Citrus Sinensis ID: 011400
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IYT4 | 538 | Katanin p60 ATPase-contai | yes | no | 0.644 | 0.583 | 0.583 | 1e-100 | |
| A0JMA9 | 542 | Katanin p60 ATPase-contai | yes | no | 0.644 | 0.579 | 0.580 | 2e-99 | |
| Q9D3R6 | 539 | Katanin p60 ATPase-contai | yes | no | 0.632 | 0.571 | 0.583 | 5e-99 | |
| Q3B8D5 | 505 | Katanin p60 ATPase-contai | N/A | no | 0.566 | 0.546 | 0.504 | 5e-78 | |
| Q5RII9 | 485 | Katanin p60 ATPase-contai | no | no | 0.616 | 0.618 | 0.491 | 3e-77 | |
| Q5XIK7 | 488 | Katanin p60 ATPase-contai | no | no | 0.624 | 0.622 | 0.480 | 3e-76 | |
| Q0IIR9 | 492 | Katanin p60 ATPase-contai | no | no | 0.601 | 0.595 | 0.486 | 5e-76 | |
| Q9SEX2 | 523 | Katanin p60 ATPase-contai | no | no | 0.599 | 0.558 | 0.468 | 6e-76 | |
| Q8K0T4 | 488 | Katanin p60 ATPase-contai | yes | no | 0.673 | 0.672 | 0.448 | 8e-76 | |
| Q9BW62 | 490 | Katanin p60 ATPase-contai | no | no | 0.624 | 0.620 | 0.480 | 9e-76 |
| >sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 239/322 (74%), Gaps = 8/322 (2%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 462 NTRPSAHLHAHRYEKFNADYGS 483
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3 |
| >sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/322 (58%), Positives = 238/322 (73%), Gaps = 8/322 (2%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVF 399
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y
Sbjct: 400 VLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYST 459
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
L T+GYSGSDIRLV KEAAM+P+R++ LE + + + + D L
Sbjct: 460 LGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLA 519
Query: 462 NTRPSAHLHAHRYEKFNADYGS 483
+T+PSA A +Y + ++ S
Sbjct: 520 HTKPSAKSLAEKYAAWQKEFES 541
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/324 (58%), Positives = 241/324 (74%), Gaps = 16/324 (4%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 460 LKNTRPSAHLHAHRY----EKFNA 479
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 208/323 (64%), Gaps = 47/323 (14%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348
+VLFELAR+HAPSTIFLDE+++++SQRG
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTG------------------------------ 369
Query: 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDLL 402
P ELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y L
Sbjct: 370 ------PGELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTL 423
Query: 403 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG--PIRPEDVEIAL 460
E T+GYSGSDIRLV KEAAM+P+R++ LE + +LP I + D L
Sbjct: 424 GEETDGYSGSDIRLVCKEAAMRPVRKIFDALENHH--SEHKKLPVISLETVTTSDFSEVL 481
Query: 461 KNTRPSAHLHAHRYEKFNADYGS 483
+T+PSA A +Y + ++ S
Sbjct: 482 AHTKPSAKSLAEKYSAWQNEFES 504
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 214/311 (68%), Gaps = 11/311 (3%)
Query: 181 FD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 239
FD E + L ++L RDII +P+V W+ I LE AK+LLKEAVV+P+ P++F G+ P
Sbjct: 177 FDRGGEDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRP 236
Query: 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA 299
WKG+L+ GPPGTGKT+LAKAVATEC+TTFFN+S+S++ SK+RG+SEKL+++LFE+AR +A
Sbjct: 237 WKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 296
Query: 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-----LVFVLAATNL 354
P+TIF+DEID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN
Sbjct: 297 PTTIFIDEIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNF 355
Query: 355 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414
PW++D A+ RRLEKRI +PLP + R + + L + D + E+ EGYSG+DI
Sbjct: 356 PWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADI 415
Query: 415 RLVSKEAAMQPLRRLMVLLEGRQ-EVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAH 472
V ++A++ +RR + L + P DE+ P ED E ALK S +
Sbjct: 416 TNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM--PTTMEDFETALKKVSKSVSAADLE 473
Query: 473 RYEKFNADYGS 483
+YEK+ A++GS
Sbjct: 474 KYEKWIAEFGS 484
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 219/314 (69%), Gaps = 10/314 (3%)
Query: 178 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235
Query: 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 296
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295
Query: 297 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---QSDE---LVFVLA 350
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ ++D+ +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354
Query: 351 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYS 414
Query: 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 469
G+DI + ++A++ +RR + L + A E Q+ P+ D+E+ALK S +
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473
Query: 470 HAHRYEKFNADYGS 483
+YEK+ ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 211/306 (68%), Gaps = 13/306 (4%)
Query: 187 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 246
+ L E+L RDII +P+++W+ I LE AK+LLKEAVV+P+ P++F G+ PWKG+L+
Sbjct: 190 KDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMV 249
Query: 247 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 306
GPPGTGKT+LAKAVATECKTTFFNIS+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+D
Sbjct: 250 GPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309
Query: 307 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLAATNLPWELDA 360
EID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN PW++D
Sbjct: 310 EIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDE 368
Query: 361 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKE 420
A+ RRLEKRI +PLP + R + L + + + + E +GYSG+DI V ++
Sbjct: 369 ALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRD 428
Query: 421 AAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKF 477
A++ +RR + L E + ++ DD P ED E+ALK S +YEK+
Sbjct: 429 ASLMAMRRRIEGLTPEEIRNLSRDD---MHMPTTMEDFEMALKKVSKSVSASDIEKYEKW 485
Query: 478 NADYGS 483
++GS
Sbjct: 486 IEEFGS 491
|
Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 214/305 (70%), Gaps = 13/305 (4%)
Query: 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 248
LA L RD++ +P V+W+ + GL AKRLL+EAVV+P+ P+YF G+ PWKG+L+FGP
Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 280
Query: 249 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 308
PGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++++ LF+LAR +APSTIF+DEI
Sbjct: 281 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 340
Query: 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWELDAA 361
D++ + RG EHE+SRR+K+ELL+Q+DG++ S ++V VLAATN PW++D A
Sbjct: 341 DSLCNSRG-GSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEA 399
Query: 362 MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 421
+ RRLEKRI +PLPD E+R+A+ L + + + + RTEGYSG D+ V ++A
Sbjct: 400 LRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDA 459
Query: 422 AMQPLRRLMVLLEGRQEVA--PDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFN 478
+M +RR + + R E+ D++ P+ D E A++ +PS + ++EK+
Sbjct: 460 SMNGMRR-KIAGKTRDEIKNMSKDDISN-DPVAMCDFEEAIRKVQPSVSSSDIEKHEKWL 517
Query: 479 ADYGS 483
+++GS
Sbjct: 518 SEFGS 522
|
Severs microtubules in an ATP-dependent manner. May be required for reorientation of cortical microtubule arrays during cellular elongation. Failure to correctly orient these arrays drastically compromises fiber length, cell wall thickness and mechanical strength. May also be required for the spatial organization of developmental cues within the root. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 226/343 (65%), Gaps = 15/343 (4%)
Query: 149 EQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-TRALAESLCRDIIRGSPDVKWE 207
+ YR +G V + + P FD A + L E+L RDI+ +P + W+
Sbjct: 152 KDYRARGRDDKARKNVQDGASDSEI-----PKFDGAGYDKDLVEALERDIVSRNPSIHWD 206
Query: 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267
I LE AK+LL+EAVV+P+ P +F G+ PWKG+L+ GPPGTGKTMLAKAVATEC TT
Sbjct: 207 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 266
Query: 268 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRR 327
FFN+S+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+DEID+I S+RG + EHEASRR
Sbjct: 267 FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTS-DEHEASRR 325
Query: 328 LKTELLIQMDGLT---QSDE---LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 381
+K+ELLIQMDG+ ++D+ +V VLAATN PW++D A+ RRLEKRI +PLP + R
Sbjct: 326 VKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385
Query: 382 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP 441
+ + L + + + + ++TEGYSG+DI + ++A++ +RR + L + A
Sbjct: 386 ELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRAL 445
Query: 442 DDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 483
E Q+ P+ D+E+ALK S + +YEK+ ++GS
Sbjct: 446 SKEELQM-PVTRGDLELALKKIAKSVSAADLEKYEKWMVEFGS 487
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 215/314 (68%), Gaps = 10/314 (3%)
Query: 178 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 178 MPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 237
Query: 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 296
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 238 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 297
Query: 297 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 350
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ + E +V VLA
Sbjct: 298 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 356
Query: 351 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+ EGYS
Sbjct: 357 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 416
Query: 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 469
G+DI V ++A++ +RR + L + A E Q+ P+ D E+ALK S +
Sbjct: 417 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTKGDFELALKKIAKSVSAA 475
Query: 470 HAHRYEKFNADYGS 483
+YEK+ ++GS
Sbjct: 476 DLEKYEKWMVEFGS 489
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 255557305 | 408 | Katanin p60 ATPase-containing subunit, p | 0.802 | 0.958 | 0.799 | 0.0 | |
| 297740706 | 397 | unnamed protein product [Vitis vinifera] | 0.800 | 0.982 | 0.802 | 0.0 | |
| 359483871 | 406 | PREDICTED: katanin p60 ATPase-containing | 0.800 | 0.960 | 0.784 | 0.0 | |
| 388503432 | 404 | unknown [Lotus japonicus] | 0.800 | 0.965 | 0.775 | 1e-179 | |
| 356512187 | 403 | PREDICTED: katanin p60 ATPase-containing | 0.800 | 0.967 | 0.767 | 1e-177 | |
| 356524963 | 405 | PREDICTED: katanin p60 ATPase-containing | 0.800 | 0.962 | 0.761 | 1e-176 | |
| 224078976 | 384 | predicted protein [Populus trichocarpa] | 0.757 | 0.960 | 0.773 | 1e-174 | |
| 357476445 | 402 | Katanin p60 ATPase-containing subunit A- | 0.804 | 0.975 | 0.743 | 1e-170 | |
| 224113079 | 314 | predicted protein [Populus trichocarpa] | 0.644 | 1.0 | 0.894 | 1e-163 | |
| 222619270 | 406 | hypothetical protein OsJ_03507 [Oryza sa | 0.767 | 0.921 | 0.759 | 1e-162 |
| >gi|255557305|ref|XP_002519683.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] gi|223541100|gb|EEF42656.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/409 (79%), Positives = 354/409 (86%), Gaps = 18/409 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDG--------SSLNSNGH 138
MADEP TRW+FQ FGRKK+ E + G + V++G ++ N NGH
Sbjct: 1 MADEPSVTRWSFQDFKLFYDAKFGRKKMSETQNG-VAGPAVANGIGNSSTSNATSNGNGH 59
Query: 139 VQNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 198
V+NTSDMA+YEQYR Q S NGVL N I++R QK LLP FDSAETRALAE LCRDI+
Sbjct: 60 VKNTSDMAIYEQYRNQDRSSNHSNGVLPNGIDDRPQKSLLPAFDSAETRALAEGLCRDIV 119
Query: 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 258
RG+PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 120 RGNPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 179
Query: 259 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 318
AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF+DEIDAIISQRGE
Sbjct: 180 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRGEG 239
Query: 319 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 378
RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ E
Sbjct: 240 RSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPE 299
Query: 379 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438
ARRAM+E LLP Q E+ LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRRLM LLE RQE
Sbjct: 300 ARRAMYEELLPPQPDEDKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRLMALLEDRQE 359
Query: 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
V PDDELP++GPI PED+E ALKNTRPSAHLHAHRYEKFNADYGS+ILQ
Sbjct: 360 VVPDDELPKVGPITPEDIETALKNTRPSAHLHAHRYEKFNADYGSQILQ 408
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740706|emb|CBI30888.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/399 (80%), Positives = 354/399 (88%), Gaps = 9/399 (2%)
Query: 96 MADEPMPTRWTFQFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHVQNTSDMAVY 148
MADEP TRW+FQFGRKK EPEK + E +PVS+G+S N GHV+NTSD+A+Y
Sbjct: 1 MADEPFLTRWSFQFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHVKNTSDLAIY 58
Query: 149 EQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWES 208
EQYRTQ GS NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDIIRGSPDVKW+S
Sbjct: 59 EQYRTQERGSANGNGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIRGSPDVKWDS 118
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268
IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF
Sbjct: 119 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 178
Query: 269 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL 328
FNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE RSEHEASRRL
Sbjct: 179 FNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGRSEHEASRRL 238
Query: 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388
KTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAMFE LL
Sbjct: 239 KTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELL 298
Query: 389 PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQI 448
PS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE + EV P++ELP++
Sbjct: 299 PSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEVVPEEELPKV 358
Query: 449 GPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 359 GPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483871|ref|XP_002276286.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/408 (78%), Positives = 354/408 (86%), Gaps = 18/408 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 139
MADEP TRW+FQ FGRKK EPEK + E +PVS+G+S N GHV
Sbjct: 1 MADEPFLTRWSFQDFKMFYDVKFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 58
Query: 140 QNTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIR 199
+NTSD+A+YEQYRTQ GS NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDIIR
Sbjct: 59 KNTSDLAIYEQYRTQERGSANGNGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIR 118
Query: 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 259
GSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA
Sbjct: 119 GSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 178
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE R
Sbjct: 179 VATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGR 238
Query: 320 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 379
SEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EA
Sbjct: 239 SEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 298
Query: 380 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 439
RRAMFE LLPS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE + EV
Sbjct: 299 RRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEV 358
Query: 440 APDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 359 VPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503432|gb|AFK39782.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 315/406 (77%), Positives = 349/406 (85%), Gaps = 16/406 (3%)
Query: 96 MADE-PMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSL----NSNGHVQN 141
MADE PMPTRW+FQ FGRKK+ + GE ++ V +GSS+ N N H +
Sbjct: 1 MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQ--NGENADKAVGNGSSMSVVSNGNVHSKR 58
Query: 142 TSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGS 201
+SDMA+YEQ R+QG N V N ++ER QK LLP F+SAE R LAESL RDIIRGS
Sbjct: 59 SSDMAIYEQLRSQGQNGIHTNDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGS 118
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 261
PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA
Sbjct: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 178
Query: 262 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321
TECKTTFFNISASSVVSKWRGDSEKL+KVLF+LARHHAPSTIFLDEIDAIISQRGEARSE
Sbjct: 179 TECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSE 238
Query: 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 381
HEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR
Sbjct: 239 HEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARV 298
Query: 382 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP 441
AMFE LLP Q EES+PYDLLV +TEGYSGSDIRL+ KE AMQPLRRLM LE R+++ P
Sbjct: 299 AMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDLVP 358
Query: 442 DDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
++ELP++GPIRPED++ ALKNTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 EEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ 404
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512187|ref|XP_003524802.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/405 (76%), Positives = 349/405 (86%), Gaps = 15/405 (3%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSLN----SNGHVQNT 142
MAD+PMPTRW+FQ FGRKK+ E T++ VS+G+S+ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLYYDAKFGRKKVAE-NGDTATDKAVSNGNSVTVTIVSNGN-KRA 58
Query: 143 SDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP 202
S+MAVYEQ+R +G NG + +++ER QK LLP F+SAE RALAESL RDIIRGSP
Sbjct: 59 SEMAVYEQFRGEGLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRGSP 118
Query: 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 262
DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT
Sbjct: 119 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 178
Query: 263 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 322
ECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARSEH
Sbjct: 179 ECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 238
Query: 323 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRA 382
EASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ ARRA
Sbjct: 239 EASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRA 298
Query: 383 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 442
MFE LLP Q EE +PYD+LV++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+V P+
Sbjct: 299 MFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVVPE 358
Query: 443 DELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
+ELP++GPI+ ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 EELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524963|ref|XP_003531097.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 310/407 (76%), Positives = 348/407 (85%), Gaps = 17/407 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 140
MAD+PMPTRW+FQ FGRKK+ E + + VS+G+ ++ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLCYDAKFGRKKVAE-NGDDAAGKAVSNGNGNSVTVAIVSNGN-K 58
Query: 141 NTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 200
S+MAVYEQ+R++G NG + + +ER QK LLP F+SAE RALAESL RDIIRG
Sbjct: 59 RASEMAVYEQFRSEGQNQIHTNGFVPTLTDERPQKSLLPPFESAEMRALAESLSRDIIRG 118
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 260
SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 119 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 178
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
ATEC TTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 179 ATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARS 238
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380
EHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ AR
Sbjct: 239 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVAR 298
Query: 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 440
RAMFE LLP Q GEES+PYD+L ++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+V
Sbjct: 299 RAMFEELLPQQPGEESIPYDILEDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQNQDVV 358
Query: 441 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
P++ELP++GPIR ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 359 PEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078976|ref|XP_002305703.1| predicted protein [Populus trichocarpa] gi|222848667|gb|EEE86214.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 315/407 (77%), Positives = 335/407 (82%), Gaps = 38/407 (9%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 140
MADEP TRW+FQ FGRKK E S + + N NGHV
Sbjct: 1 MADEPSVTRWSFQDFKTFYDGKFGRKKAAAAAAAEAEAASDSQQNGQTTVVASNGNGHVN 60
Query: 141 NTSDMAVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 200
N+SDMA+YEQ +K LLP FDSAETRALAESLCRDIIRG
Sbjct: 61 NSSDMAIYEQ-----------------------KKSLLPAFDSAETRALAESLCRDIIRG 97
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 260
SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 98 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 157
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 158 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 217
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380
EHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR
Sbjct: 218 EHEASRRLKTELLIQMDGLTRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEAR 277
Query: 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 440
AMFE LLPSQ EE LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRR+M LLE +EV
Sbjct: 278 AAMFEELLPSQPDEEKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRIMTLLEDTEEVV 337
Query: 441 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
P+DELP++GPIRPED+E ALKNTRPSAHLHAHRY+KFNADYGS+ILQ
Sbjct: 338 PEDELPKVGPIRPEDIETALKNTRPSAHLHAHRYDKFNADYGSQILQ 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476445|ref|XP_003608508.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|355509563|gb|AES90705.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/402 (74%), Positives = 337/402 (83%), Gaps = 10/402 (2%)
Query: 95 AMADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDM 145
A DEPMPTRW+F+ GRKK+ E + ++ S G + N N H + TSD
Sbjct: 2 AADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNG-NSSGIASNGNSHGKVTSDR 60
Query: 146 AVYEQYRTQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVK 205
A+Y+Q+++QG T NG N ++E+ +K LLP F+SAE R LAESL RDIIRGSP+VK
Sbjct: 61 AIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVK 120
Query: 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265
WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC
Sbjct: 121 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECN 180
Query: 266 TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 325
TTFFNISASS+VSKWRGDSEKL+KVLFELARHHAP+TIFLDEIDAIISQRGE RSEHEAS
Sbjct: 181 TTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEAS 240
Query: 326 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 385
RRLKTELLIQMDGL ++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAMFE
Sbjct: 241 RRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFE 300
Query: 386 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445
LLP Q EE +PYDLLV+RTEGYSGSDIRL+ KE AMQPLRRLM LE +V P++EL
Sbjct: 301 ELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMTQLEQEPDVVPEEEL 360
Query: 446 PQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
P++GP+ PEDVE AL+NTRPSAHL AH+Y+ FNADYGS+ILQ
Sbjct: 361 PKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ 402
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113079|ref|XP_002332658.1| predicted protein [Populus trichocarpa] gi|222832704|gb|EEE71181.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/314 (89%), Positives = 299/314 (95%)
Query: 174 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 233
QKPL+P FDS+ETRALAESLCRDIIRGSP+VKWESIKGLENAKRLLKEAVVMPIKYPKYF
Sbjct: 1 QKPLIPAFDSSETRALAESLCRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYF 60
Query: 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 293
TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE
Sbjct: 61 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 120
Query: 294 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353
LARHHAPSTIFLDEIDAIISQRGEA SEHEASRRLKTELLIQMDGLT++ ELVFVLAATN
Sbjct: 121 LARHHAPSTIFLDEIDAIISQRGEASSEHEASRRLKTELLIQMDGLTRTKELVFVLAATN 180
Query: 354 LPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 413
LPWELDAAMLRRLEKRILVPLP+ EARR MFE LLPSQ E+ LPYDLLVERTEG+SGSD
Sbjct: 181 LPWELDAAMLRRLEKRILVPLPEPEARRTMFEELLPSQPDEDMLPYDLLVERTEGFSGSD 240
Query: 414 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR 473
IRL+ KEAAMQPLRRLM LLE R+E+ PDDELP++GP+R ED+E ALKNTRPSAHLHAHR
Sbjct: 241 IRLLCKEAAMQPLRRLMTLLEDREEIVPDDELPKVGPLRSEDIETALKNTRPSAHLHAHR 300
Query: 474 YEKFNADYGSEILQ 487
+EKFN+DYGS+ILQ
Sbjct: 301 HEKFNSDYGSQILQ 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619270|gb|EEE55402.1| hypothetical protein OsJ_03507 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/383 (75%), Positives = 331/383 (86%), Gaps = 9/383 (2%)
Query: 105 WTFQFGRKKIKEPEKGEITERPVSDGSSLNSNGHV-QNTSDMAVYEQYRTQGSGSTCLNG 163
W +FG KK +EPE+ + ++ +NG V + TSD+AVYEQ+ Q +
Sbjct: 27 WESRFGGKKEQEPEQ--------NGHANGVANGSVRKRTSDLAVYEQFEQQARQTEVRAA 78
Query: 164 VLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAV 223
+ + + +QKPLLP+F+SAE R LAE+L RDIIRGSPDVKWESIKGLENAKRLLKEAV
Sbjct: 79 AIRDGNADAIQKPLLPSFESAEMRNLAETLLRDIIRGSPDVKWESIKGLENAKRLLKEAV 138
Query: 224 VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 283
VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS+VSKWRGD
Sbjct: 139 VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGD 198
Query: 284 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343
SEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT+++
Sbjct: 199 SEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTN 258
Query: 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV 403
+LVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR AMFE LLPS T + +PYD LV
Sbjct: 259 DLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARHAMFEELLPSTTSKLEVPYDTLV 318
Query: 404 ERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463
E+TEGYSGSDIRLV KEAAMQPLRRLM +LE R E+ P++ELP++GP++PED+E+AL+NT
Sbjct: 319 EKTEGYSGSDIRLVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALRNT 378
Query: 464 RPSAHLHAHRYEKFNADYGSEIL 486
RPSAHLHAHRYEKFN DYGS+IL
Sbjct: 379 RPSAHLHAHRYEKFNQDYGSQIL 401
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2062274 | 393 | CCP1 "conserved in ciliated sp | 0.778 | 0.964 | 0.723 | 8.1e-147 | |
| UNIPROTKB|Q8IYT4 | 538 | KATNAL2 "Katanin p60 ATPase-co | 0.644 | 0.583 | 0.590 | 3.9e-92 | |
| UNIPROTKB|E2RK60 | 535 | KATNAL2 "Uncharacterized prote | 0.640 | 0.583 | 0.586 | 6.3e-92 | |
| UNIPROTKB|J9P5W4 | 378 | KATNAL2 "Uncharacterized prote | 0.640 | 0.825 | 0.586 | 6.3e-92 | |
| UNIPROTKB|E1BAN2 | 534 | KATNAL2 "Uncharacterized prote | 0.640 | 0.584 | 0.583 | 1e-91 | |
| UNIPROTKB|E1BZ64 | 466 | KATNAL2 "Uncharacterized prote | 0.644 | 0.673 | 0.583 | 1.7e-91 | |
| UNIPROTKB|J9PBP3 | 598 | KATNAL2 "Uncharacterized prote | 0.622 | 0.506 | 0.6 | 4.5e-91 | |
| MGI|MGI:1924234 | 539 | Katnal2 "katanin p60 subunit A | 0.632 | 0.571 | 0.583 | 5.7e-91 | |
| RGD|1564708 | 522 | Katnal2 "katanin p60 subunit A | 0.636 | 0.593 | 0.583 | 1.2e-90 | |
| UNIPROTKB|J9NYM5 | 431 | KATNAL2 "Uncharacterized prote | 0.468 | 0.529 | 0.673 | 8.7e-79 |
| TAIR|locus:2062274 CCP1 "conserved in ciliated species and in the land plants 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
Identities = 290/401 (72%), Positives = 331/401 (82%)
Query: 98 DEPMPTRWTF---------QFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVY 148
DEP TRW+F +FGRKK+ E + ++P DGSS +NG V N S
Sbjct: 4 DEPSQTRWSFLEFKTFYDAKFGRKKLPEEDVSN-KDQP-EDGSSNGNNGDVNNNSSPV-- 59
Query: 149 EQYRTQGSGSTCL-NGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWE 207
T G+T L NG NVI E+ +K + P F+SAETR LAESL RDIIRG+P++KWE
Sbjct: 60 ----TNQDGNTALANG---NVIREKPKKSMFPPFESAETRTLAESLSRDIIRGNPNIKWE 112
Query: 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267
SIKGLENAK+LLKEAVVMPIKYP YF GLL+PWKGILLFGPPGTGKTMLAKAVATEC TT
Sbjct: 113 SIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVATECNTT 172
Query: 268 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG-EARSEHEASR 326
FFNISASSVVSKWRGDSEKLI+VLF+LARHHAPSTIFLDEIDAIISQRG E RSEHEASR
Sbjct: 173 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 232
Query: 327 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 386
RLKTELLIQMDGL +++ELVFVLAATNLPWELDAAMLRRLEKRILVPLPD EARR MFE
Sbjct: 233 RLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARRGMFEM 292
Query: 387 LLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 446
L+PSQ G+E LP+D+LVE++EGYSGSDIR++ KEAAMQPLRR + +LE R++V P+DELP
Sbjct: 293 LIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDELP 352
Query: 447 QIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
+IGPI PED++ AL NTRPSAHLHAH Y+KFN DYGS+IL+
Sbjct: 353 KIGPILPEDIDRALSNTRPSAHLHAHLYDKFNDDYGSQILK 393
|
|
| UNIPROTKB|Q8IYT4 KATNAL2 "Katanin p60 ATPase-containing subunit A-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 190/322 (59%), Positives = 240/322 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 462 NTRPSAHLHAHRYEKFNADYGS 483
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
|
| UNIPROTKB|E2RK60 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 213 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 272
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 273 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 332
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 333 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 392
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 393 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 452
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 453 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 510
Query: 460 LKNTRPSAHLHAHRYEKFNADYGS 483
L +T+PSA RY + +++ S
Sbjct: 511 LAHTKPSAKNLTQRYSAWQSEFES 534
|
|
| UNIPROTKB|J9P5W4 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 56 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 115
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 116 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 175
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 176 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 235
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 236 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 295
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 296 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 353
Query: 460 LKNTRPSAHLHAHRYEKFNADYGS 483
L +T+PSA RY + +++ S
Sbjct: 354 LAHTKPSAKNLTQRYSAWQSEFES 377
|
|
| UNIPROTKB|E1BAN2 KATNAL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 189/324 (58%), Positives = 239/324 (73%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 212 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 271
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 272 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 331
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 332 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 391
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR AM LP+ + +L Y L
Sbjct: 392 VLAASNLPWELDCAMLRRLEKRILVDLPSQEAREAMIHHWLPAVSRSSALELRADLEYSL 451
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L TEGYSGSDI+LV +EAAM+P+R++ LE Q + LP Q+ + D
Sbjct: 452 LSRETEGYSGSDIKLVCREAAMRPVRKIFNALENHQ--SGSSNLPGIQLDTVTTADFLDV 509
Query: 460 LKNTRPSAHLHAHRYEKFNADYGS 483
L +T+PSA RY + +++ S
Sbjct: 510 LAHTKPSAKSLTQRYAAWQSEFES 533
|
|
| UNIPROTKB|E1BZ64 KATNAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL + E R LA + +DI +P+VKW+ I GL+ AKRL+KEAVV PI+
Sbjct: 144 SERLLKPLSAFIGMNGEMRELATVVSKDIYLHNPNVKWDDIIGLDAAKRLVKEAVVYPIR 203
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 204 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 263
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG + EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 264 RVLFELARYHAPSTIFLDELESVMSQRGTISGGEHEGSRRMKTELLVQMDGLARSDDLVF 323
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG----EESLPYDL 401
VLAA+NLPWELD+AMLRRLEKRILV LP+ EAR+AM LP S +G L Y L
Sbjct: 324 VLAASNLPWELDSAMLRRLEKRILVDLPNQEARQAMIRHWLPPLSNSGGVELRTDLDYSL 383
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
L T+GYSGSDI+LV KEAAM+P+R++ LE Q + + I D +
Sbjct: 384 LGRETDGYSGSDIKLVCKEAAMRPVRKVFDALENHQPGNSNLAAVHLDMITTADFLDVIA 443
Query: 462 NTRPSAHLHAHRYEKFNADYGS 483
+T+PSA + +Y + ++ S
Sbjct: 444 HTKPSAKKLSQKYTAWQREFES 465
|
|
| UNIPROTKB|J9PBP3 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 189/315 (60%), Positives = 236/315 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 275
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 455
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 513
Query: 460 LKNTRPSAHLHAHRY 474
L +T+PSA RY
Sbjct: 514 LAHTKPSAKNLTQRY 528
|
|
| MGI|MGI:1924234 Katnal2 "katanin p60 subunit A-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 189/324 (58%), Positives = 241/324 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 459
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 460 LKNTRPSAHLHAHRY----EKFNA 479
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
|
|
| RGD|1564708 Katnal2 "katanin p60 subunit A-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 200 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 259
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 260 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 319
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 320 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 379
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 401
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 380 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELRTQLEYSV 439
Query: 402 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + Q+ + ED L
Sbjct: 440 LSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDFLDVLA 499
Query: 462 NTRPSAHLHAHRY----EKFNA 479
+T+PSA RY EKF +
Sbjct: 500 HTKPSAKNLTERYLAWQEKFES 521
|
|
| UNIPROTKB|J9NYM5 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 155/230 (67%), Positives = 190/230 (82%)
Query: 170 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 228
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 188 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 247
Query: 229 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 288
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 248 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 307
Query: 289 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 347
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 308 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 367
Query: 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL 397
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP + +L
Sbjct: 368 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRAL 417
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.3 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-76 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 4e-66 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 4e-64 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 4e-60 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 8e-54 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 6e-53 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 6e-52 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 3e-50 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 1e-44 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 3e-43 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 9e-39 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 5e-37 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 3e-34 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 4e-32 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 7e-30 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 4e-29 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 5e-23 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-15 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 1e-11 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-07 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-05 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 3e-05 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 6e-05 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 8e-05 | |
| TIGR02639 | 730 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi | 2e-04 | |
| pfam13479 | 201 | pfam13479, AAA_24, AAA domain | 2e-04 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 2e-04 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 6e-04 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 8e-04 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 8e-04 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 8e-04 | |
| PRK11034 | 758 | PRK11034, clpA, ATP-dependent Clp protease ATP-bin | 0.001 | |
| COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone | 0.002 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.002 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 0.004 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 1e-76
Identities = 122/281 (43%), Positives = 169/281 (60%), Gaps = 30/281 (10%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
DV + I GLE AK LKEA+ P+K P+ F L L P KG+LL+GPPGTGKT+LAKAV
Sbjct: 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A E ++ F ++ S ++SKW G+SEK I+ LFE AR APS IF+DEID++ S RG S
Sbjct: 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP--S 354
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 378
E + RR+ +LL ++DG+ +++ V V+AATN P +LD A+LR R ++ I VPLPD E
Sbjct: 355 EDGSGRRVVGQLLTELDGIEKAEG-VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413
Query: 379 ARRAMFESLLPSQ--TGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436
R +F+ L + E + + L E TEGYSG+DI + +EAA++ LR
Sbjct: 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE-------- 465
Query: 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 477
A E+ +D ALK +PS YE++
Sbjct: 466 ---ARRREVTL------DDFLDALKKIKPSV-----TYEEW 492
|
Length = 494 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 4e-66
Identities = 122/295 (41%), Positives = 173/295 (58%), Gaps = 6/295 (2%)
Query: 192 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 250
S R+++ P+V+W I GLE K+ L+EAV P+K+P+ F + + P KG+LLFGPPG
Sbjct: 438 SAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPG 497
Query: 251 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 310
TGKT+LAKAVATE F + ++SKW G+SEK I+ +F AR AP+ IF DEIDA
Sbjct: 498 TGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDA 557
Query: 311 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEK 368
I RG AR + + R+ +LL +MDG+ + +V V+AATN P LD A+LR R ++
Sbjct: 558 IAPARG-ARFDTSVTDRIVNQLLTEMDGIQELSNVV-VIAATNRPDILDPALLRPGRFDR 615
Query: 369 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
ILVP PD EAR+ +F+ S E + + L E TEGY+G+DI V +EAAM LR
Sbjct: 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675
Query: 429 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 482
+ + ++E + + ALK +PS + RYE+ +
Sbjct: 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 4e-64
Identities = 102/248 (41%), Positives = 148/248 (59%), Gaps = 13/248 (5%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 259
PDV +E I GL+ + ++E V +P+K P+ F L + P KG+LL+GPPGTGKT+LAKA
Sbjct: 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VA + TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG 264
Query: 320 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 375
+ + E R + ELL Q+DG V V+ ATN P LD A+LR R +++I PLP
Sbjct: 265 TSGDREVQRTM-LELLNQLDGFDPRGN-VKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322
Query: 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435
D E R + + + + +LL TEG+SG+D++ + EA M +R E
Sbjct: 323 DEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIR------ER 376
Query: 436 RQEVAPDD 443
R EV +D
Sbjct: 377 RDEVTMED 384
|
Length = 406 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 4e-60
Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 259
SP+V +E I GLE R ++EAV +P+K P+ F + + P KG+LL+GPPGTGKT+LAKA
Sbjct: 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKA 184
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VA E TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 185 VAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244
Query: 320 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 375
+ + E R L +LL +MDG V ++AATN LD A+LR R ++ I VPLP
Sbjct: 245 TSGDREVQRTL-MQLLAEMDGFDPRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302
Query: 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435
D E R + + + + + L E TEG SG+D++ + EA M +R +
Sbjct: 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR------DD 356
Query: 436 RQEVAPDD 443
R EV +D
Sbjct: 357 RTEVTMED 364
|
Length = 389 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 8e-54
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 13/247 (5%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
P+V +E I GLE R ++EAV +P+K+P+ F + + P KG+LL+GPPGTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A E TF + S +V K+ G+ +L++ +FELA+ APS IF+DEIDAI ++R ++ +
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236
Query: 321 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 376
+ E R L +LL ++DG V V+AATN P LD A+LR R ++ I VPLPD
Sbjct: 237 SGDREVQRTL-MQLLAELDGFDPRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294
Query: 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436
E R + + E + + + + TEG SG+D++ + EA M +R E R
Sbjct: 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR------EER 348
Query: 437 QEVAPDD 443
V DD
Sbjct: 349 DYVTMDD 355
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 6e-53
Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 13/293 (4%)
Query: 182 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPW 240
++ E + + +I R P V +E I GL+ AK ++E V +P+K+P+ F L + P
Sbjct: 153 EATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPP 212
Query: 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 300
KG+LL+GPPGTGKT+LAKAVA E F +I+ ++SK+ G+SE+ ++ +F+ A +AP
Sbjct: 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272
Query: 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360
S IF+DEIDAI +R E E E +R+ +LL MDGL V V+ ATN P LD
Sbjct: 273 SIIFIDEIDAIAPKREEVTGEVE--KRVVAQLLTLMDGLKGRGR-VIVIGATNRPDALDP 329
Query: 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 418
A+ R R ++ I++ +PD AR+ + + + E + D L E T G+ G+D+ ++
Sbjct: 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389
Query: 419 KEAAMQPLRRLMVLLEGR----QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467
KEAAM LRR + EG+ E P + L ++ + +D ALK PSA
Sbjct: 390 KEAAMAALRR--FIREGKINFEAEEIPAEVLKEL-KVTMKDFMEALKMVEPSA 439
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 6e-52
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 302
+LL+GPPGTGKT LAKAVA E F IS S +VSK+ G+SEK ++ LFE A+ AP
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 362
IF+DEIDA+ RG SRR+ +LL ++DG T S V V+AATN P +LD A+
Sbjct: 61 IFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPAL 118
Query: 363 LR-RLEKRILVPL 374
LR R ++ I PL
Sbjct: 119 LRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 3e-50
Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
PDV + I GL+ K+ ++EAV +P+ P+ + + + P +G+LL+GPPGTGKTMLAKAV
Sbjct: 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A TF + S V K+ G+ ++++ +F LAR +APS IF+DE+D+I ++R +A++
Sbjct: 200 AHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259
Query: 321 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 376
+ E R L ELL QMDG Q+ V V+ ATN LD A+LR RL+++I PLPD
Sbjct: 260 GADREVQRIL-LELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317
Query: 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
+R +F+++ E + + V R E S +DI + +EA MQ +R+
Sbjct: 318 RRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 259
+P + I GLE + +KEAV +P+ +P+ + + + P KG++L+GPPGTGKT+LAKA
Sbjct: 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKA 236
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VA E TF + S ++ K+ GD KL++ LF +A +APS +F+DEIDAI ++R +A
Sbjct: 237 VANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT 296
Query: 320 S--EHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 374
S E E R + ELL Q+DG ++ D V V+ ATN LD A++R R++++I P
Sbjct: 297 SGGEKEIQRTM-LELLNQLDGFDSRGD--VKVIMATNRIESLDPALIRPGRIDRKIEFPN 353
Query: 375 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427
PD + +R +FE T E + + + + SG+DI+ + EA + LR
Sbjct: 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406
|
Length = 438 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-43
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 16/254 (6%)
Query: 180 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLL 237
+F ++ + L E P V ++ + G++ AK L E +V +K P FT G
Sbjct: 36 SFGKSKAKLLNE--------EKPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAK 86
Query: 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 297
P KG+LL GPPGTGKT+LAKAVA E FF+IS S V + G ++ LFE A+
Sbjct: 87 IP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK 145
Query: 298 HAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356
+AP IF+DEIDA+ QRG ++ + +LL++MDG + ++ V+AATN P
Sbjct: 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI-VIAATNRPD 204
Query: 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414
LD A+LR R +++++V LPD + R + + ++ + + RT G+SG+D+
Sbjct: 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264
Query: 415 RLVSKEAAMQPLRR 428
+ EAA+ R+
Sbjct: 265 ANLLNEAALLAARK 278
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 9e-39
Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 26/267 (9%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMP-IKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 260
D+ + + G E AKR K ++M ++ P+ F G +P K +L +GPPGTGKTM+AKA+
Sbjct: 116 SDITLDDVIGQEEAKR--KCRLIMEYLENPERF-GDWAP-KNVLFYGPPGTGKTMMAKAL 171
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A E K + A+ ++ + GD + I L+E AR AP +F+DE+DAI R
Sbjct: 172 ANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380
+ S + LL ++DG+ +++ +V + AATN P LD A+ R E+ I LP+ E R
Sbjct: 232 RGDVSEIVNA-LLTELDGIKENEGVVTI-AATNRPELLDPAIRSRFEEEIEFKLPNDEER 289
Query: 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP-LRRLMVLLEGRQEV 439
+ E L +T+G SG DI KE ++ L R + E R++V
Sbjct: 290 LEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI----KEKVLKTALHR--AIAEDREKV 343
Query: 440 APDDELPQIGPIRPEDVEIALKNTRPS 466
ED+E ALK R
Sbjct: 344 ------------EREDIEKALKKERKR 358
|
Length = 368 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-37
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 6/230 (2%)
Query: 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 261
+ + I G+E AK +E VV +K P+ FT + KG+LL GPPGTGKT+LAKA+A
Sbjct: 179 GITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 237
Query: 262 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RS 320
E + FF+IS S V + G ++ LF+ A+ ++P +F+DEIDA+ QRG
Sbjct: 238 GEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 378
++ + +LL +MDG + ++ V+AATN LDAA+LR R +++I V LPD E
Sbjct: 298 GNDEREQTLNQLLTEMDGFKGNKGVI-VIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356
Query: 379 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
R + + ++ + +L+ RT G+SG+D+ + EAA+ RR
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406
|
Length = 638 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLA 257
V + + G++ AK L E +V +K PK + L P KG+LL GPPGTGKT+LA
Sbjct: 143 DQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLA 200
Query: 258 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317
KAVA E FF+IS S V + G ++ LFE A+ +AP IF+DEIDA+ QRG
Sbjct: 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260
Query: 318 AR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 374
++ + +LL++MDG + E V V+AATN P LD A+LR R +++ILV L
Sbjct: 261 GLGGGNDEREQTLNQLLVEMDGFGGN-EGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319
Query: 375 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 422
PD + R + + ++ E + + T G+SG+D+ + EAA
Sbjct: 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAA 367
|
Length = 596 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-32
Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%)
Query: 180 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 239
+F ++ R L E D I+ + + + G + AK + E +V ++ P F L
Sbjct: 133 SFGKSKARMLTE----DQIKTT----FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGK 183
Query: 240 W-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 298
KG+L+ GPPGTGKT+LAKA+A E K FF IS S V + G ++ +FE A+
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA 243
Query: 299 APSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357
AP IF+DEIDA+ QRG H+ + ++L++MDG + +E + V+AATN P
Sbjct: 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDV 302
Query: 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 415
LD A+LR R +++++V LPD R + + + + ++ T G+SG+D+
Sbjct: 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362
Query: 416 LVSKEAAM 423
+ EAA+
Sbjct: 363 NLVNEAAL 370
|
Length = 644 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 7e-30
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 29/232 (12%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
PDV + I GL + +++AV +P +P+ + L P KG+LL+GPPG GKT++AKAV
Sbjct: 177 PDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAV 236
Query: 261 ATEC----------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA----PSTIFLD 306
A K+ F NI +++K+ G++E+ I+++F+ AR A P +F D
Sbjct: 237 ANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFD 296
Query: 307 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-- 364
E+D++ RG S + + +LL ++DG+ D V V+ A+N +D A+LR
Sbjct: 297 EMDSLFRTRGSGVSS-DVETTVVPQLLAEIDGVESLDN-VIVIGASNREDMIDPAILRPG 354
Query: 365 RLEKRILVPLPDTEARRAMF----------ESLLPSQTGEESLPYDLLVERT 406
RL+ +I + PD EA +F L + G+ L++R
Sbjct: 355 RLDVKIRIERPDAEAAADIFAKYLTDDLPLPEDLAAHDGDREATAAALIQRV 406
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 93/243 (38%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 225 MPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 283
+P+K P+ F L + P KG+LL GPPGTGKT+LA+A+A F +I+ ++SK+ G+
Sbjct: 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60
Query: 284 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343
SE ++ LFE A APS IF+DEIDA+ +R + E E RR+ +LL MDGL +
Sbjct: 61 SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVE--RRVVAQLLALMDGLKRGQ 118
Query: 344 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR------AMFESLLPSQTGEE 395
+V ATN P LD A R R ++ I V LPD R L P TG+
Sbjct: 119 VIVI--GATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKT 176
Query: 396 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 455
L RT G SG+D+ ++KEAA++ LRR + L+ V DD + + P
Sbjct: 177 ------LAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSR 230
Query: 456 VEI 458
+
Sbjct: 231 GVL 233
|
Length = 494 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-23
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 36/176 (20%)
Query: 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KT 266
G E A L+EA+ L P K +LL+GPPGTGKT LA+A+A E
Sbjct: 1 VGQEEAIEALREAL------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48
Query: 267 TFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 323
F ++AS ++ L+++LFELA P +F+DEID++
Sbjct: 49 PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL------------ 96
Query: 324 ASRRLKTELLIQMDGL---TQSDELVFVLAATNLPWELDAAM--LRRLEKRILVPL 374
SR + LL ++ L E V V+ ATN P D RL+ RI++PL
Sbjct: 97 -SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 1e-15
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 239 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS--------------SVVSKWR 281
P + IL+ GPPG+GKT LA+A+A E I K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 282 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 341
G E +++ LAR P + LDEI +++ EA L +++ L +
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA--------LLLLLEELRLLLLLK 112
Query: 342 SDELVFVLAATNLP-WELDAAMLRRLEKRILVPLPD 376
S++ + V+ TN A + RR ++RI++ L
Sbjct: 113 SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 201 SPDVKWESIKGLENAKRLLKE-AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 259
S + K I GL+N K LK+ + + Y GL +P +G+LL G GTGK++ AKA
Sbjct: 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNY--GLPTP-RGLLLVGIQGTGKSLTAKA 278
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
+A + + + + G+SE ++ + +A +P +++DEID S E++
Sbjct: 279 IANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS-ESK 337
Query: 320 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN----LPWELDAAMLR--RLEKRILVP 373
+ + R+ + L++ VFV+A N LP E +LR R ++ +
Sbjct: 338 GDSGTTNRVLATFITW---LSEKKSPVFVVATANNIDLLPLE----ILRKGRFDEIFFLD 390
Query: 374 LPDTEARRAMFESLL----PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 421
LP E R +F+ L P + L + + +SG++I EA
Sbjct: 391 LPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFSGAEIEQSIIEA 440
|
Length = 489 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS- 301
++L+GPPGTGKT LA+ +A F +SA + K ++ + E AR +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAG 91
Query: 302 --TI-FLDEI 308
TI F+DEI
Sbjct: 92 RRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 243 ILLFGPPGTGKTMLAKAVA-----TECKTTFFNISA---SSVVSKWRGDSEKLIKV---- 290
L GP G GKT LAKA+A E ++S VS+ G +
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG 65
Query: 291 -LFELARHHAPSTIFLDEIDAI 311
L E R S + +DEI+
Sbjct: 66 QLTEAVRRKPYSIVLIDEIEKA 87
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 45/178 (25%), Positives = 64/178 (35%), Gaps = 31/178 (17%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNIS------ASSVVSKWRGDSEKLIKVLFELAR 296
+LL GPPG GKT+LA+A+A F I S ++ + + L F
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105
Query: 297 ----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSD--ELVF 347
+ LDEI+ A E + + L L + + GLT
Sbjct: 106 GPLFAAVRVILLLDEIN-------RAPPEVQNA--LLEALEERQVTVPGLTTIRLPPPFI 156
Query: 348 VLAATNLPW-----ELDAAMLRRLEKRILV--PLPDTEARRAMFESLLPSQTGEESLP 398
V+A N L A+L R RI V P + E R + + ESL
Sbjct: 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLV 214
|
Length = 329 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 241 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVL 291
+GIL+ GPPGTGKT LA +A E F IS S + S +E L + L
Sbjct: 66 RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118
|
Length = 450 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 245 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH---HAPS 301
L+GPPGTGKT LA+ +A F +SA + K ++ + E AR
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRR 105
Query: 302 TI-FLDEI 308
TI FLDEI
Sbjct: 106 TILFLDEI 113
|
Length = 436 |
| >gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 244 LLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV--SKWRGDSEKLIK-V 290
LL G PG GKT + + +A +++ +++ +K+RGD E+ +K V
Sbjct: 206 LLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAV 265
Query: 291 LFELARHHAPSTI-FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349
+ E+ + P+ I F+DEI I+ + +AS LK L S ++ +
Sbjct: 266 VSEIEKE--PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--------SSGKIRCIG 315
Query: 350 AAT----NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390
+ T +E D A+ RR +K I V P E + + L
Sbjct: 316 STTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEQ 359
|
[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730 |
| >gnl|CDD|222163 pfam13479, AAA_24, AAA domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS------EKLIKVL 291
K +L++GPPG GKT LAK KT F ++ A + RGD+ + L L
Sbjct: 2 KNIK-VLIYGPPGIGKTSLAKT-LPP-KTLFLDLDAGTTKVLSRGDNVDIRSWQDLRDFL 58
Query: 292 FELARHHAP-STIFLDEIDAI-------ISQRGEARSEHE 323
ELA A T+ +D I + I ++ + +SE
Sbjct: 59 DELAEDLAEYDTLVIDTITKLERLCLAWIKKQNKKKSERT 98
|
This AAA domain is found in a wide variety of presumed phage proteins. Length = 201 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 241 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVS 278
+ +L+ GPPGTGKT LA A++ E T F IS S V S
Sbjct: 51 RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYS 90
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 20/57 (35%)
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG---ILLFGPPGTGKTMLAKAVAT 262
+KG E AKR L+ A G +L+ GPPG+GKTMLAK +
Sbjct: 5 VKGQEQAKRALEIAAA-----------------GGHNLLMIGPPGSGKTMLAKRLPG 44
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 302
+LL+GPPG GKT LA +A E S + K GD L +L L
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSG-PALEK-PGD---LAAILTNLEEG---DV 105
Query: 303 IFLDEI 308
+F+DEI
Sbjct: 106 LFIDEI 111
|
Length = 328 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 302
+LLFGPPG GKT LA +A E S ++ GD L +L L
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 106
Query: 303 IFLDEIDAI 311
+F+DEI +
Sbjct: 107 LFIDEIHRL 115
|
Length = 332 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 211 GLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-- 264
GLE KR LK + M + + + +L GPPGTGKT +A+ VA C
Sbjct: 280 GLERVKRQVAALKSSTAMALARAERGLPVAQTSNHMLFAGPPGTGKTTIARVVAKIYCGL 339
Query: 265 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
K +S + ++ ++ G+SE + + A +FLDE ++ +
Sbjct: 340 GVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSALGGV---LFLDEAYTLVETGYGQKD 396
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLA 350
LL +M+ D LV + A
Sbjct: 397 PFGLE--AIDTLLARME--NDRDRLVVIGA 422
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 244 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 291
LL G G GKT +A+ +A +C +I + +K+RGD EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 292 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 348
+ S +F+DEI II + + +A+ +K L I++ G T E
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 349 LAATNLPWELDAAMLRRLEK-RILVPLPD 376
+N+ +E D A+ RR +K I P +
Sbjct: 328 ---SNI-FEKDRALARRFQKIDITEPSIE 352
|
Length = 758 |
| >gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 258
+KG E AKR L+ A G +LL GPPGTGKTMLA
Sbjct: 181 VKGQEQAKRALEIAA----------AG----GHNLLLVGPPGTGKTMLAS 216
|
Length = 490 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 27/125 (21%)
Query: 179 PNFDSAE-TRALAESLCRDII---RGSPDVKWE--SIKGLENAKRLLKEAVVMPIKY--- 229
F++ + + + D I V ++ S G+ +K
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTR 60
Query: 230 ----------PKYFT------GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273
K F GL+ P + ++ G PG+G + L K +A T F+I
Sbjct: 61 GFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA--SNTDGFHIGV 118
Query: 274 SSVVS 278
V++
Sbjct: 119 EGVIT 123
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 302
+LL+GPPG GKT LA +A E S ++ GD L +L L
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 84
Query: 303 IFLDEIDAI 311
+F+DEI +
Sbjct: 85 LFIDEIHRL 93
