
Q ss_pred cCCCCCCeEEEeCC
Q 011394 169 QVPDSGPCVTYVSK 182 (487)
Q Consensus 169 ~~~~~~~~~~~~G~ 182 (487)
+ ++++++
T Consensus 145 ~-------~~~i~~ 151 (153)
T d2i76a2 145 K-------YFVIPS 151 (153)
T ss_dssp C-------EEECCG
T ss_pred c-------EEEeCC
Confidence 6 477754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=2.5e-18 Score=150.88 Aligned_cols=139 Identities=21% Similarity=0.264 Sum_probs=115.0
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 5 ~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
..|+||+||| +|.||.+||++|.++||+|.+||+++.... ++.++. +|++++++|.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~--------------------~~~~~~---~~~v~~~~~~ 63 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA--------------------ESILAN---ADVVIVSVPI 63 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH--------------------HHHHTT---CSEEEECSCG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc--------------------chhhhh---ccccccccch
Confidence 3567999999 999999999999999999999999865422 233444 8999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhhhcCCC-c-cccCCCHHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-S-LMPGGSFEAYKYIE 160 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~a~~G~-~-i~~gg~~~~~~~v~ 160 (487)
. ++..++.++.+.+.++.+|+|++|+.+...+++.+. ...+|+. .|++|++.++..|. . ++.|++++.++++.
T Consensus 64 ~-~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~---~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~ 139 (152)
T d2pv7a2 64 N-LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLL 139 (152)
T ss_dssp G-GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHH
T ss_pred h-hheeeeecccccccCCceEEEecccCHHHHHHHHHH---ccCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHH
Confidence 5 788899999999999999999999998776665543 3456774 69999988888888 3 45688999999999
Q ss_pred HHHHHHhccC
Q 011394 161 DILLKVAAQV 170 (487)
Q Consensus 161 ~ll~~ig~~~ 170 (487)
++|+.+|+++
T Consensus 140 ~ll~~~Ga~v 149 (152)
T d2pv7a2 140 EQIQIWGAKI 149 (152)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHhCCEE
Confidence 9999999873
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.71 E-value=1.1e-16 Score=142.89 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=115.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+.. -...++..+... ..+|+||+|+|..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~~~--~~~dlIila~p~~ 73 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVED--FSPDFVMLSSPVR 73 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGG--TCCSEEEECSCHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----hhhhhhhhhhhc--cccccccccCCch
Confidence 5679999999999999999999996 789999999998887776431 123445544432 1389999999964
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCC----hhhhc----CCC-cccc---CC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGG----EEGAR----HGP-SLMP---GG 151 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg----~~~a~----~G~-~i~~---gg 151 (487)
.+.++++++.+++.++.+|+|++++.....+...+.+.. +|+ ..|+.|. +..+. .|. .+++ +.
T Consensus 74 -~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~ 149 (171)
T d2g5ca2 74 -TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (171)
T ss_dssp -HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred -hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCC
Confidence 788999999999999999999999987776666555433 465 3476664 33333 244 3332 34
Q ss_pred CHHHHHHHHHHHHHHhccC
Q 011394 152 SFEAYKYIEDILLKVAAQV 170 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~ 170 (487)
+++.++.++++|+.+|+++
T Consensus 150 ~~~~~~~v~~~~~~lG~~v 168 (171)
T d2g5ca2 150 DKKRLKLVKRVWEDVGGVV 168 (171)
T ss_dssp CHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 8899999999999999873
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.64 E-value=9.3e-16 Score=134.23 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=106.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|+||++|+.+|.++|++|++|+|++++.+++.++. ++..+.+++++++. +|+||+||++ +++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp-~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GGH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecch-HhH
Confidence 7999999999999999999999999999999999999887654 25678899999997 9999999985 466
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCCc-cccCC--CHHHHHHHHHHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGPS-LMPGG--SFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~~-i~~gg--~~~~~~~v~~ll 163 (487)
++++ +.+.++++||+..++.. ...+.+.+. .+..++ .+|..+. ....|.+ ++.+. +++..+.++++|
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~--~~~l~~~l~-~~~~ivr~mPN~~~--~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGIS--LQRLATFVG-QDLPLLRIMPNMNA--QILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCC--HHHHHHHHC-TTSCEEEEECCGGG--GGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHh----hhcccceeEeccccccc--HHHHHhhhc-ccccchhhccchhh--hcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 6654 55678999998877653 334444442 334455 3463322 1123443 33332 688999999999
Q ss_pred HHHhc
Q 011394 164 LKVAA 168 (487)
Q Consensus 164 ~~ig~ 168 (487)
+.+|.
T Consensus 142 ~~~G~ 146 (152)
T d2ahra2 142 DSFGS 146 (152)
T ss_dssp HTTEE
T ss_pred HhCCC
Confidence 99995
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.58 E-value=1.4e-14 Score=132.79 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=116.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|.+|.++|..|+++||+|++||.|+++++.+.+... .. .++..+++..++++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~--~~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT--GRLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT--TCEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc--cccccCCCHHHHHhh--
Confidence 79999999999999999999999999999999999887653210 10 045677888998887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHh---hcccCCCEEEecCCCCchhHHHHHHHHHH--------cCCeEEec
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLS---AYMEKGDCIIDGGNEWYENTERREKAMAE--------LGLLYLGM 132 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~---~~l~~g~iiId~st~~~~~~~~~~~~l~~--------~g~~~i~~ 132 (487)
+|++++|||++. .+..+++.+. ....++++||..||+.|.+++++...+.+ .++++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 999999999852 3445555444 44568899999999999999887655422 23566777
Q ss_pred CCCCChhhh----cCCCccccCC-CHHHHHHHHHHHHHHhcc
Q 011394 133 GVSGGEEGA----RHGPSLMPGG-SFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 133 pvsgg~~~a----~~G~~i~~gg-~~~~~~~v~~ll~~ig~~ 169 (487)
|-+-.+..+ ..-+.+++|+ +++..+.++++|+.+..+
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 754433222 2233456665 788899999999888654
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=1.1e-15 Score=142.42 Aligned_cols=157 Identities=15% Similarity=0.029 Sum_probs=126.5
Q ss_pred CcEEEEcccH--HHHHHHH------HHHHCCCcEEEEeCChHHHHHHHHhhh----------------hcCC--------
Q 011394 8 TRIGLAGLAV--MGQNLAL------NIAEKGFPISVYNRTTSKVDETVERAK----------------KEGD-------- 55 (487)
Q Consensus 8 ~kIgiIGlG~--mG~~lA~------~L~~~G~~V~v~dr~~~~~~~l~~~~~----------------~~g~-------- 55 (487)
.+++++|+|. ||..++. +|++.|+.|++.|.+++++.+....+. ....
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 3578888887 8888877 789999999999999876422111110 0000
Q ss_pred ------CCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 56 ------LPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 56 ------~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
.+++.++|+.|++++ +|+||+|||.+..+.++++++.+++++|.+|+|+||+.+..+.++.+.+.+++++|
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v 197 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI 197 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred cCCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence 035678999999998 99999999998889999999999999999999999999999999988888889999
Q ss_pred EecCCCCChhhhcCCC--ccccCCCHHHHHHHHHHHHHHhcc
Q 011394 130 LGMGVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 130 i~~pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~ig~~ 169 (487)
++++.+++++. .|. .++.+++++.++++.++|+.+|++
T Consensus 198 i~~hp~a~pe~--~g~~li~~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 198 TSYHPGCVPEM--KGQVYIAEGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp EECBCSSCTTT--CCCEEEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred ECCCccCcCcc--ccceEEecCCCCHHHHHHHHHHHHHHCCC
Confidence 98876666542 343 566778999999999999999976
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.54 E-value=4.9e-15 Score=129.56 Aligned_cols=142 Identities=14% Similarity=0.136 Sum_probs=102.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||||||+|+||.+|+.+|.++| ++|.+|||++++.+++.++. ++...++.+++ ++ +|+||+||++ ++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 79999999999999999999887 89999999999999988764 25566666654 33 9999999985 57
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC--CHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~l 162 (487)
+.++++++. ..++++|+..++.+. ..+.+.+. ...+++ .+|... .....|. .+..+. +++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~~--~~l~~~l~-~~~~iir~mpn~p--~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLSV--GTLSRYLG-GTRRIVRVMPNTP--GKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCCH--HHHHHHTT-SCCCEEEEECCGG--GGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCCH--HHHHHHhC-cCcceEeecccch--hHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 777766553 357899988777643 34444442 223344 345332 2233555 344443 68889999999
Q ss_pred HHHHhc
Q 011394 163 LLKVAA 168 (487)
Q Consensus 163 l~~ig~ 168 (487)
|+.+|.
T Consensus 142 ~~~~G~ 147 (152)
T d1yqga2 142 MKSVGL 147 (152)
T ss_dssp HHTTEE
T ss_pred HHhCCC
Confidence 999995
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=1e-13 Score=118.20 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=93.8
Q ss_pred CchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhh
Q 011394 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKV 261 (487)
Q Consensus 182 ~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i 261 (487)
+.|+|+.+|+++|.+.+.++.+++|++.++++.| +|++++.+++ +.+.++|+.++...+.+..+ +|.|+|.++.+
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~~-~~~~~f~~~l~ 75 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMDR-NFKPGFRIDLH 75 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHTT-CCCCSSBHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhhc-cCCCCchHHHH
Confidence 3699999999999999999999999999999999 9999999998 67888899999888877664 58899999999
Q ss_pred hhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 262 LDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 262 ~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
.||++ ++.+.|+++|+|+|+...+ .+.|..
T Consensus 76 ~KDl~------l~~~~a~~~~~~~p~~~~~-~~~~~~ 105 (133)
T d1vpda1 76 IKDLA------NALDTSHGVGAQLPLTAAV-MEMMQA 105 (133)
T ss_dssp HHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred HHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 99997 9999999999999998865 555543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.44 E-value=6.8e-14 Score=126.52 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=110.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-------CCCccccCCHHHHHhhcCCCcEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-------DLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-------~~~~~~~~s~~e~~~~l~~advIi 78 (487)
.|+||+|||+|.||.++|..|+++||+|++|+|+++.++.+.+.+.+.. ..++.++.+++++++. +|+||
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~ii 82 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIIL 82 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEE
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEE
Confidence 4568999999999999999999999999999999999998877653210 0156778889999887 99999
Q ss_pred EecCCChhHHHHHHHHhhc-----ccCCCEEEecCCCCchhHHH-HHHHHHH----cCCeEEecCCCCChhhhcCCC-c-
Q 011394 79 MLVKAGAPVDETIKTLSAY-----MEKGDCIIDGGNEWYENTER-REKAMAE----LGLLYLGMGVSGGEEGARHGP-S- 146 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~-----l~~g~iiId~st~~~~~~~~-~~~~l~~----~g~~~i~~pvsgg~~~a~~G~-~- 146 (487)
++||.. .++.+++++.+. +.++..||.++.+....+.. ..+.+.+ ..+.++..|-+. .+-++.-+ .
T Consensus 83 iavPs~-~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A-~Ev~~~~pt~~ 160 (189)
T d1n1ea2 83 FVIPTQ-FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA-IEVATGVFTCV 160 (189)
T ss_dssp ECSCHH-HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH-HHHHTTCCEEE
T ss_pred EcCcHH-HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcH-HHHHcCCCcEE
Confidence 999975 788888877653 45677788888776433322 2333322 224455555432 33444444 3
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 011394 147 LMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 147 i~~gg~~~~~~~v~~ll~~ 165 (487)
++++-+.+..+.++++|+.
T Consensus 161 viAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 161 SIASADINVARRLQRIMST 179 (189)
T ss_dssp EEECSSHHHHHHHHHHHSC
T ss_pred EEEeCCHHHHHHHHHHhCC
Confidence 4455588888888888863
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.43 E-value=2.5e-13 Score=115.89 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=91.2
Q ss_pred CchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-------cccccCCCC
Q 011394 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-------FGIKDDKGD 254 (487)
Q Consensus 182 ~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~-------l~~~~~~~~ 254 (487)
|.|+|+.+|+++|.+.++.+.+++|++.++++.| +|++.+.+++ +.+.++|+.++...+. +.. ++|.+
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPAS-RDYSG 75 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGG-GTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---Hhcccchhhhhhhhhhhhccchhhhc-CCCCC
Confidence 5699999999999999999999999999999999 9999999998 6788889998875432 222 35788
Q ss_pred chhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 255 GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 255 ~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
+|.++.+.||++ ++.+.|++.|+|+|+...+ .+.|..+
T Consensus 76 ~f~~~l~~KDl~------l~~~~a~~~g~~~p~~~~a-~~~~~~a 113 (134)
T d3cuma1 76 GFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 113 (134)
T ss_dssp SSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred CcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 999999999997 9999999999999998765 5565443
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=2.5e-13 Score=115.58 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=91.4
Q ss_pred chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc-ccccccCCCCchhHHhh
Q 011394 183 GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD-IFGIKDDKGDGYLVDKV 261 (487)
Q Consensus 183 ~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~-~l~~~~~~~~~~~l~~i 261 (487)
+|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++...+ .+.. ++|+++|.++.+
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~~-~~~~~~f~~~~~ 75 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVLT-RAFPKTFALGLL 75 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTTT-SCCCCSSBHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHHH-HhhhhhhHHHHH
Confidence 489999999999999999999999999999999 9999999998 678888988887765 3443 568999999999
Q ss_pred hhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 262 LDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 262 ~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.||++ ++.+.|+++|+|+|+...+ .+.+..+
T Consensus 76 ~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a 106 (132)
T d2cvza1 76 VKDLG------IAMGVLDGEKAPSPLLRLA-REVYEMA 106 (132)
T ss_dssp HHHHH------HHHHHHTTTCCCCHHHHHH-HHHHHHH
T ss_pred hhHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99997 9999999999999987765 5555443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.41 E-value=1.2e-12 Score=117.13 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=89.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C-----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D-----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~-----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+||+|||+|.||..+|..|+++||+|.+|||++++++.+.+.+.... . .....+++++|.++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 68999999999999999999999999999999999998876542110 0 022345678888887 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~ 125 (487)
++|+. .++.+++++.+++.++++|+..++.. ..+....+.+...
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~-~~~~~~~~~~~~~ 122 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGAT-GGALEFRKILREN 122 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCS-SHHHHHHHHHHHT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCC-ccHHHHHHHHHHh
Confidence 99986 78999999999999999988766654 3444555555554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.5e-13 Score=119.17 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC---------------CCccccCCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD---------------LPLFGFRDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~---------------~~~~~~~s~ 64 (487)
..||+|||+|.||..+|..++.+||+|++||++++.++...+... ..+. .++..+.+.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~ 83 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 83 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence 358999999999999999999999999999999987654433211 0000 034456677
Q ss_pred HHHHhhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecCCCCChh
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMGVSGGEE 139 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~pvsgg~~ 139 (487)
.+.+.+ +|+|+.|+|....++ +++.++.+..+++.++...|++.+. .+++..+.. + |.||+..|-.-...
T Consensus 84 ~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~HffnP~~~~~lV 158 (192)
T d1f0ya2 84 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRFAGLHFFNPVPVMKLV 158 (192)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred Hhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccCHhHEEeeccccccCcccEE
Confidence 776665 999999999987766 4557888888788777666555532 234433321 1 56776544211100
Q ss_pred hhcCCCccccC--CCHHHHHHHHHHHHHHhccC
Q 011394 140 GARHGPSLMPG--GSFEAYKYIEDILLKVAAQV 170 (487)
Q Consensus 140 ~a~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~ 170 (487)
-++.| .+++.++.+..+++.+|+.+
T Consensus 159 ------EIv~g~~T~~~~i~~~~~~~~~lgk~p 185 (192)
T d1f0ya2 159 ------EVIKTPMTSQKTFESLVDFSKALGKHP 185 (192)
T ss_dssp ------EEECCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred ------EEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 14444 37899999999999999763
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=5.3e-13 Score=119.71 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=98.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC--hHHHHHHHHhhhhcCCC-------CccccCCHHHHHhhcCCCcEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT--TSKVDETVERAKKEGDL-------PLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~--~~~~~~l~~~~~~~g~~-------~~~~~~s~~e~~~~l~~advIi 78 (487)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+..... .+ ++..+++++++++. +|+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHP-RLGVKLNGVEIFWPEQLEKCLEN---AEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBT-TTTBCCCSEEEECGGGHHHHHTT---CSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhh-hhcchhccccccccccHHHHHhc---cchhh
Confidence 79999999999999999999999999999884 44566654432211 00 23456777888776 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH--HHHHHHHHHc------CCeEEecCCCCChhhhcCCC--ccc
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT--ERREKAMAEL------GLLYLGMGVSGGEEGARHGP--SLM 148 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~--~~~~~~l~~~------g~~~i~~pvsgg~~~a~~G~--~i~ 148 (487)
++||.. .++++++++.+++++..+|+.+....+.+. ....+.+.+. ...++..|-+. .+-+..-+ .++
T Consensus 77 ~avps~-~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A-~Ei~~~~pt~~vi 154 (180)
T d1txga2 77 LGVSTD-GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIA-REVAKRMPTTVVF 154 (180)
T ss_dssp ECSCGG-GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCH-HHHHTTCCEEEEE
T ss_pred cccchh-hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccH-HHHHcCCCcEEEE
Confidence 999975 899999999999876555554333322211 1122222221 12334445332 33344444 355
Q ss_pred cCCCHHHHHHHHHHHH
Q 011394 149 PGGSFEAYKYIEDILL 164 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~ 164 (487)
++.+.+..+.++++|+
T Consensus 155 as~~~~~a~~i~~~f~ 170 (180)
T d1txga2 155 SSPSESSANKMKEIFE 170 (180)
T ss_dssp ECSCHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHC
Confidence 6668888888888875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.34 E-value=9.6e-13 Score=118.58 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~ 68 (487)
+..||+|||+|.||.++|..++.+|++|++||++++.+++..+... ..+.. ++..+.+.++ +
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 81 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-F 81 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-G
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-c
Confidence 4568999999999999999999999999999999987665443211 00000 1333444443 3
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcC
Q 011394 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~ 143 (487)
.+ +|+||.++|....++. ++.++.+..+++.||...|++.+. .++++.+... |.||+..|- .
T Consensus 82 ~~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p~r~~g~Hf~nP~~--------~ 148 (186)
T d1wdka3 82 GN---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRPENFVGMHFFNPVH--------M 148 (186)
T ss_dssp GG---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGEEEEECCSSTT--------T
T ss_pred cc---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccCchheEeeccccCcc--------c
Confidence 33 9999999999877764 557888888888888766666543 2344433221 445543331 1
Q ss_pred CC--ccccC--CCHHHHHHHHHHHHHHhccC
Q 011394 144 GP--SLMPG--GSFEAYKYIEDILLKVAAQV 170 (487)
Q Consensus 144 G~--~i~~g--g~~~~~~~v~~ll~~ig~~~ 170 (487)
-+ -++.| .+++.++.+..+++.+|+.+
T Consensus 149 ~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~p 179 (186)
T d1wdka3 149 MPLVEVIRGEKSSDLAVATTVAYAKKMGKNP 179 (186)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 11 14444 37899999999999999763
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.23 E-value=3.8e-11 Score=108.71 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-----------hcCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------KEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.+.+... .....++....+......+ +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 79999999999999998886 69999999999999887763210 0000123444455555555 999
Q ss_pred EEEecCCChh----------HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhh----c
Q 011394 77 IIMLVKAGAP----------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGA----R 142 (487)
Q Consensus 77 Ii~~vp~~~~----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a----~ 142 (487)
|++|+|++.. ++...+.+.. ..++.+|+..||..|.+++++...+... ++.-+|-.-.+..+ .
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchh--hhccchhhcchhhhHhhcc
Confidence 9999998732 2333344433 4578899999999999998877655443 44555644332222 2
Q ss_pred CCCccccCCCHHHHHHHHHHH
Q 011394 143 HGPSLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 143 ~G~~i~~gg~~~~~~~v~~ll 163 (487)
+-+.++.|++.+..+++..++
T Consensus 154 ~p~riv~G~~~~~~~~~~~~~ 174 (196)
T d1dlja2 154 YPSRIIVSCEENDSPKVKADA 174 (196)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCHhhHHHHHHHH
Confidence 223567777655434443333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=6.7e-12 Score=110.28 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=75.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||+|||+|.||+.+|..|+++||+|++++|++++.+..................+..+.... +|+||+++|.. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 799999999999999999999999999999998754432211110000011222333444455 99999999986 79
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCc
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
+++++.+.+.+.++.+|+.+.|+..
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHHhhccccCcccEEeeccCccc
Confidence 9999999999999999999988763
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.89 E-value=2.4e-09 Score=96.25 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+....-.. ... ++....+++++.+. +|+|++++|-....
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 47999999999999999999999999999987553211 111 24567799999998 99999999977677
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|+
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~ 167 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 167 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence 7666 56778899999999999998888888888888765544333333
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.87 E-value=2.1e-09 Score=95.69 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=88.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+|||++.. . ......+++++++. +|+|++++|.....
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12346789999887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..++++.++|++|.+.--+...+.+.+.+..+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6778889999999999998877888888888876544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.83 E-value=5.1e-09 Score=93.90 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=97.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+...|.+|.+||+............ .....+++++.+. +|+|++++|-....
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhccc-------ccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 5899999999999999999999999999998765433322221 3456789999998 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ ++.+..+++|.++|++|-+..-+...+.+.+++..+.....-|+-.+
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~E 169 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 169 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCC
Confidence 7777 57778899999999999998888888888888876655544455443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.81 E-value=6.8e-09 Score=93.44 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.|..-|.+|.+||+....... .. .....+++++.+. +|+|++++|.....
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~--------~~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KK--------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HT--------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cc--------eeeeccccccccc---cccccccCCccccc
Confidence 58999999999999999999999999999987654221 11 1235689999988 99999999987777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|+-.+
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~E 162 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccC
Confidence 7766 56677889999999999988888888888887765554444555444
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=1.6e-08 Score=90.13 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=93.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+......... .+ + ...+++|+.+. ||+|++++|-....