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 100.0 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.98 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.97 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.97 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.97 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.96 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.91 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.89 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.89 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.88 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.87 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.87 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.86 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.86 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.85 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.83 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.8 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.8 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.78 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.78 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.77 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.77 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.74 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.72 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.72 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.71 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.69 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.68 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.68 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.68 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.68 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.67 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.66 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.66 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.66 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.65 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.65 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.64 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.64 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.63 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.63 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.63 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.62 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.61 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.61 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.61 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.61 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.61 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.6 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.6 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.6 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.6 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.6 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.59 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.59 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.58 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.57 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.57 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.57 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.57 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.56 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.55 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.55 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.54 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.54 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.54 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.54 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.53 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.53 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.52 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.52 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.51 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.5 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.48 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.47 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.47 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.47 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.47 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.46 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.45 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.44 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.44 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.43 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.42 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.41 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.37 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.37 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.35 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.35 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.33 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.33 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.31 | |
| PHA02244 | 383 | ATPase-like protein | 99.31 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.31 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.31 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.3 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.3 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.29 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.29 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.28 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.26 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.23 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.23 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.23 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.22 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.22 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.22 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.22 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.21 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.21 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.2 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.19 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.18 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.18 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.18 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.17 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.17 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.16 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.16 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.16 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.14 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.13 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.13 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.12 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.12 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.12 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.11 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.11 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.1 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.09 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.09 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.09 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.06 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.05 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.05 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.05 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.05 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.03 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 99.0 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 99.0 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.99 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.98 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.98 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.97 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.97 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.96 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.94 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.93 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 98.93 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.91 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.91 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.91 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.89 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.89 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.89 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.87 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.87 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.87 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.87 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.87 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.86 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.84 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.83 | |
| PRK08181 | 269 | transposase; Validated | 98.83 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.82 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.76 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.76 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.75 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.73 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.72 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.72 | |
| PRK06526 | 254 | transposase; Provisional | 98.69 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.69 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.68 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.67 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.67 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.66 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.6 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.59 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.57 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.57 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.54 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.54 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.52 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.52 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.51 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.51 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.5 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.47 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.44 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.41 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.38 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.34 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.33 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.31 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.31 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.31 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.23 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.22 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.21 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 98.21 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.15 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.14 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.13 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.13 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.12 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.12 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.12 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.09 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 98.05 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.03 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 98.01 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 98.01 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.99 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 97.9 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.89 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.87 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.86 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.86 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 97.83 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.8 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 97.79 | |
| PF09336 | 62 | Vps4_C: Vps4 C terminal oligomerisation domain; In | 97.79 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.75 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.75 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.74 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.72 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.71 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 97.71 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.7 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.69 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.66 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.64 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 97.62 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.61 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 97.61 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.61 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.61 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 97.59 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.59 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.56 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 97.54 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.53 | |
| PHA02774 | 613 | E1; Provisional | 97.53 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 97.52 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 97.51 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.49 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 97.48 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 97.43 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.43 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 97.43 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.42 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 97.42 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.4 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.39 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.35 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.35 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.34 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 97.34 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.33 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 97.33 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.33 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 97.33 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.32 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.32 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 97.31 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 97.3 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.3 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 97.26 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.26 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.25 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.23 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.23 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.21 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.2 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.2 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.2 | |
| KOG2383 | 467 | consensus Predicted ATPase [General function predi | 97.2 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 97.2 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.19 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.19 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 97.17 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 97.16 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.16 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 97.15 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.15 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.15 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.14 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 97.12 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.12 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 97.12 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 97.11 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 97.11 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.1 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.1 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.1 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.09 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.09 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 97.09 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.08 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 97.08 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.07 | |
| PF13479 | 213 | AAA_24: AAA domain | 97.07 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.07 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 97.06 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.06 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.05 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.04 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.03 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.02 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 97.02 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.02 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.01 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 97.0 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.0 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.98 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.98 | |
| PTZ00202 | 550 | tuzin; Provisional | 96.97 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 96.97 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 96.97 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 96.96 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 96.96 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.95 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 96.95 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 96.95 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 96.94 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 96.93 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 96.93 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 96.92 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.92 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 96.92 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 96.92 | |
| PRK03731 | 171 | aroL shikimate kinase II; Reviewed | 96.9 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 96.9 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 96.9 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 96.89 | |
| PRK06696 | 223 | uridine kinase; Validated | 96.88 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.88 | |
| PRK13764 | 602 | ATPase; Provisional | 96.88 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 96.88 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 96.88 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 96.87 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.87 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 96.86 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 96.86 | |
| PLN02200 | 234 | adenylate kinase family protein | 96.86 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 96.84 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.84 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 96.84 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 96.83 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.81 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.81 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 96.81 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 96.81 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 96.8 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 96.79 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 96.78 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.78 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 96.77 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 96.77 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.77 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.76 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.76 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 96.76 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 96.75 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.74 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.73 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 96.73 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 96.73 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 96.72 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 96.72 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 96.71 | |
| PLN02674 | 244 | adenylate kinase | 96.71 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 96.7 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 96.7 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.7 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 96.69 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 96.68 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 96.68 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 96.67 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.67 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.67 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 96.67 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.67 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.67 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 96.66 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 96.64 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 96.63 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 96.63 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 96.62 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 96.61 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 96.61 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 96.61 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 96.6 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 96.59 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 96.59 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.59 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.58 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.57 | |
| PRK04182 | 180 | cytidylate kinase; Provisional | 96.57 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 96.53 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.53 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 96.53 | |
| COG0324 | 308 | MiaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.53 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.52 | |
| PRK01184 | 184 | hypothetical protein; Provisional | 96.52 | |
| COG1855 | 604 | ATPase (PilT family) [General function prediction | 96.52 | |
| TIGR02173 | 171 | cyt_kin_arch cytidylate kinase, putative. Proteins | 96.51 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 96.51 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 96.5 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 96.5 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 96.47 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.47 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.47 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.46 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.45 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 96.44 | |
| PRK14730 | 195 | coaE dephospho-CoA kinase; Provisional | 96.43 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 96.42 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 96.42 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 96.41 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 96.41 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 96.39 | |
| PRK14526 | 211 | adenylate kinase; Provisional | 96.39 | |
| KOG3928 | 461 | consensus Mitochondrial ribosome small subunit com | 96.38 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 96.38 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.37 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 96.37 | |
| PRK08099 | 399 | bifunctional DNA-binding transcriptional repressor | 96.36 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 96.34 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 96.33 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 96.33 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 96.32 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 96.32 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.28 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 96.26 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 96.25 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.25 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 96.24 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 96.24 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 96.23 | |
| PLN02165 | 334 | adenylate isopentenyltransferase | 96.23 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.21 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 96.21 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.18 | |
| PRK12339 | 197 | 2-phosphoglycerate kinase; Provisional | 96.16 |
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=475.18 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=284.3
Q ss_pred CCCCCCcHHHH-HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHH
Q 011400 177 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 255 (487)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~ 255 (487)
..+.|.+.... .+++.+.+++....|.++|+||.|++++|+-|+|++.+|+..|++|.++..||+|||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 44556666665 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 256 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 256 LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
||||+|.|++..|+.|+.+.+.++|.|++++.++.+|+.|+.++|++|||||||+|+..|+.. .+|+.+++++++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 7899999999999999
Q ss_pred hcCCcCCCCc---EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 336 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 336 ld~~~~~~~~---VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
|||+...... |+|+++||.||+||+|++|||++.|++|+|+.+.|..+++..+.......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999765544 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 484 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 484 (487)
||.++|++|++.++||.++.+..+.......+... .+|+++||+.|+++++||++ .++.+|++|.++|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999887766554444444444 68999999999999999999 5799999999999983
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=422.46 Aligned_cols=271 Identities=42% Similarity=0.665 Sum_probs=253.9
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+..|+...+.|+++|+||+|++++|++|++.+.+|+++|+-|.++ +.|++|||||||||||||++||++|++++++|+
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 3567778888999999999999999999999999999999999887 799999999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
.|++.++.++|+|++|+.++.+|++|+..+|||||+||||++...|++. .+++..+++++||.+|||+... ..|+||
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~-k~V~Vi 574 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLLTEMDGLEAL-KNVLVI 574 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHHHHccccccc-CcEEEE
Confidence 9999999999999999999999999999999999999999999999743 3378899999999999999765 459999
Q ss_pred EEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 350 AATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 350 atTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
++||+|+.||+|++| ||+..|++++||.+.|.+||+.++++.+...+++++.||+.|+||||+||..+|++|+..+++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHH
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNAD 480 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~ 480 (487)
+.++ ...|+.+||++|++..+|+.+.. +..|++|.+.
T Consensus 655 e~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 655 ESIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred Hhcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 8663 13489999999999999999975 7999998764
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=386.22 Aligned_cols=298 Identities=49% Similarity=0.839 Sum_probs=266.9
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 184 AETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+...+...+..-+..+.|+++|+||.|++.+|+.|+|.+.+|.+.|++|.....|++++|||||||||||.||+++|.+
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 264 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 264 l~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
.+..|++|+.++++++|.|++++.++.+|+.|+.+.|+||||||||++++.|.+ .+++.++++..+||.+|+|+-...
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e--nEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE--NESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC--CchHHHHHHHHHHHHhhhccccCC
Confidence 999999999999999999999999999999999999999999999999998775 467788999999999999998888
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..|+|+++||-||.||.+++|||+.+|++|+|+...|..+++.++...+.. .+.|+..|+++|+||+|+||.-+++.|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 889999999999999999999999999999999999999999999776654 4568999999999999999999999999
Q ss_pred hHHHHHHHHHh-----hc--hhcc----------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHH
Q 011400 423 MQPLRRLMVLL-----EG--RQEV----------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 472 (487)
Q Consensus 423 ~~a~rr~~~~l-----e~--~~~~----------------------~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~ 472 (487)
++.+|+..... .+ .... .+.+.+ -..+||+.||.++|...+|.+.+ ++.
T Consensus 348 mePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 348 MEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLL 426 (439)
T ss_pred hhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHH
Confidence 99999875421 11 0000 011111 13469999999999999999997 589
Q ss_pred HHHHHHHHhchh
Q 011400 473 RYEKFNADYGSE 484 (487)
Q Consensus 473 ~y~~~~~~~g~~ 484 (487)
+.++|.++||.|
T Consensus 427 k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 427 KHEKFTEDFGQE 438 (439)
T ss_pred HHHHHHHhhccC
Confidence 999999999986
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=389.84 Aligned_cols=250 Identities=40% Similarity=0.643 Sum_probs=232.2
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
-..+.|.++++||+|+++++++|+|.+.+|+.+|++|..+ +.||+|||||||||||||+||||+|++.+..|+.+.+++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 3457899999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.+|.|+..+.++.+|..|+.++||||||||||+++.+|.+. .+....-+++.-+||.+|||+...+ .|-||++||+
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR 299 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNR 299 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCC
Confidence 9999999999999999999999999999999999999998653 3344455778888999999997754 4889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
++.|||||+| ||++.|+||+|+.+.|.+||+.|.+++....+++++.+|+.++|+||+||.++|++|++.|+|+-.
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R-- 377 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR-- 377 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999622
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
..||++||.+|.+++..
T Consensus 378 ----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ----------------CeecHHHHHHHHHHHHh
Confidence 34899999999998754
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=409.73 Aligned_cols=290 Identities=33% Similarity=0.577 Sum_probs=260.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
.+..+..||.....|.++|+||+|+++++.+|..++.+|.++|+.|..+ +..|.|||||||||||||.||||+|+|.+.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 3445788999999999999999999999999999999999999999887 888999999999999999999999999999
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+|+.|.+.++.++|+|++++.++.+|..|+..+|||||+||+|+|++.|+... ...+.+++++||..|||+..+.+ |
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-V 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-e
Confidence 99999999999999999999999999999999999999999999999988654 56778999999999999976654 8
Q ss_pred EEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHH
Q 011400 347 FVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKE 420 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~--~~~~~~~~~l~~la~~t~--G~sg~dI~~L~~~ 420 (487)
+||++||+|+.+|+|++| ||+..+++++|+.++|.+||+.+.+ +.....+++++.||+.+. ||||+||..||++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 999999999999999999 9999999999999999999999998 666778999999999877 9999999999999
Q ss_pred HHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 421 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 421 A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
|+..|+++.+............. .....+|..||++|+++++||+++ +...|+..++.+|
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~--~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVR--SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHHHhhccccCccccee--eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 99999998776333221111110 012358999999999999999997 5799999999888
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=406.24 Aligned_cols=284 Identities=32% Similarity=0.549 Sum_probs=260.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
..+.|+++|+||+|++++|.+|.+.+.+|++++++|...+++..|||||||||||||.+|||+|.++...|++|.+.++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlVIatTn~p~ 356 (487)
.+|+|++|++++++|++|+..+|||||+||+|+++++|+..+...+...+++++||.+||++.. ....|+||++||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999998888889999999999999999976 667799999999999
Q ss_pred cccHHHHh--hccccccCCCC-CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 357 ELDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~P-d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t-~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
.||++|+| ||++.++++++ |.+.+..+|+...++.....++++.++|+.+ ..|||+|+..+|.+|++.|++|.+..
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999987 7778999999999999999999999999998 47999999999999999999999887
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
++....-. .+..+....|++|||.+++++.+||+++ ++..|+.....|.
T Consensus 903 ie~g~~~~-~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 903 IESGTISE-EEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhhccccc-cccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 76542211 1122334569999999999999999997 5799999888874
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=379.42 Aligned_cols=282 Identities=35% Similarity=0.536 Sum_probs=246.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..++++|+||+|++....+|.+++.. +++|+.|..+ +.|++|||||||||||||+||+++|+++++||+.+++.++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34578899999999999999999988 8899988776 899999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC---CCcEEEEEEeCCC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLP 355 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~VlVIatTn~p 355 (487)
.+.|+++++++.+|+.|+.+.|||+||||||++.++|.+.+ .+-.++++.+|+..||++... +..|+||++||+|
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999998754 344689999999999998654 5679999999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.||++|+| ||++.|.+..|+..+|.+||+.++++.....+.++..||+.|.||.|+||.+||.+|+..|++|..+..
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~ 419 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQS 419 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999988744
Q ss_pred hc--hh----cc-----CCC-----------------------------C----CCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 434 EG--RQ----EV-----APD-----------------------------D----ELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 434 e~--~~----~~-----~~~-----------------------------d----~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
+. .. +. ... + +....-.|+.+||++|+..+|||+..
T Consensus 420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR 499 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR 499 (802)
T ss_pred cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence 31 00 00 000 0 11122358999999999999999987
Q ss_pred h---HHHHHHHHHHhchh
Q 011400 470 H---AHRYEKFNADYGSE 484 (487)
Q Consensus 470 ~---~~~y~~~~~~~g~~ 484 (487)
+ ...-..|.+..+.+
T Consensus 500 EGF~tVPdVtW~dIGaL~ 517 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALE 517 (802)
T ss_pred ccceecCCCChhhcccHH
Confidence 6 35556777766654
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=357.88 Aligned_cols=283 Identities=40% Similarity=0.681 Sum_probs=252.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
...-.++|+||+|++.++++|++.+.+|+++|++|... ..|++|||||||||||||++|+++|++.+..|+.|+.+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 34456889999999999999999999999999999543 8899999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC-cEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~VlVIatTn~p 355 (487)
.++|.|++++.++.+|..|...+|+||||||+|++...| ...+++....+.++|...+||+..... .|+|+++||+|
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 999999999999999999999999999999999999998 367899999999999999999965554 79999999999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL-- 433 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l-- 433 (487)
.++|+|++||+..++++++|+.++|.+||+-+++......++|+..+|+.|+||||+||.++|+.|+..++|..+..-
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred -hchh-ccCCCCCC------CCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhch
Q 011400 434 -EGRQ-EVAPDDEL------PQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGS 483 (487)
Q Consensus 434 -e~~~-~~~~~d~~------~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~ 483 (487)
.... ........ -..++++++||.+|+..+-++...+ ....+.|++.||.
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 0111 01100111 1257899999999999999886643 6889999999985
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=349.41 Aligned_cols=288 Identities=51% Similarity=0.812 Sum_probs=258.0
Q ss_pred HHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 190 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+.+..++....+.+.|+|+.|++.+|+.+.+.+.+|..++..|..+..+.+++||.||||+|||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 44677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 348 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlV 348 (487)
.++++++.++|+|++++.++.+|..|+..+|+|+||||+|+++.+|. ..+++..+++..+++..+++... ...+|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 45677788999999999998854 4458999
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
|+|||.||.+|++++|||..++++|+|+.+.|..+|+.++...... .+.+++.+++.|+||+++||.++|++|++...+
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999887433 456789999999999999999999999999988
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchh
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSE 484 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~ 484 (487)
...... ..+.. .....++|+..||+.+++.++|+++.. ...|.+|+..||+.
T Consensus 374 ~~~~~~--~~~~~---~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 374 ELGGTT--DLEFI---DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hcccch--hhhhc---chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 754420 01111 112347799999999999999999975 89999999999984
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.44 Aligned_cols=288 Identities=41% Similarity=0.651 Sum_probs=251.1
Q ss_pred hhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 194 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++.....|.++|+|++|++.+|+.|.+.+.+|+.+++.+... ..+++++|||||||||||++|+++|++++.+|+.++
T Consensus 440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 440 IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3455556788999999999999999999999999999998875 788899999999999999999999999999999999
Q ss_pred cccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 273 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 273 ~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
++++.++|+|++++.++.+|..|+...||||||||+|.+++.++... ......+++++|+..||++... ..++||+||
T Consensus 520 ~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aT 597 (733)
T TIGR01243 520 GPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAAT 597 (733)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeC
Confidence 99999999999999999999999999999999999999998876432 3445678999999999998654 458899999
Q ss_pred CCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 353 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 353 n~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+|+.+|++++| ||+..+++++|+.++|.+||+.+..+.....+.+++.+|+.|+||+|+||..+|++|+..++++..
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999999999999888888889999999999999999999999999999999876
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhch
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGS 483 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~ 483 (487)
....................|+++||.+|+++++||++++ ...|++|.+.|+.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 678 GSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 4322111100000111234699999999999999999975 7999999999974
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.85 Aligned_cols=241 Identities=34% Similarity=0.554 Sum_probs=220.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.+++|+|+-|++++|++|+|.+.. ++.|+.|.++ ..-|+||||.||||||||+|||++|.|.+.||++.+++++-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 367899999999999999997755 7788888877 78899999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
+|...+.++.+|..|+..+||||||||||++.++|.... ....++++++||..|||+.... .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~--~~y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD--QHYAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH--HHHHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999987543 2377999999999999997665 4889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
||.| ||+++|.+|.||..-|.+||+.|+.+.....++|...||+-|.||+|+||.+|++.|+..|...-
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 9999 99999999999999999999999999999999999999999999999999999999998876531
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
...||+.|++.|-.++-
T Consensus 526 ---------a~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 526 ---------AEMVTMKHLEFAKDRIL 542 (752)
T ss_pred ---------cccccHHHHhhhhhhee
Confidence 13489999999887763
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=307.49 Aligned_cols=246 Identities=33% Similarity=0.470 Sum_probs=215.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
..++++|+|++|++++|+..+-+ ...+..|+.|..+ .|++||||||||||||++|+++|++.+.|++.+++.++.+.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLI-MEYLENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHH-HHHhhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 34678899999999999987654 4557889988887 46899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
++|...+.++.+++.|+..+|||+||||+|+++-+|.-+.. .+.-..++|.||..|||+... ..|+.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel-RGDVsEiVNALLTelDgi~en-eGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL-RGDVSEIVNALLTELDGIKEN-EGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh-cccHHHHHHHHHHhccCcccC-CceEEEeecCChhhcC
Confidence 99999999999999999999999999999999988764332 223467899999999999854 4588999999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhchhc
Q 011400 360 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 360 ~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~-L~~~A~~~a~rr~~~~le~~~~ 438 (487)
+++++||...|+|.+|+.++|.+|++.+++..+...+.+++.+++.|.|+||+||.. +++.|.++|+..-
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--------- 339 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--------- 339 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc---------
Confidence 999999999999999999999999999999999999999999999999999999975 5566666665531
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
...|+.+||++|+++.++...
T Consensus 340 ---------~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 340 ---------REKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ---------hhhhhHHHHHHHHHhhccccC
Confidence 134899999999998776644
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=340.81 Aligned_cols=257 Identities=46% Similarity=0.725 Sum_probs=235.0
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcC-CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
++....+.++|+|++|++.+|+.+++.+.+++.+++.+.. .+.+++++|||||||||||++|+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4555788999999999999999999999999999998887 478889999999999999999999999999999999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.++|+|++++.++.+|..|+..+||||||||+|++.+.++..... ...+++++++.+++++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 99999999999999999999999999999999999999998754332 237899999999999876655 889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~--~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+.+|++++| ||+..+++++||.++|.+|++.++..... ..+.+++.+++.|+||+|+||..+|++|++.++++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999985554 4678899999999999999999999999999998753
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHH
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 477 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~~~y~~~ 477 (487)
...||.+||.+|+++++|++. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 145899999999999999988 8887
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=330.00 Aligned_cols=268 Identities=32% Similarity=0.587 Sum_probs=231.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
..+.|+||+|+.++|+.|.+.+.+|.+||.+|... ++.+.|||||||||||||+||.++|..++..|+.|.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34899999999999999999999999999999876 78889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.|.++..++.+|..|+..+|||||+||+|+++++|+. ...+...+++++|+.+|||...-. .|.|+++|.+|+.+|+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG~Egl~-GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDGAEGLD-GVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhccccccc-eEEEEEecCCccccCH
Confidence 9999999999999999999999999999999999874 345678999999999999997744 4889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
||+| |+++.++-++|+..+|.+|++.+........++|++.+|.+|+||+|+||..|+..|.+.|+.+.++.... ..
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~-~~ 897 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDE-EG 897 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCc-cc
Confidence 9999 99999999999999999999999988888889999999999999999999999999999999987653321 11
Q ss_pred cCCCCCCCCCCCCCHHHHHHHH--hccCCChhh-hHHHHHHHHHHh
Q 011400 439 VAPDDELPQIGPIRPEDVEIAL--KNTRPSAHL-HAHRYEKFNADY 481 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL--~~~~ps~~~-~~~~y~~~~~~~ 481 (487)
.. ..++...+.... ...+||.++ +...+++.+..|
T Consensus 898 ~~--------p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 898 VV--------PSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred cC--------CccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence 11 113333333333 466777776 344444444433
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=296.71 Aligned_cols=247 Identities=38% Similarity=0.620 Sum_probs=226.6
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.+.|.+++.|++|++-.|+++++.+.+|+.+.+++... +.||+|||+|||||||||+||+++|+.....|+.+.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 46789999999999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
.+|.|+..+.++.+|..|+.+.|+||||||+|+++.+|-+. .+....-++++-+|+++|||+.... +|-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEecCccc
Confidence 99999999999999999999999999999999999988653 3344456788889999999997654 478999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+|++++| |.++.|+||+||..+++-++..+..++....+++++.+..+-+..+++||..+|++|++.|+|...
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
-.|...||+++.+..-
T Consensus 382 --------------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred --------------eeeeHHHHHHHHHhhc
Confidence 2378899999987653
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=322.77 Aligned_cols=250 Identities=39% Similarity=0.641 Sum_probs=224.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|.++|+||+|++.+|++|++.+.+|+.+++++... +.+++++|||||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 346799999999999999999999999999999998876 7899999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|++++.++.+|..++...|+||||||+|.++.++.+.. .......+++.+++..++++.... .+.||++||++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~ 294 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRA 294 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCc
Confidence 9999999999999999999999999999999999988764322 122344577788999999875544 47889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..|++++|+.++|..||+.++.+.....+.+++.++..|+||+|+||.++|++|++.|+++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999999862
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
...|+.+||.+|++++...
T Consensus 371 --------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 --------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------CCccCHHHHHHHHHHHHhc
Confidence 1359999999999998654
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=295.97 Aligned_cols=253 Identities=37% Similarity=0.583 Sum_probs=228.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+.+..|..+++-++|++..++++++.+.+|.++|++|..+ +..|+|+|||||||||||.||+++|.+..+.|+.+++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4557788899999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+..+|.|+..+.++.+|-.|+.++|+|||.||||++...|.++.. ....-++..-+|++++||+.... ++-||.+||+
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk-nikvimatnr 295 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVIMATNR 295 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc-ceEEEEeccc
Confidence 999999999999999999999999999999999999998865332 23334556667899999997554 4778999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
.+-+|++++| |+++.|+||+|+.+.|.+||+.+.++.+....+++..+|....|.+|+++..+|++|.+.|+|+..
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr-- 373 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR-- 373 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999998522
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
..+|.|||+-|+.++-.-.+
T Consensus 374 ----------------vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 ----------------VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ----------------ccccHHHHHHHHHHHHhccc
Confidence 46999999999988754333
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=302.31 Aligned_cols=248 Identities=36% Similarity=0.607 Sum_probs=224.7
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.-++.|++|++..+++|++.+.+|+.+|++++.. +.||+||+|||+||||||.||+|+|+.....|+.+-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 346788899999999999999999999999999999876 9999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|+..+.++.+|..|..++|+|+||||||++..+|-+..+ .....++..-+||+++||+..++. |-||++||+.
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD-vKvimATnri 334 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVIMATNRI 334 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC-eEEEEecccc
Confidence 99999999999999999999999999999999999998864322 222334455588999999977655 7899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.|||+|.| |+++.|.|+.||...++.|+..+..++....+++++.+...-+.+||+||.++|.+|.+.|+|...
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR--- 411 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR--- 411 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+|++||.+|.+++-
T Consensus 412 ---------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 412 ---------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred ---------------hhccHHHHHHHHHHHH
Confidence 2389999999988764
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=334.38 Aligned_cols=246 Identities=38% Similarity=0.602 Sum_probs=221.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+.++|.|+.|++++|++|.|++.. +++|+.|..+ ...|+|+||+||||||||.||||+|.|.+.||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34568999999999999999998765 7788877766 899999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc--cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
.++|.....++.+|..|+.+.|||+||||||.+...|+. ...........+++|+..||++... ..|+|+++||+|+
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD 461 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence 999999999999999999999999999999999998842 2234455678999999999999766 5689999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
.+|+|++| ||++++++++|+...|.+|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+..
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~--- 538 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL--- 538 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence 99999999 999999999999999999999999888875 667788899999999999999999999999999632
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
..|+..||+.|++++.-
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVIA 555 (774)
T ss_pred ---------------CccchhhHHHHHHHHhc
Confidence 35899999999995543
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=293.06 Aligned_cols=249 Identities=34% Similarity=0.572 Sum_probs=226.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|...++||+|++..+++|.+++.+|+.+++.|..+ +.||+|+|+|||||||||.+||+.|.+.+..|..+-+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 456788899999999999999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+..|.|...+.++..|..|+...|+||||||+|.+..+|.++. ......++..-+|++++||++... .|-||++||+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~-~vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD-RVKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc-ceEEEeecccc
Confidence 9999999999999999999999999999999999999886432 222334555667889999997654 48899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+-+||+|+| |.++.|+||.|+.+.|..|++.+.+++....+++++++|+.|++|+|++..++|-+|++.|+||-.
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--- 397 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--- 397 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---
Confidence 999999998 999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
-.|+.+||.+.+.+++.
T Consensus 398 ---------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ---------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------ccccHHHHHHHHHHHHH
Confidence 23899999999988764
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=316.60 Aligned_cols=255 Identities=40% Similarity=0.604 Sum_probs=226.3
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.....|.++|+||+|+++++++|.+.+..|+.+++.|..+ +.++++||||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3456789999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+...|.|++++.++.+|..++...|+||||||+|.++..+.+... ......+.+..++..+++..... .+.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC-CEEEEEecCC
Confidence 999999999999999999999999999999999999887654322 12234556677888888775443 5889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
++.+|++++| ||+..+++++|+.++|.+||+.++.......+.++..+|..|+||+|+||..+|++|+..++++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999988888778899999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
...|+.+||.+|+.+++++...+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13489999999999999987654
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=320.56 Aligned_cols=255 Identities=24% Similarity=0.346 Sum_probs=218.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.+..+|+||+|++.+|+.+.+...... .......+.+++|+|||||||||||++|+++|++++.+++.++++.+.++|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 367889999999999999987553321 111223467889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
+|+++..++.+|..++..+||||||||||.++..+.. ..+.+...++++.|+..|++ ....|+||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999876433 23445668889999999884 3456899999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~--~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.+|+.|+||||+||+++|.+|+..+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999876533 4678999999999999999999999998877642
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh---hhHHHHHHHHHH
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD 480 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~---~~~~~y~~~~~~ 480 (487)
..++|.+||..|+++++|+.. +++..+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 135899999999999999853 357999999874
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=291.06 Aligned_cols=267 Identities=34% Similarity=0.552 Sum_probs=233.4
Q ss_pred HHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCC
Q 011400 171 ERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 249 (487)
Q Consensus 171 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~Gpp 249 (487)
..++.|+.|.... +++-...++.|.++++|++|+.+.++.|++.+..|+.+|+.|..+ +.||+|||+||||
T Consensus 149 yqi~lplppkidp--------svtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygpp 220 (435)
T KOG0729|consen 149 YQIQLPLPPKIDP--------SVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPP 220 (435)
T ss_pred eeEeccCCCCCCC--------ceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCC
Confidence 3455555555443 334344667899999999999999999999999999999999877 8999999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHH
Q 011400 250 GTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRL 328 (487)
Q Consensus 250 GtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i 328 (487)
|||||.+||++|+..+..|+.+-+++++.+|+|+..+.++.+|+.|+..+.||||+||||++.+.|-+. .......++.