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~-------~-~~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LG-------I-ELLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HT-------C-EECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-cC-------c-eeccHHHHHhh---CCEEEEcCCCCchh
Confidence 5799999999999999999999999999999866543322 11 2 24689999988 99999999988788
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.++ .+.+..++++.++|++|-+.--+...+.+.+.+..+.....-|+-
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~ 162 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFA 162 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCC
Confidence 8777 577888999999999999988888888888877655444334443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.73 E-value=1.1e-08 Score=91.57 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=91.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-++|||||+|.+|..+|+.|..-|.+|.+||+........... ++....+++++.+. +|+|++++|-...
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~ 113 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPE 113 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTT
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhccccccc
Confidence 3589999999999999999999999999999875433332222 24567889999887 9999999998877
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
.+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 114 T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 114 TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred chhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 77777 5778889999999999999888888888888775444
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.71 E-value=1.1e-08 Score=92.33 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=93.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.|..-|.+|.+||+.+..... ......+++++.+. +|+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh-----------cchhHHHHHHHHHh---cccceeeecccccc
Confidence 58999999999999999999999999999997553110 11234589999988 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.++ .+.+..++++.++|+++-+..-+...+.+.+.+..+.....-|.-.+
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~E 163 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 163 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCC
Confidence 7776 56778899999999999998888888888887765554444555443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.67 E-value=3.8e-08 Score=87.25 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=40.9
Q ss_pred CcEEEE-cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (487)
|||+|| |+|.||++||+.|+++||+|.+|+|++++++++.++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 799999 89999999999999999999999999999988877654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.4e-08 Score=90.91 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-++|||||+|.+|..+|+.+...|.+|.+||+....... ......+++|+.+. +|+|++++|-...
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~ell~~---sDii~i~~plt~~ 109 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG-----------NATQVQHLSDLLNM---SDVVSLHVPENPS 109 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-----------TCEECSCHHHHHHH---CSEEEECCCSSTT
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchhh-----------hhhhhhhHHHHHhh---ccceeecccCCcc
Confidence 358999999999999999999999999999987542110 13445789999998 9999999998777
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
...++ ++.+..++++.++|+++-+.--+...+.+.+.+..+...
T Consensus 110 T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a 154 (188)
T d1sc6a1 110 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA 154 (188)
T ss_dssp TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEE
T ss_pred hhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEE
Confidence 77777 677888999999999999988888888888877654433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.64 E-value=6.3e-08 Score=84.02 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+.++|.|||+|.||..++.+|...|. +|++++|+.++++++.+.... .....+++.+.+.+ +|+||.|++.+
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss~ 95 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAP 95 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCCC
Confidence 45689999999999999999999998 699999999999998876432 12334455555555 99999999876
Q ss_pred hhH--HHHHHHHhhcc--cCCCEEEecC
Q 011394 85 APV--DETIKTLSAYM--EKGDCIIDGG 108 (487)
Q Consensus 85 ~~v--~~vl~~l~~~l--~~g~iiId~s 108 (487)
..+ .+.++.....- .+..+|||.+
T Consensus 96 ~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 96 HPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp SCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred CccccHhhhHHHHHhcccCCCeEEEeec
Confidence 432 33444333322 2345899996
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.64 E-value=8.1e-08 Score=84.15 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|.|||+|.||..+|.+|+++||+|+++|||.++++++.+...... ..........+....+...|+++.++|... .
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~-~ 80 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDLVISLIPYTF-H 80 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEE-EEECCTTCHHHHHHHHTTSSEEEECSCGGG-H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccc-cccccccchhhhHhhhhccceeEeeccchh-h
Confidence 58999999999999999999999999999999999999886543110 000112222333333334899999888653 3
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
..+... ....+..++|.+... .....+.+.....+..++..
T Consensus 81 ~~~~~~---~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 121 (182)
T d1e5qa1 81 ATVIKS---AIRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMNE 121 (182)
T ss_dssp HHHHHH---HHHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEECS
T ss_pred hHHHHH---HHhhccceeecccCc-HHHHHHHHHhccccceeehh
Confidence 333322 234567888887654 44556666666666666543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=6.6e-08 Score=81.14 Aligned_cols=116 Identities=12% Similarity=0.194 Sum_probs=75.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~~ 85 (487)
+++.|||+|.+|..+|+.|.+.|++|+++|.++++++++.+.+... +.. .++++-+-+ .++++|.+|++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 3689999999999999999999999999999999999887654321 111 112221111 1345999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
....++..+....+...+++-..+. ...+.+...|+.++-.|
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIHP 118 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEECH
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEECh
Confidence 4444444444555445555444332 23444566677666544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.55 E-value=5.2e-07 Score=75.39 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
|+|-|+|+|.+|..+++.|.+.|++|++.|.++++++++.++.... -+..-.+..++.+ .++++|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 7999999999999999999999999999999999999887653210 0121222233332 245699999888875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
...-.+..+...+.+..+|+-..+.. ..+.+.+.|+.++-.|
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~vi~p 118 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVVVSP 118 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEEECH
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEEECH
Confidence 33333344555566777776555432 2344566677655444
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.38 E-value=6.9e-07 Score=76.89 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.|.-|.+-|+||.++|.+|++--|...+- +...+.+ +. ..+++|+++. +|+|++.+|+. .
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~-~ 84 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE-F 84 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-H
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-H
Confidence 589999999999999999999999999988875443 3333322 33 4689999998 99999999975 4
Q ss_pred HHHHH-HHHhhcccCCCEEEecCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st 109 (487)
-.+++ +.+.|.+++|+.+.-...
T Consensus 85 q~~vy~~~I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 85 QGRLYKEEIEPNLKKGATLAFAHG 108 (182)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHhhhhhcCCCcEEEEecc
Confidence 45566 579999999999876543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=2.7e-06 Score=73.59 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=75.5
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.||.. ....+... ++++. +||+++++.+.+.+.. ++...++.+++.++ +|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccch
Confidence 68999999999986 45556554 55654 7899999998887654 25567888988776 99999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
...+-+... +..|. ++++- -+..+.+..++.+..++.|..+
T Consensus 73 ~h~~~~~~a----l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 73 SHFDVVSTL----LNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp HHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hcccccccc----ccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 554443332 33454 55552 2233466777777666666543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.33 E-value=2e-06 Score=75.87 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||||+|.||...+..|... +++|+ ++|+++++.+.+.++.... ...+.+++++++++. .+.|+|++++|+..
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~ 78 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTSL 78 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccchh
Confidence 5899999999999999999876 56766 6799999988887653211 024567899999875 45899999999876
Q ss_pred hHHHHHHHHhhcccCCCEE-Eec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 86 PVDETIKTLSAYMEKGDCI-IDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~ii-Id~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
..+-.. ..+..|.-| ++- -+..+.+..++.+..++.+..+
T Consensus 79 h~~~~~----~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 79 HVEWAI----KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHHHH----HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hcchhh----hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 554433 234455544 432 1234456666666666666544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.33 E-value=2.4e-06 Score=72.61 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKK---EGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~---~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.|||+|||+|.+|.++|..|+..| .+|.++|+++++++........ ..........+.+++ + +||+|+++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~---~adivvita 80 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-K---DADLVVITA 80 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-T---TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-c---cccEEEEec
Confidence 569999999999999999999988 4899999999876543322110 001123344556554 3 399999987
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. .++++.+++.++ .+..++|..||.
T Consensus 81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 4431 133444556554 467788888874
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.23 E-value=3.9e-06 Score=71.91 Aligned_cols=102 Identities=11% Similarity=0.145 Sum_probs=67.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+.+||+|||+|.+|..+|..|+..++ ++.++|.++++++........ .. ...+....+.++..++ +|+|++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVvi 82 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIV 82 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEEE
Confidence 34699999999999999999988886 899999998876544322110 00 0123344566666666 999999
Q ss_pred ecCCCh--------------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+...+. .++++.+.+.++ .++.+++..||..
T Consensus 83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPv 133 (154)
T d1pzga1 83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPL 133 (154)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcH
Confidence 873210 133444555554 4677888887754
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.23 E-value=4.5e-06 Score=72.39 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+.... ...+++.+++.+. +.|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 68999999999976 45566555 45888999999999988875431 2356778887763 4899999999876
Q ss_pred hHHHHHHHHhhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
..+-+...+ . .| .++++- -+....+.+++.+...++|..+
T Consensus 75 H~~~~~~al-~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLAAFFL-H---LGIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHHHHHH-H---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ccccccccc-c---cccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 555443333 2 33 366652 1233456677777777766543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.22 E-value=1.8e-06 Score=74.27 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC-h
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG-A 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~-~ 85 (487)
-.||.|||.|..|..=++...+.|-+|+++|+++++.+++....... -.....+.+.+.+.++++|+||.++--+ .
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 46899999999999999999999999999999999999887765431 1122334444444455599999987422 1
Q ss_pred hHHHHH-HHHhhcccCCCEEEecCCC
Q 011394 86 PVDETI-KTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~ 110 (487)
....++ ++....+++|.+|||.+..
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred ccCeeecHHHHhhcCCCcEEEEeecC
Confidence 111222 6677889999999998754
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.20 E-value=6e-06 Score=70.22 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccc-cCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFG-FRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~-~~s~~e~~~~l~~advIi~ 79 (487)
...||+|||+|.+|..+|..|+..|. ++.++|+++++++.......... ...... ..+.++ +++||+|++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~----l~daDvvvi 80 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD----CRDADLVVI 80 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG----TTTCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH----hccceeEEE
Confidence 34689999999999999999999886 79999999987654332221100 012222 334433 334999999
Q ss_pred ecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+...+. .++++.+.+..+- |..++|..||..
T Consensus 81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPv 126 (148)
T d1ldna1 81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV 126 (148)
T ss_dssp CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred ecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCcc
Confidence 864431 2344456666664 566888887754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3e-06 Score=72.72 Aligned_cols=89 Identities=8% Similarity=-0.001 Sum_probs=68.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
+++|||.|.+|+.+|+.+...|.+|++||++|-+.-+....+ + .+.+.++++.. +|+++++......+.
T Consensus 26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~-~v~~~~~a~~~---adivvtaTGn~~vI~ 94 (163)
T d1li4a1 26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------Y-EVTTMDEACQE---GNIFVTTTGCIDIIL 94 (163)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCHHHHTTT---CSEEEECSSCSCSBC
T ss_pred EEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------e-Eeeehhhhhhh---ccEEEecCCCccchh
Confidence 699999999999999999999999999999997654433332 2 34578888876 999999987643221
Q ss_pred HHHHHHhhcccCCCEEEecCCCC
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+-.+.+++|.++.+.+...
T Consensus 95 ---~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 95 ---GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp ---HHHHTTCCTTEEEEECSSST
T ss_pred ---HHHHHhccCCeEEEEecccc
Confidence 34567789999999987553
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=1.3e-05 Score=70.46 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHH-HHHHHHHCC--CcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEKG--FPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+||||||+|.+|.. ....+.+.+ ++|. ++|+++++.+.+.+.... ...+++.+|+++. ++.|+|++++|+
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeeccccc-cccceeeccccc
Confidence 48999999999987 466676644 3555 789999999888776431 3467899999875 458999999998
Q ss_pred ChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCe
Q 011394 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~ 128 (487)
....+ ++..++ ..|. ++++- -+....+..++.+..++.+..
T Consensus 78 ~~h~~-~~~~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 78 ELNLP-FIEKAL---RKGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp GGHHH-HHHHHH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred ccccc-cccccc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 75443 333333 3454 45543 123345666666666666654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.09 E-value=1.1e-05 Score=67.98 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=63.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.+|.++|..|+..| .++.++|+++++.+........ .. ..++..+++.++ .+ ++|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~-~~---dadvvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA---NSDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT---TCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH-hc---CCeEEEEE
Confidence 69999999999999999999998 4999999998876543221110 00 002333444443 33 39999998
Q ss_pred cCCC----h-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAG----A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.-.+ . .++++.+.+.++- |+.+++..||.
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNP 120 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNP 120 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSS
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCC
Confidence 6321 1 1334445565554 67788888774
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=1.1e-05 Score=67.91 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=62.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCcccc-CCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGF-RDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g--~~~~~~~-~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|.+|.++|..|+.++. ++.++|+++++++.......... ..+.... .+.++ .+ ++|+|+++..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~~---~adivvitag 76 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD-LK---GSDVVIVAAG 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG-GT---TCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH-hc---CCCEEEEecc
Confidence 699999999999999999998875 89999999987654332211100 0012222 23333 33 4999999863
Q ss_pred CC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+ .. ++++.+.+.++ .|+.+++..||..
T Consensus 77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPv 119 (140)
T d1a5za1 77 VPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPV 119 (140)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcH
Confidence 32 11 22333455554 4677888888753
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.04 E-value=6.7e-06 Score=73.11 Aligned_cols=93 Identities=11% Similarity=0.128 Sum_probs=68.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC------CcEEEEeCCh-HHHHHHHHhhhhcCCCCcc--ccCCHHHHHhhcCCCcEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG------FPISVYNRTT-SKVDETVERAKKEGDLPLF--GFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G------~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~--~~~s~~e~~~~l~~advI 77 (487)
++||+|||.|..|.+-|+||.++| ..|++-=|.. ...+...+.+- ... ...+.+|+++. +|+|
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf-----~v~~~~v~~v~EAv~~---ADiV 115 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGF-----SEENGTLGDMWETISG---SDLV 115 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTC-----CGGGTCEEEHHHHHHT---CSEE
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCC-----ccCCCcccCHHHHHhh---CCEE
Confidence 468999999999999999999955 5577664433 23333333331 111 14478889887 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
++.+|+. .-.++++++.|++++|+++...-
T Consensus 116 miLlPDe-~Q~~vy~~I~p~Lk~G~~L~FaH 145 (226)
T d1qmga2 116 LLLISDS-AQADNYEKVFSHMKPNSILGLSH 145 (226)
T ss_dssp EECSCHH-HHHHHHHHHHHHSCTTCEEEESS
T ss_pred EEecchH-HHHHHHHHHHHhcCCCceeeecc
Confidence 9999986 44567789999999999987654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.04 E-value=1.3e-05 Score=67.49 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+|||+|.+|.++|..|+..|. ++.++|+++++++... +...... ..++....+.+++ + ++|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~-~---~adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-K---GSEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG-T---TCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh-c---cccEEEEe
Confidence 799999999999999999998875 7999999998764422 1111000 0123444555543 3 39999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+. .++++.+.+.++ .+..+++..||.
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCC
Confidence 74321 122333444444 467889888884
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.99 E-value=1.8e-05 Score=66.65 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|.++|..|+.++. ++.++|.++++.+........ .. ..++..+.+.+++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998876 899999998875543322110 00 113445566666533 99999998
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. .++++.+.+.++ .|..+++..||.
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNP 120 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNP 120 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSS
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCc
Confidence 5431 123444555554 356677777664
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.99 E-value=1.3e-05 Score=72.84 Aligned_cols=116 Identities=9% Similarity=0.126 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
-+|||||+|.||.. +...+... +++|. ++|+++++.+.+.++.... ..++..++|.+++++. ++.|+|++++|+.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~-~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc-ccceeeeeccchh
Confidence 38999999999975 55555554 56666 8899999999888764210 0013456788998874 4589999999987
Q ss_pred hhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
...+-++..+ ..|. ++++- -+..+.+..++.+..++.+..+
T Consensus 112 ~H~~~~~~al----~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 112 LHAEFAIRAF----KAGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp GHHHHHHHHH----HTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHhh----hcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 6555444333 3454 44442 2234466667777666666544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.97 E-value=4.7e-05 Score=64.03 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhh----hcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAK----KEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~----~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.||+|||+|.+|..+|..|+..|. ++.++|+++++++....... ..+...+...++.++ +++ +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~d---aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CRD---ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hhC---CcEEEEec
Confidence 489999999999999999999986 89999999987654322111 100012333445544 333 99999987
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-.+. .++++..++.++ .++.++|..||..
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPv 121 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 121 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCch
Confidence 4321 122333455554 4667888787653
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.93 E-value=4.7e-05 Score=64.14 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=63.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCC---ccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLP---LFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~---~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.||+|||+ |.+|+++|..|+..|. ++.++|.++.+.+.+--..... ..+ .....+..+..+. +|+|+++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 38999995 9999999999999886 7999999887654432111100 001 1122334454454 99999986
Q ss_pred CCC---------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+ ..++++.+.+.++ .+..+++..||..
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPv 120 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPV 120 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 432 1244555666666 5677888887754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.91 E-value=2e-05 Score=70.28 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|-|+|++|..+|+.|.+.|..|+++|.+++++......+. . .-+++++... .||+++-|-....-.
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-------~-~~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-------T-AVALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------E-ECCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-------c-ccCccccccc--cceeeeccccccccc
Confidence 47999999999999999999999999999999998877665432 2 3355666553 489888776544322
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.+..+ .+ +-++|+...|.. .+.+...+.+.++|+.|+.-
T Consensus 98 ~~~a~----~i-~ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 98 TEVAR----TL-DCSVVAGAANNV-IADEAASDILHARGILYAPD 136 (201)
T ss_dssp HHHHH----HC-CCSEECCSCTTC-BCSHHHHHHHHHTTCEECCH
T ss_pred HHHHh----hh-hhheeeccCCCC-cchhhHHHHhcccceEEEeh
Confidence 33333 33 347888777753 44445667888999988743
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.87 E-value=5.5e-05 Score=64.80 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh---cCCC-CccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK---EGDL-PLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~---~g~~-~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
..||+|||+|.+|..+|..|+..|. ++.++|+++++++........ ..+. ......+.+++ +++|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~----~~adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT----ANSKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG----TTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc----ccccEEEEe
Confidence 3599999999999999999999997 899999998876443322111 0000 11223344443 339999997
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+. .++++..++.+. .++.++|..||..
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 63321 233334555554 4677888887753
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.86 E-value=3.6e-05 Score=65.02 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=62.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc---CCCCc-cccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE---GDLPL-FGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~---g~~~~-~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++......... -.... ....+.+++ + ++|+|+++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l-~---~adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL-A---DADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG-T---TCSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh-c---cccEEEEec
Confidence 589999999999999999998874 8999999998865433221100 01111 223444443 3 399999986
Q ss_pred CCCh-------------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGA-------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~-------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+. .++++.+.+..+ .++.++|..||..
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPv 125 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPV 125 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcH
Confidence 4321 122333444443 4778888888754
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.84 E-value=2.4e-05 Score=66.58 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=72.7
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+.|+ ++.|+|.|..|+.+|.++...|-+|++++++|-+.-+..-.+ +. ..+.+|++.. +|++|++
T Consensus 20 ~laGk---~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdG-------f~-v~~~~~a~~~---aDi~vTa 85 (163)
T d1v8ba1 20 LISGK---IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITC 85 (163)
T ss_dssp CCTTS---EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEEC
T ss_pred eecCC---EEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcC-------Cc-cCchhHcccc---CcEEEEc
Confidence 45555 699999999999999999999999999999997654433222 33 4688888887 9999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.....+. .+-...++.|.||.+.+.-.
T Consensus 86 TGn~~vI~---~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVDVIK---LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSSSBC---HHHHTTCCTTCEEEECSSTT
T ss_pred CCCCcccc---HHHHHHhhCCeEEEeccccc
Confidence 98754221 34456789999999888654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.82 E-value=6.2e-05 Score=63.22 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCC--Cccc-cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDL--PLFG-FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~--~~~~-~~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|||+|.+|..+|..|+.++. ++.++|+++++++...........+ .... ..+.++ ++++|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD----VKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG----GTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH----hCCCceEEEecc
Confidence 589999999999999999999986 8999999988754333222110000 1111 223333 334999999853
Q ss_pred CCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 83 AGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 83 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+. .++++.+.+.++- |+.++|..||.
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNP 119 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNP 119 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSS
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecCh
Confidence 221 1223334455543 66688888774
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=4.2e-05 Score=65.48 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=62.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CC-CccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DL-PLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~-~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.||+|||+|.+|..+|..|+..|. ++.++|+++++++..+....... .. ......+.+++ + ++|+|+++.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~---~adivvita 95 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-A---NSKLVIITA 95 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-T---TEEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-c---cccEEEEec
Confidence 589999999999999999999986 89999999887654332221100 00 12233455444 3 399999886
Q ss_pred CCCh-----------hHHHHHHHHhhc---ccCCCEEEecCCC
Q 011394 82 KAGA-----------PVDETIKTLSAY---MEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~-----------~v~~vl~~l~~~---l~~g~iiId~st~ 110 (487)
..+. .-..++.++.+. ..++.+++..||.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 4321 011222333332 3467888888874
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.76 E-value=0.00011 Score=62.20 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=63.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.+||+|||+|.+|.++|..|...+. ++.+||+++++++........ .+ ...+....+.+++ + ++|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~---~advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-A---GADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-T---TCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc-C---CCcEEEEe
Confidence 4699999999999999998888775 899999998776544322110 00 0012223344443 3 39999998
Q ss_pred cCCCh--------------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+. .++++.+.+.++ .++.+++..||.-
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPv 128 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPV 128 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 74321 123333455554 4778888888754
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=0.00012 Score=63.38 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCcEEEEcccHHHHHHHH--HHHHC----CCcEEEEeCChHHHHHHHHhh----hhcC-CCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLAL--NIAEK----GFPISVYNRTTSKVDETVERA----KKEG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~--~L~~~----G~~V~v~dr~~~~~~~l~~~~----~~~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
.|||+|||+|..|.+++. .|+.. +.++.++|+++++++...... ...+ ..++..+++.+|..+. +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 479999999999987543 34432 459999999999875432211 1000 1246677888888877 99
Q ss_pred EEEEecCC
Q 011394 76 VIIMLVKA 83 (487)
Q Consensus 76 vIi~~vp~ 83 (487)
+|++++..