T Consensus 221 gtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrt 300 (435)
T KOG0729|consen 221 GTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT 300 (435)
T ss_pred CCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987543 2223334555
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHh
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERT 406 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t 406 (487)
.-+|++++||+..++. +-|+.+||+|+.||++|+| |+++.++|.+||.+-|..|++.+.+.+....++-++-+|..+
T Consensus 301 mleli~qldgfdprgn-ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc 379 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC 379 (435)
T ss_pred HHHHHHhccCCCCCCC-eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC
Confidence 5678899999976654 7788999999999999999 999999999999999999999999999998899999999999
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..-+|++|+.+|.+|.+.|+|-.. ...|..||.+|+.++.
T Consensus 380 pnstgaeirsvcteagmfairarr------------------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 380 PNSTGAEIRSVCTEAGMFAIRARR------------------KVATEKDFLDAVNKVV 419 (435)
T ss_pred CCCcchHHHHHHHHhhHHHHHHHh------------------hhhhHHHHHHHHHHHH
Confidence 999999999999999999987321 2368999999998774
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=309.11 Aligned_cols=249 Identities=36% Similarity=0.574 Sum_probs=221.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|..+|+||+|++.++++|.+.+..++.+++++..+ +.+++++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 456788999999999999999999999999999998876 7889999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|+.+..++.+|..+....|+||||||+|.++.++..... ......+.+.+++..++++.... .+.||++||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 99999999999999999999999999999999999987643221 22233456677888888875443 47889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..|+|+.|+.++|.+||+.++.......+++++.++..++||+|+||..+|++|+..|+++-
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999987 99999999999999999999999988888888999999999999999999999999999998852
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
...|+.+||.+|++++..
T Consensus 409 --------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------CCccCHHHHHHHHHHHHh
Confidence 134899999999999754
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=313.68 Aligned_cols=245 Identities=38% Similarity=0.582 Sum_probs=222.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.....++|.|+.|.+++|+++.|.+.. ++.|..|..+ ...|+|+||+||||||||+|||++|.+.+.||+.++.++++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 346789999999999999999998765 5566655544 78899999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..|+|.....++.+|.+|+.++|||+||||+|++...|+.+ +..+....+++++|+..||++.. +..|+|+++||+|+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpd 299 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPD 299 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcc
Confidence 99999999999999999999999999999999999988533 44556667899999999999974 45688999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
-+|+||+| ||++++.++.||...|.+|++-+++......++++..+|+.|.||+|+|+.+++++|+..+.|+..
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
..|++.||.+|..++
T Consensus 376 --------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --------------KEITMRDIEEAIDRV 390 (596)
T ss_pred --------------eeEeccchHHHHHHH
Confidence 458999999999887
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=310.47 Aligned_cols=248 Identities=37% Similarity=0.573 Sum_probs=217.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...|.++|+||+|++++|+++.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999998765 6777766554 67889999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
+.+.|.+++.++.+|..++...|+||||||+|.+...++... ........+++.|+..||++.... .++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence 999999999999999999999999999999999998876432 223445678899999999886544 488999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+|++++| ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777677889999999999999999999999988776631
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
..+|+.+||..|+.++.+.
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhcc
Confidence 1359999999999987543
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=292.00 Aligned_cols=247 Identities=39% Similarity=0.636 Sum_probs=216.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.+.|+||+|+++++++|.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 346789999999999999999999999999999988776 7889999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
...+.|+....++.+|..++...|+||||||+|.+...+..... ......+.+..++..++++... ..+.||+|||++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 99999999999999999999999999999999999876543221 1223345667778888876444 358899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|+++++ ||+..++++.|+.++|.+|++.++.......+.+++.++..++||+|+||..+|++|+..|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999997 99999999999999999999999988777777889999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
...|+.+||.+|+.++
T Consensus 348 --------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 1349999999999875
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=292.24 Aligned_cols=272 Identities=29% Similarity=0.490 Sum_probs=217.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------- 267 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~------- 267 (487)
.+....|.++|+||+|++..++++++.+..|+.++++|... +.+++++|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34567799999999999999999999999999999998765 7889999999999999999999999998654
Q ss_pred ---EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 268 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 268 ---~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
|+.+..+++.++|.|++++.++.+|..++.. .|+||||||+|.++..++... .++..+.++++|+..||++.
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence 5677778889999999999999999988764 699999999999998875432 23345778899999999986
Q ss_pred CCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC----------CCCCHHHHHHH---
Q 011400 341 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE----------ESLPYDLLVER--- 405 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~----------~~~~l~~la~~--- 405 (487)
... .++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++...... ...++..+++.
T Consensus 330 ~~~-~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 330 SLD-NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred cCC-ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 543 58899999999999999998 999999999999999999999998642111 01112222221
Q ss_pred --------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 011400 406 --------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 459 (487)
Q Consensus 406 --------------------------t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~A 459 (487)
++.+||++|.++|.+|...++++.+.. ....|+.+|+..|
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~a 474 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLAA 474 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHHH
Confidence 455788888888888888888876521 1135899999999
Q ss_pred HhccCCChh--hhHHHHHHHHHHhch
Q 011400 460 LKNTRPSAH--LHAHRYEKFNADYGS 483 (487)
Q Consensus 460 L~~~~ps~~--~~~~~y~~~~~~~g~ 483 (487)
+......-. +-....++|.+.-|-
T Consensus 475 ~~~e~~~~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 475 VLDEFRESEDLPNTTNPDDWARISGK 500 (512)
T ss_pred HHHhhcccccCCCCCCHHHHhhhhCC
Confidence 987643322 224567789887654
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=294.19 Aligned_cols=256 Identities=34% Similarity=0.560 Sum_probs=232.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
+.+. ++++|+......+++.+.+|+.++..+... .++|+++|+|||||||||.+++++|++.+..++.++++++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999998776 89999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 281 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
.|++++.++..|+.+...+ |++|||||+|.+++++..... ..+++..+++.++|+... ..+++|+++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765332 678999999999999874 45688999999999999
Q ss_pred HHHHh-hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 360 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 360 ~aL~r-Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++++| ||+..+.+..|+..+|.+|++.+.+.+....+.++..+|..+.||+|+|+..+|++|+..+.++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999887899999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 485 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~ 485 (487)
+++||..|+..++||+..+ ...-..|.+..|-|.
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 6778888888888887765 344557777776653
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=272.06 Aligned_cols=247 Identities=34% Similarity=0.567 Sum_probs=221.4
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.....++|+.+.|+-.+..++.+.+..|+..|++|.+. +.+|.+++||||||||||++|+++|..++..|+.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567899999999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc-cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~-~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
++|.|++.+.++..|..|+...|||||+||||++.+.+.+ .......-++++.+|+++|+++... .+|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-HRVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-ccccEEEecCCcc
Confidence 9999999999999999999999999999999999988743 3334445567777888888888654 4588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.|+++|+| |+++.+++|+|+...|..|++.+..........+.+.+.+.++||.|+|++..|++|.+.+++...
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~---- 358 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER---- 358 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh----
Confidence 99999999 999999999999999999999998888888888899999999999999999999999988877422
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+-.|||.+++.++.
T Consensus 359 --------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 --------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred --------------HHHhHHHHHHHHHHHH
Confidence 2367899999988765
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=300.33 Aligned_cols=244 Identities=36% Similarity=0.580 Sum_probs=212.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+.++|+|++|++++|+++.+.+.. +..++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34678999999999999999997755 6667666554 677899999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
.+.|.....++.+|..++...||||||||+|.+...++.. ...+.....+++.|+..+|++... ..++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHh
Confidence 9999888899999999999999999999999998776532 223344567889999999988654 45889999999999
Q ss_pred ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011400 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 358 Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
+|++++| ||+..+.+++|+.++|.+||+.+++......+.++..+|..+.||+|+||..++++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988776777889999999999999999999999998877641
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 436 RQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 436 ~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
...||.+||++|+.++
T Consensus 408 ------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCCcCHHHHHHHHHHH
Confidence 1358999999999987
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=299.75 Aligned_cols=280 Identities=39% Similarity=0.582 Sum_probs=234.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++.+++.+.+.+.+++.+++.+..+ +.+++++|||||||||||++|+++|++++.+++.+++.++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 477899999999999999999999999999998876 7889999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
+.|.++..++.+|..+....|+||||||+|.+.+++.... .+...++.+.|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 234567889999999988554 4578899999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc--
Q 011400 360 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG-- 435 (487)
Q Consensus 360 ~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~-- 435 (487)
+++++ ||+..+.++.|+.++|.+||+.+........+.+++.+++.+.||+++|+..+|++|+..+++|.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 99999999999999999999999888777778889999999999999999999999999999987642111
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH---HHHHHHHHHhchh
Q 011400 436 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSE 484 (487)
Q Consensus 436 ~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~---~~y~~~~~~~g~~ 484 (487)
.....+.+. .....++.+||..|++.++|+...+. ..-..|.+..|.+
T Consensus 409 ~~~~i~~~~-~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~ 459 (733)
T TIGR01243 409 EAEEIPAEV-LKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLE 459 (733)
T ss_pred ccccccchh-cccccccHHHHHHHHhhccccccchhhccccccchhhcccHH
Confidence 011111111 12235899999999999999975431 2223555555433
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=299.71 Aligned_cols=265 Identities=34% Similarity=0.591 Sum_probs=228.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
....+.|++|+|++.++.+|+|.+..|+.||+.|..+ +.||+||||+||||||||+.|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 4467889999999999999999999999999999887 9999999999999999999999999988 356777788
Q ss_pred ccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 274 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
++..++|+|+.++.++.+|+.|+..+|+|+|+||||-|++.|.... ......++++||..|||+..++. |+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGldsRgq-VvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDSRGQ-VVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence 9999999999999999999999999999999999999999875432 23446788999999999987765 88999999
Q ss_pred CCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 354 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 354 ~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
+|+.+|++++| ||++.++|++|+.+.|.+|+..+..+...... .-++.+|+.+.||.|+||+.||.+|++.+++|.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999998 99999999999999999999999877664322 3367899999999999999999999999999876
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
..+........-+.. ...|..+||..|+.++.|+.+.
T Consensus 495 Pq~y~s~~kl~~d~~--~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVA--LIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred Ceeecccccccccch--hhhhhhHhhhhhhhccCCCCCc
Confidence 655544433322221 1238999999999999888665
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=277.80 Aligned_cols=274 Identities=28% Similarity=0.441 Sum_probs=225.9
Q ss_pred CCCCCCCc--ccCcHHH-HHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhC-CcEEEEeccc
Q 011400 201 SPDVKWES--IKGLENA-KRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASS 275 (487)
Q Consensus 201 ~~~~~~~d--i~G~e~~-k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~-~~~i~v~~~~ 275 (487)
.|.-+|++ |+|++.. -+..++++....-.|+..+++ +..-+|+|||||||||||.+||.|..-++ .+--.|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46666777 5788764 345566666666777777766 77789999999999999999999999996 4456789999
Q ss_pred chhhccCCcHHHHHHHHHHHHhc--------CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 276 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~--------~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
+.++|+|+++++++.+|..|... .-.||++||||+++..|++.....+....++++||.-|||+..-+ +++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEE
Confidence 99999999999999999988542 123999999999999999888888899999999999999997654 489
Q ss_pred EEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCC----CCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 348 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~----~~~~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
||+-||+.+.+|+||+| ||+.++++.+||+.-|.+|++.+.+++. ...++|++++|..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999876554 34688999999999999999999999999
Q ss_pred HhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHHH
Q 011400 422 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFN 478 (487)
Q Consensus 422 ~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~~~y~~~~ 478 (487)
...|+.|.+..- ......+... +...|+++||..||.+++|++-.....|+.+.
T Consensus 452 ~S~A~nR~vk~~-~~~~~~~~~~--e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 452 QSFAMNRHVKAG-GKVEVDPVAI--ENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhhhccC-cceecCchhh--hheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 999999987543 2222222221 22459999999999999999875544444443
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=285.83 Aligned_cols=247 Identities=34% Similarity=0.511 Sum_probs=214.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.....|+|+.|.+..++++.+.+... ..+..+... ...++|++|+||||||||+++++++++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 34567999999999999999988764 344444333 5667899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..++...||||||||+|.++..+... ...+....+++++|+..||++... ..++||+|||+|+.+
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~l 303 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVL 303 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhc
Confidence 999999999999999999999999999999999877542 223344567899999999988654 358899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||++.+.+++|+.++|.+||+.++.......+.++..+++.|.||+|+||.++|++|+..++++.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~------- 376 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------- 376 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 999998 99999999999999999999999998888888899999999999999999999999999987641
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~ 467 (487)
...|+.+||++|+.++.++.
T Consensus 377 -----------~~~i~~~d~~~a~~~v~~g~ 396 (644)
T PRK10733 377 -----------KRVVSMVEFEKAKDKIMMGA 396 (644)
T ss_pred -----------CCcccHHHHHHHHHHHhccc
Confidence 13589999999998886643
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=293.19 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=169.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc----------cC------------------------
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~----------~g------------------------ 282 (487)
+.+|+||||+||||||||+|||++|.++++||+.|+++++...+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 68899999999999999999999999999999999999988654 11
Q ss_pred -------CcH--HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--CCCCcEEEEEE
Q 011400 283 -------DSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 351 (487)
Q Consensus 283 -------~se--~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~VlVIat 351 (487)
..+ ..++.+|+.|+.++||||||||||+++.+.. ....+++|+..|++.. .....|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 122 2378899999999999999999999976511 1234788999999763 23456999999
Q ss_pred eCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhC--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 352 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 352 Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l--~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
||+|+.||+||+| ||++.|.++.|+..+|.+++..++ ++..... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887653 2333332 3578999999999999999999999999999
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
++.. ..|+.+||+.|+.++.+.
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 348999999999977544
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=247.70 Aligned_cols=220 Identities=19% Similarity=0.185 Sum_probs=162.9
Q ss_pred CCCCCCcc-cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESI-KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di-~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
...+|+.+ .|+--.+.-+...+.. +...-+....+.+|++++||||||||||++|+++|++++.+++.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~h-i~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVH-IAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHH-HHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34557777 4444444433333321 111111112368999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHH-HHHHHHHhcCCc-----------CCC
Q 011400 281 RGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSD 343 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~ 343 (487)
+|++++.++.+|..|+. .+||||||||||++++.+.+. ......++ ..+|+..+|+.. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999976 469999999999999987632 23333444 579999988631 234
Q ss_pred CcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLV 417 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L 417 (487)
..|+||+|||+|+.||++|+| ||+..+ ..|+.++|.+||+.+++..... ..++..|++.+.| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 569999999999999999999 999864 5899999999999999876554 4566667777666 344433344
Q ss_pred HHHHHhHHHH
Q 011400 418 SKEAAMQPLR 427 (487)
Q Consensus 418 ~~~A~~~a~r 427 (487)
..++...-+.
T Consensus 344 yd~~v~~~i~ 353 (413)
T PLN00020 344 YDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=223.82 Aligned_cols=280 Identities=21% Similarity=0.165 Sum_probs=206.4
Q ss_pred CCccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC
Q 011400 157 GSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~ 236 (487)
.++...+++++|+++.++.||.........-..++.+. -.|+.|++++|+++.|.+.........
T Consensus 284 ~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iL-----------d~dHYGLekVKeRIlEyLAV~~l~~~~---- 348 (782)
T COG0466 284 PMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKIL-----------DKDHYGLEKVKERILEYLAVQKLTKKL---- 348 (782)
T ss_pred CCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHh-----------cccccCchhHHHHHHHHHHHHHHhccC----
Confidence 34568899999999999999988877766666666665 478999999999999999776544332
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
...-+||+||||+|||+|+++||+.+++.|+.++...+.+ .|+|.....+-+-+..+....| +++|||
T Consensus 349 --kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDE 425 (782)
T COG0466 349 --KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDE 425 (782)
T ss_pred --CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeec
Confidence 2245899999999999999999999999999999877654 3889999999888999999888 999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC------------CCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
||++..+....+. +.||+.+|.-++ .-..|++|+|+|..+.++.+|++|+ .+|.++-+
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgY 495 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGY 495 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCC
Confidence 9999876443222 236666663322 2256999999999999999999999 45999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCC-CCCCH
Q 011400 376 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQI-GPIRP 453 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~-~~It~ 453 (487)
+.+|..+|.+.|+-....... ..-.+ ...++..--.-|+.++++|+.+.++|.+..+.+............. ..|+.
T Consensus 496 t~~EKl~IAk~~LiPk~~~~~gL~~~e-l~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~ 574 (782)
T COG0466 496 TEDEKLEIAKRHLIPKQLKEHGLKKGE-LTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDE 574 (782)
T ss_pred ChHHHHHHHHHhcchHHHHHcCCCccc-eeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCH
Confidence 999999999999844332111 00000 0111111123466778899999999988877665432111111112 36899
Q ss_pred HHHHHHHhccCC
Q 011400 454 EDVEIALKNTRP 465 (487)
Q Consensus 454 eD~~~AL~~~~p 465 (487)
.++.+.|...+-
T Consensus 575 ~~l~~yLG~~~f 586 (782)
T COG0466 575 KNLKKYLGVPVF 586 (782)
T ss_pred HHHHHHhCCccc
Confidence 999999986553
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=214.70 Aligned_cols=250 Identities=20% Similarity=0.192 Sum_probs=184.9
Q ss_pred CccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCC
Q 011400 158 STCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLL 237 (487)
Q Consensus 158 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~ 237 (487)
+++.-.+.+||+++....||-....+...-..++.+. -+|++|++++|+++.|++..-..+..
T Consensus 373 ~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iL-----------deDHYgm~dVKeRILEfiAV~kLrgs------ 435 (906)
T KOG2004|consen 373 SSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEIL-----------DEDHYGMEDVKERILEFIAVGKLRGS------ 435 (906)
T ss_pred cccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhh-----------cccccchHHHHHHHHHHHHHHhhccc------
Confidence 3456678899999999999977766554444454444 47999999999999999977554333
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
..++-++|+||||+|||+++++||..+|+.|+.++...+.+ .|+|....++-+.++......| +++|||+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEv 514 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEV 514 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehh
Confidence 23455899999999999999999999999999999876653 3889999999999999998887 9999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------------CCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLT------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd 376 (487)
|++...-+. ..+ +.||+.+|... -.-..|++|||+|..+.|+++|++|++ .|.++-+.
T Consensus 515 DKlG~g~qG--DPa-------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv 584 (906)
T KOG2004|consen 515 DKLGSGHQG--DPA-------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYV 584 (906)
T ss_pred hhhCCCCCC--ChH-------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCcc
Confidence 999843222 111 23556655332 223569999999999999999999995 49999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011400 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 377 ~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
.+|..+|.+.||-........--.+-++..+...-.-|+.+|++|+.+++.|.+..+.+
T Consensus 585 ~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 585 AEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999855433211111111222222233457778888888888777665543
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=199.56 Aligned_cols=251 Identities=24% Similarity=0.339 Sum_probs=180.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcH-HH--HHHHHHHh-----hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhh
Q 011400 162 NGVLANVINERLQKPLLPNFDSA-ET--RALAESLC-----RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 233 (487)
Q Consensus 162 ~~~~~~~~~~~~~k~~~~~~~~~-~~--~~~~~~~~-----~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~ 233 (487)
..+.+.+++.++++|.+---.+- .. ....+.+. .......++-.|++|+-...++++|..+....-. ....
T Consensus 302 ~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaN-TK~h 380 (630)
T KOG0742|consen 302 TLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATAN-TKKH 380 (630)
T ss_pred chhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcc-cccc
Confidence 45788899999999854321110 00 00000111 1112234556699999999999999886644322 1111
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHH
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAII 312 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~ 312 (487)
-.|-++||||||||||||++|+.||...|..+..+.+.++..... +.-..+..+|+-++. ...-+|||||+|.++
T Consensus 381 ---~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 381 ---QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred ---cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch-HHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 246689999999999999999999999999999999888754432 344567788877765 345689999999999
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
..|.. ...++..+..++.||..-.+ ....++++.+||+|.++|.++-+||+..++||+|..++|..+|..|+.++.
T Consensus 457 ceRnk-tymSEaqRsaLNAlLfRTGd---qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 457 CERNK-TYMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred HHhch-hhhcHHHHHHHHHHHHHhcc---cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 98754 44567778889998876652 233466778999999999999999999999999999999999999885443
Q ss_pred CCC-----------------------C----CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 393 GEE-----------------------S----LPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 393 ~~~-----------------------~----~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
... . ..+.+.|+.|+||||++|..|+.-.
T Consensus 533 ~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 533 LKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred cCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 210 0 0145688999999999999887643
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=198.81 Aligned_cols=215 Identities=20% Similarity=0.250 Sum_probs=158.7
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCC-C---CCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL-L---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~---~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
+++++|++.+|++|.+++.+.. .++..... . .++.+++|+||||||||++|+++|+.+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 4689999999999999886633 33333222 2 234569999999999999999999976 2368999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.+.|.|+++.....+++.+. ++||||||+|.+...+. ...........|+..|+... ..++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~~---~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQR---DDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcCC---CCEEEEEeCCc
Confidence 9999999998888888887764 38999999999865322 12234667788888887432 33666666653
Q ss_pred CC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHH------hcCCc-HHHHHHHHHHH
Q 011400 355 PW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEA 421 (487)
Q Consensus 355 p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~------t~G~s-g~dI~~L~~~A 421 (487)
.. .+++++++||+..+.|+.|+.+++.+|++.++.......... ...+... ...|. ++++++++..+
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 21 246899999999999999999999999999997655432222 2223332 13344 79999999999
Q ss_pred HhHHHHHHHH
Q 011400 422 AMQPLRRLMV 431 (487)
Q Consensus 422 ~~~a~rr~~~ 431 (487)
..+...|+..
T Consensus 251 ~~~~~~r~~~ 260 (287)
T CHL00181 251 RMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHc
Confidence 9988888764
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=194.75 Aligned_cols=214 Identities=18% Similarity=0.185 Sum_probs=155.5
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCC---CCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 275 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~---~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~ 275 (487)
+++++|++.+|++|.+.+.++.........+ .+...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999988776543333332 2334679999999999999999999875 24788999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.|+|++...++.+|..+. ++||||||+|.|.... +.......++.|+..++.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999999999988764 4899999999996421 1122355677788888743 2234444444322
Q ss_pred -----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhc---------CCcHHHHHHHHHH
Q 011400 356 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTE---------GYSGSDIRLVSKE 420 (487)
Q Consensus 356 -----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~---------G~sg~dI~~L~~~ 420 (487)
..+++++++||...+.++.++.+++.+|++.++.......+.+ ++.+++... .-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999988899999999999999999987654432222 344433221 2356778888888
Q ss_pred HHhHHHHHHH
Q 011400 421 AAMQPLRRLM 430 (487)
Q Consensus 421 A~~~a~rr~~ 430 (487)
|......|.+
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 7777666654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=193.85 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=167.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC-CC---CCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEeccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~---~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~v~~~~ 275 (487)
++++|++++|++|.+++.+.. .++.+.. .+ .+..+++|+||||||||++|+++|+.+. .+++.+++.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 369999999999999887733 3333332 22 3456899999999999999999998772 3799999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.+.|+++..+..+|+.+.. ++|||||++.+...+.+ ......+.+.|+..|+.. ...++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 9999999988888888887643 89999999998643221 223456777888888733 2346666666543
Q ss_pred --C---cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHh------cC-CcHHHHHHHHHHHH
Q 011400 356 --W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------EG-YSGSDIRLVSKEAA 422 (487)
Q Consensus 356 --~---~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t------~G-~sg~dI~~L~~~A~ 422 (487)
+ .+++++++||...+.|+.++.+++..|++.++.......+.+ ++.+.... +. -+++++++++..+.
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 2 258999999999999999999999999999997754332222 23333331 11 24788999999998
Q ss_pred hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 011400 423 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 459 (487)
Q Consensus 423 ~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~A 459 (487)
.....|+..... ...+.+ ....|+.+|+..+
T Consensus 251 ~~~~~r~~~~~~---~~~~~~---~~~~~~~~d~~~~ 281 (284)
T TIGR02880 251 LRQANRLFCDLD---RVLDKS---DLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHhcCcC---CCCCHH---HHhCCCHHHHhhc
Confidence 887777654211 111111 1245788887654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=190.73 Aligned_cols=184 Identities=30% Similarity=0.444 Sum_probs=151.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhc--CCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~--~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~~~ 274 (487)
|+.++--..+|++|...+...+...+... .++.-.+-+||+||||||||+|+|++|+.+. ..++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 88888888999999998876665554322 2345556799999999999999999999883 457899999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhc---CC--cEEEechhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHH---AP--STIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~---~p--~IL~IDEiD~L~~~r~~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
.+.++|.+++.+.+..+|.+.... .. ..++|||+++|...|... ..+....-++++.++.++|.+... .+|+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nvl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNVL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCEE
Confidence 999999999999999999887653 12 256789999999988532 334445678999999999988654 4588
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
+++|+|-.+.+|.|+.+|-+...++++|+...+.+|++.++.+
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=169.96 Aligned_cols=130 Identities=41% Similarity=0.662 Sum_probs=117.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchh
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+...+.+..+|..+.... |+||||||+|.+.+.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 699999999999999999999999999999999998999999999999999999887 9999999999999886 2234
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHH-hhccccccCCC
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 374 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~-rRf~~~i~~~~ 374 (487)
......+.+.|+..++........++||++||.++.++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 556678889999999988777677999999999999999999 99999988764
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=202.95 Aligned_cols=240 Identities=21% Similarity=0.249 Sum_probs=195.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
...+||+|+||||||++++++|+++|++++.++|.++.+...+.++..+..+|..++...|+|||+-++|.+..++.+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-- 508 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-- 508 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC--
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999855432
Q ss_pred hhhHHHHHHHHHHHHH--hcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 011400 320 SEHEASRRLKTELLIQ--MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL 397 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~--ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~ 397 (487)
....++...+-.. .+....+...++||++++..+.+++.+++-|..++.++.|+.++|.+||+.++.......++
T Consensus 509 ---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v 585 (953)
T KOG0736|consen 509 ---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV 585 (953)
T ss_pred ---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH
Confidence 2223333333222 34445566779999999999999999999999999999999999999999999999988889
Q ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch--hccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH----
Q 011400 398 PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR--QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---- 471 (487)
Q Consensus 398 ~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~--~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~---- 471 (487)
.+..+|.+|.||+.+|+..++......+..+..+..... .+............++++||.+|+.++|...+..+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 999999999999999999999998666665554433111 11112223344567999999999999998877653
Q ss_pred HHHHHHHHHhchh
Q 011400 472 HRYEKFNADYGSE 484 (487)
Q Consensus 472 ~~y~~~~~~~g~~ 484 (487)
.+-..|.+..|-|
T Consensus 666 IPnV~WdDVGGLe 678 (953)
T KOG0736|consen 666 IPNVSWDDVGGLE 678 (953)
T ss_pred CCccchhcccCHH
Confidence 5566888888765
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=191.90 Aligned_cols=225 Identities=23% Similarity=0.349 Sum_probs=175.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCC-eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccC
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 282 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~-~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g 282 (487)
-+|+.++-..+.|++|.+.+..+....+++.+...++ ||.|||||||||||+++.|+|++++..++.+..++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 6788999999999999999999999999999887676 68999999999999999999999999999998877632
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch---hh--HHHHHHHHHHHHHhcCCcCCC-CcEEEEEEeCCCC
Q 011400 283 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS---EH--EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLPW 356 (487)
Q Consensus 283 ~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~---~~--~~~~~i~~~Ll~~ld~~~~~~-~~VlVIatTn~p~ 356 (487)
... ++.++..+... +||+|+|||.-+.-+..... .. .....+++.||+.+||+.... .--+||.|||.++
T Consensus 274 -n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 222 66666554443 79999999987653322111 11 124567889999999996544 3455788999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHHH
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRRL 429 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G--~sg~dI~~-L~~~--A~~~a~rr~ 429 (487)
.|||||+| |++.+|+++.-+.++-+.++..++.... .+.-++++.+..++ .||+|+.. ++.. .+..+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999 9999999999999999999999996533 23335556666555 59999975 3333 577888888
Q ss_pred HHHhhchhc
Q 011400 430 MVLLEGRQE 438 (487)
Q Consensus 430 ~~~le~~~~ 438 (487)
++.++....
T Consensus 428 v~~l~~~~~ 436 (457)
T KOG0743|consen 428 VEALESKKE 436 (457)
T ss_pred HHHHHhhhh
Confidence 877765543
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=196.02 Aligned_cols=219 Identities=23% Similarity=0.278 Sum_probs=175.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+.++||+||+|||||.||+++++++. .++..++|+.+.........+.+..+|..+.+++|+||++|++|.|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3446899999999999999999999884 567789999998777777888899999999999999999999999998
Q ss_pred hhcccchhhH-HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCC
Q 011400 314 QRGEARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 314 ~r~~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
...+..++.. ...++...+-+.+..+...+..+.+|++.+....+++.|.+ +|+.++.++.|+..+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 4333223333 33444443435555556667778999999999999998887 89999999999999999999999877
Q ss_pred CCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 391 QTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 391 ~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.... ...+++-++..|+||...|+..++.+|...++...+. .....+|.++|.++|+.+.|....
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris--------------~~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS--------------NGPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc--------------cCcccchHHHHHHHHHhcChHHhh
Confidence 6532 2345677999999999999999999999998854321 111258999999999999998775
Q ss_pred h
Q 011400 470 H 470 (487)
Q Consensus 470 ~ 470 (487)
.
T Consensus 655 ~ 655 (952)
T KOG0735|consen 655 G 655 (952)
T ss_pred h
Confidence 4
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=208.80 Aligned_cols=202 Identities=23% Similarity=0.193 Sum_probs=148.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCC
Q 011400 159 TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~ 238 (487)
+...++.+++++.....||............++... -++++|++.+|+.+.+++........ .
T Consensus 283 ~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l-----------~~~~~G~~~~k~~i~~~~~~~~~~~~------~ 345 (775)
T TIGR00763 283 SSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEIL-----------DEDHYGLKKVKERILEYLAVQKLRGK------M 345 (775)
T ss_pred CchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHh-----------hhhcCChHHHHHHHHHHHHHHHhhcC------C
Confidence 356778899999999999876544322222222211 35699999999999998866543221 1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch---------hhccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~---------~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...++||+||||||||++|+++|+.++.+++.++++.+. ..|.|.....+...|..+....| ||||||||
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEid 424 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEID 424 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechh
Confidence 234799999999999999999999999999999876542 24677777777778877766665 89999999
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCC------------cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCH
Q 011400 310 AIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 377 (487)
Q Consensus 310 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ 377 (487)
.+.++.+.. ..+.|+..+|.. ......+++|+|||.++.+++++++||. .+.++.|+.
T Consensus 425 k~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~ 494 (775)
T TIGR00763 425 KIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTE 494 (775)
T ss_pred hcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCH
Confidence 998643211 123455555521 1112468889999999999999999995 689999999
Q ss_pred HHHHHHHHHhC
Q 011400 378 EARRAMFESLL 388 (487)
Q Consensus 378 eeR~~IL~~~l 388 (487)
+++.+|++.++
T Consensus 495 ~e~~~I~~~~l 505 (775)
T TIGR00763 495 EEKLEIAKKYL 505 (775)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=168.50 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=122.6
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.++.+|+|++|+++++..+.-++.....+. .+..++|||||||+||||||+.||++++.++..+++..+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 456789999999999999987775543322 23468999999999999999999999999999988765421
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-----CC----------Cc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----SD----------EL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-----~~----------~~ 345 (487)
...+..++.... ...|||||||+.+... ....|+..|++..- .+ .+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 122333343332 3479999999998543 33447777775321 11 24
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVS 418 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G~sg~dI~~L~ 418 (487)
.-+|++|++...+.++|++||.....+..++.++..+|++.........-+. ...++|.++.|- ++-...++
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll 222 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLL 222 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHH
Confidence 6678999999999999999999988999999999999999887665554332 256688888874 44333333
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=193.38 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=167.9
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+... ...+++|+||||||||++|+++|+.+
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~ 231 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGK 231 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 34456666666667778999999999999888776432 34679999999999999999999987
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+..++.++++.+. .+|.|+.++.++.+++.+....|+||||||+|.|.+.......... ..+.|...+
T Consensus 232 ~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l 307 (731)
T TIGR02639 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPAL 307 (731)
T ss_pred CchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHH
Confidence 7789999988887 4789999999999999998878899999999999876432221111 222233333
Q ss_pred cCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-----CCCCHHHHHHHh
Q 011400 337 DGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-----~~~~l~~la~~t 406 (487)
. .+.+.+|++||.. ...|+++.|||. .+.++.|+.+++.+||+......... .+..+..++..+
T Consensus 308 ~-----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 308 S-----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELS 381 (731)
T ss_pred h-----CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhh
Confidence 2 2347788888863 357999999997 59999999999999999776543221 122345566666
Q ss_pred cCCcHHH-----HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EGYSGSD-----IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G~sg~d-----I~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..|-+.. --.++.+|+... + ..+.. .....|+.+|+..++..+.
T Consensus 382 ~ryi~~r~~P~kai~lld~a~a~~--~----------~~~~~--~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 382 ARYINDRFLPDKAIDVIDEAGASF--R----------LRPKA--KKKANVSVKDIENVVAKMA 430 (731)
T ss_pred hcccccccCCHHHHHHHHHhhhhh--h----------cCccc--ccccccCHHHHHHHHHHHh
Confidence 6554321 122333333210 0 00000 0124589999999999884
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=169.58 Aligned_cols=212 Identities=17% Similarity=0.129 Sum_probs=143.8
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
+|++++|++++++.|..++......+ ..+.+++|+||||||||++|+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 58999999999999999885433221 24567999999999999999999999998877665443211
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCCcEEEE
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 349 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~VlVI 349 (487)
...+...+... ..+.+|||||+|.+..... ..|+..+++.. .....+.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11222222222 3457999999999864321 11333332111 111236788
Q ss_pred EEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011400 350 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 350 atTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
++|+++..+++++++||...+.++.|+.++..++++..+.......+ ..++.+++.+.|+. +.+..++..++..+...
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR 212 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc
Confidence 89999999999999999888899999999999999988765443322 33677888888866 55566666554332211
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 429 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 429 ~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
....|+.+++..++..+
T Consensus 213 ------------------~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 213 ------------------GQKIINRDIALKALEML 229 (305)
T ss_pred ------------------CCCCcCHHHHHHHHHHh
Confidence 01236777777777764
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-18 Score=171.08 Aligned_cols=212 Identities=26% Similarity=0.357 Sum_probs=141.0
Q ss_pred CCCCCCCcccCcHHHH---HHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k---~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
-++.+++|++|+++.. +-|...+.. ....+++|||||||||||+|+.||+..+.+|..+++..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 3567799999999876 345555533 23367999999999999999999999999999998754
Q ss_pred hhccCCcHHHHHHHHHHHHhcC----CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 278 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~----p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
...+.++.+++.++... -.|||||||+.+-...+ ..||-.++ .+..++|-+||.
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-------------D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-------------DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-------------hhhhhhhc----CCeEEEEeccCC
Confidence 35577888998886543 36999999999864432 23666665 334444445555
Q ss_pred CC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC--CCC-CCC-----CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 354 LP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--TGE-ESL-----PYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 354 ~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~--~~~-~~~-----~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+| ..+++++++|. .++.+.+.+.++..+++...+... ... ..+ .++.++..+. +
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----------------G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----------------G 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----------------c
Confidence 55 68999999999 458888889999998888843222 221 011 1233333333 3
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 425 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 425 a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
..|++++.+|.......... .++.+++++.+.+-.+.....
T Consensus 205 D~R~aLN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk~ 245 (436)
T COG2256 205 DARRALNLLELAALSAEPDE-----VLILELLEEILQRRSARFDKD 245 (436)
T ss_pred hHHHHHHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCCC
Confidence 33444444443332221111 345888888888877665544
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=169.28 Aligned_cols=219 Identities=18% Similarity=0.127 Sum_probs=151.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.++.+|++++|.++.++.+...+...... ..++.+++|+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 34568999999999999999888543221 13567899999999999999999999999988777655432
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCCc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 345 (487)
....+..++... ..++||||||+|.+..... +.+...++... .....
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-------------EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH-------------HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122333444332 3468999999999854311 11222332110 01123
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+.+|++|+++..+++++++||...+.++.|+.+++.+|++..........+ ..++.+++.+.|.. +.+..+++.+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 667889999999999999999888999999999999999988766554432 23677888888865 5555566554433
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 425 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 425 a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
+..+ ....|+.+++..++..+...
T Consensus 230 a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 230 AQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 3221 11247888888888776544
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=184.27 Aligned_cols=268 Identities=18% Similarity=0.175 Sum_probs=178.2
Q ss_pred CCccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC
Q 011400 157 GSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~ 236 (487)
..++..++.++|+++.+..||.....+......++.+. -.+++|++++|+++.+++........
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l-----------~~~~~g~~~vK~~i~~~l~~~~~~~~----- 346 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEIL-----------DTDHYGLERVKDRILEYLAVQSRVNK----- 346 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHh-----------hhhccCHHHHHHHHHHHHHHHHhccc-----
Confidence 34567889999999999999987766654444444443 35699999999999998875433221
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
.....++|+||||+|||++++.+|+.++.+++.++.+...+ .|.|.....+...+..+....| ||+|||
T Consensus 347 -~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDE 424 (784)
T PRK10787 347 -IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDE 424 (784)
T ss_pred -CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEC
Confidence 13346999999999999999999999999999998765432 3556665666555665554554 899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
+|.+....+. ...+.|+..+|.- ...-+.+++|+|+|.. .++++|++||. .+.+..+
T Consensus 425 idk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~ 493 (784)
T PRK10787 425 IDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGY 493 (784)
T ss_pred hhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCC
Confidence 9999764321 1234467766631 1122568899999886 59999999995 5899999
Q ss_pred CHHHHHHHHHHhCCCCC-----CC-C--CCC---HHHHHHH-hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCC
Q 011400 376 DTEARRAMFESLLPSQT-----GE-E--SLP---YDLLVER-TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 443 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~-----~~-~--~~~---l~~la~~-t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d 443 (487)
+.++..+|++.++.... .. . ..+ ++.+++. +..+-.+.|+.++...+...+.+.+. .
T Consensus 494 t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~--~--------- 562 (784)
T PRK10787 494 TEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLL--D--------- 562 (784)
T ss_pred CHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHh--c---------
Confidence 99999999999884211 11 1 111 2333321 22222344555444443333333210 0
Q ss_pred CCCCCCCCCHHHHHHHHhccC
Q 011400 444 ELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 444 ~~~~~~~It~eD~~~AL~~~~ 464 (487)
.......|+.+++.+.|..-+
T Consensus 563 ~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 563 KSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred CCCceeeecHHHHHHHhCCCc
Confidence 011224699999999998543
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=159.63 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=138.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
-++..|+|.+|++++|++|.-++.....+.+ ..-|+|||||||.||||||+.+|+++|..+-..++..+.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e-------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE-------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCC-------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc---
Confidence 3566799999999999999999877665543 446899999999999999999999999999888877662
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC---------------CCCc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDEL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~~ 345 (487)
-...+-.++.... ..+|||||||+.+.+. +..-|+..|+++.- .-.+
T Consensus 90 ---K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 ---KPGDLAAILTNLE--EGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---ChhhHHHHHhcCC--cCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2233334443322 3479999999999654 22235556654321 1134
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcCCcH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSG 411 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G~sg 411 (487)
.-+|++|.+...+..+|++||.....+..++.++..+|+...........+. ....+|+++.|-..
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 6678999999999999999999999999999999999999987655554332 35668888887543
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=171.70 Aligned_cols=224 Identities=42% Similarity=0.611 Sum_probs=195.4
Q ss_pred cccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 226 PIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 226 ~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
++.+++.+... ..++++++++||||||||+++++++++ +..+..++.....+++.|.++..++.+|..+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 34455555544 788899999999999999999999999 7666888899999999999999999999999999999999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHH
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRA 382 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~ 382 (487)
+||+|.+.+.+.. ........+..+++..+++.. ... +++++.+|.+..+++++++ ||+..+.+..|+...+.+
T Consensus 82 ~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 82 IDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred echhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 9999999998766 445566888999999999998 666 8889999999999999988 999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 383 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 383 IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
++...........+.++..++..+.|++++++..+++++...+++|.. ........++.+|+.+++++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------------~~~~~~~~~~~~~~~~~l~~ 225 (494)
T COG0464 158 ILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------------DLVGEYIGVTEDDFEEALKK 225 (494)
T ss_pred HHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------------ccCcccccccHHHHHHHHHh
Confidence 999988777777788899999999999999999999999999998864 00112244899999999999
Q ss_pred cCCC
Q 011400 463 TRPS 466 (487)
Q Consensus 463 ~~ps 466 (487)
+.|+
T Consensus 226 ~~~~ 229 (494)
T COG0464 226 VLPS 229 (494)
T ss_pred cCcc
Confidence 9886
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-17 Score=180.47 Aligned_cols=240 Identities=22% Similarity=0.282 Sum_probs=169.2
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++......-+++.++|.+...+++.+.+... ...++||+||||||||++|+++|...