T Consensus 79 ~Vv~~~~~ 86 (171)
T d1obba1 79 FVINTAMV 86 (171)
T ss_dssp EEEECCCT
T ss_pred eEeeeccc
Confidence 99998644
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.74 E-value=2.3e-05 Score=68.21 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-----------------------cCCH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-----------------------FRDP 64 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-----------------------~~s~ 64 (487)
.+|-|||.|..|..=++....-|-.|+++|.++++.+++.+.+... +.. ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~----i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF----ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE----CCC-----------------------CCHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce----EEEeccccccccccccchhhcCHHHHHHHH
Confidence 4899999999999999999999999999999999998888765321 110 0112
Q ss_pred HHHHhhcCCCcEEEEecCCCh-hHHHHH-HHHhhcccCCCEEEecCC
Q 011394 65 ESFVNSIQKPRVIIMLVKAGA-PVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~-~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
+.+.+.++++|+||.++--+- ....++ ++....+++|.+|||.+-
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 233344566999999863221 111112 677788999999999874
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.74 E-value=1.1e-05 Score=70.27 Aligned_cols=85 Identities=15% Similarity=0.379 Sum_probs=58.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
+||||||+|.||+..+..|.+. ++++. ++|++++.... .+.....+.+++.++ +|+|++|+|+..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~----------~~~~~~~~~~~~~~~---~D~Vvi~tp~~~ 70 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK----------TPVFDVADVDKHADD---VDVLFLCMGSAT 70 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS----------SCEEEGGGGGGTTTT---CSEEEECSCTTT
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc----------cccccchhhhhhccc---cceEEEeCCCcc
Confidence 5799999999999999999875 45555 67888654211 123344455555554 999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (487)
..+- ..+.+..|.-+|++..
T Consensus 71 h~~~----a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 71 DIPE----QAPKFAQFACTVDTYD 90 (170)
T ss_dssp HHHH----HHHHHTTTSEEECCCC
T ss_pred cHHH----HHHHHHCCCcEEEecC
Confidence 4333 2344667887776543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.66 E-value=4.4e-05 Score=73.17 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+...+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+....++++.+.. +|+|+++++
T Consensus 123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~ 196 (320)
T d1omoa_ 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTP 196 (320)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCC
T ss_pred CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEecc
Confidence 4456899999999999998888753 2 38999999999999888765433 35566677787776 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+...+ ++ ...+++|..|+..++..|..
T Consensus 197 s~~P~---~~--~~~l~~G~hv~~iGs~~p~~ 223 (320)
T d1omoa_ 197 SRKPV---VK--AEWVEEGTHINAIGADGPGK 223 (320)
T ss_dssp CSSCC---BC--GGGCCTTCEEEECSCCSTTC
T ss_pred Ccccc---cc--hhhcCCCCeEeecCCccccc
Confidence 76542 21 24588999999998876643
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.65 E-value=0.00011 Score=61.88 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~ 41 (487)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 69999995 9999999999999984 9999999864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=3.1e-05 Score=67.20 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|-|+|+|-.+++++..|.+.|.+|+++||++++.+.+.+.....+ .+.. .+..+.. ...+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~-~~~~~~~--~~~~dliIN~Tp~G~~- 92 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELE--GHEFDLIINATSSGIS- 92 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGT--TCCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccc-ccccccc--ccccceeecccccCcc-
Confidence 57999999999999999999999999999999999999887644321 1222 2222221 1348999999987632
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+...--...+.++.+++|.--.. ..| .+.+..+++|.
T Consensus 93 ~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~ 130 (170)
T d1nyta1 93 GDIPAIPSSLIHPGIYCYDMFYQK-GKT-PFLAWCEQRGS 130 (170)
T ss_dssp TCCCCCCGGGCCTTCEEEESCCCS-SCC-HHHHHHHHTTC
T ss_pred cCCCCCcHHHhccCcEEEEeecCC-CCC-HHHHHHHHcCC
Confidence 111000123467889999997544 333 34455566665
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.62 E-value=0.0002 Score=65.32 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=72.9
Q ss_pred CCCcEEEEcccHHH----HHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 6 QLTRIGLAGLAVMG----QNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 6 ~~~kIgiIGlG~mG----~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
+.+||||||+|.+| ......+.+. +++|. ++|+++++.+++.++.... .....++.+++.+. ++.|+|+
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~ 90 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIV 90 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEE
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceee
Confidence 34689999999754 4444455543 56766 7899999998887764311 24557899999875 4588999
Q ss_pred EecCCChhHHHHHHHHhhcc--cCC-CEEEecC-CCCchhHHHHHHHHHHc
Q 011394 79 MLVKAGAPVDETIKTLSAYM--EKG-DCIIDGG-NEWYENTERREKAMAEL 125 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l--~~g-~iiId~s-t~~~~~~~~~~~~l~~~ 125 (487)
+++|+....+.+...+.... ..+ .++++-= .....+..++.+..+++
T Consensus 91 i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 91 VSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 141 (237)
T ss_dssp ECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred ccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence 99998766555544443221 122 4666521 12234555555555554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.62 E-value=7.6e-05 Score=63.74 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCC-cEE-EEeCChHHH-HHHHHhhhhcCCCCcc-ccCCHHHHHhh--cCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEKGF-PIS-VYNRTTSKV-DETVERAKKEGDLPLF-GFRDPESFVNS--IQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~G~-~V~-v~dr~~~~~-~~l~~~~~~~g~~~~~-~~~s~~e~~~~--l~~advIi~ 79 (487)
.+||||||+|.+|.. +...|.+..+ ++. +.+|+++.. ..+.+.. ++. ...+.+++.+. +.+.|+||+
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCEEEE
Confidence 368999999999986 4555555433 554 568886532 2333322 122 23345555542 234799999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
++|++.++... .....++.|..|||.|.
T Consensus 78 ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred cCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 99976554432 22334678999999996
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.60 E-value=2.8e-05 Score=74.88 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...+++|||+|.++...+..+.. .+ -+|.+|||++++.+++.++.....+..+..+++++++++. +|+|++|+
T Consensus 125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~T 201 (340)
T d1x7da_ 125 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVT 201 (340)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECC
T ss_pred ccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeecc
Confidence 3445689999999999988887754 33 4899999999999998876543212346779999999998 99999988
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
++.. ...+++ ...+++|..|.-.++-.|..
T Consensus 202 as~s-~~Pv~~--~~~l~pG~hI~aiGs~~p~~ 231 (340)
T d1x7da_ 202 ADKA-YATIIT--PDMLEPGMHLNAVGGDCPGK 231 (340)
T ss_dssp CCSS-EEEEEC--GGGCCTTCEEEECSCCBTTB
T ss_pred ccCC-CCcccc--hhhcCCCCEEeecccchhhh
Confidence 6541 111221 24578999998888766643
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.59 E-value=7.5e-05 Score=60.40 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=77.6
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+||| .+..|..+.++|.+.||+|+..+++.+.+. +.....+++|+-.. .|++++++|+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIE------------GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET------------TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccccc------------Cccccccchhcccc---ceEEEEEeCH
Confidence 4799999 578999999999999999988887644321 36778889888776 8999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+.++++++... ....+++..++.. +++.+.+++.|+.+++
T Consensus 67 ~-~~~~~l~~~~~~-g~k~v~~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 67 K-VGLQVAKEAVEA-GFKKLWFQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp H-HHHHHHHHHHHT-TCCEEEECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHhc-CCceEEeccchhh----HHHHHHHHHcCCEEEc
Confidence 5 677788776653 2345777665543 3456677788998875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=3.1e-05 Score=67.33 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|.|+|+|-++.+++..|.+.+-+|++++|++++++.+.+...... ++....... ..+..+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 47999999999999999999988899999999999999887654321 122222111 123459999999997632
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
..........++++.+++|..=..|..| .+.+..++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~ 131 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL 131 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence 1111111123456788999865445444 23444556665
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.50 E-value=0.00043 Score=53.91 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=66.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~ 263 (487)
..++++|++.|.+.+..+++++|.+.+|++.| +|..++.+.+. ...... .....+..+-.|++.++.+...
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~--~d~ri~-----~~~~~~~pG~G~GG~ClpKD~~- 72 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVIC--QDHKLN-----LSRYYMRPGFAFGGSCLPKDVR- 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHT--TCTTTT-----TSSTTCSCCSCCCSSSHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHh--cCcccc-----ccccccCCcccCCccccchhHH-
Confidence 36889999999999999999999999999998 99999988872 111110 0011223333567777666432
Q ss_pred ccCCCCchHHHHHHHHHcCCCchhHHHHH
Q 011394 264 KTGMKGTGKWTVQQAADLSVAAPTIASSL 292 (487)
Q Consensus 264 ~~~~kgtg~~~~~~a~~~gv~~P~~~~a~ 292 (487)
.....+.+.+++.|++.++.
T Consensus 73 ---------al~~~a~~~~~~~~ll~~~~ 92 (98)
T d1mv8a1 73 ---------ALTYRASQLDVEHPMLGSLM 92 (98)
T ss_dssp ---------HHHHHHHHTTCCCTTGGGHH
T ss_pred ---------HHHHHHHHcCCChHHHHHHH
Confidence 45678899999999988763
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=3.7e-05 Score=66.72 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=71.3
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|+..+..++|||||+|.||...+..|.+.. ..+.+++....+ +.. .. ......+.+|+.+. ++.|+|+
T Consensus 1 ~~~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~---~~----~~~~~~~~~e~l~~-~~iD~V~ 70 (172)
T d1lc0a1 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELG---SL----DEVRQISLEDALRS-QEIDVAY 70 (172)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCC---EE----TTEEBCCHHHHHHC-SSEEEEE
T ss_pred CCCCCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHH---Hh----hccCcCCHHHHHhC-CCcchhh
Confidence 788888889999999999999988877542 234444432221 000 00 11234578888874 4579999
Q ss_pred EecCCChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+++|+....+-+.. .++ .|. ++++- -+....+.+++.+...+.|..+.
T Consensus 71 I~tp~~~H~~~~~~-al~---~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~ 120 (172)
T d1lc0a1 71 ICSESSSHEDYIRQ-FLQ---AGKHVLVEYPMTLSFAAAQELWELAAQKGRVLH 120 (172)
T ss_dssp ECSCGGGHHHHHHH-HHH---TTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred hccccccccccccc-ccc---cchhhhcCCCccccHHHHHHHHHHHHHcCCeEE
Confidence 99998765443333 332 343 55552 12345667777776667665443
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.43 E-value=0.0018 Score=53.13 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=79.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.|+|+-+|.++|.+.++.+++++|++.+..+. ++|.+++.++.+.|. -+|+.++.-...+.+++.. |
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~~-~~S~~~~~~~~~~~~~~~~------~ 68 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFK------P 68 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCC------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccchhhhhccchhhhccCC------C
Confidence 37889999999999999999999999998763 499999999999874 5788887744444333211 2
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
.|.- .-..-.++-+...|-+.|+|+|....+..+|..
T Consensus 69 ~f~~--~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 69 GFRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SSBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CchH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 2221 123455678889999999999999999987764
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00097 Score=55.79 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=59.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-C--CCcEEEEeCChHHHHHHHHhhhhcCCCC---ccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE-K--GFPISVYNRTTSKVDETVERAKKEGDLP---LFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~-~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~---~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|||+||| .|.+|.++|..|+. . +.++.++|..+....+..+......... +...++.++ .++ +|+||++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~~---aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEG---ADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-HTT---CSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-cCC---CCEEEEC
Confidence 7999999 59999999998864 3 4699999987543222222111000001 112333443 344 9999998
Q ss_pred cCCC---------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.-.+ ..++++.+++.++- |+.+||..||..
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCc
Confidence 7322 12445556666654 667888888754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=4.8e-05 Score=67.73 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=51.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
.|+||.|+| .|.+|+.++..|+++||+|.++.|++++.......+. .+.. ..+.+++.+.++++|+||.++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEec
Confidence 477999998 7999999999999999999999999988543321111 1111 2244555455556898888875
Q ss_pred C
Q 011394 83 A 83 (487)
Q Consensus 83 ~ 83 (487)
.
T Consensus 77 ~ 77 (205)
T d1hdoa_ 77 T 77 (205)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.00042 Score=57.22 Aligned_cols=108 Identities=19% Similarity=0.030 Sum_probs=76.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCc---
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLL--- 400 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll--- 400 (487)
.|+|+.+|.++|.+.++.+++++|++.+.++. + +|.+.+.++-+.| --+|+.++........-+. +++
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~----G--ld~~~~~eil~~~-~g~s~~~~~~~~~~~~~~~--~~~~~~ 72 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN----G--LEAKVLAEIMRRS-SGGNWALEVYNPWPGVMEN--APASRD 72 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHTS-TTCCHHHHHCCCSTTSSTT--SGGGGT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C--CCHHHHHHHHHhc-ccchhhhhhhhhhhhccch--hhhcCC
Confidence 48899999999999999999999999998864 3 9999999999977 3578887652111111000 000
Q ss_pred CChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 401 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
.++-|. +.-..-.++-+...|.+.|+|+|....+...|..
T Consensus 73 ~~~~f~--~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~ 112 (134)
T d3cuma1 73 YSGGFM--AQLMAKDLGLAQEAAQASASSTPMGSLALSLYRL 112 (134)
T ss_dssp TCSSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCCcc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 001111 1122345678888999999999999999876653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.33 E-value=0.0015 Score=55.76 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=60.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc---ccCCHHHHHhhc-----CCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF---GFRDPESFVNSI-----QKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~---~~~s~~e~~~~l-----~~advIi~ 79 (487)
.+|.|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.+... .+. ...+..+..+.+ ..+|+||-
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~---~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid 104 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV---TLVVDPAKEEESSIIERIRSAIGDLPNVTID 104 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE---EEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE---EEeccccccccchhhhhhhcccccCCceeee
Confidence 4799999999999999999999999999999999988777655321 000 011222222211 23677777
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
++..+.. ++.....++++-.++..+.
T Consensus 105 ~~g~~~~----~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 105 CSGNEKC----ITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CSCCHHH----HHHHHHHSCTTCEEEECSC
T ss_pred cCCChHH----HHHHHHHHhcCCceEEEec
Confidence 7765432 2333344555555555543
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.31 E-value=0.0011 Score=51.48 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=62.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhc
Q 011394 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDK 264 (487)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 264 (487)
.++++|++.|.+.+..++.++|.+.+|++.| +|..++.+.+. ...... ...+..+..|++.++.+..
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~~--~d~~~~-------~~~~~pg~g~GG~ClpKD~--- 69 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGIS--YDDRIG-------MHYNNPSFGYGGYSLPKDT--- 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH--TSTTTC-------SSSCCCCSSCCSSHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHH--hccccC-------CccccCCCCcccccCcccH---
Confidence 5789999999999999999999999999998 99999887763 111111 1233444457777776654
Q ss_pred cCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 265 TGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 265 ~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
+++ .+.+.|++.|++.++
T Consensus 70 --------~al-~~~~~~~~~~ll~~~ 87 (98)
T d1dlja1 70 --------KQL-LANYNNIPQTLIEAI 87 (98)
T ss_dssp --------HHH-HHHHTTSSCSHHHHH
T ss_pred --------HHH-HHHhcCCCcHHHHHH
Confidence 233 456779999988875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.30 E-value=0.00018 Score=62.02 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|.|||+|-+|++++..|.+.|. +|++++|++++.+.+.+... .....+.. ...+|+||-|+|-+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm 85 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGM 85 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCC
Confidence 4589999999999999999999997 89999999999998876542 12222221 123899999998541
Q ss_pred h--HHHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 86 P--VDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 86 ~--v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+.. +.--...++++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 86 KGGKEEMDLAFPKAFIDNASVAFDVVAMP-VET-PFIRYAQARGKQTIS 132 (167)
T ss_dssp TTSTTTTSCSSCHHHHHHCSEEEECCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred ccccccccccccHhhcCCcceEEEEeecc-CCC-HHHHHHHHCCCeEEE
Confidence 0 0000 000001244678999986543 344 245556777876654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.27 E-value=0.00061 Score=58.23 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=49.8
Q ss_pred CcEEEEcccHHHHHHHHH-HHH-C----CCcEEEEeCChHHHHHHHHhhhh--cCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALN-IAE-K----GFPISVYNRTTSKVDETVERAKK--EGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~-L~~-~----G~~V~v~dr~~~~~~~l~~~~~~--~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|||+|||.|..|.+++.. |++ . +.++.++|.++++.+...+.... ....++...++..+..++ +|+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 699999999999887744 222 1 35899999999987654332110 001134556677777666 999999
Q ss_pred ecCCC
Q 011394 80 LVKAG 84 (487)
Q Consensus 80 ~vp~~ 84 (487)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87644
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.25 E-value=0.00046 Score=62.33 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|.|-|.|++|..+|+.|.+.|..|++.|.++..++.+..... .. ..+++++... +||+++-|--...-.
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVLN 110 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCBS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEecccccccccC
Confidence 57999999999999999999999999999999999888776542 22 3355555542 499999987655332
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
++.+.. + +=++|+...|..|.+. +..+.|.++|+.|+.-
T Consensus 111 ~~~~~~----l-~ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iPD 149 (230)
T d1leha1 111 DFTIPQ----L-KAKVIAGSADNQLKDP-RHGKYLHELGIVYAPD 149 (230)
T ss_dssp TTHHHH----C-CCSEECCSCSCCBSSH-HHHHHHHHHTCEECCH
T ss_pred hHHhhc----c-CccEEEecccCCCCCc-hHHHHHHhhCcEEEee
Confidence 333333 3 2468888887766543 4567788999988754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.0016 Score=54.61 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=69.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC-ccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP-LFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
.|-|+|.|.+|..++..|.+.|++|++.|.++++..+..+..... +.. +.+-.+..++.+ .++++|.+|++.+++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 588999999999999999999999999999988655444432211 001 111122233332 3567999999998764
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
....++. ....+.+. .+++-+.+. .. .+.+...|+.++-.|
T Consensus 84 ~n~~~~~-~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi~p 125 (153)
T d1id1a_ 84 DNAFVVL-SAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIILSP 125 (153)
T ss_dssp HHHHHHH-HHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEECH
T ss_pred HHHHHHH-HHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEECH
Confidence 3222222 22233344 566655442 22 233455677665444
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.21 E-value=0.00039 Score=57.84 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=77.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+|||+ +..|..++.+|.++||+|+..|+....+ . +..+..+++|+-.. .|++++++|+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i---------~---G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV---------L---GRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc---------C---CCcccccccccCcc---ceEEEEEeCH
Confidence 47999995 5799999999999999998888764321 1 36678889887765 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+.++++++... ....+++..++.. ++..+.+.+.|+.+++
T Consensus 85 ~-~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 85 K-LTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp H-HHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 4 788888877664 3445666555543 3455667788998885
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.20 E-value=0.00068 Score=58.17 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCCcEEEEcccHHHHHHH-HHHHH-C-C---CcEEEEeCChHHHHHHHH---hhh-hcC-CCCccccCCHHHHHhhcCCC
Q 011394 6 QLTRIGLAGLAVMGQNLA-LNIAE-K-G---FPISVYNRTTSKVDETVE---RAK-KEG-DLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA-~~L~~-~-G---~~V~v~dr~~~~~~~l~~---~~~-~~g-~~~~~~~~s~~e~~~~l~~a 74 (487)
+..||+|||.|..|.+.+ ..+.. . . -+|.++|.++++++.... ... ..+ ..++..+++..|.++. +
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---A 78 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---V 78 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---C
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---C
Confidence 345899999999987643 23332 2 2 389999999998763322 111 000 1135567788888776 9
Q ss_pred cEEEEecCC
Q 011394 75 RVIIMLVKA 83 (487)
Q Consensus 75 dvIi~~vp~ 83 (487)
|+||++.-.
T Consensus 79 D~Vvitag~ 87 (167)
T d1u8xx1 79 DFVMAHIRV 87 (167)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999754
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00011 Score=56.85 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
+||.|+|+|..|.+.|+.|.+.|++|++||.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 4799999999999999999999999999997543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.0019 Score=52.69 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=62.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||+|+|+ |+||+.++..+.+.|+++.+ +|++.. ..++.+|+||=...+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p~- 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSPE- 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCGG-
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCHH-
Confidence 68999995 99999999999999998764 353311 1122389988766543
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv 134 (487)
.+.+.++... ..+.-+|..||+...+..+..+.+. +.+..+-+|.
T Consensus 53 ~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~~i~~~a-k~~pv~~a~N 97 (128)
T d1vm6a3 53 ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELS-KEVPVVQAYS 97 (128)
T ss_dssp GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHT-TTSEEEECSC
T ss_pred HHHHHHHHHH---hcCCCEEEEcCCCCHHHHHHHHHHH-hhCCEEeeec
Confidence 5666665443 3567788888887665544444442 3455555554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00096 Score=57.20 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc-----CCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI-----QKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l-----~~advIi~~v 81 (487)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+...- ......++.+..+.+ ..+|++|-|+
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~--~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV--LQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE--EECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccc--ccccccccccccccccccCCCCceEEEecc
Confidence 479999999999999999999998 79999999999987766554210 001123444443321 2489999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..+.. ++.....++++-.++-.+........... .+-.+++.+++
T Consensus 106 G~~~~----~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~G 150 (171)
T d1pl8a2 106 GAEAS----IQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKG 150 (171)
T ss_dssp CCHHH----HHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEE
T ss_pred CCchh----HHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEE
Confidence 86543 44445556677766666654332222222 23345666664
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.11 E-value=0.0016 Score=54.13 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC--cEEEEeCCh--HHHH----HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTT--SKVD----ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advI 77 (487)
.||+||| .|.+|..+|..|...+. ++.++|++. ++.+ ++....... .+.+ ...+.+++ + ++|+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~--~~~~i~~~~~~~~-~---~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYD--SNTRVRQGGYEDT-A---GSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTT--CCCEEEECCGGGG-T---TCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccccc--CCceEeeCCHHHh-h---hcCEE
Confidence 4899999 69999999999999986 799999753 3332 222111110 0122 23345544 3 49999
Q ss_pred EEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.-.+ .. ++++.+.+..+- ++.+++..||.
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNP 121 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNP 121 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSS
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecCh
Confidence 9985322 11 223334455443 56778777764
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=0.0045 Score=50.57 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH-HHhhCCCCCCCcCCh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK-AYDRNADLANLLVDP 403 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~-~~~~~~~~~~ll~~~ 403 (487)
|+|+-+|.+.|.+..+.+++++|++.+-++. ++|+.+++++.+.| --+|+.++.... ....+.. + +
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s-~~~s~~~~~~~p~~~~~~~~-~-----~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINAS-SGRSNATENLIPQRVLTRAF-P-----K 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCBHHHHHTHHHHTTTSCC-C-----C
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHhh-h-----h
Confidence 6788999999999999999999999998864 49999999999876 346777765332 2222221 1 2
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 441 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~ 441 (487)
.|.- +-....++-+...|.+.|+|+|...++...|.
T Consensus 69 ~f~~--~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~ 104 (132)
T d2cvza1 69 TFAL--GLLVKDLGIAMGVLDGEKAPSPLLRLAREVYE 104 (132)
T ss_dssp SSBH--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred hhHH--HHHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 2221 22344668888999999999999998887664
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00032 Score=61.18 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHH---hhhhcCCCC--ccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVE---RAKKEGDLP--LFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~~~~~g~~~--~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|.|||+|-+|++++..|.+.|. .++++||++++.+++.. +........ +.-..+.+++...+..+|+||-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 589999999999999999999987 78999999877665432 211100000 111223344444344499999999
Q ss_pred CCChhH--HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 82 KAGAPV--DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 82 p~~~~v--~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
|.+..- .+.+..-...++++.+++|..- .|..| .+.+..++.|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y-~p~~T-~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVY-NPHMT-KLLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCC-SSSSC-HHHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhc-Ccccc-HHHHHHHHCcCeEec
Confidence 865210 0000001234678899999964 33444 344555677777664
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.0014 Score=56.71 Aligned_cols=93 Identities=26% Similarity=0.378 Sum_probs=58.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEE-eCC-hH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVY-NRT-TS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~-dr~-~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+||||+| .|..|.-+.+.|.++-+ ++... .++ .. ++..+....... ......+.+++.++ +|++|+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~~~~---~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKVSKN---CDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHHHHH---CSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc---ccccccCHhHhccc---cceEEEcc
Confidence 67999998 89999999999998754 55544 222 21 222221111100 11223466677666 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+... + +.+.. .+..|||.|+-.
T Consensus 75 p~~~s~-~----~~~~~-~~~~VIDlSadf 98 (176)
T d1vkna1 75 PAGASY-D----LVREL-KGVKIIDLGADF 98 (176)
T ss_dssp STTHHH-H----HHTTC-CSCEEEESSSTT
T ss_pred ccHHHH-H----HHHhh-ccceEEecCccc
Confidence 987432 2 23333 688999999876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0052 Score=52.21 Aligned_cols=93 Identities=13% Similarity=0.244 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|.|+|+|.+|...++.+...|.++++.++++++.+.+.+.+... +.-..+........+..|++|.++..+..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4799999999999999888889999999999999887766655421 222333444444445689999999876544
Q ss_pred HHHHHHHhhcccCCCEEEecC
Q 011394 88 DETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~s 108 (487)
... ...+.++-.++..+
T Consensus 108 ~~~----~~~l~~~G~iv~~G 124 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVG 124 (168)
T ss_dssp HHH----HTTEEEEEEEEECC
T ss_pred HHH----HHHHhcCCEEEEec
Confidence 443 45556665555554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.0014 Score=55.38 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=61.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEE--eCChHHHHHHHHhhhhcCCC---CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVY--NRTTSKVDETVERAKKEGDL---PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~~~~~g~~---~~~~~~s~~e~~~~l~~ 73 (487)
-|||+|||+ |.+|.++|..|+..+. ...++ +++.++.+............ .+...++..+..++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD--- 80 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc---
Confidence 359999996 9999999999998753 12333 44555555443322111000 23445566666565
Q ss_pred CcEEEEecCCC----h-----------hHHHHHHHHhhcccCCCEEEecCCCCchhH
Q 011394 74 PRVIIMLVKAG----A-----------PVDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (487)
Q Consensus 74 advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (487)
+|+|+++--.+ . .++++...+..+.+++.+|+-.|| |-++
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv 135 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANT 135 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHH
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHH
Confidence 99999986321 1 123333556565666777777776 4454
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.00036 Score=57.34 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=71.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+|+|||+ |.+|..+.++|.+.| ++|+..|+..+.+. +...+.|++|+-.. .|++++++|
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~------------G~~~y~sl~dlp~~---vDlvvi~vp 73 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ------------GVKAYKSVKDIPDE---IDLAIIVVP 73 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET------------TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC------------CeEeecchhhcCCC---CceEEEecC
Confidence 47999996 899999999998776 68988888754321 36778888888665 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCC-CCc-hhH----HHHHHHHHHcCCeEEe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGN-EWY-ENT----ERREKAMAELGLLYLG 131 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st-~~~-~~~----~~~~~~l~~~g~~~i~ 131 (487)
+. .+.++++++...--+ .+|+-.+. ... ..- +++.+...+.|+++++
T Consensus 74 ~~-~~~~~~~~~~~~g~~-~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 74 KR-FVKDTLIQCGEKGVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp HH-HHHHHHHHHHHHTCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred hH-HhHHHHHHHHHcCCC-EEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 75 677888877764333 33433321 111 111 1233444556887774
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.00 E-value=0.00017 Score=62.70 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|-|||.|-++++++..|.+.| +|++++|++++.+.+.+..............+..++...+..+|+||.|+|.+..-
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~ 97 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 97 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence 47999999999999999998777 99999999999988876442110000000011112222233489999999875311
Q ss_pred HHHHHHH--hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETIKTL--SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl~~l--~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
....... ...+.++.+++|..-....+ .+.+..++.|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 98 NIDVEPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN 141 (177)
T ss_dssp CCSSCCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred cccccchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence 1000000 12345788999987544333 244455666766654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00059 Score=57.23 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-C---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+|||||| +|.+|+-+.+.|.++. | +++.+..+........ ..... .......+..++ +. +|++|+|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~--~~~~~~~~~~~~-~~---~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTT--GTLQDAFDLEAL-KA---LDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCC--CBCEETTCHHHH-HT---CSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCc--eeeecccchhhh-hc---CcEEEEec
Confidence 56899998 5999999998877653 3 5665655433211111 00000 001112233333 43 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++ ........+... ..+.+|||.|+.+
T Consensus 74 ~~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 74 GGD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp CHH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred Cch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 875 334444444331 2346899999864
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.94 E-value=0.0028 Score=54.33 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=61.2
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC----CCcEEEEeCChHH--HHHHHH---hhh-hcC-CCCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGLAVMGQN--LALNIAEK----GFPISVYNRTTSK--VDETVE---RAK-KEG-DLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGlG~mG~~--lA~~L~~~----G~~V~v~dr~~~~--~~~l~~---~~~-~~g-~~~~~~~~s~~e~~~~l~~a 74 (487)
|||+|||+|..|.+ ++..+... +-++.++|+++++ .+.+-. ... ..+ ..++..+++..+..+. +
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g---a 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG---A 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---C
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---C
Confidence 69999999987753 44444432 1389999998854 332221 100 000 1134566777777666 9
Q ss_pred cEEEEecCCChh-----------------------------------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 75 RVIIMLVKAGAP-----------------------------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 75 dvIi~~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|+|+++...+.. ++++.+.+..+ .|+.+++..||..
T Consensus 79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPv 149 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPA 149 (169)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChH
Confidence 999999865421 23444555554 5888999888864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.89 E-value=0.002 Score=52.47 Aligned_cols=94 Identities=10% Similarity=0.147 Sum_probs=61.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~ 86 (487)
.|-|+|.|.+|..+++.| +|++|.+.+.++++.+.+...+... +.+-.+-.+..+ .+++++.++++.+++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANF----VHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEE----EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccc----cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 477999999999999998 4678999999999988877654321 222223334443 35679999999887643
Q ss_pred HHHHHHHHhhcccCC-CEEEecCC
Q 011394 87 VDETIKTLSAYMEKG-DCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g-~iiId~st 109 (487)
...++..+ ..+.|. .+++-+.+
T Consensus 76 n~~~~~~~-r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 76 TIHCILGI-RKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHHHH-HHHCSSSCEEEECSS
T ss_pred hHHHHHHH-HHHCCCceEEEEEcC
Confidence 32222333 334444 56665544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.89 E-value=0.0018 Score=53.42 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=68.5
Q ss_pred CCCcEEEEcc----------cHHHHHHHHHHHHCCCcEEEEeCChHHH-------HHHHHhhhhcCCCCccccCCHHHHH
Q 011394 6 QLTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKV-------DETVERAKKEGDLPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~-------~~l~~~~~~~g~~~~~~~~s~~e~~ 68 (487)
...||+|+|+ +.-...++..|.+.|++|.+||+.-+.. +.+....... +...++++.+++
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~i 88 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEVV 88 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHHH
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhhh
Confidence 3468999998 4678889999999999999999743221 1111111000 134578999999
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
+. +|+||++++.+. ..+ +...+.++.+|+|+-+..+.
T Consensus 89 ~~---~D~ivi~t~h~~-f~~----l~~~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 89 AS---SDVLVLGNGDEL-FVD----LVNKTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp HH---CSEEEECSCCGG-GHH----HHHSCCTTCEEEESSSCCSS
T ss_pred hh---ceEEEEEeCCHH-HHH----HHHHhcCCCEEEECCCCCCh
Confidence 98 999999999874 333 34456678999999887653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.86 E-value=0.00045 Score=62.45 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+||.|||.|.+|.+.|..|+++|++|+++||+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3589999999999999999999999999999863
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.86 E-value=0.0028 Score=53.39 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=60.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcCCC---CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEGDL---PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~g~~---~~~~~~s~~e~~~~l~~ 73 (487)
-+||+|||+ |.+|.++|..|+..+. ++..+|.+.. +.+.+.......... .+....+..+..++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---
Confidence 469999995 9999999999987542 5777887653 344443221110000 24455667777666
Q ss_pred CcEEEEecCCCh---------------hHHHHHHHHhhcccCCCEEEecCC
Q 011394 74 PRVIIMLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 74 advIi~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+|+||++-..+. .++++...+..+.++.-++|..||
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 999999864321 233444556565544445666665
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.85 E-value=0.0014 Score=50.70 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=36.6
Q ss_pred CCCcEEEEcccHHH-HHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhh
Q 011394 6 QLTRIGLAGLAVMG-QNLALNIAEKGFPISVYNRTT-SKVDETVERA 50 (487)
Q Consensus 6 ~~~kIgiIGlG~mG-~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~ 50 (487)
..++|=|||.|-.| +++|+.|.+.||+|+++|+.. ..++.+.+.+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~G 53 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAG 53 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCC
Confidence 35689999999999 778999999999999999873 4455665544
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.0013 Score=50.15 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=36.1
Q ss_pred CcEEEEcccHHHH-HHHHHHHHCCCcEEEEeCCh-HHHHHHHHhh
Q 011394 8 TRIGLAGLAVMGQ-NLALNIAEKGFPISVYNRTT-SKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIGlG~mG~-~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~ 50 (487)
|||=|||.|-+|. ++|+.|.++|+.|+++|+.+ +.+++|.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~G 46 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLG 46 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCC
Confidence 7899999999995 79999999999999999886 4455665544
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.81 E-value=0.00078 Score=55.77 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=78.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+|||+ +..|..+.++|.+.||++..++.++... + . .+.....++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~-~----i-----~g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE-E----L-----FGEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS-E----E-----TTEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc-e----e-----eceecccchhhccCC---CceEEEeccH
Confidence 46999996 7899999999999999999999875311 0 1 035677888887665 8999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+.++++++... ....+++..+... ++..+.+++.|+.++.
T Consensus 81 ~-~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 81 S-ALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp H-HHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred H-HHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 4 677777776653 3556777666543 3456777788998884
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.79 E-value=0.0042 Score=53.56 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEE-eCChHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVY-NRTTSKV 43 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~-dr~~~~~ 43 (487)
|-||||.|+|++|+.+++.+.++. ++|... |+++...
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 458999999999999999999764 577655 6665543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.72 E-value=0.0054 Score=55.99 Aligned_cols=84 Identities=12% Similarity=0.247 Sum_probs=59.2
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011394 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (487)
Q Consensus 8 ~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 83 (487)
+||++| |.+-+|..+|+.|++.|++|.+.+|++++++++.++.... . .+++.+ =+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~----------------g---~~~~~~~~Dv~~ 61 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----------------G---GHAVAVKVDVSD 61 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCC
Confidence 478887 4667999999999999999999999999888776543211 0 223222 2445
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+++.+++.+.....+=+++|+....
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 62 RDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCccEEEecccc
Confidence 566777777777666566788876543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.63 E-value=0.00046 Score=57.82 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.|+||||| .|..|+-+.+.|.+++| ++.....+...-+.+..... .........+.... +|++|+++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~-----~~~~~~~~~~~~~~---~d~vf~a~p 73 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES-----SLRVGDVDSFDFSS---VGLAFFAAA 73 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTE-----EEECEEGGGCCGGG---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccc-----cchhccchhhhhcc---ceEEEecCC
Confidence 37999998 59999999999987665 56655333221111100000 11111111222333 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+ ........+ ...|.+|||.|+-.
T Consensus 74 ~~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 74 AE-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp HH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cc-hhhhhcccc---ccCCceEEeechhh
Confidence 75 333333333 45789999999865
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.60 E-value=0.0069 Score=55.27 Aligned_cols=82 Identities=11% Similarity=0.218 Sum_probs=58.7
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
||++| |.+-+|.++|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----------------G---VEADGRTCDVRSV 63 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeecCCH
Confidence 68888 5778999999999999999999999999888776543211 0 2222222 3455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++.+.....+=+++|+...
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccc
Confidence 6777777777776655578887643
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.59 E-value=0.00095 Score=55.91 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCC-C---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
||||||| .|..|+-+.+.|.++. | ++..+..+... .......... .......+.+ ..+. +|++|+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~--~~~~~~~~~~-~~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDA--GMLHDAFDIE-SLKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCC--CBCEETTCHH-HHTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcc--eeeecccchh-hhcc---ccEEEEecC
Confidence 6899998 8999999998887643 3 44444332211 0000000000 0011112222 2343 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ ....+...+... ..+.+|||.|...
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 86 445555555432 2345899999865
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.51 E-value=0.0069 Score=51.86 Aligned_cols=37 Identities=11% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEE-EEeCChHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKV 43 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~ 43 (487)
++||||.|.|++|+.+.+.+.+.. .+|. +.|.++...
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 469999999999999999998764 4555 557766543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0028 Score=53.84 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=57.2
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+. +|.+++..|.+.|.+|++++... .++.+..++ +|+||.++..+..
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------chhHHHHhh---hhHhhhhccCccc
Confidence 4799999776 99999999999999999997543 234455565 9999999976643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 94 i~------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred cc------ccccCCCcEEEecCce
Confidence 32 2467899999999865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.47 E-value=0.0061 Score=52.25 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=62.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhc---CCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSI---QKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l---~~advIi~~vp 82 (487)
.+|.|+|+|.+|...++.+...|. +|++.|++++|.+.+.+.+... -+.. ..+..+.+.++ ...|+||.++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~---~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD---ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE---EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc---cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 479999999999999988888896 7999999999988777665321 0111 12333333332 23788888887
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+..++.. ...++++-.++..+.
T Consensus 106 ~~~~~~~a----~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 106 GSETLSQA----VKMVKPGGIISNINY 128 (174)
T ss_dssp CTTHHHHH----HHHEEEEEEEEECCC
T ss_pred CHHHHHHH----HHHHhcCCEEEEEee
Confidence 65444433 344455666665553
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.46 E-value=0.0023 Score=55.28 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCcEE-EEeCC--h---HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRT--T---SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~--~---~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|+||+||| .|..|+-|.+.|..+ .+++. ++.++ . .+....................+...... ++|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSA---DVDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCT---TCCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhc---ccceee
Confidence 67999999 999999999999997 45665 33222 1 12222111110000001112223333333 489999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
+|+|+.. .......+ ...+..|||.|.-.-
T Consensus 78 ~alp~~~-s~~~~~~~---~~~~~~vIDlSadfR 107 (179)
T d2g17a1 78 LATAHEV-SHDLAPQF---LQAGCVVFDLSGAFR 107 (179)
T ss_dssp ECSCHHH-HHHHHHHH---HHTTCEEEECSSTTS
T ss_pred ccccchh-HHHHhhhh---hhcCceeeccccccc
Confidence 9999763 33333333 457899999998653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.42 E-value=0.0082 Score=51.32 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEE-EeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISV-YNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v-~dr~~~ 41 (487)
|.+|||-|.|++|+.+.+.+.+.+ .+|.. .|+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 569999999999999999988776 46654 466654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.41 E-value=0.0084 Score=54.53 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=58.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
||++| | .+-+|..+|+.|++.|++|.+++|++++++++.++....+ .++..+ =+.+.
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------------~~~~~~~~Dvt~~ 71 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------------YESSGYAGDVSKK 71 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------------CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCCCH
Confidence 68877 4 6789999999999999999999999998887766432110 222222 23455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++++.....+=+++|+...
T Consensus 72 ~~v~~~~~~~~~~~g~iDilvnnag 96 (251)
T d2c07a1 72 EEISEVINKILTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhcCCceeeeeccc
Confidence 6777778777776656678877543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0072 Score=54.73 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=57.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++... . +..+..=+.+..+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA-----------------N---GKGLMLNVTDPAS 64 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC-----------------C---CcEEEEEecCHHH
Confidence 46677 4 77899999999999999999999999988877654321 1 1222222445567
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|+...
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAG 87 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred hhhhhhhhhcccCCcceehhhhh
Confidence 77788777776656678887653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0078 Score=54.58 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=60.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|..+|+.|+++|++|.++||++++++++.++.... -.. +-.+.+=+.+...
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--------------~~~---~~~~~~Dvs~~~~ 70 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--------------GAK---VHTFVVDCSNRED 70 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------TCC---EEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEeeCCCHHH
Confidence 46666 5 566999999999999999999999999988877643211 000 2222333455566
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+++.+.....+=+++|+.....
T Consensus 71 v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 71 IYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCceeEeecccc
Confidence 7777787777666778888876554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0042 Score=53.02 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=58.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+. +|.++|..|.+.|..|++++.... ++.+..++ +|++|.++..+.-
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 4699999755 999999999999999999986532 33444555 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ ...+++|.+|||.+...
T Consensus 96 i~------~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred cc------cccccCCCeEeccCccc
Confidence 32 25688999999998764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.31 E-value=0.0071 Score=52.58 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
++|-|.| .|-+|..+|+.|++.|.+|++.+|++++.+++.+..
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~ 67 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 67 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence 3577777 899999999999999999999999999988776643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0016 Score=55.64 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=59.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh-cCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS-IQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~-l~~advIi~~vp~~~~ 86 (487)
.+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+.+.+... +....+..+..+. ....|+++.++.....
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 104 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTD 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCCcc
Confidence 4799999999999988887788999999999999998877766421 1111111222222 2346888887765421
Q ss_pred HHHHHHHHhhcccCCCEEEecC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~s 108 (487)
. .++.....+.++-.++..+
T Consensus 105 ~--~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 I--DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp C--CTTTGGGGEEEEEEEEECC
T ss_pred c--hHHHHHHHhhccceEEEec
Confidence 1 1223344455555555554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.25 E-value=0.021 Score=48.85 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcCCC---CccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEGDL---PLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~g~~---~~~~~~s~~e~~~~l~~a 74 (487)
.||.|+|+ |.+|.+++..|++... .+.++|.+.. +++.+.-........ .+..+++..+..++ +
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---a 101 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 101 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---C
Confidence 37999996 9999999999997532 5667777653 334333221110000 23456677776665 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCCchhHH
Q 011394 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEWYENTE 116 (487)
Q Consensus 75 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~ 116 (487)
|+||++...+ .. ++++.+.+..+.+++.+|+-.|| |-++.
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~ 156 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTN 156 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHH
Confidence 9999986322 11 33333556666666777777776 44543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0078 Score=54.76 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=56.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++... +..+..=+.+..+
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~~ 65 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQEDD 65 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHHH
Confidence 45555 4 78999999999999999999999999988877654321 1122222445567
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++++.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEeccc
Confidence 77777777766555678887654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.022 Score=48.70 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=37.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 50 (487)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 479999999999999998888997 7999999999988766544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.20 E-value=0.012 Score=53.19 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=59.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.||++++++++.++... . +..+-.=+.+..+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 66 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQPAQ 66 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCHHH
Confidence 56776 4 67799999999999999999999999988877654321 1 1122112445567
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+++++.....+=+++|+.....
T Consensus 67 v~~~~~~~~~~~g~idilinnAG~~ 91 (244)
T d1nffa_ 67 WKAAVDTAVTAFGGLHVLVNNAGIL 91 (244)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCeEEEECCccc
Confidence 7788877777666667888876543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.016 Score=52.78 Aligned_cols=83 Identities=11% Similarity=0.199 Sum_probs=58.6
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+++| |.+-+|.++|+.|++.|++|.+.+|++++++++.++.... . .+++.+. +.+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----------------G---GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEccCCCH
Confidence 67777 6788999999999999999999999999888776543211 0 2233222 3445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+.....+=+++|+....
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 56777777776666566778776543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.15 E-value=0.013 Score=54.39 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=56.8
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|++|| |.|-+|.++|+.|++.|++|++.+|+.++.+++.++... + .. .++..+ =+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~-------------~-~g----~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-------------Q-TG----NKVHAIQCDVRDP 87 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------------H-HS----SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-------------h-cC----CceEEEEecccCh
Confidence 78888 799999999999999999999999999988776653211 0 00 222222 23444
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++..++.+......=+++|+....
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhhh
Confidence 45666666666555555777776544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.14 E-value=0.017 Score=52.73 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=57.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.||++++++++.+..... . .++..+. +.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 45555 5 677999999999999999999999999888776543211 0 2333222 4555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++.+.....+=+++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 6778888777766656678887644
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.04 E-value=0.013 Score=52.91 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.+... +..+..=+.+..+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~----------------------~~~~~~Dv~~~~~ 63 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG----------------------AHPVVMDVADPAS 63 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT----------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CeEEEEecCCHHH
Confidence 45565 5 6779999999999999999999999998877665321 1122222345566
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 64 v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 64 VERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCceEEEECCcc
Confidence 777777776665555788876543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=96.03 E-value=0.013 Score=53.52 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=56.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+++| | .+-+|..+|+.|++.|++|.+.||++++++++.++.... . .++..+. +.+.