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45567777777777788999999999999999877442 23578999999999999999999875
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+..++.++...+. .+|.|+.++.++.++..+....++||||||+|.|.+.+........ +.+.|...+
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L 311 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLL 311 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHH
Confidence 4566676666655 4678999999999999988888899999999999876532211111 222222222
Q ss_pred cCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHH-----HHHHh
Q 011400 337 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~-----la~~t 406 (487)
. + +.+.+|++|+.++ ..|+++.|||. .|.++.|+.+++..||+.+...+....++.+.+ .+..+
T Consensus 312 ~----~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 312 S----S-GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 385 (758)
T ss_pred h----C-CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHh
Confidence 2 2 3477888888764 57999999996 599999999999999998876666555555433 33333
Q ss_pred cC-----CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EG-----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G-----~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.. +.|...-.++.+|+... |... .. .....|+.+|+.+.+.+..
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~--~~~~----------~~--~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARA--RLMP----------VS--KRKKTVNVADIESVVARIA 434 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhh--ccCc----------cc--ccccccChhhHHHHHHHHh
Confidence 33 34455666777766432 1100 00 0112478888888887765
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=169.25 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=148.6
Q ss_pred HHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------
Q 011400 192 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 264 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------- 264 (487)
++...+....++.+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~ 117 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP 117 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC
Confidence 3455667777889999999999999999876432 234689999999999999999998753
Q ss_pred ---CCcEEEEecccch-------hhccCCcHHH----------------HHHHHHHHHhcCCcEEEechhhhHHhhhccc
Q 011400 265 ---KTTFFNISASSVV-------SKWRGDSEKL----------------IKVLFELARHHAPSTIFLDEIDAIISQRGEA 318 (487)
Q Consensus 265 ---~~~~i~v~~~~l~-------~~~~g~se~~----------------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~ 318 (487)
+.+|+.++|.... ....+..... ....+. ....++|||||++.|...
T Consensus 118 ~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 118 FKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred cCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHH----
Confidence 3678999986421 1111100000 000111 223479999999998644
Q ss_pred chhhHHHHHHHHHHHHHhcCCc--------------------------CCCCcEEEEEEeCCCCcccHHHHhhccccccC
Q 011400 319 RSEHEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILV 372 (487)
Q Consensus 319 ~~~~~~~~~i~~~Ll~~ld~~~--------------------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~ 372 (487)
.++.|+..++.-. ......+|++||+.|+.+++++++|+. .+.+
T Consensus 191 ---------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f 260 (531)
T TIGR02902 191 ---------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFF 260 (531)
T ss_pred ---------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeC
Confidence 2233444443210 011235566777889999999999995 4888
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPI 451 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~I 451 (487)
+.++.++..+|++..+.......+ ..++.++..+. +++++.++++.|+..+..+ ....|
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~------------------~~~~I 320 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE------------------GRKRI 320 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC------------------CCcEE
Confidence 888999999999999876554322 22444554443 6788888888776554321 01349
Q ss_pred CHHHHHHHHhccC
Q 011400 452 RPEDVEIALKNTR 464 (487)
Q Consensus 452 t~eD~~~AL~~~~ 464 (487)
+.+|++.++..-+
T Consensus 321 t~~dI~~vl~~~~ 333 (531)
T TIGR02902 321 LAEDIEWVAENGN 333 (531)
T ss_pred cHHHHHHHhCCcc
Confidence 9999999998443
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=169.54 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=133.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+++++.+|+||+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 44567888999999999999999988543 23567899999999999999999999865
Q ss_pred ------------------cEEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHH
Q 011400 267 ------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 267 ------------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
.+++++..+ ...-..++.+.+... .....|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 223333221 012234455544433 23356999999998843
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
...+.||..|+. ....+.+|.+|+.++.|.+.+++|| ..+.|..++.++..+.++.++.......+ ..++.++
T Consensus 139 --~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 139 --HAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred --HHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 235668888873 3445677888889999999999999 55999999999999888887765444322 2256677
Q ss_pred HHhcCCcHHHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~~A 421 (487)
+.+.|-. ++...++..+
T Consensus 213 ~~A~Gs~-RdALsLLdQa 229 (700)
T PRK12323 213 QAAQGSM-RDALSLTDQA 229 (700)
T ss_pred HHcCCCH-HHHHHHHHHH
Confidence 7777644 4444454443
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=163.00 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=124.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC----------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~---------- 266 (487)
+....++.+|+|++|++++++.|...+... ..++++||+||||||||++|+++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 345567888999999999999998877543 24567999999999999999999998864
Q ss_pred --------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 267 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 267 --------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+... .
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a 133 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------A 133 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------H
Confidence 3455544321 112344555544432 23469999999988532 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. .+..+++|++|+.+..+++++++|+. .+.+..++.++...+++..+....... +..++.+++.+.
T Consensus 134 ~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 134 FNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 3557777763 23345566677778899999999995 589999999999999988875544322 223555666555
Q ss_pred C
Q 011400 408 G 408 (487)
Q Consensus 408 G 408 (487)
|
T Consensus 210 G 210 (472)
T PRK14962 210 G 210 (472)
T ss_pred C
Confidence 4
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=160.70 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=125.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|+|++|++.+++.|...+... ..++.+||+||||||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 344567888999999999999999887542 234569999999999999999999998652
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.+++..- .....++.+.+.+. .....|+||||+|.|.. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence 333332110 11233444444333 23446999999998843 24
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. ....+++|.+|+.++.+.+++++|+.. +.|..++.++-.+.++..+....... +..+..+++.+.
T Consensus 138 ~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 138 FNALLKTLEE---PPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHHhhc---CCCceEEEeecCChhhccHHHHhhhhe-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5667888763 345577778888899999999999955 88888888888888888876544332 223455666666
Q ss_pred CC
Q 011400 408 GY 409 (487)
Q Consensus 408 G~ 409 (487)
|-
T Consensus 214 Gd 215 (484)
T PRK14956 214 GS 215 (484)
T ss_pred Ch
Confidence 53
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=173.36 Aligned_cols=200 Identities=20% Similarity=0.303 Sum_probs=146.7
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4556777777777888899999999988888776643 233579999999999999999999986
Q ss_pred ------CCcEEEEecccchh--hccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++.+.+.. .+.|+.+..++.+++.+.. ..++||||||+|.+.+.+..... .. ..+.|...
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~n~Lkp~ 311 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD----AANLLKPA 311 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc----HHHHhhHH
Confidence 35577888777653 6889999999999998865 45789999999999875432111 11 11223333
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-----CCCHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVER 405 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-----~~~l~~la~~ 405 (487)
+. + +.+.+|++|+.. ..+|++|.|||. .|.++.|+.+++..||+.+........ +..+..++..
T Consensus 312 l~----~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 312 LA----R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hh----C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 32 3 346678888753 358999999996 699999999999999877665433222 2335667788
Q ss_pred hcCCcH
Q 011400 406 TEGYSG 411 (487)
Q Consensus 406 t~G~sg 411 (487)
+.+|.+
T Consensus 386 s~ryi~ 391 (852)
T TIGR03345 386 SHRYIP 391 (852)
T ss_pred cccccc
Confidence 877643
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=168.29 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=133.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|++|+|++.+++.|+.++... ..++.+||+||+|||||++++.+|+.+++.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 44567888999999999999999987532 235678999999999999999999988642
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
+++++..+ ...-..++.+++.+.. ....|+||||+|.|.. ...
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~ 136 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAF 136 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHH
Confidence 33333221 1122345555554432 2346999999998843 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.||..|+. ....+.+|.+||.++.|.+.+++||. .+.|..++.++..+.|+.++....... +..+..|++.+.|
T Consensus 137 NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 137 NAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHHHHHh---cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 567787773 33457788889999999999999994 489999999999999998886655432 2336667788887
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
-.. +..+++..
T Consensus 213 smR-dALsLLdQ 223 (830)
T PRK07003 213 SMR-DALSLTDQ 223 (830)
T ss_pred CHH-HHHHHHHH
Confidence 554 33344333
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-16 Score=174.50 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=139.6
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++.++++.....+-++++++|.+...+++.+.+... ...+++|+||||||||++|+++|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 45567777777777888999999999888888877442 33579999999999999999999988
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++.+.+. .+|.|+.++.++.+|+.+.. ..++||||||+|.|.+..... ...... +.|...
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~~----~~lkp~ 302 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAG----NMLKPA 302 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhHH----HHhcch
Confidence 6788999888776 46889999999999987644 567899999999998764322 112222 212222
Q ss_pred hcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC
Q 011400 336 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 394 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~ 394 (487)
+ .+ +.+.+|++|+..+ .+|+++.|||.. |.++.|+.+++..|++.+.......
T Consensus 303 l----~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 303 L----AR-GELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred h----hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhhhhccC
Confidence 2 23 3467788887764 489999999975 8899999999999999887654433
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=157.45 Aligned_cols=154 Identities=23% Similarity=0.356 Sum_probs=112.0
Q ss_pred cCCCCCCCCcccCcHHHHHH---HHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 199 RGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~---L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...++.+++|++|++++... |..++... ...+++|+||||||||++|+++|+.++.+++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34566789999999998666 77777431 2357999999999999999999999999999998754
Q ss_pred chhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 276 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
. ....++.+++.+. .....||||||+|.+... ..+.|+..++. . .+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~-~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----G-TITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----C-cEEEEEe
Confidence 2 2234455555443 224579999999988532 22345565552 2 3445544
Q ss_pred e-CC-CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 352 T-NL-PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 352 T-n~-p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
| .. ...+++++++|| ..+.++.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 33 357999999999 56899999999999999987654
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=153.10 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=127.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+++|+++...
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 44567788999999999999999887542 235678999999999999999999988532
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~ 136 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSF 136 (363)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HHH
Confidence 22222111 0122345555554432 1235999999998842 233
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.++.+.+++++|+. .+.+++|+.++..++++..+...+... +..++.++..+.|
T Consensus 137 naLLk~lEe~---~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 137 NALLKTLEEP---PQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHHhcC---CCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4577777642 3345566677778889999999994 589999999999999998876654322 2335556666665
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
+.+++..++..
T Consensus 213 -~~R~al~~l~~ 223 (363)
T PRK14961 213 -SMRDALNLLEH 223 (363)
T ss_pred -CHHHHHHHHHH
Confidence 34444444433
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=161.78 Aligned_cols=187 Identities=18% Similarity=0.184 Sum_probs=131.3
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++|+|++.+++.|..++... ..++.+||+||||||||++|+++|+.++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 34567788999999999999999988532 34578999999999999999999999864
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++++- ..-..++.+...+.. ....|++|||+|.|... ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~ 135 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SF 135 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HH
Confidence 2344443321 122345555544322 23469999999988432 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. ...+.+|.+|+.+..+...+++|+. .+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 136 NALLKtLEEP---P~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 136 NALLKTLEEP---PEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHHhcC---CCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5677777732 3345666777888889999999994 4899999999999999888866554332 335667777665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++.+++.
T Consensus 212 -dLRdALnLLD 221 (702)
T PRK14960 212 -SLRDALSLTD 221 (702)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=172.87 Aligned_cols=200 Identities=18% Similarity=0.272 Sum_probs=148.3
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++......-+|++++|.++..+++.+.+.. ...++++|+||||||||++|+.+|..+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4556677777777777899999999999999998754 244689999999999999999999987
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+.+++.++.+.+. .+|.|+.+..++.+++.+....++||||||+|.|.+.....+ ... +.+.|...+
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~~----~a~lLkp~l 303 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AID----AANILKPAL 303 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-ccc----HHHHhHHHH
Confidence 4789999988776 478899999999999999888889999999999987643211 111 122222222
Q ss_pred cCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC----CCC-CCCCHHHHHHHh
Q 011400 337 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGE-ESLPYDLLVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~----~~~-~~~~l~~la~~t 406 (487)
. + +.+.+|++|+... ..|+++.+||.. +.++.|+.++...|++...... ... .+..+..++..+
T Consensus 304 ~----r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 304 A----R-GELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred h----C-CCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 2 2 3366777777653 478999999965 7899999999999988654221 111 222356677777
Q ss_pred cCCcH
Q 011400 407 EGYSG 411 (487)
Q Consensus 407 ~G~sg 411 (487)
.+|.+
T Consensus 378 ~~yi~ 382 (821)
T CHL00095 378 DQYIA 382 (821)
T ss_pred hccCc
Confidence 77654
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=162.84 Aligned_cols=189 Identities=19% Similarity=0.182 Sum_probs=130.7
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|...+... ..++.+||+||||||||++|+.+|+.++..
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 44567888999999999999999988542 245678999999999999999999988542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++++++++- ..-..++.+.+.+.. ....|++|||+|.|... ..
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~ 136 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SF 136 (509)
T ss_pred CHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HH
Confidence 444443321 122335555544332 23469999999988532 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++-...++..+...+...+ ..++.+++.+.|
T Consensus 137 naLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 137 NALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 334666677788888988999999 44888888888888888877765544322 235556666655
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 -slR~al~lLdq~ 224 (509)
T PRK14958 213 -SVRDALSLLDQS 224 (509)
T ss_pred -cHHHHHHHHHHH
Confidence 444555555433
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=171.53 Aligned_cols=199 Identities=19% Similarity=0.307 Sum_probs=146.0
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+.. ...++++|+||||||||++|+++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 4556777777777888899999999998888887644 233678999999999999999999986
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++...+. .+|.|+.++.++.+++.+.. ..|+||||||+|.|.+.....+ .. ...+.|...
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~----d~~~~Lk~~ 297 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM----DAGNMLKPA 297 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh----HHHHHhchh
Confidence 6778888887775 46889999999999998865 3589999999999986432211 11 122222222
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-----CHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVER 405 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-----~l~~la~~ 405 (487)
+ .+ +.+.+|++|+.. ..+|+++.|||.. +.++.|+.+++..|++.+.........+ .+...+..
T Consensus 298 l----~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l 371 (852)
T TIGR03346 298 L----AR-GELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATL 371 (852)
T ss_pred h----hc-CceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh
Confidence 2 23 346778888766 3579999999965 8899999999999999876555443332 24445555
Q ss_pred hcCCc
Q 011400 406 TEGYS 410 (487)
Q Consensus 406 t~G~s 410 (487)
+.+|.
T Consensus 372 s~~yi 376 (852)
T TIGR03346 372 SHRYI 376 (852)
T ss_pred ccccc
Confidence 55553
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=160.50 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=134.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
|...+.+.++++++|.+.+++.|..++..... ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 55667888899999999999999999865431 1346789999999999999999999999999999998765
Q ss_pred hhhccCCcHHHHHHHHHHHHh------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 277 VSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
.. ...+..+...+.. ..+.+|+|||+|.+..... ......|+..++. .. ..+|+
T Consensus 76 r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIl 135 (482)
T PRK04195 76 RT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIIL 135 (482)
T ss_pred cc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEE
Confidence 32 2233333333322 2467999999999864211 1123445555552 12 23566
Q ss_pred EeCCCCcccH-HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 351 ATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 351 tTn~p~~Ld~-aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
++|.+..+.. .+++|+ ..+.|+.|+.++...+++..+....... +..++.|++.+.| |++.+++
T Consensus 136 i~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 136 TANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred eccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 8888888887 677777 5599999999999999999886655432 2335667776655 5554444
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=159.08 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=130.2
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
+++++.+|+||+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 4457788999999999999999888542 234568999999999999999999998652
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++..+- ..-..++.+.+.+. .....|++|||+|.|.. ...+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHH
Confidence 233332210 11233444444432 22346999999998843 3456
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
.||..|+. ....+.+|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+..+.......+ ..+..++..+.|.
T Consensus 138 ALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 68888873 3345666777888899999999998 55899999999999888888755443322 3356677777775
Q ss_pred cHHHHHHHHHH
Q 011400 410 SGSDIRLVSKE 420 (487)
Q Consensus 410 sg~dI~~L~~~ 420 (487)
.+ +...++..
T Consensus 214 ~R-~Al~lldq 223 (647)
T PRK07994 214 MR-DALSLTDQ 223 (647)
T ss_pred HH-HHHHHHHH
Confidence 44 34444433
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=161.36 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=130.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE---------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 268 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~--------- 268 (487)
.+++++.+|++|+|++.+++.|+.++... +.++.+||+||||||||++|+.+|+.++..-
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 44567788999999999999999887542 2355689999999999999999999986531
Q ss_pred ---------------EEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 269 ---------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 269 ---------------i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
+.++..+ ...-..++.+.+.+.. ....|+||||+|.|. ....
T Consensus 76 C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAq 136 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSF 136 (944)
T ss_pred chHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHH
Confidence 1111110 0112334554444332 234699999999884 3345
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+. ....+.+|.+|+.+..|.+.+++|+ .++.|..++.++....|+..+.......+ ..++.+++.+.|
T Consensus 137 NALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 3344556667888888999999999 44899999999999888887765433322 235667777776
Q ss_pred CcHHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEAA 422 (487)
Q Consensus 409 ~sg~dI~~L~~~A~ 422 (487)
-. +++..++..+.
T Consensus 213 d~-R~ALnLLdQal 225 (944)
T PRK14949 213 SM-RDALSLTDQAI 225 (944)
T ss_pred CH-HHHHHHHHHHH
Confidence 44 44555554433
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=154.41 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=134.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------ 265 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------------ 265 (487)
.+.+++.+|+|++|++.+++.|...+... ..++++||+||||+|||++|+.+|+.++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 34567888999999999999999877542 3467899999999999999999999763
Q ss_pred ------------CcEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 266 ------------TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 266 ------------~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
..++++++++- ..-..++.+.+.+... ...|++|||+|.|.. ...
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~ 133 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAF 133 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHH
Confidence 23455555421 2334566666655432 346999999988742 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+.. +.+..++.++....++..+...+...+ ..++.+++.+.|
T Consensus 134 NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 134 NALLKTLEE---PAPHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 668888874 333466667778888899999999955 899999999999999988866554422 335667777765
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 210 -slR~alslLdql 221 (491)
T PRK14964 210 -SMRNALFLLEQA 221 (491)
T ss_pred -CHHHHHHHHHHH
Confidence 445555555444
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=153.64 Aligned_cols=187 Identities=17% Similarity=0.203 Sum_probs=128.1
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 267 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------- 267 (487)
.|++|+|++.+++.|+..+.....+...+. ...++++||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 389999999999999999977654322221 2356789999999999999999999987443
Q ss_pred ------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 268 ------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 268 ------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
+..+.... ....-..++.+++.+... ...|++|||+|.+... ..+.|+..|+
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 11221110 111234466777666532 3359999999998532 2355888887
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 417 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L 417 (487)
.. ....+ +|.+|+.++.+.+++++|+. .+.|+.|+.++...++.... .. .......++..+.|..+..+..+
T Consensus 143 ep--~~~~~-fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPRTV-WLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCCCe-EEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 32 33334 44555558999999999994 59999999999888876432 12 12335568888999888776655
Q ss_pred HH
Q 011400 418 SK 419 (487)
Q Consensus 418 ~~ 419 (487)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 44
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=148.25 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=142.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~ 272 (487)
+....++++|.++..+.|...+...+.. ..+.+++|+||||||||++++++++++. ..+++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 4455678999999999999988543321 2345799999999999999999998762 5688888
Q ss_pred cccchhh----------c---------cC-CcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 273 ASSVVSK----------W---------RG-DSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 273 ~~~l~~~----------~---------~g-~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
|....+. . .+ ...+....++.... ...+.||+|||+|.+.... ..++..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 8654321 1 01 11233444554443 2446799999999997221 113333
Q ss_pred HHHHhcCCcCCCCcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCC---CCCCCHHHHHH
Q 011400 332 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVE 404 (487)
Q Consensus 332 Ll~~ld~~~~~~~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~---~~~~~l~~la~ 404 (487)
|+...+........+.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+..... -.+..++.++.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 4433221222335678888898885 47888888985 56899999999999999988752111 11112233333
Q ss_pred ---HhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 405 ---RTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 405 ---~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.+.|... .+..+|+.|+..+.++ ....||.+|+.+|+..+..+
T Consensus 232 ~~~~~~Gd~R-~al~~l~~a~~~a~~~------------------~~~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 232 LAAQEHGDAR-KAIDLLRVAGEIAERE------------------GAERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHhcCCHH-HHHHHHHHHHHHHHHc------------------CCCCCCHHHHHHHHHHHHHH
Confidence 3345433 3344666666554432 01247888888877766433
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=156.14 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=134.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|+|++|++.+++.|...+... ..++++||+||||||||++|+++|+.++..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 445678888999999999999998876442 345789999999999999999999998642
Q ss_pred -------------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHH
Q 011400 268 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 268 -------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
++++++.+ ......++.+++.+... ...|++|||+|.+..
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------- 142 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------- 142 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------
Confidence 12222111 12345566677666432 245999999998842
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
...+.|+..++. ....+++|.+|+.++.+.+++++|+. .+.+..++.++...+++..+...+...+ ..++.++
T Consensus 143 --~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 143 --GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred --HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 234557777763 33456666677888889999999994 5889999999999999999876554433 3356677
Q ss_pred HHhcCCcHHHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~~A 421 (487)
..+.| +.+++..++..+
T Consensus 217 ~~s~G-slR~al~~Ldka 233 (507)
T PRK06645 217 YKSEG-SARDAVSILDQA 233 (507)
T ss_pred HHcCC-CHHHHHHHHHHH
Confidence 77776 445555555444
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=148.72 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=121.2
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|.+.+++.+|+|++|.+++++.|+.++... ...++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 456678889999999999999998876431 224699999999999999999999972 345666
Q ss_pred ecccchhhccCCcHHHHHHHHHHH-H------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELA-R------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a-~------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.++..+ ...++...... . ...+.|++|||+|.+.... .+.|+..++... .
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------q~aL~~~lE~~~---~ 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA-------------QQALRRTMEIYS---N 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH-------------HHHHHHHHhccc---C
Confidence 6654321 11233222211 1 1235699999999985431 233556665322 2
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
...+|.++|.+..+.+++++|+. .+.|+.|+.++....++..+...+... +..++.++..+.|
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred CceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 23456688888889999999994 589999999999999998876654432 2235555555554
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=159.16 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=132.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|...+... +.++++||+||+|||||++|+++|+.++..
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 44567888999999999999999988642 345789999999999999999999987543
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++... ......++.+++.+.. ....|+||||+|.|.. ...
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~ 136 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAF 136 (709)
T ss_pred cHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHH
Confidence 12222111 1223456666654432 2346999999987742 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++....|+..+...+...+ ..+..|++.+.|
T Consensus 137 NALLKtLEEP---p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 137 NAMLKTLEEP---PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred HHHHHHHHhC---CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 5678888732 334567778888999999999999 44888899999999999988876554422 235666766655
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 -slRdAlnLLDqa 224 (709)
T PRK08691 213 -SMRDALSLLDQA 224 (709)
T ss_pred -CHHHHHHHHHHH
Confidence 344555555443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=155.70 Aligned_cols=225 Identities=20% Similarity=0.229 Sum_probs=141.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 272 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~ 272 (487)
..--+.|.|.++..++|..++...+... .+...++|+|+||||||++++.+.+++ ...+++|+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgs-------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQS-------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcC-------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 3334789999999999999886554311 233345799999999999999998876 25678999
Q ss_pred cccchhhc----------------cC-CcHHHHHHHHHHHHh--cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 273 ASSVVSKW----------------RG-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 273 ~~~l~~~~----------------~g-~se~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
|..+...+ .| .+...+..+|..... ....||+|||||.|.... ..+ |+
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDV---LY 890 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKV---LF 890 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHH---HH
Confidence 96543221 01 123455666665422 234699999999997531 223 33
Q ss_pred HHhcCCcCCCCcEEEEEEeCC---CCcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHhcC
Q 011400 334 IQMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTG-EESLPYDLLVERTEG 408 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~---p~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~~~-~~~~~l~~la~~t~G 408 (487)
..++........+.||+++|. +..+++++++||.. .+.|++|+.++..+||+..+..... -.+..++.+|+.+..
T Consensus 891 nLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 891 TLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred HHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 333322233456888899986 45678889998864 4888999999999999998865311 111113333332222
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 409 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 409 ~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
. .+.+|+++..+....+.. ....|+.+|+.+|+.++..+
T Consensus 971 ~-------------SGDARKALDILRrAgEik------egskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 971 V-------------SGDIRKALQICRKAFENK------RGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred c-------------CCHHHHHHHHHHHHHhhc------CCCccCHHHHHHHHHHHHhh
Confidence 1 233444444444333321 11258999999999877444
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=147.13 Aligned_cols=190 Identities=21% Similarity=0.246 Sum_probs=123.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|..++.+.+|++++|.+.+++.|..++... ...+++|+||||||||++|+++++++. .+++.+
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 445667788999999999999999987532 123699999999999999999999883 356788
Q ss_pred ecccchhhcc-------------CC-------cHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHH
Q 011400 272 SASSVVSKWR-------------GD-------SEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASR 326 (487)
Q Consensus 272 ~~~~l~~~~~-------------g~-------se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~ 326 (487)
++.++..... +. ....++.+....... .+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------ 140 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------ 140 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------
Confidence 8766532210 00 112233333232222 2469999999987432
Q ss_pred HHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHH
Q 011400 327 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVER 405 (487)
Q Consensus 327 ~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~ 405 (487)
..+.|...++.... ... +|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+....... +..++.++..
T Consensus 141 -~~~~L~~~le~~~~--~~~-~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 -AQQALRRIMEQYSR--TCR-FIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred -HHHHHHHHHHhccC--CCe-EEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 12235555553322 223 4456666677778899998 4588999999999999999876555432 2234556655
Q ss_pred hcCCcHHHHHHHHH
Q 011400 406 TEGYSGSDIRLVSK 419 (487)
Q Consensus 406 t~G~sg~dI~~L~~ 419 (487)
+. +|++.+..
T Consensus 216 ~~----gdlr~l~~ 225 (337)
T PRK12402 216 AG----GDLRKAIL 225 (337)
T ss_pred cC----CCHHHHHH
Confidence 53 34544443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=145.79 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=113.7
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+.+.+++.+|++++|.+.+++.+..++... ..++.+||+||||+|||++|++++++++.+++.+++.+
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 455677889999999999999999988531 23456777999999999999999999999999998876
Q ss_pred hhhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.. .......+........ ...+.+|+|||+|.+... .....|...++.. ...+.+|+++|.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCCh
Confidence 11 1111122222211111 124689999999987321 0112233445432 2335577789999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
..+.+++++||. .+.++.|+.+++..+++.++
T Consensus 142 ~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 142 NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 999999999995 58999999999988876543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=152.46 Aligned_cols=196 Identities=15% Similarity=0.266 Sum_probs=122.7
Q ss_pred CCCCCCCccc-CcH--HHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-GLE--NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G~e--~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.+..+|++++ |.. .+...+.++...+ ....++++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566788854 433 2455555544322 1234569999999999999999999987 56688999
Q ss_pred cccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+...... ....+.+..+ .+.+|+|||+|.+.++.. ....|+..++.....+. .+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEEC
Confidence 88876654433221 1122222222 467999999999864421 11234444443322333 345555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
...|.. +++++++||. ..+.+..|+.++|..|++..+...... .+..++.+|+.+.| +.++|..++...
T Consensus 252 ~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 252 DRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 555544 6789999995 468899999999999999998764433 22335667776665 344555444443
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=151.06 Aligned_cols=132 Identities=24% Similarity=0.361 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh----cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 282 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~----~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g 282 (487)
.|+|++.+|+.|...+..+...-... .....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999987775433222110 011234578999999999999999999999999999999988764 5777
Q ss_pred CcH-HHHHHHHHH----HHhcCCcEEEechhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCC
Q 011400 283 DSE-KLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGL 339 (487)
Q Consensus 283 ~se-~~l~~~f~~----a~~~~p~IL~IDEiD~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~ 339 (487)
... ..+..++.. .....++||||||||.+..++.+.... +.....+++.||..|++.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 643 334444432 223467899999999998763221111 111234777888888753
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=154.13 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=125.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|..++... ..++.+||+||||||||++|+++|+.+...
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 35667888999999999999999988542 244567999999999999999999988531
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.+++.+ ......++.+.+.+.. ..+.||+|||+|.+. ....+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHH
Confidence 34444321 1123344554444332 245699999998763 22355
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
.|+..++. ....+++|.+++.+..+.+.+.+|+. .+.|..|+.++....++..+...+...+ ..++.++..+.|
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777763 23345666678888999999999996 5899999999999999988866554322 235556666665
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=149.49 Aligned_cols=196 Identities=17% Similarity=0.283 Sum_probs=122.4
Q ss_pred CCCCCCc-ccCcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 202 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 202 ~~~~~~d-i~G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
+..+|++ ++|.+. +...+.+....+ ....+.++||||||+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4566888 556443 333444433221 1234579999999999999999999987 577889998
Q ss_pred ccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 274 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 274 ~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
.++...+...... ....+....+ .+.+|+|||+|.+.++.. ....|+..++.....+. .+|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~~~~~~~-~iiits~ 240 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER-----------TQEEFFHTFNALHENGK-QIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-CEEEecC
Confidence 8776544322111 1112222222 357999999999864321 11224444433322223 3455555
Q ss_pred CCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 353 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 353 n~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..|.. +++.+++||. ..+.++.|+.++|..|++..+....... +..++.+|+...+ +.++|..++....
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 55543 6688999996 4689999999999999999987655443 3336778877765 4456666555443
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=154.71 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|...+... ..++.+||+||||+|||++|+.+|+.++..
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34556778999999999999999888542 345678999999999999999999998542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++++. ......++.+.+.+... ...|++|||+|.+.. ...
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a~ 136 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SAF 136 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HHH
Confidence 22222211 11234456666555321 235999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...+...+...+...+ ..+..+++.+.|
T Consensus 137 naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 137 NAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 568888874 3344566677777888888899999 55999999999988888887765444322 234556666665
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
- .+++..++..+
T Consensus 213 s-lr~al~lldqa 224 (527)
T PRK14969 213 S-MRDALSLLDQA 224 (527)
T ss_pred C-HHHHHHHHHHH
Confidence 3 34444554443
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=153.73 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=131.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++++|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.++.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 45567888999999999999999988542 34567999999999999999999998743
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.++++. +..-..++.+.+.+.. ....|++|||+|.|.. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 233443321 1233456666665543 2346999999998842 235
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+++|.+|+.++.+.+.+++|+.. +.|..|+.++....++..+...+...+ ..+..++..+.|
T Consensus 137 naLLKtLEep---p~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 137 NALLKTLEEP---PAHVIFILATTEPHKIPATILSRCQR-FDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHHHHhcCC---CCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5678877732 33455666677889999999999965 889999999999999888866554332 335566776665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -~~R~al~~Ld 222 (559)
T PRK05563 213 -GMRDALSILD 222 (559)
T ss_pred -CHHHHHHHHH
Confidence 3444444433
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=144.23 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~ 274 (487)
.+..++.+++|++|++++..+ ...+...+.. ..-.+++||||||||||+||+.|+.-...+ |+++++.
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 334466778999998886544 2222111111 122469999999999999999999988655 7777654
Q ss_pred cchhhccCCcHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
. ...+.++.+|+.++.. .-.|||||||+.+-...+ ..||-.++ .+..++|-
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-------------D~fLP~VE----~G~I~lIG 255 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-------------DTFLPHVE----NGDITLIG 255 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-------------hcccceec----cCceEEEe
Confidence 4 3445678888887653 346999999998854422 22443332 33434444
Q ss_pred EEeCCC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-----C---CCCC------CCCHHHHHHHhcCCcHHHH
Q 011400 350 AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----Q---TGEE------SLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 350 atTn~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-----~---~~~~------~~~l~~la~~t~G~sg~dI 414 (487)
+||..| ..++.+|++|+.. +.+..........||.+.+.. . +... +.-++.++..+.|-....|
T Consensus 256 ATTENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 555444 6799999999955 555555666777777764321 1 0111 1124556776776544443
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 415 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 415 ~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..|--.+.+...| ........++.+|+.+.|+.-.
T Consensus 335 N~Lems~~m~~tr---------------~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTR---------------SGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhh---------------cCCcccceecHHHHHHHHhhcc
Confidence 3322211111111 0011224589999999998544
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=157.03 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|..++... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 44567788999999999999999988543 234678999999999999999999988641
Q ss_pred -------------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHH
Q 011400 268 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 268 -------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
++.++..+ ...-..++.+.+.+... ...|++|||+|.|...
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------- 139 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------- 139 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH----------
Confidence 22332221 01223455555554321 2359999999998532
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
..+.|+..++. ....+.+|.+|+.+..+...+++|+ ..+.|..++.++....++..+...+...+ ..+..++
T Consensus 140 ---a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 140 ---AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred ---HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 24567777773 3344566677788888888999999 55899999999999999888765554433 2356677
Q ss_pred HHhcCCcHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSK 419 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~ 419 (487)
+.+.| +.+++..++.
T Consensus 213 ~~s~G-slR~al~lLd 227 (618)
T PRK14951 213 RAARG-SMRDALSLTD 227 (618)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77766 3344444443
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=145.20 Aligned_cols=177 Identities=21% Similarity=0.269 Sum_probs=123.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
....++.+|++++|++.+++.|.+.+... ..++.+||+||||+|||++|+++++.+...
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34557788999999999999999888532 345679999999999999999999987432
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++... ......++.+++.+... ...|++|||+|.+.. ...
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~ 134 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAF 134 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHH
Confidence 23332221 12233456666665432 235999999998742 134
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+++|.+|+.++.+.+++++|+. .+.++.|+.++...+++.++...+...+ ..+..+++.+.|
T Consensus 135 ~~Ll~~le~~---~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 135 NALLKTLEEP---PEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHHhCC---ccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577777642 2345566677888888899999995 5899999999999999988866554322 234556666655
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=153.80 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=126.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|+.++... ..++.+||+||+|||||++|+++|+.++..
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 34567888999999999999999988542 345568999999999999999999987532
Q ss_pred ----------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 268 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 268 ----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
++.++++.. ..-..++.+.+.+.. ....|++|||+|.|...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~------------- 133 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA------------- 133 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------
Confidence 222322211 112334444433322 23459999999988432
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t 406 (487)
..+.|+..|+. ....+++|.+|+.+..+.+++++|+ ..+.|..++.++..+.++.++...+...+ ..+..++..+
T Consensus 134 A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 134 GFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45668888873 3344666777788889999999998 45899999999988888888766554322 2234455544
Q ss_pred cCCcHHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSKE 420 (487)
Q Consensus 407 ~G~sg~dI~~L~~~ 420 (487)
.| +.+++.+++..
T Consensus 210 ~G-dlR~aln~Ldq 222 (584)
T PRK14952 210 GG-SPRDTLSVLDQ 222 (584)
T ss_pred CC-CHHHHHHHHHH
Confidence 44 33444444443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=159.37 Aligned_cols=187 Identities=20% Similarity=0.157 Sum_probs=127.0
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|++|+|++.+++.|+..+..- ..++.+||+||+|||||++|+.||+.+.+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 35677888999999999999999988542 234568999999999999999999998642
Q ss_pred ----------------EEEEecccchhhccCCcHHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 268 ----------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 268 ----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
++.++..+. ..-..++.+.+.+ ......|+||||+|.|.. .
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~ 135 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------Q 135 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------H
Confidence 223322111 0122333333322 223456999999999853 2
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t 406 (487)
..+.||+.|+.. ...+++|++|+.++.|.+.|++|+. ++.|..++.++...+|+..+.......+ ..+..++..+
T Consensus 136 a~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 136 GFNALLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred HHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 355688888743 3345666677888889999999994 5899999999999999888766554322 2245566666
Q ss_pred cCCcHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSK 419 (487)
Q Consensus 407 ~G~sg~dI~~L~~ 419 (487)
.| +.+++..++.
T Consensus 212 gG-dlR~Al~eLE 223 (824)
T PRK07764 212 GG-SVRDSLSVLD 223 (824)
T ss_pred CC-CHHHHHHHHH
Confidence 55 3344444433
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.3e-14 Score=151.40 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=123.7
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+...+++.+|+||+|++.+++.|...+... ..+.++||+||||||||++|+.+|+.+...
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 344567888999999999999999988542 224679999999999999999999988642
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++...- ..-..++.+.+.+. .....||||||+|.|.. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a 135 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EA 135 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------HH
Confidence 333432210 11122333322222 22346999999998842 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|..++.++...+|+..+....... +..++.+++.+.
T Consensus 136 ~naLLk~LEEP---~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 136 FNALLKTLEEP---PARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHHhhcc---CCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46688888742 2346677788888888889999995 589999999999988888776544322 223555666666
Q ss_pred CCc
Q 011400 408 GYS 410 (487)
Q Consensus 408 G~s 410 (487)
|-.
T Consensus 212 Gdl 214 (624)
T PRK14959 212 GSV 214 (624)
T ss_pred CCH
Confidence 533
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-14 Score=135.88 Aligned_cols=177 Identities=16% Similarity=0.194 Sum_probs=106.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567799988765422 11111110 111 112358999999999999999999986 3455555543211
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
.....+++... ++.+|+|||++.+.++.. ....|+..++.....+..++|++++..|..
T Consensus 80 --------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 --------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred --------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 11112222222 347999999998864321 111244444433333444555555566665
Q ss_pred cc---HHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 358 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 358 Ld---~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
++ +.+++|+. ..+.++.|+.+++.+|++..+....... +..++.|++...|
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 44 78999874 5678999999999999998876544432 2335667777665
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=152.06 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=124.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++++|++.+++.|...+... ..++.+||+||||||||++|+.+|+.+..
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34567788999999999999999888542 23466899999999999999999998853
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.++...- ..-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a~ 136 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QSF 136 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HHH
Confidence 2333332111 111233444444332 2346999999998743 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++..+.......+ ..++.++..+.|
T Consensus 137 naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 137 NALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 568888873 2334556666677888888899999 55999999999988888887765443322 224556666654
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -dlR~alnlLe 222 (546)
T PRK14957 213 -SLRDALSLLD 222 (546)
T ss_pred -CHHHHHHHHH
Confidence 3333333333
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=134.63 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=126.4
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC------cEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~------~~i 269 (487)
-+.+.+.+.+|+++.|++.+++.|...+.. . ...++|||||||||||+.|+++|.++.. .+.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 345566778899999999999999998855 1 2347999999999999999999999954 244
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhc---------C-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHH---------A-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~---------~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
+.+.++..+..++ ..+++. |...... + +.|++|||+|.|..+ ..+.|...|+..
T Consensus 93 ~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDF 156 (346)
T ss_pred hhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhcc
Confidence 4455554433221 112221 2222211 1 259999999999644 345577788753
Q ss_pred cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcC
Q 011400 340 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 408 (487)
Q Consensus 340 ~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G 408 (487)
...+.+|..||.++.|...+.+|+.. +.|+....+.....|+.+....+..-+. .++.+++.++|
T Consensus 157 ---s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 ---SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ---ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 33466778899999999999999977 7777766667777777777666665433 36667777666
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=143.27 Aligned_cols=229 Identities=20% Similarity=0.202 Sum_probs=145.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l 276 (487)
+....+.++|.++..++|...+...... ..+.+++|+||||||||++++.+++++ +..+++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 4445678999999999999888543321 234579999999999999999999987 477899988654
Q ss_pred hhh----------cc-------CC-cHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 277 VSK----------WR-------GD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 277 ~~~----------~~-------g~-se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.+. .. +. ....+..+.+.... ..+.||+|||+|.+..... ...+..|+..++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 221 11 11 12333444444333 3457999999999972111 123445555555
Q ss_pred CCcCCCCcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHhcCCc
Q 011400 338 GLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTEGYS 410 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~---~~~~~~l~~la~~t~G~s 410 (487)
... ...+.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+.... .-.+..++.+++.+.+.+
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 332 22577788887763 47788888874 5689999999999999998874321 112223556666664432
Q ss_pred H--HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 011400 411 G--SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467 (487)
Q Consensus 411 g--~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~ 467 (487)
| +.+-.++..|+..+..+ ....|+.+|+..|+..+.++.