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----------------G---FKVEASVCDLSSR 69 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CCceEEEeeCCCH
Confidence 46666 5 667999999999999999999999999988776543211 0 2222222 3445
Q ss_pred hhHHHHHHHHhhccc-CCCEEEecCCC
Q 011394 85 APVDETIKTLSAYME-KGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~-~g~iiId~st~ 110 (487)
.+++.+++++..... +=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCce
Confidence 567777777766554 45788876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.02 E-value=0.013 Score=53.35 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=57.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++....+ .. +..+.+=+.+..++
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 355555 8889999999999999999999999998887765433210 00 22222334555667
Q ss_pred HHHHHHHhhcc-cCCCEEEecCCC
Q 011394 88 DETIKTLSAYM-EKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l-~~g~iiId~st~ 110 (487)
+++++++.... .+-+++|+....
T Consensus 71 ~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEeccccc
Confidence 77777776655 345677765543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.02 E-value=0.013 Score=54.02 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=56.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.||++++++++.++.. .+ +..+..=+.+...
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----------------DN---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----------------CC---eeEEecccccHHH
Confidence 45555 47899999999999999999999999998877654321 11 2222233445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++..++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 77777777666666678877654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.02 E-value=0.018 Score=45.58 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=86.1
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+--.+..||-|-|. |..|+--++...+.|-+|.. ..+|.+--+ . ..++.++++.+|++++ ..+|.-++
T Consensus 1 mili~k~trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkgG~------~--~~giPVf~tV~eAv~~-~~~d~SvI 70 (121)
T d1oi7a1 1 MILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKGGM------E--VLGVPVYDTVKEAVAH-HEVDASII 70 (121)
T ss_dssp CCSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTC------E--ETTEEEESSHHHHHHH-SCCSEEEE
T ss_pred CEEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCCCc------E--EECCchHhhHHHHHHh-cCCeEEEE
Confidence 454555678999995 99999999999999887653 333433110 0 1147789999999987 46999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.||++.+.+.+++.+...+ ..+++-+-...+.++.++.+.++.++..+++
T Consensus 71 fVPp~~a~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 71 FVPAPAAADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp CCCHHHHHHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred eeCHHHHHHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 9999877777777776544 2355555566666778888888888877664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.98 E-value=0.0071 Score=51.12 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=38.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+.+.+.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 47999999999999998888899999999999999887766553
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.022 Score=51.79 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=59.7
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| |.+-+|.++|+.|++.|++|++++|++++++++.++....+ . ..+++.+. +.++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~---~~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------Y---PGTLIPYRCDLSNE 73 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------C---SSEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---CceEEEEEccCCCH
Confidence 56666 68899999999999999999999999999888776543210 0 02333322 4555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.++.+++.+.....+=+++|+....
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEecccc
Confidence 67777777777665555777776543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.94 E-value=0.0026 Score=57.93 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|+|.|||.|.-|...|..|+++|++|+++++++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6899999999999999999999999999998743
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.93 E-value=0.015 Score=53.03 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=55.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.||++++++++.++.. .. +..+..=+.+..+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------------DA---ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------Cc---eEEEEcccCCHHH
Confidence 34444 5 6679999999999999999999999998877665321 11 2222222445566
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|+....
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 66 WQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCccEEEecCcc
Confidence 777777776655555777776543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.93 E-value=0.011 Score=46.68 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=54.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|.|||.|.+|..-++.|.+.|.+|++++..... ...+.+.+ +++. .-+.++ +.++++|+.+..+
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~d----l~~~~lv~~at~d 82 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETL----LDSCWLAIAATDD 82 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGG----GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHH----hCCCcEEeecCCC
Confidence 48999999999999999999999999999876543 33333222 1221 122333 2337888888765
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+ .+..-+ ....++..++|+...
T Consensus 83 ~-~~n~~i---~~~a~~~~ilVNv~D 104 (113)
T d1pjqa1 83 D-TVNQRV---SDAAESRRIFCNVVD 104 (113)
T ss_dssp H-HHHHHH---HHHHHHTTCEEEETT
T ss_pred H-HHHHHH---HHHHHHcCCEEEeCC
Confidence 4 343332 222234456666544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.014 Score=52.90 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=57.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+.++.++..++... -.. .+++.+ =+.+.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~g----~~~~~~~~Dv~~~ 67 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE--------------KYG----VETMAFRCDVSNY 67 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHC----CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------HhC----CcEEEEEccCCCH
Confidence 45555 4 67799999999999999999999999987766543211 001 233332 23455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++++.....+=+++|+....
T Consensus 68 ~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 68 EEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 67777777777666556788876543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0094 Score=55.66 Aligned_cols=88 Identities=14% Similarity=0.320 Sum_probs=60.6
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+++| |.+-+|.++|+.|++.|++|.+.+|+++++++..++.... ..+ ....+++.+. +.+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~----------~~~----~~~~~~~~~~~Dvs~~ 78 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN----------LPP----TKQARVIPIQCNIRNE 78 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------SCT----TCCCCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----------hcc----ccCceEEEEeccCCCH
Confidence 46666 4777999999999999999999999999888776543210 000 0013454443 3555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+.....+=+++|+....
T Consensus 79 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 79 EEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 67778887777766667888876543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.86 E-value=0.012 Score=53.45 Aligned_cols=80 Identities=9% Similarity=0.154 Sum_probs=56.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++.. .+.+++ =+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~ 64 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG----------------------ERSMFVRHDVSSE 64 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEEECCCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC----------------------CCeEEEEeecCCH
Confidence 56677 4 6779999999999999999999999998887765432 112222 13344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+.....+=+++|+....
T Consensus 65 ~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 65 ADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCeEEecccc
Confidence 56777777776666566788876644
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.85 E-value=0.014 Score=53.11 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=56.3
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.||++++++++.++... + +..+..=+.+..+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP-----------------A---ACAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------c---eEEEEeeCCCHHH
Confidence 56666 478899999999999999999999999988877654311 0 1111112345556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|+....
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCccEEEeeccc
Confidence 777777776665556777776543
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.2 Score=44.47 Aligned_cols=176 Identities=12% Similarity=0.126 Sum_probs=102.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCcEEEEe-----------CChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIA-EKGFPISVYN-----------RTTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~d-----------r~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~ 73 (487)
-++|.|=|+|++|..+|+.|. +.|..|+..+ .+.+.+..+.+.......+ ..+ ..+.+++... +
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 107 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--D 107 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHTS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eecccccccc--c
Confidence 358999999999999999997 4698887543 2334444444332110000 111 2245666653 4
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCChhhhcCCCccccCC
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPGG 151 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--vsgg~~~a~~G~~i~~gg 151 (487)
||+++-|-....-. .+-.+.+. -++|+...|.. . +.+..+.|.++|+.|+.-- -+||..
T Consensus 108 ~DI~~PcA~~~~I~----~~~a~~l~-~~~I~e~AN~p-~-t~~a~~~L~~rgI~~~PD~~aNaGGVi------------ 168 (234)
T d1b26a1 108 VDILVPAALEGAIH----AGNAERIK-AKAVVEGANGP-T-TPEADEILSRRGILVVPDILANAGGVT------------ 168 (234)
T ss_dssp CSEEEECSCTTCBC----HHHHTTCC-CSEEECCSSSC-B-CHHHHHHHHHTTCEEECHHHHTTHHHH------------
T ss_pred cceeecchhccccc----HHHHHHhh-hceEeecCCCC-C-CHHHHHHHHHCCeEEechHHhcCCCee------------
Confidence 99998886554322 22334443 46888888865 3 3345677899999988543 222221
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
-..++ +.+..... .+ -..-+.+.+...+...+.+.+..+++.+ +|+.+...++
T Consensus 169 -~s~~E----~~qn~~~~--------~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 169 -VSYFE----WVQDLQSF--------FW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp -HHHHH----HHHHHTTC--------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred -eeehh----cccccchh--------cc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 01122 22222211 11 0123455666666777788888899998 9988776554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.85 E-value=0.021 Score=52.03 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=58.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.|| | .+-+|.++|+.|++.|++|.+.||+++++++..+..... ... .+++.+. |.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--------------~~~---~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET--------------APD---AEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------CTT---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------CCC---CeEEEEeccCCCH
Confidence 45666 4 667999999999999999999999999887766543210 011 3344332 3455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.+++.+++++.....+=+++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 6777777777776666678888654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0044 Score=49.10 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.+||||||.|..|+.|+....+-|++|.++|++++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 468999999999999999999999999999998663
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0038 Score=53.94 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=33.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.+||+|||.|..|..-|..|+++||+|++|++++.-
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 468999999999999999999999999999998653
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.046 Score=44.51 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||+|+| .|+||+.++..+.+. ++++. .+|+.. ++..... ..+|+||=...+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------------------~~~~~~~--~~~DvvIDFS~p~- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------------------CTHHHHT--TTCSEEEECCCTT-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------------------chhhhcc--ccCCEEEEcccHH-
Confidence 799999 699999999887654 56655 455431 1112221 1389998876543
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHH-HHcCCeEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAM-AELGLLYLGMGVS 135 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l-~~~g~~~i~~pvs 135 (487)
.+.+.++... ..|.-+|..||+....-.+. .+.+ +.+.+..+-+|-+
T Consensus 56 ~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNf 104 (135)
T d1yl7a1 56 VVMGNLEFLI---DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 104 (135)
T ss_dssp THHHHHHHHH---HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred HHHHHHHHHH---hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence 5666665444 46777888888885543333 3322 3456666666643
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.82 E-value=0.016 Score=52.95 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=60.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+++| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . + . .++..+. +.+.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvt~~ 69 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG------V-S------E---QNVNSVVADVTTD 69 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------c---CceEEEEccCCCH
Confidence 68888 68899999999999999999999999999888776543210 0 0 0 1233222 4555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 70 AGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHHhCCCCEeeccccc
Confidence 67778887777766666888887654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.79 E-value=0.017 Score=52.34 Aligned_cols=82 Identities=7% Similarity=0.150 Sum_probs=58.8
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.+|++++.+++.+.... . .++.++ =+.+.
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----------------P---DQIQFFQHDSSDE 66 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------------T---TTEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------C---CcEEEEEccCCCH
Confidence 57777 578899999999999999999999999988776654310 0 122222 24555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+.....+=+++|+....
T Consensus 67 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 67 DGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEecccc
Confidence 67778887777766666788876544
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.79 E-value=0.0034 Score=56.75 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.71 E-value=0.018 Score=52.62 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCCCCCCCcEEEEcc-c--HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 1 MVEGKQLTRIGLAGL-A--VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
||+|+ ++-|.|. | -+|.++|+.|++.|++|++.+|+++..+.+.+. .+....+.++
T Consensus 2 ~L~gK---~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l------------------~~~~~~~~~~ 60 (274)
T d2pd4a1 2 FLKGK---KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPI------------------AQELNSPYVY 60 (274)
T ss_dssp TTTTC---EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHH------------------HHHTTCCCEE
T ss_pred cCCCC---EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH------------------HhhCCceeEe
Confidence 45555 4666675 5 499999999999999999999986433222211 1111113444
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..-+.....++.+++.+.....+-+++|.....
T Consensus 61 ~~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 61 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred eecccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence 444444555666666666555555566655443
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0026 Score=46.89 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|++|||||.|-.|+.|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 56899999999999999999999999999998754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.66 E-value=0.021 Score=51.90 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCCCCCCcEEEE--cccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 1 MVEGKQLTRIGLA--GLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 1 ~~~~~~~~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
||+|+ +.+| |.+-+|..+|+.|++.|++|.+.+|+ ++..+++.+.... ... .+++
T Consensus 1 ~L~gK----~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--------------~~g----~~~~ 58 (260)
T d1x1ta1 1 MLKGK----VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--------------QHG----VKVL 58 (260)
T ss_dssp CCTTC----EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--------------HHT----SCEE
T ss_pred CCCcC----EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH--------------hcC----CcEE
Confidence 66665 6666 57779999999999999999999997 4555555433211 001 2333
Q ss_pred EEe--cCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IML--VKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~--vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+. +.+..+++.+++++.....+=+++|+....
T Consensus 59 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 59 YDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp EECCCTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 332 345556777777777666566788876543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.64 E-value=0.0049 Score=53.12 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (487)
+||+|||.|..|...|..|++.|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 589999999999999999999999 5999998765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0044 Score=52.61 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC-CCcEE-EEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+.+||+|+| .|+||+.+++.+.+. ++++. +++|..... ..-.......+..++....+++++.+. +|+||-..
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDFs 79 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDFT 79 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEec
Confidence 457999999 599999999988775 55654 556643221 000000000001134556677776665 99998876
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv 134 (487)
.+ ..+.+.++.. ...+.-+|-.||+......+..+.+. +.+..+-+|-
T Consensus 80 ~p-~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~i~~~a-~~ipi~~apN 127 (162)
T d1diha1 80 RP-EGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQAIRDAA-ADIAIVFAAN 127 (162)
T ss_dssp CH-HHHHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHT-TTSCEEECSC
T ss_pred cH-HHHHHHHHHH---HhccceeEEecCCCcHHHHHHHHHHc-CCCCEEEEcc
Confidence 54 3455555433 34678888888887554333333332 2344444453
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.63 E-value=0.023 Score=52.10 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=59.3
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . + . .++..+. +.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG------V-S------E---KQVNSVVADVTTE 69 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------C---CceEEEEccCCCH
Confidence 46666 57889999999999999999999999999888776543210 0 0 0 1233332 3455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 67777777777666566788876543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.60 E-value=0.008 Score=52.90 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=48.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEE--EeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISV--YNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~v 81 (487)
+|++|-|.| .|.+|+.+++.|++.|++|.+ ..|++++...+...... +. -..+.+.+.+.++++|.|+.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADV-----FIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTE-----EECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEE-----EEeeeccccccccccccceeeEEEE
Confidence 578999998 799999999999999987554 56888776544321110 01 1234444444455588888775
Q ss_pred C
Q 011394 82 K 82 (487)
Q Consensus 82 p 82 (487)
.
T Consensus 77 ~ 77 (252)
T d2q46a1 77 S 77 (252)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.54 E-value=0.038 Score=50.24 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| |.+-+|..+|+.|++.|++|.+++|++++++++.++.... . .++..+. +.+.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 69 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----------------G---FQVTGSVCDASLR 69 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEeccCCCH
Confidence 56666 5777999999999999999999999999988776543211 0 2222222 3444
Q ss_pred hhHHHHHHHHhhcc-cCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYM-EKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l-~~g~iiId~st~ 110 (487)
.+++.+++.+.... .+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 70 PEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcccccccccc
Confidence 56667776666544 234677776544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.017 Score=52.18 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=34.9
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
+-|.| .+-+|.++|+.|++.|++|.+.||++++++++.++.
T Consensus 10 ~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc
Confidence 44445 778999999999999999999999999988877654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.42 E-value=0.028 Score=51.32 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=57.1
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.||++++++++.++.... .. ...+-.=+.+..+
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---------------DV---ISFVHCDVTKDED 68 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---------------TT---EEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---------------Cc---eEEEEccCCCHHH
Confidence 56666 5778999999999999999999999999988877653210 00 1111111345567
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|+...
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCcceeccccc
Confidence 77777777666556677877654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.41 E-value=0.018 Score=52.05 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEe-C----------ChHHHHHHH--------HhhhhcCCCCccccCCHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYN-R----------TTSKVDETV--------ERAKKEGDLPLFGFRDPESFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~d-r----------~~~~~~~l~--------~~~~~~g~~~~~~~~s~~e~~ 68 (487)
++|.|=|+|++|..+|+.|.+.|..|+.++ . +.+.+.+.. +..... .+.....+.+++.
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~ 109 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK--DNAEFVKNPDAIF 109 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT--SCCCCCSSTTGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc--cCceEeeCcchhc
Confidence 589999999999999999999999987553 2 222222111 000000 0122334455555
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.. +||+++-|-..+.-.. +..+.+ +-++|+...|.. . +.+..+.+.++|+.|+.-
T Consensus 110 ~~--~~DIliPcA~~~~I~~----~~a~~i-~ak~IvegAN~p-~-t~~a~~~L~~rgI~~~PD 164 (242)
T d1v9la1 110 KL--DVDIFVPAAIENVIRG----DNAGLV-KARLVVEGANGP-T-TPEAERILYERGVVVVPD 164 (242)
T ss_dssp GC--CCSEEEECSCSSCBCT----TTTTTC-CCSEEECCSSSC-B-CHHHHHHHHTTTCEEECH
T ss_pred cc--cccEEeecchhccccH----HHHHhc-ccCEEEecCCCC-C-ChhHHHHHHhCCeEEeCc
Confidence 42 4999999876542111 222334 457888888875 3 344567888999988854
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.39 E-value=0.031 Score=51.23 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=57.1
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+.|| |.+-+|.++|+.|++.|++|.+.||++++++++.++....+ .. . .. ...+..=+.+..+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~----~----~~---~~~~~~Dv~~~~~ 70 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VP----A----EK---INAVVADVTEASG 70 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CC----G----GG---EEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CC----C----cc---eEEEEeeCCCHHH
Confidence 45566 57789999999999999999999999999888776543210 00 0 00 1122222345566
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|+...
T Consensus 71 v~~~~~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCceEEEeecc
Confidence 77777777766555577777643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.38 E-value=0.012 Score=50.28 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=57.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcC--CCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQ--KPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~--~advIi~~vp 82 (487)
-.+|.|+|+|.+|...++.+...|.. |.+.|+++++.+.+.+.+... -+. ...+..+.++++. ..|+||.|+.
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH---VINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE---EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE---EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 34799999999999999988888875 557799999988877665321 010 1123333333322 3688888876
Q ss_pred CChhHHHHHHHHhhcccCCCEEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDG 107 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~ 107 (487)
....++ .....++++-.++-.
T Consensus 106 ~~~~~~----~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 106 SPEILK----QGVDALGILGKIAVV 126 (174)
T ss_dssp CHHHHH----HHHHTEEEEEEEEEC
T ss_pred cHHHHH----HHHhcccCceEEEEE
Confidence 543322 233344444444443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.38 E-value=0.038 Score=49.90 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=53.8
Q ss_pred CCCCCCCCcEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
|++|+ +.+| |.+-+|..+|+.|++.|++|.+.||++++.+. .+... ...+-
T Consensus 2 ~l~GK----~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~~----------------------~~~~~ 54 (248)
T d2d1ya1 2 LFAGK----GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAIG----------------------GAFFQ 54 (248)
T ss_dssp TTTTC----EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHHT----------------------CEEEE
T ss_pred ccCCC----EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcC----------------------CeEEE
Confidence 45555 4455 48899999999999999999999999876432 22111 12222
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+=|.+..+++.+++++.....+=+++|+...
T Consensus 55 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 55 VDLEDERERVRFVEEAAYALGRVDVLVNNAA 85 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EeCCCHHHHHHHHHHHHHhcCCCCeEEEeCc
Confidence 2234555677777777666555577777543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.019 Score=52.60 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=34.1
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
+-|.| .+-+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus 17 alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 44445 56699999999999999999999999998887654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.32 E-value=0.05 Score=46.30 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=39.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (487)
..|.|+|+|-+|...++.+...|. +|++.|+++++.+...+.+.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 369999999999999999999995 89999999999987777664
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.30 E-value=0.022 Score=51.30 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE-e-cCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM-L-VKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~-~-vp~~ 84 (487)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+.++++++.++.. .+++.+ + +.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 35555 5 6669999999999999999999999988776654321 122222 1 3445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
..+++.++.+.....+=+++|+...
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnAg 88 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFAG 88 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHHHhCCccEeccccc
Confidence 5677777777776666678887643
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.29 E-value=0.023 Score=52.08 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
+++||-|+| .|.+|..++..|.++||+|++.+|++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 457899998 699999999999999999999998753
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.037 Score=43.58 Aligned_cols=113 Identities=16% Similarity=0.068 Sum_probs=82.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..||-|-|. |.-|+--+..+.+.|-+|.. ..+|.+-- .. ..++.++++.+|+++. ..+|.-++.||++.
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVa-GVtPgkgG------~~--~~giPVf~sV~eAv~~-~~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVG-GVTPGKGG------TT--HLGLPVFNTVREAVAA-TGATASVIYVPAPF 75 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTT------EE--ETTEEEESSHHHHHHH-HCCCEEEECCCGGG
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEE-EEccCCCC------cc--cCCCchhhHHHHHHHH-hCCCeEEEeccHHH
Confidence 468999996 99999999999999987653 23333311 00 1147789999999886 35899999999988
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+.+.+++.+...+ ..+++-+-...+.++.++.+.++.++..+++
T Consensus 76 a~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 76 CKDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 8888877776544 3455556666777888888888888877663
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.16 E-value=0.0081 Score=54.66 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=30.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.+|.+.|..|+++|++|+++|++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999864
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.15 E-value=0.0075 Score=56.77 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
++||.|||+|.-|...|..|+++|++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999999999999999999999998753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.13 E-value=0.037 Score=49.66 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=58.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCc-------EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFP-------ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~-------V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+|.+| | .+-+|..+|+.|++.|++ |.+++|++++++++.++....+ .++..+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-------------------~~~~~~ 62 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-------------------ALTDTI 62 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-------------------CEEEEE
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-------------------CcEEEE
Confidence 56666 5 577999999999999997 8999999999888765432110 222222
Q ss_pred --ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 --LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 --~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+..+++.+++.+.....+=+++|+....
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 63 TADISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp ECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 2455567778888777766666788876544
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.11 E-value=0.022 Score=51.76 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.+|+.++.+++.++... +. . .+++.+. +.+.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------~~-g----~~~~~~~~Dv~~~ 71 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-------------EF-G----VKTKAYQCDVSNT 71 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH-------------HH-T----CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------------Hh-C----CceEEEEccCCCH
Confidence 56666 466799999999999999999999999887766543211 00 1 2333332 4455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++++.....+=+++|+....