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAERE------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHc------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 2 22334555555444332 113489999999988875443
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=136.42 Aligned_cols=191 Identities=21% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
....+.+++++|.+..|+.|.+.....+. ..|.+++||||++|||||+++|++.+++ |..+++|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34567899999999999999998865543 2477899999999999999999999977 788999987776
Q ss_pred hhhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cCCCCcEEEEEEeCC
Q 011400 277 VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNL 354 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~VlVIatTn~ 354 (487)
. .+..+++..+. ...-|||+||+. + . . ... -...|-..|+|- ...+.+|+|.+|+|+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F--e--~---~d~----~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F--E--E---GDT----EYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C--C--C---CcH----HHHHHHHHhcCccccCCCcEEEEEecch
Confidence 3 23444544443 234699999973 1 1 1 111 113355556654 567788999999997
Q ss_pred CCccc---------------------H--HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHH----HHHHh
Q 011400 355 PWELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERT 406 (487)
Q Consensus 355 p~~Ld---------------------~--aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~----la~~t 406 (487)
-..++ + +|.+||+..+.|..|+.++-.+|++.++.......+. .+.. .|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 54321 1 4556999999999999999999999999776655432 2222 33444
Q ss_pred cCCcHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSK 419 (487)
Q Consensus 407 ~G~sg~dI~~L~~ 419 (487)
.|.||+--.+.++
T Consensus 231 g~RSGRtA~QF~~ 243 (249)
T PF05673_consen 231 GGRSGRTARQFID 243 (249)
T ss_pred CCCCHHHHHHHHH
Confidence 5677766555544
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=147.41 Aligned_cols=247 Identities=25% Similarity=0.326 Sum_probs=159.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g- 282 (487)
+-|+|++++|+.+..++.....+..+...+ -.+++++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 348999999999998886543332221111 124589999999999999999999999999999999887763 6777
Q ss_pred CcHHHHHHHHHHH-------------------------------------------------------------------
Q 011400 283 DSEKLIKVLFELA------------------------------------------------------------------- 295 (487)
Q Consensus 283 ~se~~l~~~f~~a------------------------------------------------------------------- 295 (487)
..+..++.+|+.+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 4556666555544
Q ss_pred ------------------------------------------------------------------------HhcCCcEE
Q 011400 296 ------------------------------------------------------------------------RHHAPSTI 303 (487)
Q Consensus 296 ------------------------------------------------------------------------~~~~p~IL 303 (487)
+..+.+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01234699
Q ss_pred EechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhccccccC
Q 011400 304 FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV 372 (487)
Q Consensus 304 ~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~~ 372 (487)
||||||+++.+..+. ...-...-++..||..++|-.. ...++++|++. ..|.+|=|.|.-||..++.+
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 999999999764211 1111223477788999887421 22457777665 34666778899999999999
Q ss_pred CCCCHHHHHHHHHHh----CCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHh-------HHHHHHHHHhhc--
Q 011400 373 PLPDTEARRAMFESL----LPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAM-------QPLRRLMVLLEG-- 435 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~----l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~-------~a~rr~~~~le~-- 435 (487)
..++.++...||..- ++.+ ..+- .++| |+...++.+++.|.. .-+|++...++.
T Consensus 331 ~~L~~edL~rILteP~nsLikQy--------~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQY--------KALM-KTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHH--------HHHH-hhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999988887431 1111 1110 1222 566677777777654 123444333332
Q ss_pred --hhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 436 --RQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 436 --~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.....+... .....|+.+-+.+.+..+-
T Consensus 402 ~d~~fe~p~~~-~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 402 EDISFEAPDLS-GQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHHhcCCCCC-CCEEEECHHHHHhHHHHHH
Confidence 222333322 2335688888877776543
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=132.37 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=121.6
Q ss_pred CCCCCCccc-C-cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 202 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~-G-~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
+..+|++.+ | ...+...+..+... ....+++||||||||||+|++++++++ +..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 455677766 4 45566666665432 123579999999999999999999976 344556655442
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
... ...+.+.... ..+|+|||++.+.++.. .... |...++.....+...+++++++.|.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-------~~~~----lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-------WEMA----IFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-------HHHH----HHHHHHHHHHcCCCeEEEeCCCChH
Confidence 211 1112222222 26999999998854311 1111 2222222222222234555555555
Q ss_pred c---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 357 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 357 ~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
. +.+.+++|+. .++.+..|+.+++.++++.......... +..++.|++...|- .+.+..++......++
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~l~~~~l---- 218 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE-MRTLFMTLDQLDRASI---- 218 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH----
Confidence 4 5789999995 6688999999999999998665544332 23356677777653 3344444433211111
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....+||.+.+++++.
T Consensus 219 ---------------~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 219 ---------------TAQRKLTIPFVKEILK 234 (235)
T ss_pred ---------------hcCCCCCHHHHHHHHc
Confidence 1124588888888764
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=151.31 Aligned_cols=177 Identities=19% Similarity=0.218 Sum_probs=125.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++++++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 34567788999999999999999988542 345678999999999999999999998532
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++++++.+ ...-..++.+.+.+... ...|++|||+|.|... ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~ 136 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AF 136 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HH
Confidence 23333221 11223455555554322 2359999999988532 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..|+. ....+.+|.+|+.++.|.+.+++|+. .+.|..++.++-...+...+...+... +..+..++..+.|
T Consensus 137 naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 137 NALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 668888873 33446677778888999999999995 589998999888888888776554432 2335566666666
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=145.05 Aligned_cols=226 Identities=17% Similarity=0.244 Sum_probs=130.9
Q ss_pred CCCCCCCccc-CcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 201 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 201 ~~~~~~~di~-G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.|..+|++.+ |... +...+.++...+...+ ..+.++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4566788875 5433 2334444332211000 1233679999999999999999999976 6888899887
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++...+.......-...|.... ..+.+|+|||++.+.++.. ....++..++.....+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----------~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----------TQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----------hHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7655433221111111233222 3457999999998864311 1112333332221222 2334444444
Q ss_pred CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHh-HHHH
Q 011400 355 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM-QPLR 427 (487)
Q Consensus 355 p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~-~a~r 427 (487)
|. .+++++++||. ..+.+..|+.++|..|++..+.......+ ..++.++....+- .+.|...+...+. .+..
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~d-ir~L~g~l~~l~~~~a~~ 324 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSN-VKSLLHALTLLAKRVAYK 324 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH
Confidence 54 46789999995 67888999999999999998876554332 2245577766643 3344443333321 1222
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
+. ...+||.++++++|+.+
T Consensus 325 ~~-----------------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 325 KL-----------------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred Hh-----------------hCCCCCHHHHHHHHHHh
Confidence 21 11347888888888765
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=149.40 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=127.4
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE---Eec
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---ISA 273 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~---v~~ 273 (487)
+.+.+++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 345678889999999999999999988542 345678999999999999999999988542110 001
Q ss_pred ccch---h---h---ccC---CcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 274 SSVV---S---K---WRG---DSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 274 ~~l~---~---~---~~g---~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... + . ..+ .....++.+.+.+... ...|++|||+|.|... ..+.|+..|+
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE 143 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE 143 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh
Confidence 0000 0 0 001 1234466666655532 3469999999987432 3556888887
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
. .+..+++|.+|+.++.|.+.+++|+. .+.|..++.++....++..+...+...+ ..+..+|..+.|-
T Consensus 144 E---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs 212 (725)
T PRK07133 144 E---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS 212 (725)
T ss_pred c---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 3 33446666777888999999999996 5999999999999888887765544322 2255566666653
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=131.14 Aligned_cols=184 Identities=15% Similarity=0.183 Sum_probs=113.6
Q ss_pred CCCCccc--CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 204 VKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 204 ~~~~di~--G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
.+|++++ +.+.+.+.+++++.. ..+.+++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 4567765 466688888876531 245689999999999999999999977 57888999887753
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.. ..++... ..+.+|+|||+|.+..... ....+...++.....+. .+|++++..+..+
T Consensus 80 ~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~~~~~-~iIits~~~~~~~ 137 (226)
T TIGR03420 80 AD--------PEVLEGL--EQADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVREAGG-RLLIAGRAAPAQL 137 (226)
T ss_pred hH--------HHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCC-eEEEECCCChHHC
Confidence 22 2222222 2346999999998853210 01123333332222222 3344344344333
Q ss_pred --c-HHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 359 --D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 359 --d-~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
. +.+.+|+. ..+.++.|+.+++..+++.++....... +..++.++.. -+-+.+++..+++++.
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 2 78888884 6788999999999999988765433321 2224445553 3345556666665543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=146.08 Aligned_cols=196 Identities=18% Similarity=0.333 Sum_probs=118.7
Q ss_pred CCCCCCCccc-CcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.+..+|++++ |... +...+.+.... + ...++++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~-------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----P-------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----c-------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667788876 5332 22333333221 1 113569999999999999999999986 46788999
Q ss_pred cccchhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+..... ..+.. |.......+.+|+|||++.+.++.. ....++..++.....+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~-----------~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG-----------VQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH-----------HHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8877655432211 11222 2222223578999999998864311 11223333333322333 345545
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
...|.. +.+.+.+||. ..+.+.+|+.++|..|++..+....... +..++.||+...| +.++|..++...
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 566654 5678888985 4578899999999999999886544332 2235667776665 345555555443
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=153.19 Aligned_cols=154 Identities=22% Similarity=0.370 Sum_probs=106.9
Q ss_pred hcCCCCCCCCcccCcHHHHH---HHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~---~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
....++.+|+|++|++.+.. .|...+.. ....+++||||||||||++|+++|+.++.+++.+++.
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 33455778999999999884 45555532 1234799999999999999999999999999888875
Q ss_pred cchhhccCCcHHHHHHHHHHHH-----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~-----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
... .+.++..+..+. .....+|||||+|.+.... .+.|+..++. ..+++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q-------------QdaLL~~lE~-----g~IiLI 141 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ-------------QDALLPWVEN-----GTITLI 141 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH-------------HHHHHHHhcC-----ceEEEE
Confidence 321 112233333321 1234699999999885321 2335555542 234555
Q ss_pred EEe-CCC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCC
Q 011400 350 AAT-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 350 atT-n~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
++| ..+ ..+++++++|+ ..+.+++++.++...+++..+.
T Consensus 142 ~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 142 GATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 544 333 56899999997 4589999999999999999875
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=147.70 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=125.3
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 344567788999999999999999988542 234668999999999999999999987531
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+... .
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------a 135 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------A 135 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------H
Confidence 12222111 0112334454444432 23469999999987422 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~ 407 (487)
.+.|+..++.. ... +++|.+|+.++.+.+++++|+. .+.+..|+.++...+++.++...+...+ ..++.++..+.
T Consensus 136 ~naLLk~LEep--p~~-~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 136 FNALLKTLEEP--PPR-TIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHHhcC--CCC-eEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 45577777732 223 4455566777888889999996 4899999999999999998876554322 23555666666
Q ss_pred CCcHHHHHHHHH
Q 011400 408 GYSGSDIRLVSK 419 (487)
Q Consensus 408 G~sg~dI~~L~~ 419 (487)
|- .+++..+++
T Consensus 212 G~-lr~al~~Ld 222 (486)
T PRK14953 212 GG-MRDAASLLD 222 (486)
T ss_pred CC-HHHHHHHHH
Confidence 53 333333333
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=148.89 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=125.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC----------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~---------- 266 (487)
+.+.+++.+|++++|++.+++.|...+... ..++++||+||||+|||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 445667888999999999999999887432 34577999999999999999999998742
Q ss_pred --------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 267 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 267 --------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
.++.++++.. ..-..++.+.+.+... ...|++|||+|.|... .
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A 135 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------A 135 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------H
Confidence 2333332210 1223355555544332 2359999999988422 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. .+..+++|.+|+.+..+.+++++|+. .+.+..|+.++....++..+...+... +..+..++..+.
T Consensus 136 ~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 136 WNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3568888873 23345666777888999999999996 599999999999988888776544322 223555666666
Q ss_pred CC
Q 011400 408 GY 409 (487)
Q Consensus 408 G~ 409 (487)
|-
T Consensus 212 Gd 213 (605)
T PRK05896 212 GS 213 (605)
T ss_pred Cc
Confidence 53
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=146.51 Aligned_cols=246 Identities=25% Similarity=0.349 Sum_probs=159.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g- 282 (487)
..|+|++++|+.+..++.....+..+.... -..+.++||+||||||||++|+++|+.++.+|+.+++..+.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 348999999999998886543222221111 113578999999999999999999999999999999987775 6887
Q ss_pred CcHHHHHHHHHHHH------------------------------------------------------------------
Q 011400 283 DSEKLIKVLFELAR------------------------------------------------------------------ 296 (487)
Q Consensus 283 ~se~~l~~~f~~a~------------------------------------------------------------------ 296 (487)
..+..++.+++.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44555555555550
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 011400 297 ------------------------------------------------------------------------HHAPSTIF 304 (487)
Q Consensus 297 ------------------------------------------------------------------------~~~p~IL~ 304 (487)
..+.+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01346999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhccccccCC
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 373 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~~~ 373 (487)
|||||+++....+. ...-...-++..||..++|-.. ...+|++|++- ..|.+|-|.|..||..++.+.
T Consensus 255 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 333 (443)
T PRK05201 255 IDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD 333 (443)
T ss_pred EEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 99999999764321 1122223477788999987421 22457777664 346667789999999999999
Q ss_pred CCCHHHHHHHHHH----hCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhc---
Q 011400 374 LPDTEARRAMFES----LLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEG--- 435 (487)
Q Consensus 374 ~Pd~eeR~~IL~~----~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~~-------a~rr~~~~le~--- 435 (487)
..+.++...||.. +++.+. .+- .++| |+...|+.+.+.|... -+|++...++.
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~--------~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQ--------ALL-ATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHH--------HHH-hhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 9999998888743 221111 000 0122 5666677777766641 23444333332
Q ss_pred -hhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 436 -RQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 436 -~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
.....+... .....|+.+-+...+..+
T Consensus 405 d~~Fe~p~~~-~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 405 DISFEAPDMS-GETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HHhccCCCCC-CCEEEECHHHHHHHHHHH
Confidence 222233332 223558888877776654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-13 Score=147.55 Aligned_cols=174 Identities=20% Similarity=0.265 Sum_probs=113.4
Q ss_pred HhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh--------
Q 011400 193 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 264 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------- 264 (487)
+.+.+....++.+|++++|.+...+.+...+..+ .+.+++|+||||||||++|+.+++..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 4455555667888999999999999887766332 24579999999999999999998765
Q ss_pred --CCcEEEEecccchh-------hccCCcHHH----HHHHHHH----------HHhcCCcEEEechhhhHHhhhcccchh
Q 011400 265 --KTTFFNISASSVVS-------KWRGDSEKL----IKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 265 --~~~~i~v~~~~l~~-------~~~g~se~~----l~~~f~~----------a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
+.+|+.+++..+.. .+.|..... .+..+.. ......++|||||++.|....
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~------ 281 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL------ 281 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH------
Confidence 35789999876521 111111000 0000110 012234799999998875431
Q ss_pred hHHHHHHHHHHHHHhcCCc--------------------------CCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 322 HEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~--------------------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
...|+..++.-. .....+++.+||+.++.+++++++||.. +.++++
T Consensus 282 -------Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pl 353 (615)
T TIGR02903 282 -------QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPL 353 (615)
T ss_pred -------HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCC
Confidence 222333332210 1112344445667788899999999965 688889
Q ss_pred CHHHHHHHHHHhCCCCC
Q 011400 376 DTEARRAMFESLLPSQT 392 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~ 392 (487)
+.++...|++..+....
T Consensus 354 s~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 354 TPEDIALIVLNAAEKIN 370 (615)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999876543
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=149.48 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=127.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|+..+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 44567888999999999999999988542 245679999999999999999999988542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHH
Confidence 22222111 0112344444433322 3346999999998842 235
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.|..++.++...+++..+....... +..+..++..+.|
T Consensus 137 naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 137 NALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 567777773 334466666777788899999999964 88999999999988888775544332 2335556666665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -dlR~alslLd 222 (563)
T PRK06647 213 -SVRDAYTLFD 222 (563)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=142.03 Aligned_cols=180 Identities=25% Similarity=0.363 Sum_probs=118.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhh------cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-h
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYF------TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-K 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~------~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~ 279 (487)
+-|+|++++++.+...+..+...-... ........++||+||||||||++|+++|..++.+|..+++..+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 347999999999988774332221110 001122468999999999999999999999999999999887753 5
Q ss_pred ccCCc-HHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCcC----C------C
Q 011400 280 WRGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----S------D 343 (487)
Q Consensus 280 ~~g~s-e~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----~------~ 343 (487)
|+|.. +..+..++..+ ....++||||||+|.+..++.+....... ...+++.||..|+|... . .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77764 34444444322 23456899999999998754322111111 12567778888876531 1 1
Q ss_pred CcEEEEEEeCCCC--------------------------------------------------cccHHHHhhccccccCC
Q 011400 344 ELVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVP 373 (487)
Q Consensus 344 ~~VlVIatTn~p~--------------------------------------------------~Ld~aL~rRf~~~i~~~ 373 (487)
...++|.|+|-.. .+.|+++.|++.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 2356677766510 02345555788878888
Q ss_pred CCCHHHHHHHHHH
Q 011400 374 LPDTEARRAMFES 386 (487)
Q Consensus 374 ~Pd~eeR~~IL~~ 386 (487)
+.+.++..+|+..
T Consensus 317 pL~~~~L~~Il~~ 329 (413)
T TIGR00382 317 KLDEEALIAILTK 329 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 8888888888765
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=136.32 Aligned_cols=177 Identities=24% Similarity=0.244 Sum_probs=117.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|...+.+.+|+|++|.+.+++.|..++... ...+++|+||||||||++++++++++. ..++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 455667788999999999999999887431 123589999999999999999999873 334555
Q ss_pred ecccchhhccCCcHHHHHHHH-HHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCc
Q 011400 272 SASSVVSKWRGDSEKLIKVLF-ELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f-~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 345 (487)
++++.. ....+...+ ..+.. ..+.+|+|||+|.+... ..+.|+..++.... .
T Consensus 75 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~ 132 (319)
T PRK00440 75 NASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---N 132 (319)
T ss_pred cccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---C
Confidence 443321 111122221 22211 22459999999988432 12335555654332 2
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
..+|.++|.+..+.+++.+|+.. +.++.++.++...+++.++....... +..++.+++.+.|
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred CeEEEEeCCccccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 34555777778888889999964 89999999999999998886655432 2335666666655
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=139.85 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=118.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN------- 270 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~------- 270 (487)
.+..++.+|++|+|++.+++.|+..+... ..++++||+||||+|||++|+++|+.+...-..
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 34567888999999999999999887542 345679999999999999999999998652100
Q ss_pred ---Eecccc------h-------hhccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 271 ---ISASSV------V-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 271 ---v~~~~l------~-------~~~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
-.|..- . ..+.+ .....++.+.+.+.. ....|++|||+|.+...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------- 142 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------- 142 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------
Confidence 011000 0 00011 113445555444421 12359999999988432
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t 406 (487)
..+.|+..++. .....++|.+|+.+..+.+++++|+. .+.+..++.++-...++..+....... +..++.++..+
T Consensus 143 ~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 143 AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 23446777763 22234455566667888889999995 589999999888888888776544322 22345566666
Q ss_pred cC
Q 011400 407 EG 408 (487)
Q Consensus 407 ~G 408 (487)
.|
T Consensus 219 ~g 220 (397)
T PRK14955 219 QG 220 (397)
T ss_pred CC
Confidence 55
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=141.48 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=120.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
+.+++.+|+||+|++.+++.|...+... ..++.+|||||||+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 3456788999999999999999988542 245679999999999999999999987432
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.+++... ..-..++.+.+... .....|++|||+|.+... ..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HH
Confidence 223322111 01123333332222 234579999999988432 24
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. ...+++|++|+.+..+.+++++|+.. +.+..++.++....++..+...+...+ ..++.++..+.|
T Consensus 139 n~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 139 NSLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHHhhcC---CCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888742 23455666778888899999999954 899999999988888887765443322 234556666654
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-13 Score=128.86 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=123.4
Q ss_pred CCCCCCccc--CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 202 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~--G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
++.+|++++ +.+.+...+.++... .....+++|+||+|||||+||+++++++ +.+++.+++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 456688876 345666666665531 1244689999999999999999999976 678888887765
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p- 355 (487)
... +. ....+.+|+|||+|.+... ....|+..++........+++++++..|
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 321 11 1223579999999987321 1122444444333333333444333333
Q ss_pred -CcccHHHHhhc--cccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 356 -WELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 356 -~~Ld~aL~rRf--~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
..+.+.+++|| ...+.+++|+.+++..+++..........+ ..++.+++...| +.+++..+++.....+..
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~---- 209 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE---- 209 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH----
Confidence 23568888898 467899999998998888877654443322 224455554333 344444444432221111
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...+||...++++|.
T Consensus 210 ---------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 ---------------QKRPVTLPLLREMLA 224 (227)
T ss_pred ---------------hCCCCCHHHHHHHHh
Confidence 124689999999886
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=148.28 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=130.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS---- 272 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~---- 272 (487)
+.+.+++.+|+||+|++.+++.|...+... +.++++||+||+|+|||++|+.+|+.+.......+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 344567788999999999999999988542 34678999999999999999999998864321111
Q ss_pred ---------cccchhh-------c---cCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 273 ---------ASSVVSK-------W---RGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 273 ---------~~~l~~~-------~---~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
|..+... . ....-..++.+++.+... ...|++|||+|.|.. ...
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHH
Confidence 0000000 0 001234566666655432 346999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. ...+.+|.+|+.++.+.+.+++|+. .+.|..++.++...+++..+.......+ ..++.++..+.|
T Consensus 150 naLLKtLEeP---p~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 150 NALLKTLEEP---PPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHHhC---CCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5677777732 3335556667777788889999995 5999999999999999988866554433 235556666665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 226 -dlr~al~~Ld 235 (598)
T PRK09111 226 -SVRDGLSLLD 235 (598)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=131.02 Aligned_cols=195 Identities=22% Similarity=0.322 Sum_probs=116.3
Q ss_pred CCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.|..+|+.++ | .+.+..........+- .....++||||+|+|||+|++++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3677899975 5 3445555555443321 123469999999999999999999875 57789999
Q ss_pred cccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+...... .+..+.+..+ ...+|+|||++.+..+ ......|...++.....+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 88876554322211 1222222222 3479999999998643 1233445555554444444 345555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~dI~~L~~~ 420 (487)
...|.. +++.+.+||. ..+.+..|+.++|..|++..+.......+.+ ++.+++...+ +.++|..++..
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 566654 6788999985 4678899999999999999987766654333 4556666553 44556555544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=139.20 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=122.3
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---- 273 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~---- 273 (487)
...+++.+|+|++|++.+++.+...+... ..++++|||||||+|||++|+++++.+..+.....+
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34567888999999999999999988542 345789999999999999999999987542111000
Q ss_pred ---ccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 274 ---SSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 274 ---~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
.++ ..........++.+++.+... .+.||+|||+|.+... ..+.|+..++.. ....
T Consensus 77 ~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~~---~~~~ 139 (367)
T PRK14970 77 FNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP---PAHA 139 (367)
T ss_pred cceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhCC---CCce
Confidence 001 001112234566666655432 3469999999977432 235566666632 2234
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
++|.+++.+..+.+++.+|+. .+.+..|+.++...++...+...+... +..++.++..+.|
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 455567777889999999995 489999999999988888776655432 2335556665554
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=145.22 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=129.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
...+++.+|++++|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567888999999999999999988442 34566899999999999999999998732
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++.+- ..-..++.+....... ...|++|||+|.+.. ...
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~ 134 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EAF 134 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 1333332110 1124455555443211 235999999988843 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.+..+.+++++|+. .+.|..++.++....++..+...+... +..+..++..+.|
T Consensus 135 NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 135 NALLKTLEEP---PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHHHHHhhc---CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 3335566667778999999999985 589999999998888888776654432 2335566666665
Q ss_pred CcHHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEAA 422 (487)
Q Consensus 409 ~sg~dI~~L~~~A~ 422 (487)
+.+++..++..+.
T Consensus 211 -dlR~alnlLdqai 223 (535)
T PRK08451 211 -SLRDTLTLLDQAI 223 (535)
T ss_pred -cHHHHHHHHHHHH
Confidence 4455555554443
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=143.76 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=109.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|... -..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 5678999998887665433222222223322 2346899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-C---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
. ....|+..++.....+..+ || |++.+ . .+++.|++||. ..+.+..||.+.|.+||+..+.
T Consensus 394 ~-----------tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S-----------TQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H-----------HHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1122334444333333333 33 55554 3 47889999994 5568889999999999999987
Q ss_pred CCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 390 SQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 390 ~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
....... ..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 7655433 235667777664 345565555543
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=130.11 Aligned_cols=134 Identities=25% Similarity=0.276 Sum_probs=91.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------chhhccCCcHHH-HHH-------------------HHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFE 293 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~------l~~~~~g~se~~-l~~-------------------~f~ 293 (487)
..++||+||||||||++|+++|+.+|.+++.+++.. +.+.+.+..... +.. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 223332221111 111 111
Q ss_pred HHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----C---------CCCcEEEEEEeCCCC----
Q 011400 294 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----Q---------SDELVFVLAATNLPW---- 356 (487)
Q Consensus 294 ~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----~---------~~~~VlVIatTn~p~---- 356 (487)
.|.. .+.+|+|||++.+.++ +.+.|+..++.-. . ......||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 2469999999986432 3344555554211 0 112456888999763
Q ss_pred -cccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 357 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 357 -~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
.+++++++|| ..+.++.|+.++..+|++...
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 5789999999 558999999999999999875
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=144.23 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=123.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
..+++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+...
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4556788999999999999999988642 234579999999999999999999998652
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++.. .......++.+++.+... ...|++|||+|.|.. ..
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a 137 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------AA 137 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------HH
Confidence 2222211 123345667777665432 235999999998842 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. ....+++|++|+.+..+-+.+++|+.. +.|..++.++....+...+....... ...+..+++.+.
T Consensus 138 ~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 138 FNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 4668888873 233455666777888888999999955 88888888887777777665443322 223555666666
Q ss_pred CCc
Q 011400 408 GYS 410 (487)
Q Consensus 408 G~s 410 (487)
|-.
T Consensus 214 G~l 216 (620)
T PRK14948 214 GGL 216 (620)
T ss_pred CCH
Confidence 543
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=125.36 Aligned_cols=146 Identities=23% Similarity=0.273 Sum_probs=92.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
..++|+||+|||||+|++++++++ +....+++..++.. .+...++... ...+|+|||++.+.....+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 459999999999999999998875 56666776544321 2223333332 3469999999988643211
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhc--cccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf--~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
. ..++..++.....+. -+|+++...|.. +++++++|| ...+.++.|+.+++.++++.......
T Consensus 112 --------~---~~lf~l~n~~~~~~~-~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 112 --------E---VALFDFHNRARAAGI-TLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred --------H---HHHHHHHHHHHHcCC-eEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 123333332222222 233334445554 478999997 45678999999999999998765443
Q ss_pred CC-CCCCHHHHHHHhcC
Q 011400 393 GE-ESLPYDLLVERTEG 408 (487)
Q Consensus 393 ~~-~~~~l~~la~~t~G 408 (487)
.. ++..++.|++.+.|
T Consensus 180 l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 180 LALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 33 22335667777664
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=143.53 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=140.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE--EEEec-
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNISA- 273 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~--i~v~~- 273 (487)
+.+.+++.+|+|++|++.+.+.|...+..- +-.+++||.||.|||||++||.+|+.+++.- ..-.|
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 456678888999999999999999998653 3346799999999999999999999886541 10011
Q ss_pred -----ccchhh-------ccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 274 -----SSVVSK-------WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 274 -----~~l~~~-------~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
.++... +.+ ..-..++.+.+.+.. ..+.|.+|||+|.|. ....+.||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 111100 001 122345555555432 335699999998764 456777888
Q ss_pred HhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 011400 335 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 413 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~d 413 (487)
.++ ..+..|.+|.+|..+..++..+++|+.+ +.|..-+.++-...|...+.......+.+ +..+|+..+| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 887 4556688888999999999999999966 88888888898888998887776664433 5666776666 4456
Q ss_pred HHHHHHHHHh
Q 011400 414 IRLVSKEAAM 423 (487)
Q Consensus 414 I~~L~~~A~~ 423 (487)
...++..+..
T Consensus 217 alslLDq~i~ 226 (515)
T COG2812 217 ALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-13 Score=146.55 Aligned_cols=187 Identities=25% Similarity=0.386 Sum_probs=144.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--- 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el--- 264 (487)
...++..+++.......+++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|...
T Consensus 151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g 218 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNG 218 (786)
T ss_pred hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence 345567777878888889999999999999999988653 33678999999999999999999977
Q ss_pred -------CCcEEEEecccchh--hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 -------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 -------~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+..++.++.+.+.. +|.|+.++.++.+.+......+.||||||+|.+.+.....+...++.+-++..|
T Consensus 219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--- 295 (786)
T COG0542 219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--- 295 (786)
T ss_pred CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---
Confidence 57788998888874 799999999999999999888899999999999886443221122333333333
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES 396 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~ 396 (487)
.++. +-+|++|+.. -+-|+||-|||.. |.+..|+.++-..||+.+-..+...+.
T Consensus 296 -----ARGe-L~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 296 -----ARGE-LRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred -----hcCC-eEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 2333 4456666433 2468999999977 999999999999999988765554444
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-13 Score=141.16 Aligned_cols=168 Identities=13% Similarity=0.202 Sum_probs=108.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHH---HHHHHHHHHHhcCCcEEEechhhhH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~---~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
.++++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999965 4678899988877665433221 122222222 34579999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFE 385 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~ 385 (487)
.++. .....|...++.....+. . +|.|++. |. .+++.+++||. ..+.+..|+.++|.+|++
T Consensus 219 ~~k~-----------~~~e~lf~l~N~~~~~~k-~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYKE-----------KTNEIFFTIFNNFIENDK-Q-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHcCC-c-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 5431 112234444443333333 2 3445544 43 36789999995 567788899999999999
Q ss_pred HhCCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011400 386 SLLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM 423 (487)
Q Consensus 386 ~~l~~~~~---~~~~~l~~la~~t~G~sg~dI~~L~~~A~~ 423 (487)
..+..... -.+..++.|+..+.| +.+.+..++..+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 99876442 122235667777775 45666666665543
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=139.41 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=119.9
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE--------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 270 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-------- 270 (487)
+.+++.+|++|+|++.+++.|+..+... .-++++||+||+|||||++|+.+|+.+...--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 4567888999999999999999877442 345679999999999999999999998652100
Q ss_pred --Eeccc------ch-------hhccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 271 --ISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 271 --v~~~~------l~-------~~~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
-.|.. +. ..+.+ .....++.+.+.+.. ....|++|||+|.+... .
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------A 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------H
Confidence 00100 00 00111 112345555444421 22359999999988432 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~ 407 (487)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|..++.++-...++..+...... .+..++.++..+.
T Consensus 144 ~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 144 FNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 45688888732 2334455566677888889999994 58999999998888888777654432 2233566666666
Q ss_pred C
Q 011400 408 G 408 (487)
Q Consensus 408 G 408 (487)
|
T Consensus 220 G 220 (620)
T PRK14954 220 G 220 (620)
T ss_pred C
Confidence 5
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=141.89 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=123.4
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.+...
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35667888999999999999999887542 234568999999999999999999988532
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++... ......++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~a 136 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------AA 136 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------HH
Confidence 12222110 1122334444443332 2245999999998742 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~ 407 (487)
.+.|+..++... ..+++|.+++.++.+.+.+++|+.. +.|..++..+...+++..+...+...+ ..+..++..+.
T Consensus 137 ~naLLk~LEepp---~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 137 FNALLKTLEEPP---PHAIFILATTEVHKVPATILSRCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHHhcCC---CCeEEEEEeCChhhhhHHHHhccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 455777777432 3355566677777888899999954 889999999988888887765543322 22555666666
Q ss_pred CCcHHHHHHHH
Q 011400 408 GYSGSDIRLVS 418 (487)
Q Consensus 408 G~sg~dI~~L~ 418 (487)
| +.+++.+++
T Consensus 213 G-dlr~al~~L 222 (585)
T PRK14950 213 G-SMRDAENLL 222 (585)
T ss_pred C-CHHHHHHHH
Confidence 5 334443333
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=145.64 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=136.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-----hcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-----~~~ 281 (487)
..|+|++++++.|.+.+...... + .....|..++||+||||||||.+|+++|..++.+++.++++++.. ...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~g--l-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAG--L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhcc--c-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 35899999999999988643210 0 001234457999999999999999999999999999999887643 222
Q ss_pred CCcHH-----HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--cC------CCCcEEE
Q 011400 282 GDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------SDELVFV 348 (487)
Q Consensus 282 g~se~-----~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~~~~VlV 348 (487)
|.... .-..+.+..+....+||||||||++.+ .+.+.|+..|+.- .. .-.++++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 21110 011233344555668999999999853 3566688877632 11 1145778
Q ss_pred EEEeCCC-------------------------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-------CCCCCC
Q 011400 349 LAATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEES 396 (487)
Q Consensus 349 IatTn~p-------------------------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-------~~~~~~ 396 (487)
|+|||.- ..+.|.++.|++.++.|++.+.++..+|+...+.. ......
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~ 681 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLE 681 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCce
Confidence 8899832 12567888899999999999999999998876532 122222
Q ss_pred CC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011400 397 LP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 397 ~~---l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
.+ ++.|++.. ..|-.+.|+.+++.-...++.+.
T Consensus 682 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 682 VSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred ECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 22 34455432 23445677777776666666654
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=134.03 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=101.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~--i~v~ 272 (487)
.+..|++|+|++++++.|.-.+..+ ...|+||+|+||||||++|+++++-+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 3567999999999999888654321 22589999999999999999999988 2211 1110
Q ss_pred c-ccc--------h---------------hhccCCc--HHHHH---HHHHHH--HhcCCcEEEechhhhHHhhhcccchh
Q 011400 273 A-SSV--------V---------------SKWRGDS--EKLIK---VLFELA--RHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 273 ~-~~l--------~---------------~~~~g~s--e~~l~---~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
+ .++ . +...|.. +..+. ..|..- .....++|||||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 000 0 0011100 00000 001100 011126999999998753
Q ss_pred hHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCCH-HHHHHHHHHhC
Q 011400 322 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 388 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd~-eeR~~IL~~~l 388 (487)
.+++.|+..|+.-. ..+..+++++++|..+ .+++++++||...+.++.|.. ++|.+|++...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 34455666665321 1234577777777644 589999999999999988855 89999998854
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-12 Score=122.66 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=98.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
+.++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 679999999999999999999865 5778888887765421 122222232 26999999998754311
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
....|+..++.....+ ..++++++..|.. ..+.+++||. ..+.+..|+.+++..+++.......
T Consensus 115 ----------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ----------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1123444444333333 3456666655543 3688999994 5567789999999999996554433
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 393 GEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 393 ~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
... +..++.+++...+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 322 2235556666654 3334444333
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=112.50 Aligned_cols=138 Identities=40% Similarity=0.622 Sum_probs=90.9
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHH
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
|.+...+.+...+.. ...++++++||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666665533 235689999999999999999999998 88999998877654432211111
Q ss_pred ---HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC---CCcEEEEEEeCCCC--ccc
Q 011400 288 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW--ELD 359 (487)
Q Consensus 288 ---l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~VlVIatTn~p~--~Ld 359 (487)
............+.+|+|||++.+... ....++..+...... ...+.+|++++... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 122233344556789999999987321 112244444433221 34567788888776 788
Q ss_pred HHHHhhccccccCC
Q 011400 360 AAMLRRLEKRILVP 373 (487)
Q Consensus 360 ~aL~rRf~~~i~~~ 373 (487)
+.+.+||..++.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998766665
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-12 Score=130.28 Aligned_cols=224 Identities=21% Similarity=0.239 Sum_probs=141.7
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEecccchhhc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW 280 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-----~i~v~~~~l~~~~ 280 (487)
-+.+.+.+...+++...+.-.+.. ..|.++++|||||||||.+++.+++++... +++|||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 355899999999999887554432 234569999999999999999999998433 8999997765432
Q ss_pred c---------------CCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 281 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 281 ~---------------g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
. |.+ ......+++.... ....||++||+|.|..+.+ .++-.|+...+.. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~---~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN---K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc---c
Confidence 1 222 2233333333333 3456999999999986532 3333344433322 4
Q ss_pred CcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCCCC--CC-HHHHHHHhcCCcHHHHH-
Q 011400 344 ELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEES--LP-YDLLVERTEGYSGSDIR- 415 (487)
Q Consensus 344 ~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~--~~-l~~la~~t~G~sg~dI~- 415 (487)
.++.+|+.+|..+ .+|+.+.+++. ..|.|++++.+|...|++........... .+ ++.+|......+| |.+
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 5688899998874 58899999874 45799999999999999998764322221 12 3333333222222 322
Q ss_pred --HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 416 --LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 416 --~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.+++.|+..|-++ .. ..++.+++.+|...+.+....
T Consensus 234 aidilr~A~eiAe~~---------------~~---~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 234 AIDILRRAGEIAERE---------------GS---RKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred HHHHHHHHHHHHHhh---------------CC---CCcCHHHHHHHHHHhhHHHHH
Confidence 2444444443332 11 347888888886666555443
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=142.10 Aligned_cols=204 Identities=22% Similarity=0.235 Sum_probs=135.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~------- 279 (487)
+.|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 56899999999998887542110 01111344468999999999999999999999999999998876432
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcE
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 346 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~V 346 (487)
|+|..+ ...+.+..+....+||+|||+|.+.+ .+.+.|++.+++-. ..-.+.
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 223221 12234445566778999999998753 35566777777431 112346
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC-------CCC
Q 011400 347 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 394 (487)
Q Consensus 347 lVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-------~~~ 394 (487)
++|+|||... .+.|.++.|++.++.|.+.+.++..+|++..+... ...
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887641 14677888999999999999999999999887431 111
Q ss_pred CC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 011400 395 ES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 395 ~~---~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
.. ..++.+++. ...|-.+.|+.+++.....++.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 11 123445554 23455566776666666655554
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=135.72 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=123.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC------------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 266 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~------------ 266 (487)
+.+++.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+.+|+.+.+
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 3467788999999999999999988542 34567999999999999999999998753
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++.+ ......++.+.+.+... ...|++|||+|.|.. ...
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHH
Confidence 222332211 11234566666555432 234999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. +...++|.+|+.+..+-+++++|+.. +.|..++.++-...++..+...+...+ ..++.++..+.|
T Consensus 139 naLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 139 NAFLKTLEEP---PSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 23344556666778899999999955 999999999988888887766555433 235667777765
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=126.24 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=104.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEe-
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS- 272 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~v~- 272 (487)
.+...|++|+|++++|..|.-.+..| ...+|||.||+|||||++||++++.+. .+|....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34567999999999999999887664 235899999999999999999988662 2222000
Q ss_pred -----cccchh---------------hc----cCCcHHHH------HHHHHHHH---------hcCCcEEEechhhhHHh
Q 011400 273 -----ASSVVS---------------KW----RGDSEKLI------KVLFELAR---------HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 273 -----~~~l~~---------------~~----~g~se~~l------~~~f~~a~---------~~~p~IL~IDEiD~L~~ 313 (487)
+..+.. .+ .|.++..+ ...+.... ....++|||||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000000 00 11122211 11111110 11237999999998864
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcC---------Cc-CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCC-HHHHH
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARR 381 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd-~eeR~ 381 (487)
. +++.|+..|+. .. ..+.++++|+|.|..+ .+.+++++||...+.+..|+ .+++.
T Consensus 159 ~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 H-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHH
Confidence 3 33446666643 11 1233566777666554 59999999999999999997 69999
Q ss_pred HHHHHhC
Q 011400 382 AMFESLL 388 (487)
Q Consensus 382 ~IL~~~l 388 (487)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998864
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=126.75 Aligned_cols=167 Identities=17% Similarity=0.284 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+.+.++||||+|+|||+|++|++++. +..+++++...+...++......-..-|+... +-.+++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999987 45688888888776665444333333344444 447999999999976
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhC
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l 388 (487)
+.. ...+|...+..+...+. -+|+++...|.. +.+.|++||. ..+.+.+|+.+.|..||+...
T Consensus 190 k~~-----------~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KER-----------TQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Chh-----------HHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 522 23334455554444444 345555566655 5589999995 556788999999999999977
Q ss_pred CCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHH
Q 011400 389 PSQTGEESL-PYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 389 ~~~~~~~~~-~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
......... .+..+|..... +.+++..++..
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~ 289 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNR 289 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHH
Confidence 666655333 35556666553 34455544443
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=115.26 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=133.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+.+.+.+|+|.+.+|+.|.+....... ..|.++|||||..|||||+|+||+.+++ +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 4557799999999999999987754432 2577899999999999999999999988 6779999887773
Q ss_pred hhccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-CcCCCCcEEEEEEeCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 355 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~VlVIatTn~p 355 (487)
.+-.+++..+.. ..-|||+||+-- ..+....+. |-..++| +...+.+|+|.+|+|+.
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF--------e~gd~~yK~----LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF--------EEGDDAYKA----LKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC--------CCCchHHHH----HHHHhcCCcccCCCeEEEEEecCCc
Confidence 233445555542 346999999821 111122222 4445554 46777889999999987
Q ss_pred CcccH----------------------HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHH----HHHHhcC
Q 011400 356 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 408 (487)
Q Consensus 356 ~~Ld~----------------------aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~----la~~t~G 408 (487)
..|++ ++.+||+..+.|.+++.++-..|+..+++......+. .++. .|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 55431 2445999999999999999999999999877665432 2222 2333345
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
-||+--.+.++.
T Consensus 265 RSGR~A~QF~~~ 276 (287)
T COG2607 265 RSGRVAWQFIRD 276 (287)
T ss_pred CccHhHHHHHHH
Confidence 666554444443
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-13 Score=141.76 Aligned_cols=224 Identities=24% Similarity=0.301 Sum_probs=149.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.....+|++|+|......++.+.+... ...+..|||.|.+||||..+|++|.+.+ +.||+.+||+.+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 345678999999999888888776432 2455689999999999999999999977 679999999766
Q ss_pred hhh-------------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-----
Q 011400 277 VSK-------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----- 338 (487)
Q Consensus 277 ~~~-------------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----- 338 (487)
-.. |.|+...--..+|+.|.. +.||||||..|.. .++..||..++.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-------------~LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-------------PLQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-------------HHHHHHHHHHhhceEEe
Confidence 321 223222223345666555 7999999977642 344456666652
Q ss_pred ---CcCCCCcEEEEEEeCCCC--ccc-----HHHHhhccccccCCCCCHHHHHHHHHHh----CCCCCCCCCCCHHHHHH
Q 011400 339 ---LTQSDELVFVLAATNLPW--ELD-----AAMLRRLEKRILVPLPDTEARRAMFESL----LPSQTGEESLPYDLLVE 404 (487)
Q Consensus 339 ---~~~~~~~VlVIatTn~p~--~Ld-----~aL~rRf~~~i~~~~Pd~eeR~~IL~~~----l~~~~~~~~~~l~~la~ 404 (487)
.....-.|.||+|||+.- .+. +.|.=|.. ++.+..|...+|.+-+..+ +.+... ...+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~-------~~~~ 443 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSR-------RYGR 443 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHH-------HcCC
Confidence 233334588999999851 122 22222663 3778888887777544333 221111 1223
Q ss_pred HhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH-HHHhc
Q 011400 405 RTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 462 (487)
Q Consensus 405 ~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~-~AL~~ 462 (487)
...|.++..+..|.+..|.+++|++.+.+++.......+.. |+.+|+- .++..
T Consensus 444 ~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 444 NVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred CcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 35678999999999999999999999988877654433322 5666655 44444
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=121.56 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=115.7
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecccc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 276 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--------~~i~v~~~~l 276 (487)
+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+-. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 5899999999999999987432 34567899999999999999999998732 222332210
Q ss_pred hhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 277 VSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
+. .-.-..++.+.+.+.. ....|++||++|.+... ..+.|+..++. .+..+++|.+|
T Consensus 70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-------------a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-------------AQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-------------HHHHHHHHhcC---CCCCeEEEEEe
Confidence 01 1122345555543322 23459999999888422 34568888873 23335555666
Q ss_pred CCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 353 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 353 n~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
+.++.+.+.+++|+. .+.+..|+.++....++..+... ....++.++..+.|..+.
T Consensus 131 ~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 131 ENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGK 186 (313)
T ss_pred CChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHH
Confidence 788999999999995 58999999998888887654311 122244566666664443
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=122.74 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=126.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------cEEE-Eec
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFN-ISA 273 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~~i~-v~~ 273 (487)
.+..+++|+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.+.. +... ..|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4567999999999999999988543 34567999999999999999999998844 1100 011
Q ss_pred ---c-----------cch---hhc--------cCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHH
Q 011400 274 ---S-----------SVV---SKW--------RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 274 ---~-----------~l~---~~~--------~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
. ++. ..+ ..-+-..++.+.+... .....|++|||+|.|...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~---------- 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN---------- 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH----------
Confidence 0 000 000 0011233333333222 233469999999988432
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE 404 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~ 404 (487)
..+.|+..++.. ....++|..|+.|+.+.+.+++|+ ..+.+++|+.++-..+++....... ..+..+..+++
T Consensus 157 ---aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 157 ---AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred ---HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 345588888742 223445556777888889999999 5699999999999999988532211 11222456677
Q ss_pred HhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 405 RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 405 ~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
.+.|.....+ .+.........+.....+
T Consensus 229 ~s~G~pr~Al-~ll~~~~~~~~~~~~~~l 256 (351)
T PRK09112 229 RSKGSVRKAL-LLLNYGGLEIIATIDQLL 256 (351)
T ss_pred HcCCCHHHHH-HHHhcCcHHHHHHHHHHH
Confidence 7776555444 444444444333333333
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=116.45 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=110.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-C----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~----~~~i~v 271 (487)
|.+.+++..+.||+|.++..+.|.-+... ..-.+++|.|||||||||-+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 66778888899999999999999876643 123479999999999999999999988 3 235677
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHh-cCC---cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARH-HAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~-~~p---~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
++++-.+- ..-+.--..|.+-+- ..| .|+++||+|++....+ ..|-..|+-.++.. .
T Consensus 85 NASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-------------QAlRRtMEiyS~tt---R 145 (333)
T KOG0991|consen 85 NASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-------------QALRRTMEIYSNTT---R 145 (333)
T ss_pred cCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH-------------HHHHHHHHHHcccc---h
Confidence 77664321 111222234444333 222 4999999999864321 11333333223332 2
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHH-HHHHHHHhCCCCCCCCCCCHHHHHHHhcC
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEA-RRAMFESLLPSQTGEESLPYDLLVERTEG 408 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ee-R~~IL~~~l~~~~~~~~~~l~~la~~t~G 408 (487)
+..++|....+-+++.+|+.. +.+...+.++ ...+++..-.+...-.+.-++.+.-..+|
T Consensus 146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 567899999999999999855 5554444443 33333333222222223334544444444
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-11 Score=120.83 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc---CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR---GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~---g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
...+|||+||||||||++|+++|..++.+|+.++...-..... .........-+-.+. ..+++|+|||++.+.+..
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 3457999999999999999999999999999998421111111 111111111122222 235799999999875432
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-----------CcccHHHHhhccccccCCCCCHHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEA 379 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-----------~~Ld~aL~rRf~~~i~~~~Pd~ee 379 (487)
... ....+-..++...++.......+.+|+|+|.+ ..+++++++||. .+.++.|+..|
T Consensus 197 q~~-----L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~~E 265 (383)
T PHA02244 197 LII-----INSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEKIE 265 (383)
T ss_pred HHH-----HHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcHHH
Confidence 110 00000011111222222223457788999974 358999999995 58999998433
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-11 Score=114.04 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=99.1
Q ss_pred CCCCCCCcccCcH---HHHHHHHHHHhccccCchhhcCCCCC-CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 201 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 201 ~~~~~~~di~G~e---~~k~~L~e~l~~~l~~~~~~~~~~~~-~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.+..+|++++--+ .+...++++...+- ..| .+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~---------~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGFG---------VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHccc---------cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4566788865433 35555555432110 122 2679999999999999999999987753322 1110
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
. ...+ ....+|+|||+|.+- .. .|...++.+...+. .++++++..|.
T Consensus 79 -------~----~~~~-----~~~d~lliDdi~~~~-------------~~---~lf~l~N~~~e~g~-~ilits~~~p~ 125 (214)
T PRK06620 79 -------N----EEIL-----EKYNAFIIEDIENWQ-------------EP---ALLHIFNIINEKQK-YLLLTSSDKSR 125 (214)
T ss_pred -------c----hhHH-----hcCCEEEEeccccch-------------HH---HHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence 0 0111 123699999998441 01 13333332223333 55666666664
Q ss_pred c--ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 357 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 357 ~--Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
. + +++++|+. ..+.+..|+.+++..+++..+....... +..++.|++...+
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR 181 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 3 6 78999995 3588899999999999998876544332 2335667776664
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=121.56 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=99.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEE--------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 269 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i-------- 269 (487)
.|..|+|++++|..|.-.+..| ...+++|.|+||+|||+++++++.-+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987766543 23579999999999999999999876 22221
Q ss_pred -EEecc-------------------cch-----hhccCCcH--HHH--------HHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 270 -NISAS-------------------SVV-----SKWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 270 -~v~~~-------------------~l~-----~~~~g~se--~~l--------~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
..+|. ++- +...|... +.+ ..++.. ...++|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 00000 000 01111110 000 001111 12379999999987433
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCC---------c-CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCCH-HHHHH
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 382 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~---------~-~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd~-eeR~~ 382 (487)
+++.|+..|+.- . ..+.+++++++.|..+ .+++++++||...+.++.|+. ++|.+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 344466666421 1 1223567777777554 599999999999999999865 88999
Q ss_pred HHHHhC
Q 011400 383 MFESLL 388 (487)
Q Consensus 383 IL~~~l 388 (487)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=136.43 Aligned_cols=204 Identities=22% Similarity=0.234 Sum_probs=132.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
+.|+|++.+++.+.+.+...... ......|...+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 56899999999999988553210 00011233348999999999999999999998 457889988776432
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------CC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 343 (487)
|+|..+. ..+....+..+++||+|||||++.+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3333221 1233445667789999999987643 34455677776321 1 11
Q ss_pred CcEEEEEEeCCCCc-----------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC---
Q 011400 344 ELVFVLAATNLPWE-----------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~-----------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~--- 391 (487)
.+.+||+|||.... +.+++++|++ ++.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678889885210 4567777996 68889899999999998876432
Q ss_pred -----CCCCCC---CHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHHH
Q 011400 392 -----TGEESL---PYDLLVERTEG--YSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 392 -----~~~~~~---~l~~la~~t~G--~sg~dI~~L~~~A~~~a~rr~ 429 (487)
...... .++.|++...+ |-.+.+..+++.-...++.+.
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 221111 24456665433 456777777776666666553
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-10 Score=115.45 Aligned_cols=129 Identities=22% Similarity=0.157 Sum_probs=83.4
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC------------CCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~------------p~~Ld~aL~rRf~ 367 (487)
|+||||||++.|- -..++.|-..|+ ..-.++ ||.+||+ |+.++..|++|.
T Consensus 292 pGVLFIDEvHmLD-------------IE~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLD-------------IECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhh-------------HHHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 7899999998762 223333444444 222334 5567765 456899999999
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 446 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~ 446 (487)
.+|...+++.++-++|++..........+ ..++.|+.....-|-+.--+|+.-|...|.+|
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 56888889999999999999877666533 23566666555444444444544444444443
Q ss_pred CCCCCCHHHHHHHHhccC
Q 011400 447 QIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 447 ~~~~It~eD~~~AL~~~~ 464 (487)
....|..+|++.|-.-+-
T Consensus 416 g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 GSKRVEVEDVERAKELFL 433 (450)
T ss_pred CCCeeehhHHHHHHHHHh
Confidence 113488999999987554
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=134.49 Aligned_cols=156 Identities=22% Similarity=0.298 Sum_probs=105.4
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh--------------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 264 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------------------- 264 (487)
.|.+|+|++.+|..|.-....+ ...+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999998887766543 12479999999999999999999987
Q ss_pred ---------------CCcEEEEecccchhhccCCc--HHHHH--------HHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 265 ---------------KTTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 265 ---------------~~~~i~v~~~~l~~~~~g~s--e~~l~--------~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
..+|+.+.+........|.. ++.+. .++.. ...+||||||++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCHH-----
Confidence 24666666554333333321 11110 01111 12269999999988533
Q ss_pred hhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCC-CcccHHHHhhccccccCCCC-CHHHHHHHHHHh
Q 011400 320 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 387 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p-~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~ 387 (487)
+++.|+..|+.-. .....+.+|+|+|.. ..+.++|++||...+.++.+ +.+++.++++..
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 4455777775211 112347788888853 35889999999988888776 567888888765
Q ss_pred C
Q 011400 388 L 388 (487)
Q Consensus 388 l 388 (487)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=122.89 Aligned_cols=183 Identities=18% Similarity=0.166 Sum_probs=119.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------------- 267 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-------------- 267 (487)
.+..+++|+|++.+++.|...+... +.++.+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 5667999999999999999988552 345689999999999999999999987211
Q ss_pred --------------------EEEEecc--cchhhc-cCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccch
Q 011400 268 --------------------FFNISAS--SVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 268 --------------------~i~v~~~--~l~~~~-~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
++.+... +-.... ..-.-..++.+...+. ...|.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 1111100 000000 0001223444443332 24567999999998742
Q ss_pred hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHH
Q 011400 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD 400 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~ 400 (487)
...+.|+..++. .....++|.+|+.++.+.+.+++|+.. +.+++|+.++-.+++...... ..+..+.
T Consensus 156 ------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 156 ------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccceE-EECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 334568888873 223355667888888899999999954 899999999999998876422 1111124
Q ss_pred HHHHHhcCCcHHHHH
Q 011400 401 LLVERTEGYSGSDIR 415 (487)
Q Consensus 401 ~la~~t~G~sg~dI~ 415 (487)
.++..+.|-.+..+.
T Consensus 223 ~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 223 ALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHcCCCHHHHHH
Confidence 566666665554433
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=121.96 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=94.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccc-chhhccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASS-VVSKWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~-l~~~~~g~ 283 (487)
..++|.+++++.+...+. ...+|||+||||||||++|++++..++. +|..+.+.- ......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 468999999998887762 3468999999999999999999998753 444443321 11222221
Q ss_pred c-HHHH--HHHHHHHHhc---CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------CCCCcEEEEE
Q 011400 284 S-EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 350 (487)
Q Consensus 284 s-e~~l--~~~f~~a~~~---~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~VlVIa 350 (487)
. -... ..-|...... ...+||+|||..+. ..+.+.|+..|+.-. ..-...++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 1112111110 22499999997654 345566777774221 1112244555
Q ss_pred EeCCCCc---ccHHHHhhccccccCCCCC-HHHHHHHHHHh
Q 011400 351 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 387 (487)
Q Consensus 351 tTn~p~~---Ld~aL~rRf~~~i~~~~Pd-~eeR~~IL~~~ 387 (487)
+||...+ ..+++.+||...+.+++|+ .++..+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6674322 3459999998889999996 56667788764
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-11 Score=120.33 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=94.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCcHH----------HHHHHHHHHHhcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEK----------LIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~se~----------~l~~~f~~a~~~~p~IL~IDE 307 (487)
.++|||.||||||||++++.+|..++.+++.+++...... ..|...- .....+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999988665543 3443211 11122333333 347899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHH-----hcCC---cCCCCcEEEEEEeCCCC------------cccHHHHhhcc
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQ-----MDGL---TQSDELVFVLAATNLPW------------ELDAAMLRRLE 367 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~-----ld~~---~~~~~~VlVIatTn~p~------------~Ld~aL~rRf~ 367 (487)
+|...++. ...++.+|+. +.+. -.......||+|.|... .++.++++||.
T Consensus 143 in~a~p~~----------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGRPDV----------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccCHHH----------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 99874431 1222223331 1110 01223477889999754 37999999998
Q ss_pred ccccCCCCCHHHHHHHHHHhCC
Q 011400 368 KRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
..+.++.|+.++..+|+.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhcc
Confidence 8789999999999999987654
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=130.02 Aligned_cols=206 Identities=22% Similarity=0.284 Sum_probs=135.1
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
..|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 56999999999999988543210 00111345679999999999999999999987 568999988775432
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------CC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 343 (487)
|+|..+ ...+....+....+||+||||+.+.+ .+.+.|++.++.-. . .-
T Consensus 642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 122111 12233444555667999999997743 34556777775321 1 12
Q ss_pred CcEEEEEEeCCCCc-------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-------C
Q 011400 344 ELVFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------Q 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~-------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-------~ 391 (487)
.+.+||+|||.... +.+.|+.|++.++.|.+++.++..+|+...+.. .
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 34678889987321 335677799999999999999999998877642 1
Q ss_pred CCCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 392 TGEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 392 ~~~~~~~---l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
......+ ++.|++.. ..+..+.|+.+++......+.+.+
T Consensus 787 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 787 KITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred CCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111222 34455542 245667888888877777766543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=131.18 Aligned_cols=204 Identities=24% Similarity=0.270 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~---- 279 (487)
..|+|++++...+...+..... -+....+|..++||.||+|+|||-||+++|..+. ..++.+++++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 5689999999999988844221 1112234556789999999999999999999995 78999999988644
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--CC------C
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS------D 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~------~ 343 (487)
|+|.-+ -..+.+..+.+.++||++|||++-. ..+.+-|++.||.-. .. -
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAH-------------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 444433 2235566677788999999998764 447788999998431 11 1
Q ss_pred CcEEEEEEeCCCCc----------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC----
Q 011400 344 ELVFVLAATNLPWE----------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~----------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~---- 391 (487)
.+.+||+|||--.. ..|+++.|++.+|.|.+.+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34778899974310 3567777999999999999999999988776332
Q ss_pred ---CCCCCC---CHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHH
Q 011400 392 ---TGEESL---PYDLLVERTE--GYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 392 ---~~~~~~---~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr 428 (487)
...... ..+.++.... .|-++-|+.++++-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 221111 1344555432 344455655555554444443
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-12 Score=119.61 Aligned_cols=46 Identities=46% Similarity=0.650 Sum_probs=37.9
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.|+||+|++.+|+.|.-+... .+++||+||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 389999999999999987743 4689999999999999999999865
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-11 Score=120.92 Aligned_cols=155 Identities=26% Similarity=0.342 Sum_probs=101.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~s 284 (487)
..++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|...... ..|..
T Consensus 24 ~~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 24 KVVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CeeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 347887877777766553 34689999999999999999999999999999998654322 22221
Q ss_pred HHHHH----HHHHHHHh--cCC--cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----cC-----CCCcEE
Q 011400 285 EKLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ-----SDELVF 347 (487)
Q Consensus 285 e~~l~----~~f~~a~~--~~p--~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~-----~~~~Vl 347 (487)
.-... ..+..... ... +|+++|||+...+ .+.+.|+..|+.. .. -....+
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~ 156 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFI 156 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCE
Confidence 11110 00000000 011 3999999987643 3555677777641 11 124467
Q ss_pred EEEEeCC-----CCcccHHHHhhccccccCCCC-CHHHHHHHHHHhC
Q 011400 348 VLAATNL-----PWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 388 (487)
Q Consensus 348 VIatTn~-----p~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~l 388 (487)
|++|.|. ...+++++++||...++++.| +.++...++....
T Consensus 157 viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 7778783 345899999999888999999 5555555555544
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=129.62 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=128.0
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
.+.|+|++.+++.+...+......- ...-.|...+||+||||||||++|++||+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 3568999999999998885432100 0001233468999999999999999999987 457899988776432
Q ss_pred ---------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--cC------C
Q 011400 280 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------S 342 (487)
Q Consensus 280 ---------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~ 342 (487)
|+|..+. ..+....+....+||+|||++.+.+ .+.+.|+..++.- .. .
T Consensus 644 ~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 644 SRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred HHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCceecCCceEEe
Confidence 1121111 1122333444558999999987643 2445566766532 11 1
Q ss_pred CCcEEEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC------
Q 011400 343 DELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ------ 391 (487)
Q Consensus 343 ~~~VlVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~------ 391 (487)
-.+.+||+|||... .+.++++.|++.++.|.+++.++...|++..+...
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 13456788988631 14568888999989999999999999888777442
Q ss_pred -CCCCCCC---HHHHHHHhcCCc----HHHHHHHHHHHHhHHHHHH
Q 011400 392 -TGEESLP---YDLLVERTEGYS----GSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 392 -~~~~~~~---l~~la~~t~G~s----g~dI~~L~~~A~~~a~rr~ 429 (487)
......+ ++.|+. .||+ .+.|+.+++.-....+.+.
T Consensus 789 ~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 789 RGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred CCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 1211222 233333 2443 4667776666666655543
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=115.90 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=104.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------------------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 265 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--------------------- 265 (487)
++++|.+.+...+........ ..++.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888888887775321 2334699999999999999999999986
Q ss_pred ---CcEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 266 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 266 ---~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
-.++.++.++..... .....++.+....... ...|++|||+|.+..+ ..+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-
Confidence 467777776654321 1234455544433322 3469999999999653 3445667776
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHH
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~ 385 (487)
.......+|.+||.++.+-+.+++|+.. +.|.+|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence 3344466788999999999999999955 7887776665555544
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=111.55 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=103.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
..++|+||+|+|||+|++++++..+..+ ++...+... ++..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence 4599999999999999999998876543 333322211 1111111 58999999976211
Q ss_pred hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC
Q 011400 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 395 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~ 395 (487)
+ ..|...++.....+ ..+|++++..|.. ..+.+++|+. ..+.+..|+.++|.++++..+.......
T Consensus 103 ~--------~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 E--------TGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred H--------HHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1 11344443333333 3455555555532 3678999994 6688999999999999999987654432
Q ss_pred -CCCHHHHHHHhcCCcHHHHHHHH---HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 396 -SLPYDLLVERTEGYSGSDIRLVS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 396 -~~~l~~la~~t~G~sg~dI~~L~---~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
+..++.|++...+ +++.+. ......+.. ..++||...++++|+.+
T Consensus 174 ~~ev~~~La~~~~r----~~~~l~~~l~~L~~~~~~-------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER----SLFAAQTIVDRLDRLALE-------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHH-------------------hCCCCCHHHHHHHHHhh
Confidence 2335667776663 333322 222111111 12458999999999865
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=131.14 Aligned_cols=205 Identities=21% Similarity=0.249 Sum_probs=132.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
+.|+|++.+++.+...+...... ......|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 56899999999999888543210 01112344568999999999999999999987 467888888765321
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 343 (487)
|+|..+ ...+.+..+....+||+|||+|++.+ .+.+.|++.++.-. ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence 233222 12344555666668999999998743 35566778777421 112
Q ss_pred CcEEEEEEeCCCCc-------------------------------------ccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 344 ~~VlVIatTn~p~~-------------------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
.+.++|+|||.... +.|.++.|++.++.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45778889875311 23467779999899999999999999887
Q ss_pred hCCCC-------CCCCCC---CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 387 LLPSQ-------TGEESL---PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 387 ~l~~~-------~~~~~~---~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
.+... ...... ..+.+++. ...|-.+.|+.+++.-...++.+.
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 76432 111111 13445554 223445667777666666655543
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=117.28 Aligned_cols=195 Identities=21% Similarity=0.193 Sum_probs=121.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 281 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~---- 281 (487)
++|.....+++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 3566666666666553322 234679999999999999999998866 47999999987642211
Q ss_pred -CCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCc
Q 011400 282 -GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 345 (487)
Q Consensus 282 -g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 345 (487)
|... .....+|..+ ..++||||||+.|... ++..|+..++.-. .....
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 1000 0001123333 3479999999988543 3334555554321 11234
Q ss_pred EEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----h-cCCcHHH
Q 011400 346 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----T-EGYSGSD 413 (487)
Q Consensus 346 VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t-~G~sg~d 413 (487)
+.+|++|+.. ..+.+.|..|+.. +.+..|...+|.+-+..++... +..++.. . .+++...
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQEDIMLLAEHF-------AIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCcCHHH
Confidence 6788888754 2355677778854 6677777777765443332111 1112221 2 4688889
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchh
Q 011400 414 IRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 414 I~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+..|.+..|.++++++.+.++...
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 999999999999998887776543
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=122.47 Aligned_cols=201 Identities=21% Similarity=0.238 Sum_probs=136.2
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 279 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~- 279 (487)
....+++|.....+++.+.+... ......|||+|++||||..+|++|.+.. +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45789999999999999887443 2345679999999999999999999987 469999999876432
Q ss_pred ----ccCC----cHHH---HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------c
Q 011400 280 ----WRGD----SEKL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T 340 (487)
Q Consensus 280 ----~~g~----se~~---l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~ 340 (487)
..|. .... ....|+.|.. ++||||||..+.. .++..|+..++.- .
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCCc
Confidence 1111 1111 1123444433 7999999987753 2444466666522 2
Q ss_pred CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HhcCC
Q 011400 341 QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGY 409 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~----~t~G~ 409 (487)
.-.-.|-||++||..- .+-+.|.-|+ .++.+..|...+|.+-+-.++... +...++ ...++
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hf-------l~~~~~~~~~~~~~~ 343 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHF-------LKRFAAELGRPPKGF 343 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHH-------HHHHHHHcCCCCCCC
Confidence 2223588999998752 1344555577 448888998888886443332111 122222 24578
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 410 SGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++..+..|.+..|.+++|++.+.+++..-
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999988876543
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=115.27 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=120.9
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 267 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------- 267 (487)
.|++|+|++.+++.|...+... +-++++||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4899999999999999988553 345689999999999999999999987221
Q ss_pred -EEEEecccch-hh--------ccC--------CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 268 -FFNISASSVV-SK--------WRG--------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 268 -~i~v~~~~l~-~~--------~~g--------~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
++.+...... ++ ..| -.-..++.+.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222111000 00 000 011234555444432 2346999999998843
Q ss_pred HHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 011400 326 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 405 (487)
Q Consensus 326 ~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~ 405 (487)
...+.|+..++... . .++|..|+.++.+-+.+++|+.. +.|+.++.++..++|+....... .+.+...++..
T Consensus 139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhceE-EecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 23456888887432 3 34566777889999999999955 99999999999999887643211 11124677777
Q ss_pred hcCCcHHHHHHH
Q 011400 406 TEGYSGSDIRLV 417 (487)
Q Consensus 406 t~G~sg~dI~~L 417 (487)
+.|-.+..+..+
T Consensus 211 a~Gs~~~al~~l 222 (314)
T PRK07399 211 AQGSPGAAIANI 222 (314)
T ss_pred cCCCHHHHHHHH
Confidence 777666555533
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=106.04 Aligned_cols=111 Identities=28% Similarity=0.341 Sum_probs=69.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCcH------HHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE------KLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~se------~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+|||+||||||||++|+.+|+.++.+++.+++...... ..|... ......+..+. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999887654321 111100 00000000000 145899999998764
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcC----------CCC------cEEEEEEeCCCC----cccHHHHhhc
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 366 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~----------~~~------~VlVIatTn~p~----~Ld~aL~rRf 366 (487)
..++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 ------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2344456666653210 111 278999999988 7999999998
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=107.43 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccchhhccCCcHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~i~v~~~~l~~~~~g~se~~l~~~f~~ 294 (487)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45679999999999999999999987432 22221110 0 0123455555555
Q ss_pred HHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011400 295 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 370 (487)
Q Consensus 295 a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i 370 (487)
+.. ....|++|||+|.+... ..+.|+..++.. +....+|.+|+.+..+.+++++|+. .+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~~-~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRCQ-VL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhcE-Ee
Confidence 543 23469999999988532 234577888742 2234566667777899999999995 69
Q ss_pred cCCCCCHHHHHHHHHHh
Q 011400 371 LVPLPDTEARRAMFESL 387 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~ 387 (487)
.+.+|+.++...+++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999888876
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=125.30 Aligned_cols=216 Identities=26% Similarity=0.282 Sum_probs=134.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+..++++++|.+...+++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345689999999998888888775432 234579999999999999999999876 5799999998773
Q ss_pred hhc-----cCCcHHH-------HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C--
Q 011400 278 SKW-----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 341 (487)
Q Consensus 278 ~~~-----~g~se~~-------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~-- 341 (487)
... .|..... ....+.. ...++||||||+.|... +...|+..++.-. .
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 321 1110000 0001222 23479999999998543 3344666664321 0
Q ss_pred ----CCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHh
Q 011400 342 ----SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 406 (487)
Q Consensus 342 ----~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t 406 (487)
....+.+|++|+.. ..+.+.|..|+.. +.+.+|...+|.+ |+.+++...... ....
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~- 394 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINV-VPIFLPPLRERREDIPLLAEAFLEKFNRE-------NGRP- 394 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcC-CeeeCCCcccccccHHHHHHHHHHHHHHH-------cCCC-
Confidence 11236678887654 2355667777743 5566666655543 444444321100 0011
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 011400 407 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 457 (487)
Q Consensus 407 ~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~ 457 (487)
.+++...+..|.+..|.++++++.+.++........ ..|+.+|+.
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~------~~I~~~~l~ 439 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRS------GTITRSDFS 439 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCc
Confidence 368888899999999999999988877765432211 236666653
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=118.80 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=89.2
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEec----c
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-------~i~v~~----~ 274 (487)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+... .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677888888887776663 24689999999999999999999988431 222322 1
Q ss_pred cchhhc----cCCc--HHHHHHHHHHHHh--cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------
Q 011400 275 SVVSKW----RGDS--EKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 338 (487)
Q Consensus 275 ~l~~~~----~g~s--e~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------- 338 (487)
++...+ .|-. ...+..+...|.. ..|.+|+|||++..... ++..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH------------Hhhhhhhhhccccccccccc
Confidence 222122 1110 1123344455554 35789999999875432 222223333331
Q ss_pred -----------CcCCCCcEEEEEEeCCCC----cccHHHHhhccccccCCC
Q 011400 339 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 339 -----------~~~~~~~VlVIatTn~p~----~Ld~aL~rRf~~~i~~~~ 374 (487)
.-..+.++.||+|+|..+ .+|.|++|||.. +.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 012235689999999987 699999999955 66654
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=101.49 Aligned_cols=128 Identities=30% Similarity=0.413 Sum_probs=81.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhh--------------ccCCcHHHHHHHHHHHHhcCCcE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~--------------~~g~se~~l~~~f~~a~~~~p~I 302 (487)
+.+++|+||||||||++++.+|..+... ++.+++...... .........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999765 888887654322 12334556777888888877899
Q ss_pred EEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-CCcccHHHHhhccccccCCCC
Q 011400 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 303 L~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-p~~Ld~aL~rRf~~~i~~~~P 375 (487)
|+|||++.+.......... .......... ........+|+++|. ....+..+.+|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLL----LLEELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHH----hhhhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999999886542211000 0000000001 112233567778886 344555666677777766544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=114.60 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=125.5
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
+++++|.+...+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999988888888775543 234579999999999999999998766 478999999886321
Q ss_pred --ccCCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CC
Q 011400 280 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 342 (487)
Q Consensus 280 --~~g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~ 342 (487)
+.|... ......+..+ ..++|||||+|.|... +...|+..++.-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111110 0001122222 3479999999998643 3334555554321 11
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-----hcCCc
Q 011400 343 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER-----TEGYS 410 (487)
Q Consensus 343 ~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~-----t~G~s 410 (487)
...+.||++|+.. ..+.+.|..||.. +.+.+|...+|.+-+..++... +..++.. ..+++
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~~s 210 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHF-------AIQMCRELGLPLFPGFT 210 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCCC
Confidence 1246778777664 2356778888844 5677777777765333322110 1111221 14688
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
...+..|.+..|.++++++.+.++..
T Consensus 211 ~~al~~L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 211 ERARETLLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 88888899999999988887766654
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-11 Score=127.97 Aligned_cols=204 Identities=24% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH-----------hCCcEEEEe
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 272 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e-----------l~~~~i~v~ 272 (487)
..|++++|.....+++.+.+...- ....+|||+|++||||+++|++|.+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468999999998888888774432 23467999999999999999999987 357999999
Q ss_pred cccchhhc-----cCCcH--------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 273 ASSVVSKW-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 273 ~~~l~~~~-----~g~se--------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
|..+.... .|..+ ..-..+|+.+. .++||||||+.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 98764321 11110 01112344333 379999999988543 334466666532
Q ss_pred c--------CCCCcEEEEEEeCCCC-c------ccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHH
Q 011400 340 T--------QSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYD 400 (487)
Q Consensus 340 ~--------~~~~~VlVIatTn~p~-~------Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~ 400 (487)
. ...-.+.+|++|+..- . +.+.+..|+.. +.+.+|...+|.+ ++++++..........
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 1 1122357888887652 1 23345556633 6777887777764 3344443211100111
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 401 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 401 ~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+.....++....+..|.+..|.+++|++.+.+++..
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~ 462 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLA 462 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 111122223344567778888888888877766543
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-10 Score=112.76 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=103.8
Q ss_pred CCCcccC-cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------------
Q 011400 205 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 267 (487)
Q Consensus 205 ~~~di~G-~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------------- 267 (487)
.|++|+| ++.+++.|...+... ..++.+||+||+|+||+++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 3888888 999999999887432 356778999999999999999999987321
Q ss_pred --------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 268 --------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 268 --------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+..+... +. .-.-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 2222111 00 0122344554444331 2335999999988843 244568888
Q ss_pred hcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
++. .+..+++|.+|+.+..+.+++++|+.. +++..|+.++...+++.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhcee-eeCCCCCHHHHHHHHHH
Confidence 883 334455666888888999999999955 89999998888777764
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-10 Score=120.68 Aligned_cols=198 Identities=21% Similarity=0.206 Sum_probs=126.5
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 280 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~- 280 (487)
...+++|.....+.+.+.+...- .....|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999988888775532 345679999999999999999999976 5799999998874321
Q ss_pred ----cCCcHH-------HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 281 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 281 ----~g~se~-------~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
.|.... .....|..+ ..++|||||||.|... +...|+..++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 111000 001123332 2479999999998643 2334555554321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HhcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~----~t~G~s 410 (487)
....+.||++|+..- .+.+.|..|+.. +.+.+|...+|.+-+..+.... +..++. ...+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~f-------l~~~~~~~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYF-------LEQNRARLGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHH-------HHHHHHHcCCCCCCCC
Confidence 112467888887652 255666667744 6677888777765333222100 111121 223577
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
...+..|.+.-|.++++++.+.++..
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra 416 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRA 416 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 88888888888888888877766654
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-09 Score=102.57 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC-cEEE---Eec----cc----chhh----ccCCcH-H---HHHHHH-HHHHhcC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT-TFFN---ISA----SS----VVSK----WRGDSE-K---LIKVLF-ELARHHA 299 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~-~~i~---v~~----~~----l~~~----~~g~se-~---~l~~~f-~~a~~~~ 299 (487)
..++|+||+|+|||++++.+++++.. .+.. +++ .+ +... ..+... . .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 111 01 1111 111111 1 122211 2233456
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC---cc----cHHHHhhccccccC
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV 372 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~---~L----d~aL~rRf~~~i~~ 372 (487)
+.+|+|||++.+... ....+....+........+.|+.+ ..|+ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHhheeeeeeC
Confidence 679999999987422 111121111111112222333333 3332 11 23466788888899
Q ss_pred CCCCHHHHHHHHHHhCCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 447 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~-----~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~ 447 (487)
+..+.++..+++...+...... .+..++.+.+.+.|... .|..+|..+...+..+-
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~------------------ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE------------------ 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC------------------
Confidence 9999999999998887543321 22346778889999865 59999999988876631
Q ss_pred CCCCCHHHHHHHHhccC
Q 011400 448 IGPIRPEDVEIALKNTR 464 (487)
Q Consensus 448 ~~~It~eD~~~AL~~~~ 464 (487)
...|+.++++.++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 13599999999998765
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-10 Score=121.48 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=44.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.|..-|++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3455689999999999999987743 2489999999999999999999998654
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=119.99 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=125.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.....|++++|.....+++.+.+.... .....|||+|++||||+++|+++.... +.+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456789999999987777776664321 223569999999999999999998765 4689999998874
Q ss_pred hhc-----cCCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-----
Q 011400 278 SKW-----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----- 340 (487)
Q Consensus 278 ~~~-----~g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----- 340 (487)
... .|... .....+|+.+. .++||||||+.|... +...|+..++.-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 321 11110 00112343332 379999999998643 2334555554311
Q ss_pred ---CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHH----HHHhCCCCCCCCCCCHHHHHHH-
Q 011400 341 ---QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYDLLVER- 405 (487)
Q Consensus 341 ---~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~I----L~~~l~~~~~~~~~~l~~la~~- 405 (487)
.....+.||++|+.+- .+.+.|..|+.. +.+..|...+|.+- ++.++.. ++..
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~-----------~~~~~ 399 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVAR-----------FADEQ 399 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHH-----------HHHHc
Confidence 1112466788876642 245667778754 67777777776643 2333321 1211
Q ss_pred ---hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 406 ---TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 406 ---t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
..+++...+..|.+..|.++++++.+.++...
T Consensus 400 g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred CCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 22577778888888888888888777666543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-10 Score=112.47 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=101.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccchhhccCCcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~i~v~~~~l~~~~~g~se~~l~~~f~ 293 (487)
+.++.+||+||+|+|||++|+++|+.+... ++.+...+- + ..-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 456789999999999999999999988431 222221100 0 0112345555555
Q ss_pred HHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011400 294 LARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 369 (487)
Q Consensus 294 ~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~ 369 (487)
.+.. ....|++||++|.+.. ...+.|+..++. .+..+++|.+|+.++.+.+.+++|+..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~~- 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQQ- 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhcee-
Confidence 4433 3346999999999853 345668888884 334567778999999999999999966
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011400 370 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 370 i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~d 413 (487)
+.|++|+.++-...+...... ..+.....++..+.|-.+..
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLRA 200 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHHH
Confidence 999999999888888765421 11222344556666655433
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-10 Score=123.84 Aligned_cols=218 Identities=21% Similarity=0.234 Sum_probs=133.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 279 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~ 279 (487)
...|++++|.....+.+.+.+...- ....+|||+|++||||+++|++|.+.. +.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3668999999998888888774432 234679999999999999999999865 579999999876432
Q ss_pred c-----cCCcH--------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 280 W-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 280 ~-----~g~se--------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
. .|..+ .....+|+.+. .++||||||+.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 1 11100 01122344333 379999999988543 3344666654321
Q ss_pred --CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHH----HHHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~I----L~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
...-.+.+|++|+..- .+.+.|..|+.. +.+.+|...+|.+- +.+++...... .--
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~----------~~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAA----------LRL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHH----------cCC
Confidence 1112356788887652 133344446633 66777777777653 33444322111 011
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 408 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 408 G~sg~dI~~-------L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
++++..+.. |.+..|.+++|++.+.++...-..... ....|+.+|+...+
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~---~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAM---PAGALTPDVLRALA 467 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC---CCCccCHHHhhhhc
Confidence 356666666 889999999999888777654322110 01247777765433
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=116.94 Aligned_cols=206 Identities=20% Similarity=0.184 Sum_probs=129.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhcccc------Cc-----------hhhcCC-----CCCCeeEEEEcCCCChH
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK------YP-----------KYFTGL-----LSPWKGILLFGPPGTGK 253 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~------~~-----------~~~~~~-----~~~~~gvLL~GppGtGK 253 (487)
-|+..+.+..|.|+.|.+.+-+.+..++..+-- .. +.+... .++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 355566677899999999999988887733210 00 111111 13335688999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHH--------hcCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 254 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR--------HHAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 254 T~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~--------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
||||+.||++.|..+++|++++-.+ ...++..+..|- ..+|..|+|||||--.