T Consensus 72 ~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 72 DIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEecccccc
Confidence 66777777777665555677776543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.07 E-value=0.028 Score=48.36 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCC-CcEEEEe-CC-hH-HHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RT-TS-KVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~d-r~-~~-~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~ 79 (487)
++.|||||| .|..|+-|.+.|.++- +++.... ++ .. +..+....... .... .....++.... +|++|+
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~Dvvf~ 77 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLIT---QDLPNLVAVKDADFSN---VDAVFC 77 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTT---SCCCCCBCGGGCCGGG---CSEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccc---cccccchhhhhhhhcc---cceeee
Confidence 346899998 8999999999999874 3655443 22 11 12222111100 0111 11122233344 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|++.. ... .+.+.....+||.+...
T Consensus 78 alp~~~s-~~~----~~~l~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 78 CLPHGTT-QEI----IKGLPQELKIVDLSADF 104 (183)
T ss_dssp CCSSSHH-HHH----HHTSCSSCEEEECSSTT
T ss_pred ccccchH-HHH----HHHHHhcCcccccchhh
Confidence 9998743 332 33344445555655544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.027 Score=50.72 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=34.6
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
+-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 8 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 44445 567999999999999999999999999888877654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.03 Score=51.24 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=59.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLA--GLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiI--GlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++|++| |.+-+|..+|+.|++. |+.|++++|++++.+++.++....+ .+ +.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~---~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------LS---PRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------CC---CEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEEecCCH
Confidence 479999 7889999999999975 8999999999999888776543210 01 33443335555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.++.+++.+.....+=+++|+....
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi 91 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGI 91 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 66777777776654444677765543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.046 Score=49.40 Aligned_cols=88 Identities=11% Similarity=0.202 Sum_probs=60.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 84 (487)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.+++.+..... .. . .++..+ =+.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------~~------~---~~~~~~~~Dv~~~ 66 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------FE------P---QKTLFIQCDVADQ 66 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------SC------G---GGEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------cC------C---CcEEEEEeecCCH
Confidence 46666 4 677999999999999999999999999988776543210 00 0 223322 24555
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
..++++++.+.....+=+++|+.....+.
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVNNE 95 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHcCCcCeeccccccccc
Confidence 67778887777766566788887655433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.99 E-value=0.075 Score=48.19 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=53.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 83 (487)
|+.|| |.+-+|..+|+.|++.|++|.+.+|+.+ ..+++.+..... ..+++.+. +.+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-------------------g~~~~~~~~Dvt~ 68 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-------------------GGEAIAVKGDVTV 68 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc-------------------CCcEEEEEccCCC
Confidence 57777 5788999999999999999999999854 455444332111 02333222 344
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+++.+++.+.....+=+++|+....
T Consensus 69 ~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 69 ESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEeecccee
Confidence 456677777766655555777776543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.98 E-value=0.02 Score=48.63 Aligned_cols=92 Identities=8% Similarity=0.105 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|.|. |.+|....+.....|.+|++.++++++.+.+.+.+... +.-..+..+.....+.+|+||-++.+ .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccch--h
Confidence 46889895 99999998888888999999999999988877665421 11122222333344568999887752 3
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
+. .....+.++-.++..+.
T Consensus 103 ~~----~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 103 VE----ESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp HH----HHHTTEEEEEEEEEC--
T ss_pred HH----HHHHHHhcCCcEEEEeC
Confidence 33 34455666666666543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.93 E-value=0.0085 Score=54.36 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
+||.|||.|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.86 E-value=0.011 Score=52.11 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (487)
+||.|||.|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999996 799999874
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.85 E-value=0.0092 Score=54.81 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.+|.|||.|..|..+|..|+++|++|.+++++++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999999999999999998753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.84 E-value=0.042 Score=49.57 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=52.7
Q ss_pred cEEEE-cc-c--HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLA-GL-A--VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiI-Gl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+.+| |. | -+|..+|+.|++.|++|.+.+|+++..+...+.... .. .+..+-.=+.+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~D~~~~ 70 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA---------------LG---GALLFRADVTQD 70 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH---------------TT---CCEEEECCTTCH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc---------------cC---cccccccccCCH
Confidence 44554 75 3 499999999999999999999986654433221110 00 122222234455
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+++.+++.+.....+=+++|+.....
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccc
Confidence 667777777666555556788766544
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.82 E-value=0.0094 Score=55.11 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
+||.|||.|..|...|..|+++|++|+++++++.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~ 64 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 5899999999999999999999999999998753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.81 E-value=0.0021 Score=52.24 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred cEEEEcccHHHHHHHHHHH-HCCCcEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIA-EKGFPISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~-~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|.|+|+|.+|..++..+. +.||++.++ |-++++...... +.++...+.++++... ..++.++++|.. .
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~------Gi~V~~~~~l~~~~~~--~i~iai~~i~~~-~ 75 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR------GGVIEHVDLLPQRVPG--RIEIALLTVPRE-A 75 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET------TEEEEEGGGHHHHSTT--TCCEEEECSCHH-H
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC------CEEEecHHHHHHHHhh--cccEEEEeCCHH-H
Confidence 7999999999999998764 357777755 888876432111 1112222334444432 356666777653 4
Q ss_pred HHHHHHHHh
Q 011394 87 VDETIKTLS 95 (487)
Q Consensus 87 v~~vl~~l~ 95 (487)
.+++++.+.
T Consensus 76 ~~~I~d~l~ 84 (126)
T d2dt5a2 76 AQKAADLLV 84 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.79 E-value=0.021 Score=47.92 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=38.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G 71 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG 71 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC
Confidence 4799999999999998888889999999999999988776654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.78 E-value=0.066 Score=45.38 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=38.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.+.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa 73 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 73 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence 469999999999999999998886 78899999999987776654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.77 E-value=0.002 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS 34 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~ 34 (487)
|||.|||.|.+|...|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 689999999999999999999998643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.044 Score=49.13 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=35.3
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
|+++| |.+-+|.++|+.|++.|++|.+.+|+.++.+++.++
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 57777 577899999999999999999999999887776553
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.75 E-value=0.055 Score=49.82 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEe-----------CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYN-----------RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
++|.|=|.|++|...|+.|.+.|..|+..+ .+.+.+.+..........+.. ...+.+++... +||+
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~DI 113 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPK-AKIYEGSILEV--DCDI 113 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTT-SCBCCSCGGGC--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccc-cccCCcccccC--CccE
Confidence 579999999999999999999999887553 344555554433211000000 01122334332 4999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
++-|-....-.. +-++.+ .-++|+...|.. . +.+..+.|.++|+.|+.-
T Consensus 114 liPaA~~~~I~~----~~a~~l-~ak~I~EgAN~P-~-t~eA~~~L~~~gI~viPD 162 (293)
T d1hwxa1 114 LIPAASEKQLTK----SNAPRV-KAKIIAEGANGP-T-TPQADKIFLERNIMVIPD 162 (293)
T ss_dssp EEECSSSSCBCT----TTGGGC-CCSEEECCSSSC-B-CHHHHHHHHHTTCEEECH
T ss_pred EeeccccccccH----HHHHHH-hhCEEeccCCCC-C-CcchHHHHHHCCCEEeCh
Confidence 998865542111 223334 346888888775 3 345567788999988853
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.02 Score=51.23 Aligned_cols=68 Identities=9% Similarity=0.149 Sum_probs=44.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++-|.| .+-+|..+|+.|++.|++|.+.+|+++.+++...+.. .....+..+++.+.+..-|++|-..
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnnA 74 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLNA 74 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEecc
Confidence 354556 6779999999999999999999999887654321110 0112234455555555566666543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=94.66 E-value=0.067 Score=48.41 Aligned_cols=118 Identities=13% Similarity=0.003 Sum_probs=76.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-=+|+|. | .++..+++.|.+|+++|.++..++...+..... +.+.+ ...+..+.... ...|+|+..... ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHc-CCceeEEeccccccccc-cccchhhhcccc-cc
Confidence 4688899997 4 355667888999999999999888776543322 11122 23455554432 347888876543 35
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+..+++.+...++||-.++- |.........+.+.+.+.|...+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888888876653 223334555667777888877654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.66 E-value=0.13 Score=43.39 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=37.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+|+|.+|...++.+...|. .|++.|+++++.+...+.+.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga 74 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 74 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC
Confidence 479999999999999999999997 68889999999876665543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.59 E-value=0.012 Score=55.62 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChH
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTS 41 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~ 41 (487)
..|+||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 35678999999999999999998876 69999999854
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.56 E-value=0.007 Score=50.80 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=51.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
||||||+ |..|.-|.+.|.++.+ ++..+..+...-+.+..... ........++... +.|++++++|..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~-----~~~~~~~~~~~~~---~~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETAFE---GVDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTE-----EEEEEECCTTTTT---TCSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCC-----cccccccchhhhh---hhhhhhhccCcc
Confidence 7999995 9999999999988865 33333322111000000000 0111122222223 389999999875
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.. ..... ....+|..|||.|.-.
T Consensus 75 ~s-~~~~~---~~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 TS-AKYAP---YAVKAGVVVVDNTSYF 97 (154)
T ss_dssp HH-HHHHH---HHHHTTCEEEECSSTT
T ss_pred ch-hhHHh---hhccccceehhcChhh
Confidence 32 22222 2345799999999865
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.51 E-value=0.017 Score=45.64 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5899999999999999999999999999987654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.45 E-value=0.069 Score=47.97 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=53.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 83 (487)
|+++| |.+-+|.++|+.|++.|++|.+.||+++.. +...+.. . .+++.+. +.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~------------------g----~~~~~~~~Dvs~ 63 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL------------------G----RRVLTVKCDVSQ 63 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT------------------T----CCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc------------------C----CcEEEEEeeCCC
Confidence 56776 467899999999999999999999986532 2211111 0 2232222 355
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+++.+++++.....+=+++|+.....
T Consensus 64 ~~~v~~~~~~~~~~~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 64 PGDVEAFGKQVISTFGRCDILVNNAGIY 91 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5677777777777665667888875543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.024 Score=48.20 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=57.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC--CCC---cc--ccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG--DLP---LF--GFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g--~~~---~~--~~~s~~e~~~~l~~advIi~ 79 (487)
+++.|||-+ .+|.+||..|.++|..|+.++.+.... +.. ..... ..+ +. ..+.+++.... +|++|.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTR-GESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EES-CCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--ccc-ccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 479999966 569999999999999999998653210 000 00000 000 00 01124555555 999999
Q ss_pred ecCCChh-HHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAP-VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.+.. +. .+++.+|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9987632 11 2457899999999865
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.34 E-value=0.14 Score=46.47 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=53.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 83 (487)
|+.+| |.+-+|..+|+.|+++|++|++.+++ .+.++++.+..... ..++..+. +.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-------------------GSDAACVKANVGV 79 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh-------------------CCceeeEeCCCCC
Confidence 67777 58999999999999999999999877 44555544432211 02333332 344
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++++..++.+.....+=+++|.....
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag~ 106 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSGV 106 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccc
Confidence 456777777776665555777766543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.02 Score=45.34 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 479999999999999999999999999999865
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.036 Score=49.84 Aligned_cols=123 Identities=13% Similarity=0.173 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-+|+.++.+|++.|. +++++|.+.=....+.++... ....+-.-+....+.+..+ .+++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 589999999999999999999998 888998764333233222100 0000000111122222211 2677777776542
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.-.. . ...+...+++||++... .....+.+.+.+.++.|+.+.+.+
T Consensus 110 ~~~~-~---~~~~~~~divid~~d~~-~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDAE-L---AALIAEHDLVLDCTDNV-AVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHHH-H---HHHHHTSSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhcc-c---cccccccceeeeccchh-hhhhhHHHHHHHhCCCcccccccc
Confidence 2222 2 22344678999987653 333344556667788888766544
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.02 Score=45.79 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 589999999999999999999999999998865
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.26 E-value=0.024 Score=44.93 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
..+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 4689999999999999999999999999999854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.26 E-value=0.026 Score=47.53 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHH-HHHhhc--CCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPE-SFVNSI--QKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~-e~~~~l--~~advIi~~v 81 (487)
.+|.|+|+ |.+|...+..+...|. .|++.++++++.+.+.+.+... -+. ...++. +..+.. ...|++|-|+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY---VINASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE---EEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce---eeccCCcCHHHHHHHHhhcccchhhhccc
Confidence 47999995 9999998888888885 9999999999988877665321 011 011222 222211 2368888887
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.... .++.....++++-.++..+
T Consensus 106 g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 106 NSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCHH----HHTTGGGGEEEEEEEEECC
T ss_pred ccch----HHHhhhhhcccCCEEEEec
Confidence 6543 2334445566665555554
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.22 E-value=0.082 Score=47.38 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=56.1
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 83 (487)
+|.+| |.+-+|..+|+.|++.|++|.+. .|+++..+++.++.... . .+++.+. +.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------------G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----------------C---CcEEEEeCCCCC
Confidence 47777 58889999999999999999885 56777777665543211 0 2233322 445
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+++.+++.+.....+=+++|+....
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg~ 89 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Confidence 556777777777766566788876543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.16 E-value=0.11 Score=46.46 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=97.3
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCcEEEE-eCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAE-KGFPISVY-NRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~-~G~~V~v~-dr~----------~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~a 74 (487)
++|.|-|.|++|..+|+.|.+ .|..|+.. |.+ .+.+.+..........+ +.. .-+.+++... +|
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eecccccccc--cc
Confidence 589999999999999999975 58876643 432 23333333222110000 111 2256666653 59
Q ss_pred cEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCChhhhcCCCccccCCC
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPGGS 152 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--vsgg~~~a~~G~~i~~gg~ 152 (487)
|+++-|-....-.. +..+.+ .-++|+...|... +.+..+.|.++|+.|+.-- .+||..
T Consensus 110 DIl~PcA~~~~I~~----~~a~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iPD~~aNAGGVi------------- 169 (239)
T d1gtma1 110 DVLAPAAIEEVITK----KNADNI-KAKIVAEVANGPV--TPEADEILFEKGILQIPDFLCNAGGVT------------- 169 (239)
T ss_dssp SEEEECSCSCCBCT----TGGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHH-------------
T ss_pred cEEeeccccccccH----HHHHhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEecchhhCCccee-------------
Confidence 99998876542211 223334 3468888887753 3345677899999988542 333321
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
-..++.+ +..... .+ . ..-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 170 ~s~~E~~----qn~~~~--------~w-~-------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 222 (239)
T d1gtma1 170 VSYFEWV----QNITGY--------YW-T-------IEEVRERLDKKMTKAFYDVYNIAKEKN-IHMRDAAYVV 222 (239)
T ss_dssp HHHHHHH----HHHHCC--------CC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred Eeeeeec----cccccc--------cc-c-------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 1122222 222211 11 0 012333444445666677888888888 8887765544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=94.15 E-value=0.069 Score=48.16 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCCCCCCcEEEEcc-cH--HHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 1 MVEGKQLTRIGLAGL-AV--MGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
||+|+ ++-|.|. |. +|.++|+.|++.|++|.+.+|+.++.
T Consensus 3 ~l~gK---~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDGK---RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTTC---EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred CCCCC---EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 45555 4666685 65 99999999999999999999998765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.13 E-value=0.025 Score=45.26 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
..+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 4589999999999999999999999999998764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.10 E-value=0.024 Score=45.21 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
++|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5899999999999999999999999999998764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.08 E-value=0.026 Score=45.06 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=30.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
.++.|||.|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999876
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.06 E-value=0.058 Score=45.50 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=58.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCH-HHHHhhc--CCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDP-ESFVNSI--QKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~-~e~~~~l--~~advIi~~vp~ 83 (487)
.+|.|+|+|.+|...++.+...|. .|++.|+++++.+.+.+.+... -+...++. ++..+.. ...|++|.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 369999999999998888877775 7788899999988777655321 01111222 2222211 236888888865
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.. .++.....++++-.++..+
T Consensus 111 ~~----~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QA----TVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HH----HHHHGGGGEEEEEEEEECC
T ss_pred ch----HHHHHHHHHhCCCEEEEEe
Confidence 43 2344455555555555444
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.04 E-value=0.016 Score=51.32 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~ 41 (487)
+||+|||.|.-|..-|..|+++ |++|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999875 789999998864
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.04 E-value=0.019 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (487)
++|.|||.|.-|..+|..|+++|. +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 9999998764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.023 Score=52.03 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
+..||.|||.|.-|..-|..|+++|++|++++.+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689999999999999999999999999998763
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.93 E-value=0.023 Score=45.29 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998754
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.85 E-value=0.023 Score=52.38 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (487)
.+|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999996 799999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.052 Score=45.86 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=58.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc--CCHHHHHhhc---CCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF--RDPESFVNSI---QKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l---~~advIi~~v 81 (487)
.+|.|+|. |.+|....+.....|.+|++.++++++.+.+.+.+... +.-. .+..+.+..+ +..|+|+-++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHE----VFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCccc----ccccccccHHHHhhhhhccCCceEEeecc
Confidence 47999995 99999998888889999999999998887776655321 1101 1222322211 2367777776
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.. . .++.....+.++-.++..+.
T Consensus 106 g~-~----~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 106 AN-V----NLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp HH-H----HHHHHHHHEEEEEEEEECCC
T ss_pred cH-H----HHHHHHhccCCCCEEEEEec
Confidence 42 1 23444455556555555544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.67 E-value=0.15 Score=45.91 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=51.8
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 83 (487)
|+.+| |.+-+|..+|+.|++.|++|++ ++++.+..+++.++....+ .+++.+ =+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------------AQGVAIQADISK 67 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------------CCceEecCCCCC
Confidence 46666 5788999999999999999997 4667666666655432110 233322 2334
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+++..++.+......=+++|+....
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinnag~ 94 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNSGM 94 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 456666666666554444566665543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.018 Score=53.59 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|-+|.|||+|..|...|..|+++|++|.+++++..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45799999999999999999999999999998743
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.033 Score=44.61 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|..|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 579999999999999999999999999999864
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.078 Score=53.27 Aligned_cols=126 Identities=8% Similarity=0.076 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|..|..++.+|+..|. +++++|.+.-....+..+-- .....+-.-+....+.+..+ .+++-+..+..
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~l-Np~v~i~~~~~-- 102 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 102 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHh-CCCCcEEEEcC--
Confidence 589999999999999999999997 89999977544444443210 00000001111122222322 24544444443
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
...+.++.....+..-++||++.. .+.....+.+.+.++++.|+.+.+.|-
T Consensus 103 ~~~~~~~~~~~~~~~~dvVv~~~~-~~~~~~~l~~~c~~~~ip~i~~~~~G~ 153 (529)
T d1yova1 103 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYGL 153 (529)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CchhhhhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 234444433344556688887754 445555667777888898887765443
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.074 Score=49.77 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=29.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (487)
|||-|+| .|.+|+.++..|++.||+|.+.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6899996 999999999999999999999986
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.13 Score=45.94 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred cEEEEcccH---HHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 9 RIGLAGLAV---MGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 9 kIgiIGlG~---mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
+|-|.|.+. +|.++|+.|++.|++|.+.+|+++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 355556543 78999999999999999999996654443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.32 E-value=0.04 Score=43.68 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|.+|.-+|..|++.|.+|+++.+..
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 579999999999999999999999999998654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.26 E-value=0.11 Score=43.78 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=49.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCcccc---CCHHHHHhhc--CCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGF---RDPESFVNSI--QKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~---~s~~e~~~~l--~~advIi~~v 81 (487)
.+|.|+|+|-+|...+..++..|. .|++.|+++++.+...+.+... -+... +...+..+.. ...|++|.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 369999999999999999999985 8889999999988777655321 01111 1222222211 2467888777
Q ss_pred CCC
Q 011394 82 KAG 84 (487)
Q Consensus 82 p~~ 84 (487)
...
T Consensus 107 G~~ 109 (176)
T d2jhfa2 107 GRL 109 (176)
T ss_dssp CCH
T ss_pred Cch
Confidence 654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.23 E-value=0.039 Score=44.68 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5899999999999999999999999999987653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.10 E-value=0.087 Score=45.54 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=35.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 50 (487)
.+|.|+|+|.+|...+..+...|. .|++.|+++++++.+.+.+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 479999999999887777766776 7889999999988776654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.039 Score=48.03 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=30.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 48999999999999999999999999999975
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.93 E-value=0.037 Score=50.17 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
+++||-|+| .|.+|+.++..|.++||+|++.+|++..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 357899998 5999999999999999999999997654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.78 E-value=0.049 Score=48.29 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
..+|.|||.|.-|...|..|++.|++|++++++.+-
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 468999999999999999999999999999987653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.70 E-value=0.29 Score=41.44 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCCccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLPLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|-=||+|.=..+++ |++.+.+|+.+|.+++.++.+.+.....+ ..+++. ..+..+.....+..|.|++..+..
T Consensus 35 ~~VLDiGcGsG~~s~~--lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~- 111 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLE--LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG- 111 (186)
T ss_dssp CEEEEESCTTSHHHHH--HHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-
T ss_pred CEEEEEECCeEccccc--ccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-
Confidence 3566677776544443 45667799999999998887766543321 013322 345666666566789998876543
Q ss_pred hHHHHHHHHhhcccCCCEE-EecCCCCchhHHHHHHHHHHcCC
Q 011394 86 PVDETIKTLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~ 127 (487)
....+++.+...|++|..+ +... .........+.+...+.
T Consensus 112 ~~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 112 ELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGF 152 (186)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCC
Confidence 6788888888888877654 4332 22344444555665543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.65 E-value=0.043 Score=49.76 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
.|.|||.|.+|.+.|..|+++|++|+++|+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4899999999999999999999999999985
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.65 E-value=0.058 Score=42.31 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.++.|||.|..|.-+|..|++.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 5799999999999999999999999999987643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.041 Score=49.53 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=34.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 57777 79999999999999999999999999988766543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.48 E-value=0.043 Score=50.93 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.+|.|||+|.-|..+|..|.+.|++|++++++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4799999999999999999999999999999865
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.30 E-value=0.51 Score=39.22 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=37.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+|+|.+|...+..++..|- .|++.|+++++.+...+.+.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 469999999999999988888876 68899999999988776653
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.16 E-value=0.03 Score=49.30 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-------cEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-------PISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (487)
.||+|||.|.-|.+-|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 389999999999999999999884 7999999865
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.15 E-value=0.14 Score=47.86 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
+||-|.| .|.+|+.++..|.++|++|.+++|+..+...+.
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~ 49 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLF 49 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHH
Confidence 6899997 999999999999999999999999876544433
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=92.11 E-value=0.31 Score=43.94 Aligned_cols=42 Identities=12% Similarity=0.349 Sum_probs=32.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHh
Q 011394 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~ 49 (487)
|-|+|| |.+-+|..+|+.|++.|++|.+.+ ++.+..+++.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~ 46 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT 46 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence 468888 567899999999999999999865 556666665544
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.08 E-value=0.043 Score=43.73 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 4799999999999999999999999999988654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.05 E-value=0.091 Score=41.31 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5899999999999999999999999999998654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.04 E-value=0.065 Score=50.61 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
+.|||-|.| .|.+|+.++..|.++||+|+++|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 357999996 99999999999999999999998753
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.99 E-value=0.49 Score=42.36 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=64.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEE-eC----------ChHHHHHHHHhhhhcCCCCcc--------ccCCHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVY-NR----------TTSKVDETVERAKKEGDLPLF--------GFRDPESFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~-dr----------~~~~~~~l~~~~~~~g~~~~~--------~~~s~~e~~ 68 (487)
++|.|=|.|++|...|+.|.+.|..|+.. |. +.+.+.++...........+. ..-+.+++.
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPW 116 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcc
Confidence 48999999999999999999999988743 32 223322222111000000000 001122332
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.. +||+++-|-....-..+..+.+.. ++ ++|+...|.. .+.+.....+.++|+.++.-
T Consensus 117 ~~--~~DiliPcA~~~~I~~~~a~~l~a---~~ck~I~EgAN~p-~t~ea~~~ll~~~gI~vvPD 175 (255)
T d1bgva1 117 GQ--KVDIIMPCATQNDVDLEQAKKIVA---NNVKYYIEVANMP-TTNEALRFLMQQPNMVVAPS 175 (255)
T ss_dssp GS--CCSEEECCSCTTCBCHHHHHHHHH---TTCCEEECCSSSC-BCHHHHHHHHHCTTCEEECH
T ss_pred cc--cccEEeeccccccccHHHHHhhhh---cCceEEecCCCCC-cchHHHHHHHHhcCCEEehH
Confidence 21 499988775544322333344422 22 5788777764 44433344566679888743
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.98 E-value=0.12 Score=43.59 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=35.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
.+|-|.| .|.+|...++.+...|.+|.+..+++++.+.+.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G 70 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 70 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccccccc
Confidence 4688888 599999999988888999999999998877665443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.063 Score=49.57 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48899999999999999999999999999864
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.83 E-value=0.067 Score=47.46 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.|.|||.|..|...|..|+++|++|.++++++.-
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 6999999999999999999999999999988653
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.82 E-value=0.065 Score=47.97 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.6
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|||.|| | .+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 677777 4 678999999999999999999998754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=91.78 E-value=0.078 Score=49.79 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
+.++|.|+| .|.+|+.++..|.++||+|++..|++.+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 346899998 79999999999999999999999987654
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=0.35 Score=37.96 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=60.8
Q ss_pred CCCcEEEEccc-----------HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCC
Q 011394 6 QLTRIGLAGLA-----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 6 ~~~kIgiIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~a 74 (487)
..+||-|||.| +.+...++.|.+.|+++++.|.||+.+ .++.+ + +
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------a 58 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------S 58 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------S
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------c
Confidence 34689999997 678888999999999999999998853 22222 1 4
Q ss_pred cEEE-EecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 75 RVII-MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 75 dvIi-~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
|.+. ..+.. ..+.+++ ..-+|..+++-.+. .+...++..+.+.|+..++
T Consensus 59 D~lYfeplt~-e~v~~Ii----~~E~p~~ii~~~GG---Qtalnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 59 DRLYFEPVTL-EDVLEIV----RIEKPKGVIVQYGG---QTPLKLARALEAAGVPVIG 108 (121)
T ss_dssp SEEECCCCSH-HHHHHHH----HHHCCSEEECSSST---HHHHTTHHHHHHTTCCBCS
T ss_pred CceEEccCCH-HHHHHHH----HHhCCCEEEeehhh---hhHHHHHHHHHHcCCcEEC
Confidence 5554 35432 2333333 33346667766654 3555667777777765443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=91.36 E-value=0.19 Score=46.97 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=36.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|+.++..|.++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 4799996 8999999999999999999999999887766544
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.25 E-value=0.82 Score=41.86 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=51.7
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHH---------HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK---------VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~---------~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
|+.+| |.+-+|..+|+.|++.|++|.+.|++.+. ++++.++ .-.. ...+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~ 67 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE-----------------IRRR---GGKA 67 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHH-----------------HHHT---TCEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHH-----------------Hhhc---cccc
Confidence 57777 57779999999999999999999887542 2222221 1111 2333
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
..-+.+...++.+++.+.....+=+++|+...
T Consensus 68 ~~d~~~~~~~~~~v~~~~~~~G~iDiLVnNAG 99 (302)
T d1gz6a_ 68 VANYDSVEAGEKLVKTALDTFGRIDVVVNNAG 99 (302)
T ss_dssp EEECCCGGGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred ccccchHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 34444445667777666665555577777643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.99 E-value=0.052 Score=48.93 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|||-|.|. |.+|+.++..|.++||+|++.||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 78999985 9999999999999999999999864
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.91 E-value=0.15 Score=45.89 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=36.5
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHH---CCCcEEEEeCChHHHHHHHHhh
Q 011394 8 TRIGLA-G-LAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 8 ~kIgiI-G-lG~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
-||+|| | .+-+|..+|+.|++ +|++|.+.+|++++++++.++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence 379999 5 56799999999996 7999999999999988877643
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.12 Score=43.38 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG 30 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G 30 (487)
++.+|+++|+|.+|+.+.+.|.++.
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 3458999999999999999998754
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.79 E-value=0.088 Score=42.04 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.++.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 479999999999999999999999999998765
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.69 E-value=0.078 Score=47.44 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
.+|-|||.|..|...|..|+++|++|.++++++..-..+..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~ 45 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEe
Confidence 47999999999999999999999999999998765444443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.65 E-value=0.65 Score=38.45 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+|+|-+|...++.+...|. .|++.++++++.+.+.+.+.
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 469999999999998888888886 67778999999877666553
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.46 E-value=0.091 Score=45.02 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=29.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~ 40 (487)
|||.|||.|..|..+|..|.+. +.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7999999999999999999886 45899998764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.32 E-value=0.21 Score=44.40 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 8 ~kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|+.++
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 356666 46679999999999999999999998654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.26 E-value=0.67 Score=43.69 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=29.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
|||-|.| .|.+|+.+++.|++.||+|+++|--
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl 34 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL 34 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEecC
Confidence 6898886 8999999999999999999999843
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.14 E-value=0.09 Score=48.84 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=29.8
Q ss_pred cEEEEcccHHHHHHHHHHH-----HCCCcEEEEeCChH
Q 011394 9 RIGLAGLAVMGQNLALNIA-----EKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~-----~~G~~V~v~dr~~~ 41 (487)
.|.|||.|..|..+|..|+ ++|++|+++++.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 5999999999999999996 57999999998754
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.99 E-value=0.52 Score=37.34 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=76.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..||-|-|. |.-|+--+..+.+.|-+|..- .+|.+--+ . ..++.++++.+|+++.. .+|.-++.||++.
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgKgG~------~--~~giPVf~tV~eA~~~~-~~daSvIfVPp~~ 84 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGKGGK------T--HLGLPVFNTVKEAKEQT-GATASVIYVPPPF 84 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTC------E--ETTEEEESSHHHHHHHH-CCCEEEECCCHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCCCCc------c--ccCccchhhHHHHHHhc-CCcEEEEecCHHH
Confidence 468999996 999999999999999876633 23332110 0 11477899999998863 4999999999988
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEe
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLG 131 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~ 131 (487)
+.+.+++.+...++ .+|+-+-...+.++.++...+.+. +.++++
T Consensus 85 a~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 85 AAAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 77888877776552 344444455555666665555443 355553
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.061 Score=47.60 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~v 81 (487)
.++|-|.| +|.+|+.++..|.++|+ +|++++|++.+...-..... .... ..+++++.+.++.+|+++.++
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i-----~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV-----NQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC-----EEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee-----eeeeecccccccccccccccccccccc
Confidence 35799996 99999999999999995 89999997654221110000 0111 223445555556688888876
Q ss_pred CC
Q 011394 82 KA 83 (487)
Q Consensus 82 p~ 83 (487)
..
T Consensus 89 ~~ 90 (232)
T d2bkaa1 89 GT 90 (232)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.66 E-value=1.4 Score=38.66 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=31.1
Q ss_pred EEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHH
Q 011394 10 IGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVE 48 (487)
Q Consensus 10 IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~ 48 (487)
+++| |.+-+|.++|+.|+++|++|++.+|+.++. +++.+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~ 44 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVA 44 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH
Confidence 6666 566799999999999999999999986653 44443
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=89.60 E-value=2.8 Score=33.39 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC-----hhHHHHH
Q 011394 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG-----APVDETI 91 (487)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~-----~~v~~vl 91 (487)
.|...++..+.+.|++|.++|.+....+++.. ++. . +|.|++..|.. ..++..+
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~-----------------~~~-~---~d~ii~Gspt~~g~~~~~~~~~l 76 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDRNDVIK-----------------EIL-D---ARAVLVGSPTINNDILPVVSPLL 76 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHH-----------------HHH-H---CSEEEEECCCBTTBCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccchHHHhh-----------------hhh-h---CCeEEEEeecccCCCCHHHHHHH
Confidence 47778888888999999998865433222211 122 2 89999999854 3567777
Q ss_pred HHHhhcccCCCEEEecCC-C-CchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHhcc
Q 011394 92 KTLSAYMEKGDCIIDGGN-E-WYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 92 ~~l~~~l~~g~iiId~st-~-~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~ 169 (487)
+.+...-.++..+.-.+| + .......+.+.+...|...+..|..- +-..-+++..+.++++-+.++.+
T Consensus 77 ~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~----------~~~~P~~~dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 77 DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPT----------VQWVPRGEDLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCE----------EESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEE----------EcccCCHHHHHHHHHHHHHHHHH
Confidence 776654445554333222 2 23445567778888898887554210 00112556677777777777654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.13 Score=47.80 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=31.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDE 45 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~ 45 (487)
|||-|.| +|.+|+.++..|++.|+ +|++.|+.......
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~ 40 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR 40 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhh
Confidence 6899996 89999999999999995 89999987655443
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.45 E-value=0.13 Score=42.67 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~ 40 (487)
+||.|||.|..|..+|..|.+.+. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 489999999999999999999885 789998876
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.40 E-value=0.29 Score=39.90 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=29.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
++|-|||.|.+|..-+..|.++|-+|+++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.31 E-value=0.11 Score=46.71 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011394 12 LAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (487)
Q Consensus 12 iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 90 (487)
|-| .+-+|..+|+.|++.|++|.+.||+.++.+++...... .-. +|+ .+..+++.+
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------~~~---~dv-----~~~~~~~~~ 61 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET---------------YPQ---LKP-----MSEQEPAEL 61 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH---------------CTT---SEE-----CCCCSHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc---------------EEE---ecc-----CCHHHHHHH
Confidence 335 45599999999999999999999998888776543221 001 442 233466777
Q ss_pred HHHHhhcccCCCEEEecC
Q 011394 91 IKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 91 l~~l~~~l~~g~iiId~s 108 (487)
++++.....+=+++|+..
T Consensus 62 ~~~~~~~~G~iDiLVnNA 79 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSND 79 (252)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 776666555556777643
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.29 E-value=0.36 Score=42.87 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=51.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|..+| | .+-+|..+|+.|++.|+ .|++..|+.++++++.+... .. ..++.+=+.+.
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~-----------------~~---~~~~~~Dvs~~ 63 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD-----------------SR---VHVLPLTVTCD 63 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCC-----------------TT---EEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhC-----------------Cc---eEEEEEecCCH
Confidence 44455 4 78899999999999996 57788999988776543210 01 22333334555
Q ss_pred hhHHHHHHHHhhcccC--CCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEK--GDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~--g~iiId~st~ 110 (487)
..++.+++.+...... =+++|+....
T Consensus 64 ~~v~~~~~~i~~~~~~~~idilinnAG~ 91 (250)
T d1yo6a1 64 KSLDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcCcc
Confidence 5677777666554322 3677766543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.29 E-value=0.25 Score=44.30 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.||++||. + ++...+.+.|.++.++||++.. + .......++++.. ||++|++-.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------g-------d~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------G-------DYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------T-------CEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------C-------CCCchHHHHhhhc---CCEEEEEech--hh
Confidence 58999975 4 7778888999999999999742 1 1233345566666 9999998643 56
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
...++.|+.+.++...|+-.+-+.|-.- . +-+.|+.++..
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P----~-lf~~Gv~~lag 219 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAP----V-LFEHGLQELSG 219 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCG----G-GGGTTCSEEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCH----H-HHhcCCceEeE
Confidence 6777888888877776665554443322 1 22468877754
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.23 E-value=0.072 Score=44.59 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH------HHHHhhccCcchhhhHhhhccccccccCCCCchhHHh
Q 011394 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ------NVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDK 260 (487)
Q Consensus 187 ~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~------~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~ 260 (487)
...++-.|...+.+...+.|+..+++..| -+++++. |++-+-.....+++.+. ..+..+..++.
T Consensus 24 ~gl~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~laGlGDli~Tc~s~~sRN~~~G---------~~l~~g~~~~e 93 (160)
T d1n1ea1 24 NGLGMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGLAGLGDLQLTCSSELSRNFTVG---------KKLGKGLPIEE 93 (160)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTSTTTHHHHHHHTTCTTSHHHHHH---------HHHHHTCCHHH
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHhC-CCccceeccccchhheeeeecchhHHHHHH---------HHHhccccHHH
Confidence 33455678889999999999999999999 5655432 22211111111111111 01112234566
Q ss_pred hhhccCCCCchHHHH----HHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCC
Q 011394 261 VLDKTGMKGTGKWTV----QQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSG 314 (487)
Q Consensus 261 i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~ 314 (487)
+.+..+++-+|..++ +.++++++.+|++.+. .+.+...++.+..+..++.-|
T Consensus 94 ~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~v--y~Il~~~~~p~~~i~~Lm~r~ 149 (160)
T d1n1ea1 94 IQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQI--YEIVYKKKNPRDALADLLSCG 149 (160)
T ss_dssp HHHSCCSCCHHHHHHHHHHHHHHHHTCCCHHHHHH--HHHHHSCCCHHHHHHHHTTSC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHcCCCCcHHHHH--HHHHhCcCCHHHHHHHHHCCC
Confidence 677778888887666 4457789999998863 556777777888777776544
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.14 E-value=0.18 Score=47.46 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred cEE-EEc-ccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 9 RIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIg-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
||. |.| +|.+|+.++..|.++||+|++.||...
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 667 556 999999999999999999999998543
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=89.02 E-value=2.9 Score=33.38 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=75.2
Q ss_pred CcEEEE-c-----ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLA-G-----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiI-G-----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.||.|| + +-.|...++..|.+.|++|.++|.+....+.. ..++. ++|.|++..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~-----------------~~~l~----~~d~vi~Gs 61 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQI-----------------MSEIS----DAGAVIVGS 61 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHH-----------------HHHHH----TCSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhh-----------------ccchh----hCCEEEEec
Confidence 466666 2 33577778888888999999998764322211 11222 389999999
Q ss_pred CCC-----hhHHHHHHHHhhcccCCCEEEecCC-C-CchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHH
Q 011394 82 KAG-----APVDETIKTLSAYMEKGDCIIDGGN-E-WYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFE 154 (487)
Q Consensus 82 p~~-----~~v~~vl~~l~~~l~~g~iiId~st-~-~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~ 154 (487)
|.. ..+...++.+...-.++..+.-.++ + .......+.+.+...|+..+..|+.- -..-+++
T Consensus 62 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~~~~-----------~~~p~~~ 130 (152)
T d1e5da1 62 PTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKV-----------KNVPTHA 130 (152)
T ss_dssp CCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEE-----------ESSCCHH
T ss_pred cccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCcEEE-----------ecCCCHH
Confidence 874 3456666655543335554433332 2 33445667778888888766544210 0012455
Q ss_pred HHHHHHHHHHHHhc
Q 011394 155 AYKYIEDILLKVAA 168 (487)
Q Consensus 155 ~~~~v~~ll~~ig~ 168 (487)
..+.++++-+.|+.
T Consensus 131 ~~~~~~e~g~~i~~ 144 (152)
T d1e5da1 131 DYEQLKTMAQTIAR 144 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665553
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.75 E-value=1.2 Score=38.96 Aligned_cols=123 Identities=13% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCcEEEEcccHH--HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVM--GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~m--G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~ 80 (487)
-++|-=+|+|.= -..+|... ..+-.|+++|.++..++.+.+.....+ ++.. ...+..........|+|+..
T Consensus 74 G~~VLDlGaGsG~~t~~la~~V-G~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 74 GKSVLYLGIASGTTASHVSDIV-GWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEE
Confidence 357888876653 34444432 234589999999999888876543221 1211 11222222222347888888
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEec-------CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDG-------GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~-------st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
++...+.+.++..+...|++|-.++-+ ++..|....+..+.+.+.|+..++.
T Consensus 151 ~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 151 VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 887777788888888888887755432 2334444444445555667776654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=0.47 Score=39.56 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=36.4
Q ss_pred CcEEEE-cccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011394 8 TRIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 8 ~kIgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (487)
.+|.|+ |.|.+|....+.....|.+|++.++++++.+.+.+.+.
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 368888 56669988888888889999999999999988776653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.71 E-value=0.98 Score=40.14 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cC-C
Q 011394 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VK-A 83 (487)
Q Consensus 9 kIgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp-~ 83 (487)
|+.+| | .+-+|..+|+.|++.|.+|++.+|+.++.+.+.+.... .. ...+.+.+ +. +
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~---------------~~---~~~~~~~~~d~~~~ 67 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAI---------------NP---KVNITFHTYDVTVP 67 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHH---------------CT---TSEEEEEECCTTSC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhh---------------CC---CCCEEEEEeecCCC
Confidence 34444 5 66799999999999999998887766655444321110 01 12333333 22 2
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...++++++.+.....+=+++|+....
T Consensus 68 ~~~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 68 VAESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 234667777776665555788876654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.65 E-value=0.22 Score=44.00 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEe------
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIML------ 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~------ 80 (487)
.+|-=||+|. ..++..|++.|++|++.|.+++-++.+.++.... +.++.. +.+..++--. +.-|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~-~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNLNIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhcccccccc-Cccceeeccchhhhccc-ccccccceeeeeeec
Confidence 4688888884 2366677889999999999999877765543322 112222 3344433211 235888864
Q ss_pred cCCChhHHHHHHHHhhcccCCC-EEEecC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGD-CIIDGG 108 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~-iiId~s 108 (487)
+++......+++.+...|++|- +|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3444566778889999888765 565554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.08 E-value=0.47 Score=41.65 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=61.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEec----
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLV---- 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~v---- 81 (487)
..+|-=||+|. | .++..|+++|++|++.|.+++-++.+.+..... +.+++ ...+..++--. +..|+|+++-
T Consensus 42 ~~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~-~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccc-cccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 34788899997 4 446678899999999999998887766554322 11222 12333332111 1257777642
Q ss_pred -CCChhHHHHHHHHhhcccCCC-EEEecCC
Q 011394 82 -KAGAPVDETIKTLSAYMEKGD-CIIDGGN 109 (487)
Q Consensus 82 -p~~~~v~~vl~~l~~~l~~g~-iiId~st 109 (487)
.+......+++.+...|+||- ++++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222345677888888887765 5665543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.21 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=29.3
Q ss_pred CcEE-EE-cccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIG-LA-GLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIg-iI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
+||+ |. |.|.+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4786 55 4899999999999999999999998653
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.22 E-value=0.21 Score=45.18 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=30.1
Q ss_pred cEEEEcccHHHHHHHHHHHH-CCCcEEEEeCChH
Q 011394 9 RIGLAGLAVMGQNLALNIAE-KGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~-~G~~V~v~dr~~~ 41 (487)
.|.|||.|.-|...|..|++ .|++|+++|+.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 59999999999999999987 5999999998764
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.65 E-value=5 Score=31.19 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC-------hhHHH
Q 011394 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG-------APVDE 89 (487)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~-------~~v~~ 89 (487)
.+...+|..|.+.|++|.+++.+.. ++.++.+ +|.+++.+|+. ..++.
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~---------------------~~~~l~~----~~~~i~g~pt~~~g~~p~~~~~~ 68 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDV---------------------NIDELLN----EDILILGCSAMTDEVLEESEFEP 68 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGC---------------------CHHHHTT----CSEEEEEECCBTTTBCCTTTHHH
T ss_pred HHHHHHHHHHHhcCCcceecccccc---------------------ccccccc----CCeEEEEEeccCCCCCChHHHHH
Confidence 3556677777777777777765421 3344433 89999988753 23555
Q ss_pred HHHHHhhcccCCCEEEec---CCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 90 TIKTLSAYMEKGDCIIDG---GNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 90 vl~~l~~~l~~g~iiId~---st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
.++.+.+.+ +|+.+.-. +.........+.+.+...|...+..|+. +-+.+.+..+.++++-+.|
T Consensus 69 ~~~~~~~~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~~------------~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 69 FIEEISTKI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLI------------VQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp HHHHHGGGC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCEE------------EESSCGGGHHHHHHHHHHH
T ss_pred HHHHhCccC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcEE------------ECCCCcHHHHHHHHHHHHH
Confidence 666655544 44433222 2222233455667788888876654421 1122445666777766666
Q ss_pred h
Q 011394 167 A 167 (487)
Q Consensus 167 g 167 (487)
+
T Consensus 136 A 136 (138)
T d5nula_ 136 A 136 (138)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.42 E-value=2 Score=34.25 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCcEEEE-c--cc---HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLA-G--LA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiI-G--lG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
..||.|| | .| .|...|+..|.+.|++|.+++.+... ..++.+....+.++|.|++.