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------- 400 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------- 400 (877)
T ss_pred hHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------
Confidence 9999999999999999999988643 233333333322 1468899999998432
Q ss_pred HHHHHHHHHHhc-------CCcCC-----------CCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHH
Q 011400 326 RRLKTELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 326 ~~i~~~Ll~~ld-------~~~~~-----------~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~ 385 (487)
...++.++..+. |-... .-...||+.+|+.. -|+|+. -|..+++|..|...-..+=|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHH
Confidence 222333333332 11100 01134788999865 455654 678888999888877777777
Q ss_pred HhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 386 SLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 386 ~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
.++...+...+ ..+..|++.+. .||+.-++.....+.
T Consensus 479 ~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 479 EICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLAS 516 (877)
T ss_pred HHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence 77765554432 22444555444 588776665554443
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.5e-10 Score=115.74 Aligned_cols=147 Identities=26% Similarity=0.329 Sum_probs=112.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc-CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 316 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~-g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~ 316 (487)
.+-.++||+||||+|||.||..+|...+.||+.+-.++-+-.+. .+--..++.+|+.|....-+||++|+++.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 45578999999999999999999999999999876554332221 112246889999999988899999999999742
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHHhhccccccCCCCCH-HHHHHHHHHh
Q 011400 317 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFESL 387 (487)
Q Consensus 317 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~rRf~~~i~~~~Pd~-eeR~~IL~~~ 387 (487)
.......++.++..|+..+......+++.+|++||.+...|.+ .+.+-|+..+++|.-+. ++..+++...
T Consensus 614 -vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 614 -VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred -cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 2334556788889999999988788888999999987655543 46778999888887644 5666666543
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=125.09 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=125.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
+..+|++++|.+...+++.+.+.... .....|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 34569999999988888777664432 234569999999999999999999876 47999999987632
Q ss_pred -----hccCCc----HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------
Q 011400 279 -----KWRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------ 341 (487)
Q Consensus 279 -----~~~g~s----e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------ 341 (487)
...|.. .......|+. ...++||||||+.|... +...|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 122211 0000001222 23479999999988543 3334566654321 0
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH---hcCCcH
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER---TEGYSG 411 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~---t~G~sg 411 (487)
..-.+.||+||+... .+.+.|.-|+.. +.+.+|...+|.+-+..++... +..++.. ..+++.
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~~~~-------l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALVNNK-------LRSLEKRFSTRLKIDD 525 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHHHHH-------HHHHHHHhCCCCCcCH
Confidence 011466888887642 244455556633 6777888888764333222110 1111111 125778
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 412 SDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
..+..|.+..|.+++|++.+.++...
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~ 551 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLA 551 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 88888888888888888887776543
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.9e-10 Score=123.60 Aligned_cols=199 Identities=23% Similarity=0.298 Sum_probs=125.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 279 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~ 279 (487)
...|++++|.....+.+.+.+.... ....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3568899999998888887775432 234579999999999999999999866 579999999876422
Q ss_pred -----ccCC--------cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 280 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 280 -----~~g~--------se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
..|. ..... ..++.+ ..++||||||+.+... +...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 11111 223332 2479999999988543 3334555554321
Q ss_pred --CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
.....+.+|++|+..- .+...+..|+.. +.+..|...+|.+-+ +.++...... ......
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~-------~~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLVKAFTFKIARR-------MGRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHHHHHHHHHHHH-------cCCCCC
Confidence 1123467888887652 234445556633 667788888887633 3333221100 001123
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+++...+..|.+..|.++++++.+.++..
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a 605 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIERA 605 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 57777888888888888888777766554
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=105.46 Aligned_cols=115 Identities=26% Similarity=0.325 Sum_probs=76.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecccchhhccCCcHHHHHHHHHH----HHhcCCcEEEechhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFEL----ARHHAPSTIFLDEIDA 310 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~----~~i~v~~~~l~~~~~g~se~~l~~~f~~----a~~~~p~IL~IDEiD~ 310 (487)
|-..+||.||+|||||.+|+++|+.+.. +++.++++++.... ..+..+..+... .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 99999999887611 111111111111 1111225999999999
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCCc
Q 011400 311 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPWE 357 (487)
Q Consensus 311 L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~~ 357 (487)
+.+. .....+.....+.+.|+..+++-. -.-.++++|+|+|--..
T Consensus 80 a~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9875 223334445678888999887431 11245889999987543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-10 Score=119.74 Aligned_cols=166 Identities=24% Similarity=0.261 Sum_probs=100.7
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC-CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecccchhhcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v----~~~~l~~~~~ 281 (487)
.+|.|++.+|..|.-.+...... ..... ......+|||+|+||||||++|+++++.+....+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 56899999988887666442111 00011 123445899999999999999999999875443222 2222211100
Q ss_pred CC---cHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEE
Q 011400 282 GD---SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 347 (487)
Q Consensus 282 g~---se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~Vl 347 (487)
.. .+..++ ..+.. ...++++|||+|.+... ....|+..|+.-. ..+....
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00 000000 00111 12379999999988543 2334555554211 1124577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccc-cCCCCCHHHHHHHHHHhCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~l~ 389 (487)
||+|+|... .+++++++||+..+ ..+.|+.+...+|+++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 889998652 58999999998754 4578999999999988653
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-10 Score=114.36 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=90.8
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC---CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~---~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g 282 (487)
+-++|++.+|+.|.-++..+-++-..... .-....++||.||+|||||.||+.+|+.++.||..-++..+.. .|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 34799999999887655333211111101 1123367999999999999999999999999999999988875 6888
Q ss_pred CcH-HHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCC
Q 011400 283 DSE-KLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGL 339 (487)
Q Consensus 283 ~se-~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~ 339 (487)
+-- ..+..++..+. ...-+|++|||||+++.+..+.....+ ...-+...||..++|.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 754 34444444331 123379999999999987643322222 2245677899999875
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=111.51 Aligned_cols=65 Identities=37% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccch
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV 277 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~ 277 (487)
-+.++|+.++++..--.+.+-.. . --..+++||.||||||||.||-++|+++| .||+.++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~-~------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE-G------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT-T--------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHHhc-c------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 56899999999987765544221 1 12458999999999999999999999996 788877776653
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=117.76 Aligned_cols=145 Identities=28% Similarity=0.350 Sum_probs=90.3
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------------------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------------ 265 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------------------ 265 (487)
..|+|+.|++.+++.+.-.+ ....+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47899999999988776544 3446899999999999999999987431
Q ss_pred ----------CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 266 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 266 ----------~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
.||...+++.......|.........+..|. .++|||||++.+.. .++..|+..
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~-------------~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR-------------SVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH-------------HHHHHHHHH
Confidence 1222222211111111111000111222222 37999999987642 344556666
Q ss_pred hcCCc----------CCCCcEEEEEEeCCC------C-----------------cccHHHHhhccccccCCCCCHH
Q 011400 336 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 336 ld~~~----------~~~~~VlVIatTn~p------~-----------------~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
|+.-. .....+.+|+++|.- . .+..++++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112357788888852 1 3788999999999999887755
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-09 Score=114.69 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=89.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhhccCCcH--HHHH-H--HHH--HHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDSE--KLIK-V--LFE--LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~~~g~se--~~l~-~--~f~--~a~~~~p~IL~IDEiD~L 311 (487)
.+|||.|+||||||++|+++++.+.. +|+.+......+...|... ..+. . .|. .......++|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998754 5888875333333333320 0000 0 000 000112269999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCC---cccHHHHhhccccccCC-CCCH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVP-LPDT 377 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~---~Ld~aL~rRf~~~i~~~-~Pd~ 377 (487)
.+. +++.|+..|+.-. .....+.||+|+|..+ .+.+++++||...+.+. .|+.
T Consensus 97 ~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQ 163 (589)
T ss_pred CHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCH
Confidence 543 4455777775221 1123467888888765 69999999999877665 4688
Q ss_pred HHHHHHHHHhC
Q 011400 378 EARRAMFESLL 388 (487)
Q Consensus 378 eeR~~IL~~~l 388 (487)
++|.+|++..+
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 88999998876
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=120.35 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=109.3
Q ss_pred eeEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcC------CcEEEech
Q 011400 241 KGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA------PSTIFLDE 307 (487)
Q Consensus 241 ~gvLL~G--ppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~------p~IL~IDE 307 (487)
-+-+..| |++.||||+|+++|+++ +.+++++++++..+ -..++.+...+.... ..|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456678 99999999999999998 56899999987522 234555554433222 35999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+|.|... ..+.|+..|+. ....+.+|++||.+..+.+++++|+.. +.|+.|+.++-...++..
T Consensus 639 aD~Lt~~-------------AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 639 ADALTQD-------------AQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cccCCHH-------------HHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhceE-EeCCCCCHHHHHHHHHHH
Confidence 9998532 34558888873 234567888999999999999999944 899999998888888887
Q ss_pred CCCCCCC-CCCCHHHHHHHhcCCcHHHH
Q 011400 388 LPSQTGE-ESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 388 l~~~~~~-~~~~l~~la~~t~G~sg~dI 414 (487)
+...... .+..+..++..+.|-....|
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7654433 23346677777777554444
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-10 Score=120.04 Aligned_cols=152 Identities=28% Similarity=0.354 Sum_probs=99.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
+...+..|||...+..++.+.+.... .....|||.|.+||||..+||+|.+.. ..||+.+||+.+-.
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 35678899999999999998886543 344679999999999999999999987 57999999977642
Q ss_pred h-----ccCCcHHH----H---HHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------C
Q 011400 279 K-----WRGDSEKL----I---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------G 338 (487)
Q Consensus 279 ~-----~~g~se~~----l---~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~ 338 (487)
. ..|..... + +.-|+.|. .+.||+|||-.|... ++..||..++ +
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHH-------------HHHHHHHHHhhcceeecCC
Confidence 2 12221111 1 11233333 379999999776432 2333444443 2
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHh---------hccccccCCCCCHHHHHH
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLR---------RLEKRILVPLPDTEARRA 382 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~r---------Rf~~~i~~~~Pd~eeR~~ 382 (487)
-..-.-.|.||++||+ +|..++++ |. .++.+.+|...||.+
T Consensus 352 ~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~ 401 (550)
T COG3604 352 DRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPE 401 (550)
T ss_pred CceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCc
Confidence 2222224889999998 44444443 45 336666777777653
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-08 Score=100.95 Aligned_cols=200 Identities=18% Similarity=0.247 Sum_probs=114.0
Q ss_pred cccCcHH---HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 208 SIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 208 di~G~e~---~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
..+|... +.+.|.+.+..|.. ....++||+|++|.|||++++.++... ..|++.+.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 3455555 44555555555432 233579999999999999999999755 24666665422
Q ss_pred chh--------------hcc--CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 276 VVS--------------KWR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 276 l~~--------------~~~--g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
--+ .+. ....+....+....+..++-+|+|||++.++.... ...+.+++.| ..+.
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~L-K~L~-- 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNAL-KFLG-- 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHH-HHHh--
Confidence 111 111 11233344455666778889999999999875421 1223333333 3332
Q ss_pred cCCCC-cEEEEEEeCCC--CcccHHHHhhccccccCCCC-CHHHHHHHHHHhCCCCCCC--CCCC----HHHHHHHhcCC
Q 011400 340 TQSDE-LVFVLAATNLP--WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGE--ESLP----YDLLVERTEGY 409 (487)
Q Consensus 340 ~~~~~-~VlVIatTn~p--~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~l~~~~~~--~~~~----l~~la~~t~G~ 409 (487)
+.-. .++.++|-.-. -.-|+.+.+||.. +.+|.. ..++...++..+-...+.. ++.. ...+-..++|.
T Consensus 177 -NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~ 254 (302)
T PF05621_consen 177 -NELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL 254 (302)
T ss_pred -hccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc
Confidence 2222 23233322111 2357889999965 555553 2334445555543333322 1222 24466778888
Q ss_pred cHHHHHHHHHHHHhHHHHH
Q 011400 410 SGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr 428 (487)
+| ++..+++.|+..|++.
T Consensus 255 iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 255 IG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred hH-HHHHHHHHHHHHHHhc
Confidence 86 6889999999998873
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-09 Score=111.32 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=148.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV 276 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~~~~l 276 (487)
+.+.+.+....+|..++...+... .....+.+.|-||||||..++.+-.++ ...|++|++-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 557778888888888776655321 123468999999999999999998866 356888888766
Q ss_pred hhh----------ccCCc------HHHHHHHHHHH-HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 277 VSK----------WRGDS------EKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 277 ~~~----------~~g~s------e~~l~~~f~~a-~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
.+. +.|+. -..+..-|... ....++||+|||+|.|....++ -|.+.++..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd-------------VlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD-------------VLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH-------------HHHHHhcCC
Confidence 542 11221 11122222211 1245789999999999875332 267777877
Q ss_pred cCCCCcEEEEEEeCCCCcc----cHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 340 TQSDELVFVLAATNLPWEL----DAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 340 ~~~~~~VlVIatTn~p~~L----d~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
...+.+++||+.+|..+.. ...+.+|++ .++.|.+++..+..+|+...+.....-....++-+|+.....||..=
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 7777788888888876532 223334654 44888999999999999999987633333334445555555555322
Q ss_pred --HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 415 --RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 415 --~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
..+|++|...+-.+.. .. .......|++-|+.+|+..+..+...
T Consensus 616 raldic~RA~Eia~~~~~---------~~--k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV---------KG--KLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHHHHHhhhhcc---------cc--cccccceeehHHHHHHHHHHhhhhHH
Confidence 2355555544433321 00 01122348999999999999877553
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=97.29 Aligned_cols=121 Identities=26% Similarity=0.353 Sum_probs=73.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-----
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 280 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----- 280 (487)
|+|.+...+++.+.+.... ..+..|||+|++||||+++|++|.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4666666666666664432 234679999999999999999999976 4789999998874321
Q ss_pred cCCc-------HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cCCCCc
Q 011400 281 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 345 (487)
Q Consensus 281 ~g~s-------e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 345 (487)
.|.. ......+++.|.. ++||||||+.|... ++..|+..++.- ....-.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1110 0011234555444 89999999998644 344466666521 111235
Q ss_pred EEEEEEeCCC
Q 011400 346 VFVLAATNLP 355 (487)
Q Consensus 346 VlVIatTn~p 355 (487)
+.||++|+.+
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 8888899864
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=103.23 Aligned_cols=144 Identities=13% Similarity=0.205 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 267 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------ 267 (487)
+....+.|...+... +.++++||+||+|+||+++|+++|+.+-..
T Consensus 7 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 445666666665432 346789999999999999999999987321
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
++.+...+ ++ .-.-..++.+.+.+.. ....|++||++|.|.. ...|.||..++ .++
T Consensus 76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp 135 (325)
T PRK06871 76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPR 135 (325)
T ss_pred EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCC
Confidence 22221110 00 1123445555444432 2335999999999853 24566888887 344
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
..+++|.+|+.++.+.+.+++|+.. +.+++|+.++-.+.|...
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCeEEEEEECChHhCchHHHhhceE-EeCCCCCHHHHHHHHHHH
Confidence 5567778898999999999999955 889999988888777764
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-10 Score=99.40 Aligned_cols=106 Identities=30% Similarity=0.359 Sum_probs=58.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-cchh-hccCC------c---HHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVS-KWRGD------S---EKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~-~l~~-~~~g~------s---e~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
||||+|+||+|||++|+++|+.++..|..|.+. ++.. ...|. . +-.-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988763 3321 11111 0 00000111 14999999987
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCC-----cccHHHHhhcc
Q 011400 311 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 367 (487)
Q Consensus 311 L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~-----~Ld~aL~rRf~ 367 (487)
..++ +++.|++.|.+-. .-+...+||+|-|..+ .|++++++||-
T Consensus 74 appk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 APPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 6544 4556777775321 2234578888888765 59999999983
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=105.37 Aligned_cols=156 Identities=27% Similarity=0.333 Sum_probs=91.7
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~ 367 (487)
.+|+||||||+++...+.+.. +.++ -++-.||-.++|-.- +..++++|++. ..|++|=|.|..||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 459999999999987542221 2222 345557777776532 23568888775 567888889999999
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhch
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGR 436 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~~-------a~rr~~~~le~~ 436 (487)
..+++...+.++-..||..--... -..+..| -.|+| |+-..|..+..-|+.. -.||+-..++.-
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sL----ikQY~aL-lkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASL----IKQYKAL-LKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHH----HHHHHHH-HhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 999999999988887775321000 0001111 11333 5666666666655532 235555444433
Q ss_pred hcc----CCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 437 QEV----APDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 437 ~~~----~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
-+. +++. ..+...|+.+-+.+-|...
T Consensus 404 LediSFeA~d~-~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 404 LEDISFEAPDM-SGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHhCccCCcC-CCCeEEEcHHHHHHHHHHH
Confidence 221 2222 2233557777777777654
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=103.45 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------E
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------F 268 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~ 268 (487)
....++|...+.. .+.++.+||+||+|+||+++|.++|+.+-.. +
T Consensus 8 ~~~~~~l~~~~~~-----------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 8 RPDYEQLVGSYQA-----------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred hHHHHHHHHHHHc-----------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4455566655533 1456789999999999999999999987221 2
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.+....- . ..-.-..++.+.+.+. .....|++||++|.|.. ...|.||+.++. ++.
T Consensus 77 ~~i~p~~~-~--~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp~ 137 (334)
T PRK07993 77 YTLTPEKG-K--SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLEE---PPE 137 (334)
T ss_pred EEEecccc-c--ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhcC---CCC
Confidence 22211100 0 0012334555444433 23346999999999853 345668888883 445
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
.+++|.+|+.++.+.+.++||+.. +.+++|+.++....|.... ... ......++..+.|-.+..+
T Consensus 138 ~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 138 NTWFFLACREPARLLATLRSRCRL-HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CeEEEEEECChhhChHHHHhcccc-ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 577888899999999999999975 8999999888887776432 111 1123345556666554443
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=96.93 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=86.6
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------------------c
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 267 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----------------------~ 267 (487)
|++.+++.|...+..- ..++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888899999887543 34567999999999999999999998721 1
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
++.++...... .-....++.+...+.. ....|++|||+|.|.. ...+.|+..|+. .+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LEe---pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLEE---PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHHS---TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhcC---CC
Confidence 23332221100 1123455555554432 2345999999998853 345678888883 34
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
..+.+|.+|+.++.+-+.+++|+.. +.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred CCEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 5577888999999999999999954 55543
|
... |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-09 Score=112.44 Aligned_cols=145 Identities=27% Similarity=0.320 Sum_probs=89.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------ 273 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~------ 273 (487)
..|.++.|...+++.+.-.+ ....+++|.||||+|||++++.++..+. ...+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36888899888777654222 3457899999999999999999998652 11122111
Q ss_pred c-----cc-----hh--------hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 274 S-----SV-----VS--------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 274 ~-----~l-----~~--------~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
. .+ .. ..+|.....-...+..|.. ++|||||++.+. ..++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHH
Confidence 0 00 00 0111111111122333333 799999997763 2345556666
Q ss_pred hcCCc----------CCCCcEEEEEEeCCCC---------------------cccHHHHhhccccccCCCCCHH
Q 011400 336 MDGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 336 ld~~~----------~~~~~VlVIatTn~p~---------------------~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
|+.-. .....+.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 64221 1234578899998752 3777999999999999988654
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=104.02 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.6
Q ss_pred CC-cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 011400 206 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 273 (487)
Q Consensus 206 ~~-di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~~i~v~~ 273 (487)
|+ +++|++++++++.+.+..... +.....+.++|+||||||||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 899999999999988855432 11233467899999999999999999999965 7887765
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-09 Score=113.24 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=96.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~ 278 (487)
...+++++|.+..-+++.+.+... .+...+||++|++||||+.+|+.|.... +.||+.+||+.+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 345889999988888888777541 2445679999999999999999998644 56899999987753
Q ss_pred hc-------------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-------
Q 011400 279 KW-------------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------- 338 (487)
Q Consensus 279 ~~-------------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------- 338 (487)
.. .| ....-..+|+.|.. ++||+|||..|.+. ....|+..+|.
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecC
Confidence 21 12 11122234444443 79999999988654 22335666653
Q ss_pred -CcCCCCcEEEEEEeCCC--CcccH--HHHh-hccccccCCCCCHHHHH
Q 011400 339 -LTQSDELVFVLAATNLP--WELDA--AMLR-RLEKRILVPLPDTEARR 381 (487)
Q Consensus 339 -~~~~~~~VlVIatTn~p--~~Ld~--aL~r-Rf~~~i~~~~Pd~eeR~ 381 (487)
-......|.+|++|+.. ..+-. .+.+ |+. +.+.+|+..+|.
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~ 253 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNI--LTITLPPLRERK 253 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhhhcC--ceecCCChhhch
Confidence 12233457788888753 22222 3444 443 455566666654
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-08 Score=100.70 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------------------EEE
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 270 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------------------~i~ 270 (487)
++.+++.|...+... +.++.+||+||+|+||+++|.++|+.+-.. ++.
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 455677777766432 345789999999999999999999977321 122
Q ss_pred Ee-cccchh-h-ccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 271 IS-ASSVVS-K-WRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 271 v~-~~~l~~-~-~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
+. ..+-.+ + ...-.-..++.+.+.+... ...|++||++|.|.. ...|.||+.++. .+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC---CC
Confidence 21 000000 0 0001233455555444322 235999999999843 245668888873 33
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 416 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~ 416 (487)
..+++|.+|+.++.+.+.+++|+.. +.|+.|+.++-...|... ... ..+...++..+.|..+..+..
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHHH
Confidence 4456777888899999999999955 889999998888777653 111 122335666777766655443
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=112.38 Aligned_cols=174 Identities=11% Similarity=0.106 Sum_probs=104.5
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec-
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA- 273 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-v~~- 273 (487)
.+...+.+.++++++|.++..+.|..++...... ..+.+.++|+||||||||++++.+|++++..+++ .+.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 4666778889999999999999999887542210 1334559999999999999999999998765543 111
Q ss_pred --ccchhhc------------cCCcHHHHHHHHHHHHh----------cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 274 --SSVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 274 --~~l~~~~------------~g~se~~l~~~f~~a~~----------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
......| .......++.++..+.. ....||||||++.+.... ...+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----------~~~l 215 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----------TRAL 215 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----------HHHH
Confidence 1000000 01122334444444431 234699999999876421 1122
Q ss_pred HHHHH-HhcCCcCCCCcEEEEEEeCCCC----------c----ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCC
Q 011400 330 TELLI-QMDGLTQSDELVFVLAATNLPW----------E----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 330 ~~Ll~-~ld~~~~~~~~VlVIatTn~p~----------~----Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
..++. ... ......+|+++|..+. . +.+++++ |. .+|.|.+.......+.|+..+..
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 22333 111 1222233444442222 1 3467876 55 35889999998877777777754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-10 Score=115.54 Aligned_cols=48 Identities=44% Similarity=0.632 Sum_probs=41.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|.||+|++.+|+.|.... ...+++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 346899999999999999877 345789999999999999999997754
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-08 Score=98.38 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------------------cE
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 268 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----------------------~~ 268 (487)
+....++|...+... +.++.+||+||.|+||+++|+++|+.+-. .+
T Consensus 8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 456677777666432 45678999999999999999999997722 12
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.+.... .++. -.-..++.+.+.+.. ....|++||++|.+.. ...|.|++.++. .+.
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLEE---PAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhcC---CCC
Confidence 2232211 0000 122344554443322 2346999999999853 345668888873 444
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
.+++|..|+.++.+-+.+++|+.. +.++.|+.++..+.+...
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRCq~-~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRCQQ-WVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CeEEEEEECChhhChHHHHhccee-EeCCCCCHHHHHHHHHHc
Confidence 577788888899999999999965 899999998888877653
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=103.03 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----CCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----GDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~----g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
...+++|+|+||||||+||.++++++ +.+++.++..++...+. +........+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34679999999999999999999987 78888988877665432 111111222333322 3469999999542
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHHHhhc---cccccCCCCCH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRL---EKRILVPLPDT 377 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL~rRf---~~~i~~~~Pd~ 377 (487)
.. .. .....|...++....... .+|.|||.+ .. ++.++.+|+ ...+.+..||.
T Consensus 191 ~~--------t~---~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 RD--------TE---WAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CC--------CH---HHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 11 11 122334445543322222 256678766 33 466788885 23355555654
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=102.18 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=90.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecccch---------------
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 277 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~-------------------------~i~v~~~~l~--------------- 277 (487)
+.++++||+||+|+||+++|+++|+.+... ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456789999999999999999999987432 1122111000
Q ss_pred ---hh----c-cCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCc
Q 011400 278 ---SK----W-RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345 (487)
Q Consensus 278 ---~~----~-~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 345 (487)
++ . ..-.-..++.+...+.. ....|++||++|.|.. ...|.||..++ ..+..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc---CCCcC
Confidence 00 0 00122345555444332 2235999999999853 24566888888 34455
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+++|.+|++++.|.+.+++|+. .+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHHc
Confidence 7788899999999999999995 5999999999998888764
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=99.94 Aligned_cols=165 Identities=19% Similarity=0.157 Sum_probs=109.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------EE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------FF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------~i 269 (487)
.+.+.+++-.++|+++.+++...+.++...+. . .++|+|||||||||+...+.|..+-.+ +.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------L-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCCC-----------C-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 45566777789999999999999998854431 1 289999999999999999999988553 12
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHh-------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~-------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
.+++++-.+ .+ ..+.-...|..++. ..+..+++||+|.+..+.+ ++|-..++...
T Consensus 98 elnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------------nALRRviek~t-- 159 (360)
T KOG0990|consen 98 ELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------------NALRRVIEKYT-- 159 (360)
T ss_pred HhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-------------HHHHHHHHHhc--
Confidence 223332211 11 12222334555543 2567999999999975532 22333333222
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 343 ~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
..+.+...+|.|..+.+++++||.+ +.+.+-+...-...+.+++....
T Consensus 160 -~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 160 -ANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred -cceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcch
Confidence 2344557799999999999999977 66665566666666677765443
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=96.95 Aligned_cols=236 Identities=18% Similarity=0.217 Sum_probs=148.8
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccchhh-
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSVVSK- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~~~l~~~- 279 (487)
-..+.|.+..++.+++++..++.. ..+.++.+.|-||||||.+...+..... ...++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 356899999999999999887653 3456799999999999999997766552 24578888764321
Q ss_pred ---------c----c-CCcHHHHHHHHHH-HHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 280 ---------W----R-GDSEKLIKVLFEL-ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 280 ---------~----~-g~se~~l~~~f~~-a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
+ . +.+.......|.. .... .+-++++||+|.|....+. + |+..++.-.-..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------v---Ly~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------V---LYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------e---eeeehhcccCCc
Confidence 1 1 1122222333332 2222 3679999999999854322 1 223333233445
Q ss_pred CcEEEEEEeCCCCcccHHHHh---hc---cccccCCCCCHHHHHHHHHHhCCCCCCCCCC--CHHHHHHHhcCCcHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESL--PYDLLVERTEGYSGSDIR 415 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~r---Rf---~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~--~l~~la~~t~G~sg~dI~ 415 (487)
.++++|+.+|..+.-|..|-+ |. ...+.|++|+.++..+|+...+......... .++-.|++..|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 567888999988776655544 22 4568899999999999999999876655433 36668888898887 666
Q ss_pred HHHHHHHhHHHHHHHHHhhchhcc------CCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 416 LVSKEAAMQPLRRLMVLLEGRQEV------APDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 416 ~L~~~A~~~a~rr~~~~le~~~~~------~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
.+..- .|++++..|..... .+.+.......|-.+++..++.++--+.+
T Consensus 367 kaLdv-----~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDV-----CRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHH-----HHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 53321 22233322221111 11111111245678899998888865544
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=104.15 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=104.7
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---------- 273 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~---------- 273 (487)
..|.-++|++..|..|.-..+.| .-.|+||.|+.|||||+++|+|+.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 44889999999999887665443 23689999999999999999999977211111111
Q ss_pred ---cc-------------------chhhccCCcHHHH------HHHHH----------HHHhcCCcEEEechhhhHHhhh
Q 011400 274 ---SS-------------------VVSKWRGDSEKLI------KVLFE----------LARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 274 ---~~-------------------l~~~~~g~se~~l------~~~f~----------~a~~~~p~IL~IDEiD~L~~~r 315 (487)
.. +...-.|.++..+ ....+ .++.+. +||+|||+..|.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL~--- 157 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLLD--- 157 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEecccccc---
Confidence 00 1111112333311 11111 122233 699999998774
Q ss_pred cccchhhHHHHHHHHHHHHHhcC---------Cc-CCCCcEEEEEEeCCC-CcccHHHHhhccccccCCCC-CHHHHHHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAM 383 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~VlVIatTn~p-~~Ld~aL~rRf~~~i~~~~P-d~eeR~~I 383 (487)
..+++.||+.+.. ++ ..+..+++|+|+|.- ..|-+.|++||...+.+..| +.++|.+|
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 2345556655542 21 123457788888876 46999999999999998776 88999999
Q ss_pred HHHhCCC
Q 011400 384 FESLLPS 390 (487)
Q Consensus 384 L~~~l~~ 390 (487)
+++.+.-
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9987754
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.6e-09 Score=101.41 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCCCCCccc----CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 201 SPDVKWESIK----GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 201 ~~~~~~~di~----G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
....+|+... |...+...+..++.... ....+++|+||||||||+||.+||+++ +..++.++.
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 3445677764 33334444444433221 123689999999999999999999988 677888888
Q ss_pred ccchhhccCCcH--HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 274 SSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 274 ~~l~~~~~g~se--~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
.++......... .....++... ....+|+|||+...... .....+ |...++.-..... .+|.|
T Consensus 138 ~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s--------~~~~~~---l~~ii~~R~~~~~--ptiit 202 (248)
T PRK12377 138 PDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET--------KNEQVV---LNQIIDRRTASMR--SVGML 202 (248)
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC--------HHHHHH---HHHHHHHHHhcCC--CEEEE
Confidence 777654321100 0111223322 34579999999654211 112233 4444442222222 24568
Q ss_pred eCCCC-----cccHHHHhhc
Q 011400 352 TNLPW-----ELDAAMLRRL 366 (487)
Q Consensus 352 Tn~p~-----~Ld~aL~rRf 366 (487)
||... .+..++.+|+
T Consensus 203 SNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 203 TNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred cCCCHHHHHHHhhHHHHHHH
Confidence 98762 2555666766
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=100.77 Aligned_cols=210 Identities=22% Similarity=0.250 Sum_probs=124.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
.++|.....+.+.+.+.... .....++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH---
Confidence 46666555555444432211 233569999999999999999999876 57999999987633211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 285 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 285 e~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
-..+|.. ......++|||||+|.|... ....|+..++.-. .
T Consensus 202 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~ 265 (444)
T PRK15115 202 ---ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRD 265 (444)
T ss_pred ---HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCce
Confidence 1112211 11123479999999998644 2333555554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
....+.+|++|+.+- .+.+.+..|+.. +.+..|...+|.+-+ +.++...... ......+++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~-~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~ 337 (444)
T PRK15115 266 IDIDVRIISATHRDLPKAMARGEFREDLYYRLNV-VSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFS 337 (444)
T ss_pred eeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhce-eeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcC
Confidence 112467788887541 233445555533 677788888886433 3333221000 001123688
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
...+..|.+..|.++++++.+.++....... ...|+.+|+...+
T Consensus 338 ~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~------~~~i~~~~l~~~~ 381 (444)
T PRK15115 338 TDAMKRLMTASWPGNVRQLVNVIEQCVALTS------SPVISDALVEQAL 381 (444)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCC------CCccChhhhhhhh
Confidence 8899999999999999998887776543221 1236666665444
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=107.93 Aligned_cols=213 Identities=21% Similarity=0.199 Sum_probs=132.7
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 281 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~ 281 (487)
.+.+++|.....+.+.+.+.... .....|+|.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 46788998877777776663321 234579999999999999999999976 4789999998873221
Q ss_pred CCcHHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 282 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 282 g~se~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
.-..+|.. ......+.|||||+|.|... ....|+..++.-.
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCC
Confidence 11111111 01123479999999988643 2334556555321
Q ss_pred --CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
.....+.+|+||+.. ..+.+.|..|+.. +.+..|...+|.+ ++.+++...... ......
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~ 338 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAK 338 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCC
Confidence 111235678788754 2356778888843 5666666666654 444444221110 001134
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
++++..+..|.+..|.++++++.+.++....... ...|+.+|+-..+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~------~~~i~~~~l~~~~ 385 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA------GQEVLIQDLPGEL 385 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC------CCcccHHHCcHhh
Confidence 6888899999999999999998887776543222 1236666764433
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=106.31 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=122.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 281 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~ 281 (487)
.+.+++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888877777776553321 234579999999999999999998876 46899999988732211
Q ss_pred CCcHHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 282 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 282 g~se~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
-..+|.. ......++|||||++.|... +...|+..++.-.
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGG 267 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCC
Confidence 0111110 11123479999999998643 3334555554221
Q ss_pred --CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hc
Q 011400 341 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~ 407 (487)
.....+.+|++|+.. ..+.+.|..|+.. +.+.+|...+|.+-+..+.... +..++.. ..
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~~~~-------l~~~~~~~~~~~~ 339 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLANAF-------LERFARELKRKTK 339 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHHHHH-------HHHHHHHhCCCCC
Confidence 111246677788765 2355667777743 7777888888876333222110 1112221 24
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+++...+..|.+..|.++++++.+.++...
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 578888888888888888888877776544
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-08 Score=93.29 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=120.4
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-C--CcEE-----
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTFF----- 269 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~--~~~i----- 269 (487)
...+.+.+++.+.+.++....|+.... . ..-.++++|||+|+||-|.+-++.+++ | .+=.
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~-~-----------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSS-T-----------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcc-c-----------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 344566678889999999998887663 1 112479999999999999999999988 2 1111
Q ss_pred ----------E---Eecc---cchhhccCCc-HHHHHHHHHHHHhcC---------CcEEEechhhhHHhhhcccchhhH
Q 011400 270 ----------N---ISAS---SVVSKWRGDS-EKLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSEHE 323 (487)
Q Consensus 270 ----------~---v~~~---~l~~~~~g~s-e~~l~~~f~~a~~~~---------p~IL~IDEiD~L~~~r~~~~~~~~ 323 (487)
+ ++.. ++.....|.. .-.++.+++...+.+ ..+++|.|+|.|..+.
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-------- 143 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-------- 143 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH--------
Confidence 1 1100 0011112222 234555555544332 3499999999986542
Q ss_pred HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHH
Q 011400 324 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLL 402 (487)
Q Consensus 324 ~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~l 402 (487)
+..|-..|+... ..+.+|..+|....+-+++++|+ ..+.++.|+.++-..++...+.+.+.....+ +..+
T Consensus 144 -----Q~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 144 -----QHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred -----HHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 223445555332 23557778999999999999999 4499999999999999999998777664432 4556
Q ss_pred HHHhcCC
Q 011400 403 VERTEGY 409 (487)
Q Consensus 403 a~~t~G~ 409 (487)
|+.+.|-
T Consensus 215 a~kS~~n 221 (351)
T KOG2035|consen 215 AEKSNRN 221 (351)
T ss_pred HHHhccc
Confidence 6655553
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=101.96 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
...+++|+||||||||+||.++++++ |..+++++..++....... ........+... ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 34689999999999999999999866 7788888888776654211 111122233332 34579999999876432
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc----------ccHHHHhhcc---ccccCCCCCHHHHH
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARR 381 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~----------Ld~aL~rRf~---~~i~~~~Pd~eeR~ 381 (487)
. ..... |...++..... . -+|.|||.+.. +..++++|+- ..+.+.-++...+.
T Consensus 183 ~--------~~~~~---Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~ 248 (269)
T PRK08181 183 Q--------AETSV---LFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT 248 (269)
T ss_pred H--------HHHHH---HHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence 1 11222 33333322222 2 25668887621 3356777763 33555655654444
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-08 Score=103.82 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=120.5
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 280 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~- 280 (487)
.+..++|.......+.+.+.... .....++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 35567887766666655543322 234579999999999999999998865 5789999998774321
Q ss_pred ----cCCcHH-------HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 281 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 281 ----~g~se~-------~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
.|.... .....+.. ...++|||||+|.|... +...|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 110000 00011111 22479999999998643 2344555554321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~G~s 410 (487)
....+.||++|+... .+.+.+..|+.. +.+..|...+|.+-+..+.... +..++.. ..+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~-------l~~~~~~~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHF-------LQKFSSENQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHH-------HHHHHHHcCCCCCCcC
Confidence 112367888887652 355667777744 7778888887765333221110 1222221 24677
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
...+..|.+.-|.++++++.+.++...
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 788888888888888887777666543
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=91.88 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=57.3
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-------------CCcccHHHHhhc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRRL 366 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-------------p~~Ld~aL~rRf 366 (487)
|+||||||++.|- -..+..|-..++ ..-.++ ||.+||+ |..+++.+++|.
T Consensus 297 PGVLFIDEVhMLD-------------iEcFTyL~kalE---S~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-------------IECFTYLHKALE---SPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred CcceEeeehhhhh-------------hHHHHHHHHHhc---CCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 8899999997762 234444555554 222334 5566664 345889999999
Q ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHH
Q 011400 367 EKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVER 405 (487)
Q Consensus 367 ~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~ 405 (487)
.+|..-+++.++-++|++..........+. .++.++..
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 557777788888899999887665554332 24444443
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-08 Score=103.27 Aligned_cols=100 Identities=27% Similarity=0.484 Sum_probs=73.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCCc-HHHHHHHHHHHH----hcCCcEEEechhhhHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~s-e~~l~~~f~~a~----~~~p~IL~IDEiD~L~~ 313 (487)
..+|||.||+|+|||+||+.+|+-++.||...+|..+.. .|+|+- +..+..++..|. ..+-+|+||||+|+|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 367999999999999999999999999999999999875 688864 445555554442 22347999999999985
Q ss_pred hhcccc-hhhHHHHHHHHHHHHHhcCC
Q 011400 314 QRGEAR-SEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 314 ~r~~~~-~~~~~~~~i~~~Ll~~ld~~ 339 (487)
....-. .-.-...-+...||..++|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 432111 11112345677788888864
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.2e-08 Score=94.28 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=68.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc---HHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s---e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
.+++|+|+||||||+|+.+||+++ +..++.++..++........ ......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999988 77888888888765433211 111223343333 457999999976531
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhc
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRL 366 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf 366 (487)
......++..+++.- .... ..+|.|||... .++..+.+|+
T Consensus 177 -------s~~~~~~l~~Ii~~R---y~~~--~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 177 -------SRYEKVIINQIVDRR---SSSK--RPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -------CHHHHHHHHHHHHHH---HhCC--CCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 122233444444332 1111 22566888762 2455666666
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=110.86 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=97.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhc---------CCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEE
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 270 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~---------~~~~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~ 270 (487)
..|.|.+.+|+.|.-.+........-.. ..++...+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 5689999999988766644321110000 1134455899999999999999999998653 23333
Q ss_pred EecccchhhccCC--cHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011400 271 ISASSVVSKWRGD--SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 340 (487)
Q Consensus 271 v~~~~l~~~~~g~--se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------- 340 (487)
+.+..... +.+. .+..++ ..+.. ...++++|||+|.+... ....|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 33322211 0000 000000 00111 12379999999988533 2234556664211
Q ss_pred ---CCCCcEEEEEEeCCCC-------------cccHHHHhhccccc-cCCCCCHHHHHHHHHHhC
Q 011400 341 ---QSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLL 388 (487)
Q Consensus 341 ---~~~~~VlVIatTn~p~-------------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~l 388 (487)
.-+....|||++|..+ .+++++++||+.++ .++.|+.+.-..|.++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 1224578899998742 27899999998764 457788777666655544
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-08 Score=99.81 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=68.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC---cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~---se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+++|+||+|||||+|+.++|+++ +..+++++..++....... ........+... ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999987 7788899888876543211 001111112222 2347999999966532
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHHHhhcc
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 367 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL~rRf~ 367 (487)
. .. ....|...++........ +|.|||.+ .. +++++.+|+.