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~------------------~~~~~~~~~~l~~~d~iiig 64 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE------------------RPAISEILKDIPDSEALIFG 64 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC------------------CCCHHHHHHHSTTCSEEEEE
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc------------------ccchhHhhhhHHHCCEeEEE
Confidence 3467776 3 33 57788888888999999998765321 23444455556669999999
Q ss_pred cCCC-----hhHHHHHHHHhhcccCCCEEEecCC-CC-chhHHHHHHHHHHcCCeEEec
Q 011394 81 VKAG-----APVDETIKTLSAYMEKGDCIIDGGN-EW-YENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 81 vp~~-----~~v~~vl~~l~~~l~~g~iiId~st-~~-~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.|.. ..+...+..+.+.-.+|+.+.-.+| .. ......+.+.+...|..+++.
T Consensus 65 spt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~~ 123 (148)
T d1vmea1 65 VSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF 123 (148)
T ss_dssp ECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEE
T ss_pred ecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEee
Confidence 9853 2455666666554345654333322 22 223445677788888877643
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.39 E-value=0.23 Score=40.78 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=27.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.||.|||.|..|.-+|..|++ +.+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 389999999999999999865 78999998754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=86.37 E-value=0.16 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (487)
.||||-|.| .|-+|+.|+..|.++|++|.++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 478999997 999999999999999998666543
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.37 E-value=4.1 Score=33.17 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=47.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC-----ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR-----TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-----~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.||++|| ..++..+++..+..-|.+|+++.+ .++-.+.+.+..... ...+..+.+++++++. +|+|.+-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ea~~~---adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELLHDPVKAVKD---ADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcc-cceEEEecCHHHHhhh---ccEEeecc
Confidence 3799999 456778888888889999998864 333333333322111 1135678899998887 99888754
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.21 E-value=1.2 Score=39.16 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHH---HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--
Q 011394 7 LTRIGLAG-LAVMGQNLALNIA---EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML-- 80 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~---~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~-- 80 (487)
|++|-|.| ..-+|..+|+.|+ +.|+.|++.+|++++++++.+... .. .++.++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~~~D 61 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-----------------NH---SNIHILEID 61 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH-----------------HC---TTEEEEECC
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-----------------cC---CcEEEEEEE
Confidence 45687777 5779999999886 579999999999988766543211 01 2333333
Q ss_pred cCCChhHHHHHHHHhhcc--cCCCEEEecCC
Q 011394 81 VKAGAPVDETIKTLSAYM--EKGDCIIDGGN 109 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l--~~g~iiId~st 109 (487)
+.+...++.+++.+.... .+=+++|+...
T Consensus 62 vs~~~~v~~~~~~i~~~~~~~~iDiLvnNAg 92 (248)
T d1snya_ 62 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAG 92 (248)
T ss_dssp TTCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred eccHHHHHHHHhhhHHHhhcCCcceEEeecc
Confidence 445567777777664322 23367776544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.15 E-value=0.23 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.6
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
|+++| |.+-+|..+|+.|++.|++|.+.||+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 56667 57899999999999999999999998653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.96 E-value=1.2 Score=37.63 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=50.4
Q ss_pred CcEEEEc-c-cHHHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-L-AVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-l-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.||++|| + -++..+++..++.-|.+|.++.+. ++-++.+.+..... +..+..+.+++++++. +|+|...
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~eai~~---aDvVyt~ 81 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTLTEDPKEAVKG---VDFVHTD 81 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEEC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEEEeChhhcccc---ccEEEee
Confidence 5899999 4 589999999999999999998763 33333333211111 1146778899999887 9998876
Q ss_pred c
Q 011394 81 V 81 (487)
Q Consensus 81 v 81 (487)
+
T Consensus 82 ~ 82 (185)
T d1dxha2 82 V 82 (185)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.95 E-value=0.25 Score=47.97 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (487)
+||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899998764
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=85.76 E-value=0.32 Score=41.82 Aligned_cols=31 Identities=13% Similarity=-0.084 Sum_probs=29.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
.|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 4889999999999999999999999999986
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.61 E-value=0.76 Score=38.56 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=66.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc--CCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI--QKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l--~~advIi~~vp~~ 84 (487)
.+|-|.| .|-+|....+.....|.+|+...+++++.+.+.+.+... -+......++....+ +..|+||-++...
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR 109 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence 3588887 799999888888889999999999999988877665431 111112223333222 2478888888644
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. ++..+..+.++-.++.++........-....+--+++.+++.
T Consensus 110 -~----~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv 152 (176)
T d1xa0a2 110 -T----LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI 152 (176)
T ss_dssp -T----HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred -h----HHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence 3 333445555666666665443222111112223445666553
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.58 E-value=0.38 Score=39.68 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH------HHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhcc-
Q 011394 193 HNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ------NVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT- 265 (487)
Q Consensus 193 ~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~------~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~- 265 (487)
.|...+.+...+.|+..+++..| -+++++. |++-+. ...+++.+- ..+. .+..++.+.+..
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~~aGiGDLi~Tc--~~sRN~~~G---~~l~------~G~~~~e~~~~~~ 101 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILG-GDRETAFGLSGFGDLIATF--RGGRNGMLG---ELLG------KGLSIDEAMEELE 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SCGGGGGSTTTHHHHHHTT--TCHHHHHHH---HHHH------TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHhhc-ccchhhcccchhhhHHhhc--CCCCccHHH---HHHh------hhhhHHHHHHHhc
Confidence 58888889999999999999999 6777543 232111 011111111 1111 122333443332
Q ss_pred ---CCCCchHHHHH----HHHHcCCCchhHHHHHHHHHhhccchHHHHHHHh
Q 011394 266 ---GMKGTGKWTVQ----QAADLSVAAPTIASSLDARFLSGLKEERVEAAKV 310 (487)
Q Consensus 266 ---~~kgtg~~~~~----~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~ 310 (487)
.+.-+|..++. .++++++.+|++.+. .+.+...++.......+
T Consensus 102 ~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~v--y~Il~~~~~~~~~i~~L 151 (155)
T d1txga1 102 RRGVGVVEGYKTAEKAYRLSSKINADTKLLDSI--YRVLYEGLKVEEVLFEL 151 (155)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHH--HHHHHSCCCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCcHHHHH--HHHHhCcCCHHHHHHHH
Confidence 22445766554 567889999998863 34444444444444443
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.50 E-value=0.37 Score=44.67 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=28.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (487)
+||-|.| .|.+|+.|+..|++.||+|++.|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 4798886 999999999999999999999975
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.36 E-value=0.34 Score=41.90 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.|.|||.|.-|..-|..+++.|.+|.++++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999999999999999999999999997643
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.20 E-value=0.38 Score=44.13 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
+||-|.| .|.+|+.++..|.++||+|+++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5898996 8999999999999999999999863
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=85.00 E-value=1.8 Score=37.51 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=60.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC--------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--------~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
..||-|+|+|..|..+|..|.+.+. +++++|+. ....++........ ........++.+++.. ++++
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~g---~~~~ 101 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI-TNPERLSGDLETALEG---ADFF 101 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCTTCCCSCHHHHHTT---CSEE
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhh-hcchhhhcchHhhccC---ccee
Confidence 3589999999999999999998886 78888875 11122221111110 0012234566777665 7776
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+..-..+.... +....+.+..+|.-.||..+..
T Consensus 102 ~g~~~~~~~~~----e~m~~~~~rPIIFpLSNPt~~~ 134 (222)
T d1vl6a1 102 IGVSRGNILKP----EWIKKMSRKPVIFALANPVPEI 134 (222)
T ss_dssp EECSCSSCSCH----HHHTTSCSSCEEEECCSSSCSS
T ss_pred ccccccccccH----HHHhhcCCCCEEEecCCCccch
Confidence 66554332222 2334456788999999877543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=84.52 E-value=0.52 Score=42.52 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCcEEEEcccHH--HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC-Cccc-cCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVM--GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-PLFG-FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~m--G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-~~~~-~~s~~e~~~~l~~advIi~~vp 82 (487)
-++|-=+|+|.= ...+|+.+. .+-+|+.+|.+++.++.+.+.....+-. ++.. ..+..+... ....|.|++-+|
T Consensus 104 G~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~D~V~~d~p 181 (266)
T d1o54a_ 104 GDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-EKDVDALFLDVP 181 (266)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-CCSEEEEEECCS
T ss_pred CCEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc-ccceeeeEecCC
Confidence 357777876663 334433322 3458999999999887776554322100 1111 112221111 124799999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
++. .+++.+...|+||-.++..+.. ....++..+.+++.|+.
T Consensus 182 ~p~---~~l~~~~~~LKpGG~lv~~~P~-~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 182 DPW---NYIDKCWEALKGGGRFATVCPT-TNQVQETLKKLQELPFI 223 (266)
T ss_dssp CGG---GTHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHHSSEE
T ss_pred CHH---HHHHHHHhhcCCCCEEEEEeCc-ccHHHHHHHHHHHCCce
Confidence 764 3466667777777665543322 24455666777777743
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.48 E-value=0.93 Score=38.65 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=59.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecC----
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVK---- 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp---- 82 (487)
.+|-=||+|.= .++..|++.|++|++.|.+++.++.+.+.....+ ..+. ...+..++...-..-|+|+..--
T Consensus 39 ~~ILDiGcG~G--~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVG--GFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTS--HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcc--hhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC
Confidence 47888999873 3566788899999999999998877665432211 1111 22233332211122577766421
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEecCC
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDGGN 109 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~st 109 (487)
++.....+++.+...|.||- ++|...+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 11245667888888888875 5555543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.36 E-value=0.4 Score=43.59 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
-.|.|||.|.-|...|..|+++|.+|++.++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999875
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=84.27 E-value=1.4 Score=37.57 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---cEEEEeCChHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVD 44 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~ 44 (487)
+||-|||.|--|.+++.+|.+.|. +....|.+.+.++
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence 589999999999999999998775 5567788776654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.75 E-value=0.48 Score=41.14 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48899999999999999999999999999765
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.72 E-value=0.37 Score=37.47 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.0
Q ss_pred CcEEEEcccHHHHHHHHHHH---HCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIA---EKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~---~~G~~V~v~dr~~ 40 (487)
.+|.|||.|.+|.-+|..|. .+|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 48999999999999996555 4566899998754
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.69 E-value=0.92 Score=35.04 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=33.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
|.+..+||+...+..+..+++.|++..+++.| +..+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~G-v~~~ 36 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED 36 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHH
Confidence 67889999999999999999999999999999 7644
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.64 E-value=0.35 Score=40.14 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=28.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 579999999999999999999999887765443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=83.56 E-value=0.41 Score=42.78 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=66.0
Q ss_pred CcEEEEcccHH--HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVM--GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~m--G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~~~~-~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|-=+|+|.= ...||+.+.. +-.|+.+|++++.++.+.+.....+. .++.. ..+..+.... ...|.|++-+|+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-~~fD~V~ld~p~ 164 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-QMYDAVIADIPD 164 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS-CCEEEEEECCSC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc-ceeeeeeecCCc
Confidence 57888876654 4445544433 34899999999988877665432110 02221 1223332211 237999998887
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+. .+++.+...|++|-.++..+.. ....++..+.+++.|+
T Consensus 165 p~---~~l~~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 165 PW---NHVQKIASMMKPGSVATFYLPN-FDQSEKTVLSLSASGM 204 (250)
T ss_dssp GG---GSHHHHHHTEEEEEEEEEEESS-HHHHHHHHHHSGGGTE
T ss_pred hH---HHHHHHHHhcCCCceEEEEeCC-cChHHHHHHHHHHCCC
Confidence 64 3566677778888777653322 2344555566666664
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.45 E-value=0.42 Score=40.46 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 479999999999999999999999999998653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=83.32 E-value=0.43 Score=40.93 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.-|...|..+++.|.+|.++++.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 68999999999999999999999999999764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.95 E-value=0.57 Score=37.12 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCCCCCCCcEEEEccc-----------HHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 1 MVEGKQLTRIGLAGLA-----------VMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
|-+....+||-|||.| +.+...++.|.+.|+++.+.|.||+.+
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV 54 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI 54 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence 5566677899999987 578888999999999999999998853
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.80 E-value=0.54 Score=43.13 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.4
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|+.+| |.|.+|..++..|.++||+|+++||..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 44444 599999999999999999999999854
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.76 E-value=0.49 Score=39.58 Aligned_cols=30 Identities=17% Similarity=0.527 Sum_probs=27.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYN 37 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~d 37 (487)
|||||=|+|++|+.+.+.|.+.+++|...|
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 689999999999999999999999998886
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=82.42 E-value=0.53 Score=36.40 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=28.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH---CCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~---~G~~V~v~dr~~ 40 (487)
.+|.|||.|..|.-+|..|.+ .|.+|+++.+.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 589999999999999977654 488999998764
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=82.41 E-value=2 Score=34.99 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=49.3
Q ss_pred CcEEEEc-c-cHHHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-L-AVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-l-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
.||++|| + .++-.++...+..-|++++++.+. ++..+...+..... +..+..+++++++++. +|+|.+-
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~-~~~i~~~~d~~~ai~~---aDviyt~ 79 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKET-DGSVSFTSNLEEALAG---ADVVYTD 79 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHH-CCEEEEESCHHHHHTT---CSEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhc-CCceEEEecHHHhhhh---hhheecc
Confidence 3799999 4 689999999999999999988653 22222221111100 1146788899999987 9999986
Q ss_pred cC
Q 011394 81 VK 82 (487)
Q Consensus 81 vp 82 (487)
.-
T Consensus 80 ~~ 81 (161)
T d1vlva2 80 VW 81 (161)
T ss_dssp CC
T ss_pred ce
Confidence 53
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.39 E-value=0.43 Score=41.67 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=36.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (487)
....+|-.+|+|. | ..+..|++.|++|+++|.+++.++.+.++.
T Consensus 44 ~~~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 44 KSGLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CCSCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 3446899999998 3 668889999999999999999998877654
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=82.35 E-value=8.2 Score=29.85 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC------h-hHHH
Q 011394 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG------A-PVDE 89 (487)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~------~-~v~~ 89 (487)
.|...++..|.+.|++|.++|.+. .+++++.+ +|.|++..|+. . ..+.
T Consensus 15 ~~A~~ia~~l~~~g~~v~~~~~~~---------------------~~~~~l~~----~d~ii~g~pT~~~g~~p~~~~~~ 69 (137)
T d2fz5a1 15 AMANEIEAAVKAAGADVESVRFED---------------------TNVDDVAS----KDVILLGCPAMGSEELEDSVVEP 69 (137)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTS---------------------CCHHHHHT----CSEEEEECCCBTTTBCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEeehhh---------------------HHHhhhhc----cceEEEEEecccCCcCChhHHHH
Confidence 466677777878888888877542 13445444 89999988752 1 2344
Q ss_pred HHHHHhhcccCCC-EEEec--CCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 90 TIKTLSAYMEKGD-CIIDG--GNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 90 vl~~l~~~l~~g~-iiId~--st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
.++.+.+.+ +|+ +.+-. +.........+.+.++..|...+..++.
T Consensus 70 ~~~~~~~~~-~gk~~~~fgs~g~~~~~a~~~l~~~l~~~G~~~v~~~~~ 117 (137)
T d2fz5a1 70 FFTDLAPKL-KGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIGTAIV 117 (137)
T ss_dssp HHHHHGGGC-SSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHhcccc-CCCeEEEEEecCCCcCHHHHHHHHHHHHCCCEEeeceee
Confidence 445555444 344 32222 2233344556677888899988876653
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=82.28 E-value=1.6 Score=33.95 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHH
Q 011394 200 DMQLIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQ 277 (487)
Q Consensus 200 ~~~~~~Ea~~l~~~~g~i~--~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~ 277 (487)
..+++.|+..+++..| ++ .+...+.+......... ...++..++.+.+. ..+|.+.. +.++.
T Consensus 37 ~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~ 100 (124)
T d1ks9a1 37 IMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRH-----TEIDYING---------FLLRR 100 (124)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCc-----chHHHHHH---------HHHHH
Confidence 5678899999999988 66 44444443322121111 11223334433321 24666654 58999
Q ss_pred HHHcCCCchhHHHH
Q 011394 278 AADLSVAAPTIASS 291 (487)
Q Consensus 278 a~~~gv~~P~~~~a 291 (487)
|+++|+|+|+....
T Consensus 101 a~~~gi~tP~~~~l 114 (124)
T d1ks9a1 101 ARAHGIAVPENTRL 114 (124)
T ss_dssp HHHHTCCCHHHHHH
T ss_pred HHHhCCCCcHHHHH
Confidence 99999999997753
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.15 E-value=0.61 Score=42.43 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=28.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
+|-|.| +|.+|+.++..|.++||+|++.||...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 566775 899999999999999999999998643
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.14 E-value=1 Score=41.40 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=27.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (487)
++|-|.| .|.+|+.++..|.+.||+|.+.|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4566665 999999999999999999999986
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=81.80 E-value=0.56 Score=42.97 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
..|.|||.|.-|...|..|+++|++|.+.++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999865
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.56 E-value=0.6 Score=37.97 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 14 GLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 14 GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|.|.+|..+|..|++.|.+|++..+.+.
T Consensus 48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 48 DTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 9999999999999999999999998764
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.47 E-value=0.52 Score=36.22 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=47.6
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
++|||+|+ ..-...+...|.+.|..|.+||+.-...+ .. .+.....++.++.+. +|+|
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-----~~----~~~~~~~~l~~~~~~---sDiI 83 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-----SE----DQSVLVNDLENFKKQ---ANII 83 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-----TT----CCSEECCCHHHHHHH---CSEE
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-----hc----cCCEEEeCHHHHHhh---CCEE
Confidence 47999998 45678899999999999999998754311 00 135567899999888 9977
Q ss_pred EEecCC
Q 011394 78 IMLVKA 83 (487)
Q Consensus 78 i~~vp~ 83 (487)
|+...+
T Consensus 84 I~~~~~ 89 (108)
T d1dlja3 84 VTNRYD 89 (108)
T ss_dssp ECSSCC
T ss_pred EEcCCc
Confidence 765544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.34 E-value=1.6 Score=36.34 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=58.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCC-HHHHHhh--cCCCcEEEEecC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRD-PESFVNS--IQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s-~~e~~~~--l~~advIi~~vp 82 (487)
.+|-|.|. |.+|...++.....|.+|++..+++++.+.+.+.+... -+.. ..+ .+++.+. -...|+||-++.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~---vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA---AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE---EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh---hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 36778776 67888888877888999999999999988877765421 0111 111 2222211 134788888874
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
. + .++...+.+.++-.++..+.
T Consensus 108 ~-~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-H----HHHHHGGGEEEEEEEEECCC
T ss_pred c-h----hhhhhhhhccCCCeEEeecc
Confidence 2 2 34455666666666666553
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.06 E-value=1.4 Score=40.59 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=31.9
Q ss_pred CcEEEE-ccc---HHHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 8 TRIGLA-GLA---VMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 8 ~kIgiI-GlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
-||++| |.| -+|.++|+.|++.|.+|.+.+++.......
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~ 44 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFM 44 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhh
Confidence 378887 765 599999999999999999999887654443
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.00 E-value=0.28 Score=41.10 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=25.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYN 37 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~d 37 (487)
.+|.|||.|..|..+|..|.+.|++|.+..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 479999999999999999999998665543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=80.91 E-value=0.6 Score=43.23 Aligned_cols=30 Identities=13% Similarity=0.417 Sum_probs=28.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNR 38 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr 38 (487)
.|-|||.|.-|..+|.+|+++|++|.+.++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 588999999999999999999999999975
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=80.86 E-value=0.55 Score=39.43 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=30.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.+|.|||.|..|..-|..+++.|.+|+++++.+
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 479999999999999999999999999998753
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.49 E-value=0.56 Score=40.64 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=29.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
.|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 47899999999999999999999999998653
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.24 E-value=6.2 Score=32.81 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCcEEEE---c---ccHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLA---G---LAVMGQNLALNIAE-KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiI---G---lG~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+||.|| . +-.|...++..+.+ .|.+|.+++... .+++++.+ +|.|++
T Consensus 1 M~kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~---------------------~~~~dl~~----~d~iii 55 (184)
T d2arka1 1 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE---------------------ATKEDVLW----ADGLAV 55 (184)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT---------------------CCHHHHHH----CSEEEE
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeeccc---------------------ccccchhh----CcEEEE
Confidence 4566666 1 33466667776666 577888877542 13455554 899999
Q ss_pred ecCCC-----hhHHHHHHHHhhcc---cCCCEE---EecCCCCc--h-hHHHHHHHHHHcCCeEEecC
Q 011394 80 LVKAG-----APVDETIKTLSAYM---EKGDCI---IDGGNEWY--E-NTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 80 ~vp~~-----~~v~~vl~~l~~~l---~~g~ii---Id~st~~~--~-~~~~~~~~l~~~g~~~i~~p 133 (487)
..|.. ..++..++.+...+ -.|++. ...++..- . ....+...+...|..+++.+
T Consensus 56 GsPty~g~~~~~~~~fld~~~~~~~~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vvg~~ 123 (184)
T d2arka1 56 GSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVT 123 (184)
T ss_dssp EEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEE
T ss_pred ecCccccccCHHHHHHHHHHHHHHHHHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEeccc
Confidence 99873 35666676654321 145543 22222111 1 23445666778888877543
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=80.15 E-value=0.62 Score=40.03 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=30.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
.+|-|||.|..|...|..+++.|.+|.+.+++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 47999999999999999999999999999976
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=80.03 E-value=0.77 Score=37.95 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (487)
.|.|||.|..|...|..+++.|.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4789999999999999999999999999864
|