T Consensus 261 t--------~~---~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 T--------EF---SKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred C--------HH---HHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 11 122344444432222222 45577765 32 4567778773
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=100.64 Aligned_cols=218 Identities=19% Similarity=0.187 Sum_probs=128.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc-
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 281 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~- 281 (487)
+..++|.....+.+.+.+.... .....+++.|.+||||+++|+++.... +.+|+.++|..+...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4568888777777666553321 234579999999999999999998875 57899999987743211
Q ss_pred ----CCcH----HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCc
Q 011400 282 ----GDSE----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 345 (487)
Q Consensus 282 ----g~se----~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 345 (487)
|... ..............+++|||||++.|... +...|+..++.-. .....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeee
Confidence 1000 00000000011223579999999988543 2334555554221 11123
Q ss_pred EEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 346 VFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 346 VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
+.||++|+..- .+.+.|..|+.. +.+.+|...+|.+ ++.+++...... ......+++...+
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a~ 341 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKLLDPEAL 341 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCCcCHHHH
Confidence 56777876542 355677777743 5566666555543 444443221100 0011246888999
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 415 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 415 ~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
..|.+.-|.++++++.+.++........ ..|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~~~------~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMASG------DEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHhchHHH
Confidence 9999999999999888877765433221 236777765544
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=99.44 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+++|+||||||||+||.+++.++ |..++.++..++....... ....+...+.. ...+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 345689999999999999999999876 6666666666655433211 00111222222 2346799999998764
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.9e-07 Score=88.26 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=62.6
Q ss_pred CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 355 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 355 p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
|..++-.+++|+ .+|...+++.++-++||+..+.......+.+ ++.|......-+-+.--.|+..|...+.+|..
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~--- 414 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG--- 414 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC---
Confidence 456899999999 5578888899999999999987765544333 44444444444444444566667777666521
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+..+|++.+.+-+-
T Consensus 415 ---------------~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 ---------------KVVEVDDIERVYRLFL 430 (454)
T ss_pred ---------------ceeehhHHHHHHHHHh
Confidence 3478889999887654
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-08 Score=88.87 Aligned_cols=107 Identities=26% Similarity=0.400 Sum_probs=65.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
....|+|+|++||||+++|++|....+ .+++.++|..+. ..+++.+ .+++|||+|+|.+...
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~- 84 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE- 84 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH-
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH-
Confidence 345799999999999999999999775 356666666542 2344443 5589999999998643
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-C------cccHHHHhhccccccCCCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~------~Ld~aL~rRf~~~i~~~~P 375 (487)
....|+..++... ...+.+|+++..+ . .+++.|..|+.. +.+..|
T Consensus 85 ------------~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 85 ------------AQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp ------------HHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCST-CEEEE-
T ss_pred ------------HHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCC-CEEeCC
Confidence 2233555554322 2223455555443 3 266777777754 344444
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=102.83 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34667799999999999999887743 24799999999999999999999774
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-08 Score=95.29 Aligned_cols=181 Identities=21% Similarity=0.270 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEec-ccch--------
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA-SSVV-------- 277 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~-~~l~-------- 277 (487)
+|.+...+.|.+.+.. .+...++|+||+|+|||+|++.+.+..... .+++.. ....
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5667777777776533 234679999999999999999999988321 111111 0000
Q ss_pred -------------h-hc------------cCCcHHHHHHHHHHHHhc-CCcEEEechhhhHH-hhhcccchhhHHHHHHH
Q 011400 278 -------------S-KW------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 329 (487)
Q Consensus 278 -------------~-~~------------~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~-~~r~~~~~~~~~~~~i~ 329 (487)
. .. .......+..+++..... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 0 00 011234455556555543 23799999999997 2110 12344
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCC--CCCCCHHHH
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLL 402 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~--~~~~~l~~l 402 (487)
..|...++.........+|++++.... .-...+..|+.. +.+++-+.++..++++..+..... ..+.+++.+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i 220 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 455555554333444444444444211 112234557766 899999999999999997655411 134456777
Q ss_pred HHHhcCCcH
Q 011400 403 VERTEGYSG 411 (487)
Q Consensus 403 a~~t~G~sg 411 (487)
...+.|+.+
T Consensus 221 ~~~~gG~P~ 229 (234)
T PF01637_consen 221 YSLTGGNPR 229 (234)
T ss_dssp HHHHTT-HH
T ss_pred HHHhCCCHH
Confidence 888887654
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=95.48 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=88.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---hhhc-cCCcHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 288 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~-------------------------~~i~v~~~~l---~~~~-~g~se~~l 288 (487)
+.++.+||+||+|+|||++|+.+|+.+.. .++.++...- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45678999999999999999999998732 2334433110 0000 00123456
Q ss_pred HHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh
Q 011400 289 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 364 (487)
Q Consensus 289 ~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r 364 (487)
+.+.+.+.. ....|++||+++.+... ..+.++..++... .. +.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--~~-~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--PQ-VVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc--CC-CEEEEEeCChHhChHHHHH
Confidence 666655543 23359999999988432 3445777777543 22 4466688888899999999
Q ss_pred hccccccCCCCCHHHHHHHHHH
Q 011400 365 RLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 365 Rf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
|+.. +.|++|+.++....|..
T Consensus 163 Rc~~-~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCRK-MVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhhh-hcCCCCCHHHHHHHHHh
Confidence 9954 88999999888877764
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-07 Score=95.05 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=125.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
.++|.......+...+... ......++++|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~--- 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL--- 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhc----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH---
Confidence 4666666666555544321 1334679999999999999999998765 57899999987642211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 285 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 285 e~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
-..+|.. .....+++||||||+.|... ....|+..++.-. .
T Consensus 207 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 207 ---ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred ---HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCce
Confidence 0111110 11223579999999998644 2233555554321 0
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~G~s 410 (487)
....+.+|++|+.+. .+.+.|..|+.. +.+..|...+|.+-+..+.... +..++.. ..+++
T Consensus 271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~~~~-------l~~~~~~~~~~~~~~~ 342 (441)
T PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLAGHF-------LQRFAERNRKAVKGFT 342 (441)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHHHHH-------HHHHHHHhCCCCCCcC
Confidence 111355677776542 244555556643 6777787777765333322111 1222221 24588
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
...+..|.+..|.++++++.+.++....... ...|+.+|+...+
T Consensus 343 ~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~------~~~i~~~~l~~~~ 386 (441)
T PRK10365 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLT------GEYISERELPLAI 386 (441)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC------CCccchHhCchhh
Confidence 8999999999999999998887776443221 1236666665443
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-08 Score=92.95 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=47.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc-HHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
....+++|+||||||||+||.++++++ |.++..++..++........ .......+.... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 345789999999999999999999977 88888999888876543210 111222333333 347999999954
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=82.78 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=47.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
+.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 78888887766432111111 222222222225689999999887
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=96.45 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=55.0
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..|...+.+.+.+||+-...-.++++.++...... ..+.+-+||+||||||||++++.+|++++..+.+..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 34566777888899999988888888888643321 123346889999999999999999999998887753
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=91.30 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=50.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHH-HHH-HHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LIK-VLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~-~l~-~~f~~a~~~~p~IL~IDEiD~L 311 (487)
...+++|+||||||||+||-||++++ |.+++.++.++++......... ... .+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 45789999999999999999999988 7889999988887654321111 111 111112 23469999999654
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-07 Score=100.96 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=93.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------ 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~------ 277 (487)
+.|+|++++...+-+++..... .+... .|.-.+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~--gl~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA--GLKDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc--ccCCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4689999999999998855432 11111 467789999999999999999999988 4568999888632
Q ss_pred ---hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------CCCcE
Q 011400 278 ---SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 346 (487)
Q Consensus 278 ---~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~V 346 (487)
..|+|..+. ..+.+..+....+||+|||||.-. ..+++.|++.+|.-.- .-+++
T Consensus 638 gsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh-------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAH-------------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCCcccccchhH--HHHHHHHhcCCceEEEEechhhcC-------------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 235555443 366777788888999999998753 3456667777774321 12458
Q ss_pred EEEEEeCC
Q 011400 347 FVLAATNL 354 (487)
Q Consensus 347 lVIatTn~ 354 (487)
+||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 88899875
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-07 Score=90.63 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=45.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
..+++|+||||||||+|+.+||+++ +..+++++..++........ ......+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56777887766544321111 111112222 23457999999944
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=92.86 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+++|+||||||||+|+.+++.+. |..+..+++.++...+... ....+...+... ...+.+++|||++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345689999999999999999998764 6777777777665433211 111233334332 2456799999997653
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=94.28 Aligned_cols=205 Identities=22% Similarity=0.240 Sum_probs=125.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
......|+.+++.....+.+.+..... ..-...+||.|.+||||-.+|++..... ..+|+.++|..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 345566888998887777666544211 1122359999999999999999988766 689999999877
Q ss_pred hhhc-----cCCc--HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC-------
Q 011400 277 VSKW-----RGDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS------- 342 (487)
Q Consensus 277 ~~~~-----~g~s--e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~------- 342 (487)
-... .|.. .+....+|+.|.. +.+|+|||-.+.+ ++...|+..+.+-+-+
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp-------------~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP-------------RLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH-------------HHHHHHHHHhcCCceeecCCcce
Confidence 5431 1211 1233456776665 7999999976654 3445577776532211
Q ss_pred -CCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 343 -DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 343 -~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
.-.|.||++|..+- ..-+.+.-|.. ++.+..|...+|..-+ +.++.... +++..-...++
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s-------~elg~p~pkl~ 402 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFS-------DELGVPRPKLA 402 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHH-------HHhCCCCCccC
Confidence 12488999997652 23334444763 3677777666655322 22211100 01111122355
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
..-+..|.+..|.+++|++.+.+.+...
T Consensus 403 ~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 403 ADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 5666777888888888888777665544
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=78.16 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccchhh--------------ccC--CcHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WRG--DSEKLIKVLFELA 295 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--------~~~~i~v~~~~l~~~--------------~~g--~se~~l~~~f~~a 295 (487)
.+.++++||||+|||++++.+++.+ ..+++.+++...... ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999987 677888876544310 001 2233444455555
Q ss_pred HhcCCcEEEechhhhHH
Q 011400 296 RHHAPSTIFLDEIDAII 312 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~ 312 (487)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55554599999999974
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=97.60 Aligned_cols=171 Identities=19% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----ccchhhcc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSKWR 281 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~----~~l~~~~~ 281 (487)
+..|.|.+.+|.-|.-.+..-.....--...++..-+|++.|.||||||-+.++.+.-+...+|.--- +.|....+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 67899999999988766543322111111114556789999999999999999999977655443211 11111111
Q ss_pred CCcHHHHHHHHHHHHh---cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC----Cc------CCCCcEEE
Q 011400 282 GDSEKLIKVLFELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----LT------QSDELVFV 348 (487)
Q Consensus 282 g~se~~l~~~f~~a~~---~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----~~------~~~~~VlV 348 (487)
...+. -...+ +|-. ...+|-.|||+|++..+.+ ..+.+.|+. +. .-+.+.-|
T Consensus 424 kD~es-gdf~i-EAGALmLADnGICCIDEFDKMd~~dq-------------vAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 424 KDEES-GDFTI-EAGALMLADNGICCIDEFDKMDVKDQ-------------VAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred ecCCC-Cceee-ecCcEEEccCceEEechhcccChHhH-------------HHHHHHHHhheehheecceEEeecchhhh
Confidence 00000 00001 1110 1237999999999854311 123444431 11 11223447
Q ss_pred EEEeCCCC-------------cccHHHHhhcccc-ccCCCCCHHHHHHHHHHhCCCC
Q 011400 349 LAATNLPW-------------ELDAAMLRRLEKR-ILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 349 IatTn~p~-------------~Ld~aL~rRf~~~-i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
+|++|+.. .+++++++||+.. |.++.|++..-..|-++.+..+
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 78888763 2788999999865 4668898888888877776543
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=96.40 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=83.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchhhccCCc--HHHHH--------HHHHHHHhcCCcEEEechh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~~~~g~s--e~~l~--------~~f~~a~~~~p~IL~IDEi 308 (487)
.||+|.|++|||||+++++++.-+. .+|..+..+.-....+|.. +..++ .++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 6899999999999999999999875 5888777655444445432 11111 1122211 269999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~P 375 (487)
..+. ..+++.|++.|+.-. ..+...++|++-|.. ..+++++++||+..+.++.|
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 7764 446677888886321 112346677763322 34899999999999999988
Q ss_pred CHHH
Q 011400 376 DTEA 379 (487)
Q Consensus 376 d~ee 379 (487)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=93.97 Aligned_cols=176 Identities=23% Similarity=0.243 Sum_probs=91.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-cccchh--hcc--
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS--KWR-- 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~-~~~l~~--~~~-- 281 (487)
..|.|+|++|+-|.-.+..-.....-.....+..-+|||+|.||||||.+.+.+++-+..-.+.-- ++.-.+ .|+
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 457899999998876554332211111111334468999999999999999999997744333211 111000 000
Q ss_pred -CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cCCCCcEEEEEEeCCCC---
Q 011400 282 -GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPW--- 356 (487)
Q Consensus 282 -g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~VlVIatTn~p~--- 356 (487)
+++.+.+.+- ...-....+|-+|||||++.....+...+-+..+. +--.-.|+ ..-+.+.-|+|++|...
T Consensus 509 d~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQT----vSIAKAGII~sLNAR~SVLAaANP~~sky 583 (804)
T KOG0478|consen 509 DPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQT----LSIAKAGIIASLNARCSVLAAANPIRSKY 583 (804)
T ss_pred cCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhh----hhHhhcceeeeccccceeeeeeccccccC
Confidence 0111111000 00001123699999999995332211111111100 00011122 22234455888888542
Q ss_pred ----------cccHHHHhhccccc-cCCCCCHHHHHHHHHHh
Q 011400 357 ----------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 387 (487)
Q Consensus 357 ----------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~ 387 (487)
.|++.|++||+.++ .+..||+..-+.|..++
T Consensus 584 np~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 584 NPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred CCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 28899999999865 44667776445554444
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=91.00 Aligned_cols=247 Identities=20% Similarity=0.189 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
.+|.|++++|+.|.-++....... ...+ ++..-+|+|.|.||+.||-|.+.+.+-.....|..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 468999999999987775433211 1111 45556799999999999999999998765555443211 1122323
Q ss_pred HHHHHHHH-HHHH-------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH-hcCC-cCCCCcEEEEEEeCC
Q 011400 285 EKLIKVLF-ELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ-MDGL-TQSDELVFVLAATNL 354 (487)
Q Consensus 285 e~~l~~~f-~~a~-------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~-ld~~-~~~~~~VlVIatTn~ 354 (487)
...++.-. .+.. -...+|-+|||+|++...... .-++...+ +-+.. =.|+ +.-+.+..|++++|.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt--AIHEVMEQ---QTISIaKAGI~TtLNAR~sILaAANP 491 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT--AIHEVMEQ---QTISIAKAGINTTLNARTSILAAANP 491 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH--HHHHHHHh---hhhhhhhhccccchhhhHHhhhhcCc
Confidence 22222100 0000 011368999999999643211 11111111 00110 0122 122344567888886
Q ss_pred CC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCCC--CCCCCC-----CCHH------HHHHHhc
Q 011400 355 PW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPS--QTGEES-----LPYD------LLVERTE 407 (487)
Q Consensus 355 p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~~--~~~~~~-----~~l~------~la~~t~ 407 (487)
.+ .|+.||++||+..+.+ ..||.+.-..+.++..-- +..++. .+.+ .+++...
T Consensus 492 ayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~ 571 (721)
T KOG0482|consen 492 AYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKN 571 (721)
T ss_pred cccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcC
Confidence 64 2899999999976654 668877777777665421 111111 2322 2455556
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHH--------------HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMV--------------LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~--------------~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
-+.+.++...+..|-...-+.... .+.-...... +--...|..+|+.+||+-++-|
T Consensus 572 P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~Alar---LRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 572 PVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALAR---LRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHH---hhhccccchhhHHHHHHHHHhh
Confidence 677777777776665544333221 1100000000 0001237889999999887644
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-06 Score=76.18 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=74.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC--------c-EEEEecccchhhc------------cCCcHHHHHH-HHHHHHhcC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT--------T-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA 299 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~--------~-~i~v~~~~l~~~~------------~g~se~~l~~-~f~~a~~~~ 299 (487)
-++|+|+||+|||++++.++..+.. . ++.+.+.+....- .......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4889999999999999999987711 1 2233333222110 0011111111 122233455
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcc--ccccCCCCCH
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 377 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~--~~i~~~~Pd~ 377 (487)
..+|+||.+|.+...... .........+...+...... .+-++.|++ +..... +.+++. ..+.+..-+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~--~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPP--GVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCC--CCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999999753221 11122222333333321112 233343443 222222 444333 3477788899
Q ss_pred HHHHHHHHHhCCC
Q 011400 378 EARRAMFESLLPS 390 (487)
Q Consensus 378 eeR~~IL~~~l~~ 390 (487)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-07 Score=90.16 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=49.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
..+|++|+||+|||||+|+.++|+++ |.++..++.+++......... ..+...++... ...+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 45799999999999999999999998 777888887776554321110 11223333322 3479999999643
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-05 Score=78.40 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE--EEec--------------cc
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS 275 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i--~v~~--------------~~ 275 (487)
+..+++.|...+... +.++.+||+|| +||+++|+.+|..+-..-- .-.| ++
T Consensus 7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345566666665432 45678999996 6899999999997622100 0000 11
Q ss_pred chhhc-cC--CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 276 VVSKW-RG--DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 276 l~~~~-~g--~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
+.--. .| -.-..++.+...+.. ....|++||++|.+... ..|.||..++. ++..+++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE---Pp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIEE---PQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcC---CCCCeEE
Confidence 10000 01 123445555444432 22359999999998532 34668888873 3444667
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
|.+|+.++.+-+.+++|+.. +.|+. +.++..+++... +.. .+...++....| ++.....+..
T Consensus 138 iL~t~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L~~~----g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRTQI-FHFPK-NEAYLIQLLEQK----GLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHccee-eeCCC-cHHHHHHHHHHc----CCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 77888899999999999955 77765 555555555432 221 122344445555 4555555543
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-06 Score=82.53 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=77.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEecccchhhccCCcHHHHHHHHHHHHh----
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELARH---- 297 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~---- 297 (487)
..++.+||+||+|+||+.+|.++|+.+-+. ++.+.... .+. .-.-..++.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999987331 11121100 000 0123344555444432
Q ss_pred cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 298 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
....|++||++|.+... ..+.|+..++. ++..+++|..|+.++.+.+.+++|+.. +.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LEE---Pp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-------------AISAFLKVLED---PPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhhc---CCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence 22359999999998533 34668888873 445567777888899999999999955 666543
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-06 Score=94.33 Aligned_cols=167 Identities=24% Similarity=0.266 Sum_probs=94.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcC--CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecc---cchhh
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SAS---SVVSK 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~--~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v-~~~---~l~~~ 279 (487)
...|.|++.+|+.|.-.+..... ..... .++..-+|||.|.||||||.|.+.+++-+...++.- .++ .|...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 46789999999988866543322 11111 134456899999999999999999999775544322 111 11111
Q ss_pred ccCCcHHHHHHHHHHHH---hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC----CcC------CCCcE
Q 011400 280 WRGDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----LTQ------SDELV 346 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~---~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~V 346 (487)
.+-... ...+.-.+- ...++|.+|||+|.+.... ...+...|+. +.+ -+.+.
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------r~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------RVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------HHHHHHHHHhcEeeecccceeeecchhh
Confidence 000000 000000110 1234799999999874321 1223444431 111 11334
Q ss_pred EEEEEeCCCC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCC
Q 011400 347 FVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLP 389 (487)
Q Consensus 347 lVIatTn~p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~ 389 (487)
-|+|++|... .+++++++||+..+.+ ..|+.+.-..+.++.+.
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 5778888774 2788999999987655 45766655555555543
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=86.92 Aligned_cols=137 Identities=22% Similarity=0.327 Sum_probs=75.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhhccCCcHHHHHHHHHHHH-----------hcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELAR-----------HHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~~~g~se~~l~~~f~~a~-----------~~~p~IL~ 304 (487)
..+++||.||+|||||++++..-+.+... ...++++... +...++.+++..- ..+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 45789999999999999999988776432 2233333221 2222332222110 11235999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhc--CCcCC-------CCcEEEEEEeCCCC---cccHHHHhhccccccC
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRILV 372 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--~~~~~-------~~~VlVIatTn~p~---~Ld~aL~rRf~~~i~~ 372 (487)
|||++.-..+.-+. ....+-|-+.++ |.-.. -..+.+|++++.+. .+++++.|.| .++.+
T Consensus 106 iDDlN~p~~d~ygt-------q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYGT-------QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE-
T ss_pred ecccCCCCCCCCCC-------cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEe
Confidence 99998765543221 122222222232 11111 13477788887543 4888898888 45899
Q ss_pred CCCCHHHHHHHHHHhCC
Q 011400 373 PLPDTEARRAMFESLLP 389 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~ 389 (487)
+.|+.+....|+..++.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888777664
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=78.26 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=74.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
.+-.++||+|||||..++.+|+.+|..++.++|++.. ....+.+++.-+.... +-+++||++.|...--
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~G-aW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQSG-AWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhcC-chhhhhhhhhhhHHHH----
Confidence 4678899999999999999999999999999998864 3456677776655544 7999999998853311
Q ss_pred hhHHHHHHHHHHHHHhcCCcC----------CCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 321 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~----------~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
+... +.+..+...+..-.. -....-++.|.|.. ..+++.++.-| +.+.+..||...-.+++
T Consensus 102 -S~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 102 -SVIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -HHHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred -HHHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 1111 111222222221110 01123345566643 46888888877 55888899976655544
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=72.66 Aligned_cols=72 Identities=25% Similarity=0.418 Sum_probs=48.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----------------------cC--CcHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------RG--DSEKLIKVLFELA 295 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----------------------~g--~se~~l~~~f~~a 295 (487)
++|+||||+|||+++..++... +.+++.++........ .. ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 4666666554332110 00 1111222334555
Q ss_pred HhcCCcEEEechhhhHHhh
Q 011400 296 RHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~~~ 314 (487)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677889999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=76.91 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=77.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------------ccchhhcc---CCcHHHHHHHHHHHHh---
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVSKWR---GDSEKLIKVLFELARH--- 297 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~--------------~~l~~~~~---g~se~~l~~~f~~a~~--- 297 (487)
.+++.+||+||+|+||..+|.++|+.+-..--.-.| +++.--+. .-....++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999977221000001 11100000 1122334444433221
Q ss_pred --cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 298 --HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 298 --~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
....|++|+++|.+.. ...+.||..++ .++..+++|..|+.++.+.+.+++|+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 2346999999999853 34566888887 3445577788899999999999999965 566555
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=73.96 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=83.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecccchhhccCCcHHHHHHHHHHHHh-----cCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT-------------TFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAP 300 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~-------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~-----~~p 300 (487)
-++.+||+|+.|.||+.+|+.+++.+-+ .++.++.. +. .-.-..++.+.+.... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCCc
Confidence 3467899999999999999999998721 12222200 00 0122344444444422 244
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR 380 (487)
.|++||++|.+.. ...+.|+..++. .+..+++|.+|+.+..+-+.+++|+.. +.+.+|+.++.
T Consensus 92 KvvII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHH
Confidence 6999999987742 234568888874 334455666777888899999999955 89999988887
Q ss_pred HHHHHH
Q 011400 381 RAMFES 386 (487)
Q Consensus 381 ~~IL~~ 386 (487)
...+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 766665
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.5e-05 Score=88.38 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=50.0
Q ss_pred HHHHHhhhhhc---CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 189 LAESLCRDIIR---GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 189 ~~~~~~~~~~~---~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+.+..++.. ..+...+++++|.+...++|.+.+.... ...+-+-|+|++|+||||||+++++.+.
T Consensus 163 ~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 163 MIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 34444444433 2355678999999999999998774321 2345688999999999999999998874
Q ss_pred Cc
Q 011400 266 TT 267 (487)
Q Consensus 266 ~~ 267 (487)
..
T Consensus 233 ~~ 234 (1153)
T PLN03210 233 RQ 234 (1153)
T ss_pred hc
Confidence 43
|
syringae 6; Provisional |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=88.24 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=115.4
Q ss_pred hhhcCCCCCCCCcccCc-HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------
Q 011400 196 DIIRGSPDVKWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 264 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~-e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------- 264 (487)
++......-+++.++|. ++-.+.+.+.+... ..++-+|.|.||+|||.++.-+|+..
T Consensus 175 dl~p~a~~gkldPvigr~deeirRvi~iL~Rr------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~ 242 (898)
T KOG1051|consen 175 DLTPRARQGKLDPVIGRHDEEIRRVIEILSRK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLK 242 (898)
T ss_pred ccChhhhccCCCCccCCchHHHHHHHHHHhcc------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccc
Confidence 33333333457888887 66666666666442 22678999999999999999999976
Q ss_pred CCcEEEEecccch--hhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC
Q 011400 265 KTTFFNISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 341 (487)
Q Consensus 265 ~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 341 (487)
+..++.++...+. .++.|+.+..++.+.+.+. .....||||||++-+.+.....+ .-...+.|-..+ .
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~nlLkp~L----~ 313 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAANLLKPLL----A 313 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHHhhHHHH----h
Confidence 3456777766544 3678899999999999888 44567999999999987643311 111222222111 2
Q ss_pred CCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 342 SDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 342 ~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.+. +.+|+||..- .+-+|++-+||+. +.++.|+.+.-..||......
T Consensus 314 rg~-l~~IGatT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 314 RGG-LWCIGATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cCC-eEEEecccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 333 6677766532 2358899999976 788999877766666665544
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.8e-06 Score=87.16 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=94.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc---------ch
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS---------VV 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~---------l~ 277 (487)
..|.|++.+|..+.-.+..-.....-....++...+|||.|.||||||-+.|.+++-....++..--.. ..
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 468999999999887764433222222222455568999999999999999999997766555432111 00
Q ss_pred hhccCCcHHHHHH-HHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHH---HHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 278 SKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL---KTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 278 ~~~~g~se~~l~~-~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i---~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
.... .++.+.. .+-.| ..+|.+|||+|++-......-.+.+..+.+ +..+...++ .+..||+|+|
T Consensus 529 dPvt--rEWTLEaGALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLq------ArctvIAAan 597 (854)
T KOG0477|consen 529 DPVT--REWTLEAGALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQ------ARCTVIAAAN 597 (854)
T ss_pred CCcc--ceeeeccCeEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHH------hhhhhheecC
Confidence 0000 0000000 00011 126999999999965422222222221111 111222222 2345788888
Q ss_pred CCC-------------cccHHHHhhccccccCCC---C--CHHHHHHHHHHhCCCCC
Q 011400 354 LPW-------------ELDAAMLRRLEKRILVPL---P--DTEARRAMFESLLPSQT 392 (487)
Q Consensus 354 ~p~-------------~Ld~aL~rRf~~~i~~~~---P--d~eeR~~IL~~~l~~~~ 392 (487)
... .+.+++++||+....+.- | |+....-++..+.+.++
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp 654 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHP 654 (854)
T ss_pred CCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCC
Confidence 631 367789999987555433 3 33333345555554443
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=77.33 Aligned_cols=157 Identities=19% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEecccch----------hh---c-----c-CCcHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W-----R-GDSEKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e--l~~~---~i~v~~~~l~----------~~---~-----~-g~se~~l~~~f~~ 294 (487)
..+-|.|+|++|+|||+||+.+++. .... ++.++...-. .. . . ...+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4567899999999999999999987 4332 2233322110 00 0 0 11223333333 3
Q ss_pred HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 295 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 295 a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
.-...+++|+||+++... ....+...+.. .....-||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLPS---FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------HC---HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------ccccccccccc---ccccccccccccccccc-cccccc-cccccccc
Confidence 333447999999997542 11112222211 11123355577654322 122211 35688888
Q ss_pred CCHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHhcCCcHHHHHHH
Q 011400 375 PDTEARRAMFESLLPSQTG----EESLPYDLLVERTEGYSGSDIRLV 417 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~~~~~----~~~~~l~~la~~t~G~sg~dI~~L 417 (487)
.+.++-.+++......... ........+++.+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 8999999999998755441 1122246688888764 3445443
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=80.66 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=101.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecccch------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV------ 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~---el~~~~i~v~~~~l~------ 277 (487)
-.+.|..+..+.+.+++...... ...+.|++.||.|+|||++...... +.|-.++.+......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45778888777887777544332 3457899999999999997765543 556677666543221
Q ss_pred ---------------hhccCCcHHHHHHHHHHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 278 ---------------SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 278 ---------------~~~~g~se~~l~~~f~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.+..|.....+..++...+. ..+.|.++||||.+++.. +++ .+.+.+|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQt--llYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQT--LLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhH--HHHHHHH
Confidence 11223334444444444332 123355568999887542 221 2455555
Q ss_pred CCcCCCCcEEEEEEeCCCCc---ccHHHHhhcccc-ccCCCC-CHHHHHHHHHHhC
Q 011400 338 GLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 388 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~~~-i~~~~P-d~eeR~~IL~~~l 388 (487)
-......++.||+.|.+.+. +...+.+||... |+++++ ...+-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 44455567888888877754 667888999766 555544 6788888888887
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-07 Score=93.56 Aligned_cols=168 Identities=25% Similarity=0.283 Sum_probs=84.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----chhhcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----VVSKWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~-----l~~~~~ 281 (487)
..|.|.+.+|..+.-.+.........-....+..-++||.|.||||||.|.+.+++-....++ +++.. +.....
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceec
Confidence 568899998887664443322211100011244568999999999999999988765544332 22211 111100
Q ss_pred ---CCcHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----cC------CCCcEE
Q 011400 282 ---GDSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ------SDELVF 347 (487)
Q Consensus 282 ---g~se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~------~~~~Vl 347 (487)
...+..+. ..+-.| ..+|++|||+|.+-.. ....|.+.|+.- .. -+.+.-
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred cccccceeEEeCCchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 00000000 011122 2379999999998532 133466666631 11 123466
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCCCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~~~ 391 (487)
|++++|... .+++++++||+.++.+ ..|+.+.-..+.++.+...
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 888988764 3778899999987665 6677776666776665443
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-05 Score=79.52 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=51.5
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..+..+..+.+.+++.=+..-+.++++++.... .+.. -...+-+||+||+||||||.++.+++++|..+++.+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~----~~~~-~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVA----EFTP-KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHH----Hhcc-CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345556667778888777776677777664110 0010 123356889999999999999999999999888765
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=68.82 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=83.46 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=57.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccchhh-------ccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~-~~i~v~~~~l~~~-------~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
..+++|++||||+|+|||+|.-.+.+.+.. .-..+.-..++.. +.+.. .-+..+.+..... ..+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHhc-CCEEEEeee
Confidence 357899999999999999999999998743 1122222222211 11111 1122222222222 249999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+--- ..+ ..++..|+..+= ...+++|+|+|.+
T Consensus 137 ~V~D------iaD----Amil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVTD------IAD----AMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred eccc------hhH----HHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 6421 122 334444444432 1346788999987
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-05 Score=69.49 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...++++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4569999999999999999999887
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=75.25 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=58.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc----------chhhccCCcHHHHHHHHHHHH--hcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----------VVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~----------l~~~~~g~se~~l~~~f~~a~--~~~p~IL~IDE 307 (487)
+..+||||+||+|||++|+.++.. .-++..+.+. +.......+-..+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 456999999999999999999742 2222222211 000001112223333333333 24467999999
Q ss_pred hhhHHh------hhcccc--hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 308 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 308 iD~L~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
++.+.. .+.... .+......+...++..+..+...+..|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999866 221111 112223345555666666554555556555443
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=75.59 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+++|+|+||||||++|.+++.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.9e-05 Score=72.46 Aligned_cols=80 Identities=18% Similarity=0.322 Sum_probs=53.4
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-ccC----------------------CcHHH
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WRG----------------------DSEKL 287 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~-~~g----------------------~se~~ 287 (487)
..++++..-++++||||+|||+++..++.+. +...++++..++... ... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3446667779999999999999999988754 567888887652110 000 00112
Q ss_pred HHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 288 IKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 288 l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+..+...+....+.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33344445555789999999999864
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=73.03 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---C--CcEEEE-----ec--cc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---K--TTFFNI-----SA--SS 275 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~--~~~i~v-----~~--~~ 275 (487)
.+.|+.-+++.+...+...+..+.- ..|--+=|+|++||||++.++.||+.+ | .+++.. +. ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP-----RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC-----CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 4688888888888888666654431 223345589999999999999999977 2 222211 11 11
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
-...|..+ ....+...+...+-++.++||+|+|.+.
T Consensus 158 ~ie~Yk~e---L~~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKEE---LKNRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHHH---HHHHHHHHHHhcCCceEEechhhhcCHh
Confidence 11122222 2223334445555689999999998643
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0016 Score=69.36 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
.+|..++|+|++|+||||++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 356789999999999999999999877 55666665543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0006 Score=66.63 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=97.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecccchhh-----cc----CC--------cHHHHHHHHHHHH-hcCC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVVSK-----WR----GD--------SEKLIKVLFELAR-HHAP 300 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~---~~i~v~~~~l~~~-----~~----g~--------se~~l~~~f~~a~-~~~p 300 (487)
-+.++|+.|+|||+++|++...++. ..+.++...+... ++ .. .+..-+.+....+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4779999999999999977776632 2234443332211 11 11 1122222333333 3456
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc-cH---HHHhhccccccCCCCC
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL-DA---AMLRRLEKRILVPLPD 376 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L-d~---aL~rRf~~~i~~~~Pd 376 (487)
.++++||++.+.... -+..+. |.+.-.+.... -.++.++-..--..+ -+ .+..|+...+.+++.+
T Consensus 133 v~l~vdEah~L~~~~------le~Lrl----l~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA------LEALRL----LTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH------HHHHHH----HHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999885431 111111 21111111111 123333322111111 11 2233887778888889
Q ss_pred HHHHHHHHHHhCCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 377 TEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 377 ~eeR~~IL~~~l~~~~~~----~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
.++-...++..++..... .+..+..+...+.| .|..|.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998888888888665433 23346678888888 567788888888777654
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.2e-05 Score=83.09 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 316 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~ 316 (487)
++..+.++|+||||||||+++.+|++.++...+.|+++.-.+. |+..-...-.+.+|||+-.-+....
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccc
Confidence 4556789999999999999999999999766777875543211 2222111125888898853332110
Q ss_pred ccchhhHHHHHHHHHHHHHhcCC-cCC------C----CcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 317 EARSEHEASRRLKTELLIQMDGL-TQS------D----ELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 317 ~~~~~~~~~~~i~~~Ll~~ld~~-~~~------~----~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
+-+... .-.-+..|-+.+||. .-. + ..-..|.|||. ..|+..+.-||..++.|..
T Consensus 496 ~Lp~G~--~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQ--GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cCCccc--ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 000113356667765 110 0 00123457775 6789999999988887764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=67.45 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cC-----------------------CcH-----
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RG-----------------------DSE----- 285 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g-----------------------~se----- 285 (487)
++++||||||||+++..++.+. |.++++++..+-.... .| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887754 6667666643221110 00 000
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 286 KLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 286 ~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444455567889999999988764
|
A related protein is found in archaea. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=70.66 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+++...-++++||||+|||+++..+|.+. +.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345566678999999999999999998755 6778888776
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.2e-05 Score=67.95 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
|+|.||||+||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
|
... |
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=3e-05 Score=83.84 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=47.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 273 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~ 273 (487)
-|+|+.|++++++++.+.+..... ++....+-++|.||||+|||+||++||+.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 378999999999999998833221 111234578999999999999999999977 346666544
|
|
| >PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.5e-05 Score=61.41 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 450 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 450 ~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
+||++||..||++++||+++ ++.+|++|+++||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 69999999999999999996 6899999999998
|
It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A .... |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00047 Score=72.23 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccch--hh--
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--SK-- 279 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~l~--~~-- 279 (487)
..+.+++.+.+.+...+....... ....+..++|+||+|+||||.+..+|..+ +..+..+++.... ..
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ 224 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ 224 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH
Confidence 345566666555533322111110 01235679999999999999999999865 2344444433221 00
Q ss_pred ------------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 280 ------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 280 ------------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
........+...+... ....+|+||.+.....+ ...+.++...++........++
T Consensus 225 L~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~L 291 (388)
T PRK12723 225 IQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHL 291 (388)
T ss_pred HHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEE
Confidence 1122333344433333 34579999999655311 1113334444443333335677
Q ss_pred EEEEeCCCCcccHHHHhhc
Q 011400 348 VLAATNLPWELDAAMLRRL 366 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf 366 (487)
|+.+|.....+.. +..+|
T Consensus 292 Vlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 292 AVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred EEcCCCCHHHHHH-HHHHh
Confidence 7777776666663 33444
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=75.57 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=55.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc------CC--------cHHHHHHHHHHHHhc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 298 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~------g~--------se~~l~~~f~~a~~~ 298 (487)
++.+..-++|+|+||+|||+|+..++... +.++++++..+-..... |. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 35566779999999999999999998866 56778887654332210 10 112244566666677
Q ss_pred CCcEEEechhhhHHhh
Q 011400 299 APSTIFLDEIDAIISQ 314 (487)
Q Consensus 299 ~p~IL~IDEiD~L~~~ 314 (487)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.4e-05 Score=68.73 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=38.6
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 276 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l 276 (487)
++|.++..++|...+. ... ...++.++|+|++|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6788999999998874 111 1345789999999999999999998877433 777766554
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00033 Score=73.11 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=54.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cCC--------cHHHHHHHHHHHHhcC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA 299 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g~--------se~~l~~~f~~a~~~~ 299 (487)
+.+..-++|+|+||+|||+++..+|... +.++++++..+-.... .|. .+..+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4566779999999999999999998765 4567777764322110 010 1223455666667778
Q ss_pred CcEEEechhhhHHhh
Q 011400 300 PSTIFLDEIDAIISQ 314 (487)
Q Consensus 300 p~IL~IDEiD~L~~~ 314 (487)
|.+|+||++..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.1e-05 Score=68.99 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
.|++.||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999998888743
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.4e-05 Score=84.61 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=117.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccchhh-----ccCCc--------HHHHHHHHHHHHhcCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSK-----WRGDS--------EKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~~~~l~~~-----~~g~s--------e~~l~~~f~~a~~~~p~IL~ 304 (487)
.-.+|+.|.|||||-.++|++.+.. ..+|+.|+|..+... +.|.. .+..+..+..+. .+.||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 3469999999999999999998876 468999999766432 22211 122222233322 26999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------CCcCCCCcEEEEEEeCCCCc-------ccHHHHhhcccc
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDELVFVLAATNLPWE-------LDAAMLRRLEKR 369 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~~~~VlVIatTn~p~~-------Ld~aL~rRf~~~ 369 (487)
+|||..|.- .+.+.||..++ +.. ..-.|-||++|+++-. +-+.|.=|...
T Consensus 413 ldeIgd~p~-------------~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~- 477 (606)
T COG3284 413 LDEIGDMPL-------------ALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA- 477 (606)
T ss_pred HHHhhhchH-------------HHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC-
Confidence 999977743 23444555554 222 2234788999987521 22333335532
Q ss_pred ccCCCCCHHHHH---HHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCC-----
Q 011400 370 ILVPLPDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP----- 441 (487)
Q Consensus 370 i~~~~Pd~eeR~---~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~----- 441 (487)
..+.+|...+|. .+|.+++.+... .... .++..+..|....|.+++|++-+.++......+
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~----------l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~ 546 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKREND-WRLQ----------LDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIR 546 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccC-CCcc----------CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeE
Confidence 556667665554 455555544333 1122 334556667777777777777666654332211
Q ss_pred -CCCC--------CCCCCCCHHHHHHHHhccCCChhh
Q 011400 442 -DDEL--------PQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 442 -~d~~--------~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.|.. .....+..+.+..|+...+.-+++
T Consensus 547 ~~dlp~~l~~~~~~~~~~~~~~~l~~al~~~~~~is~ 583 (606)
T COG3284 547 VSDLPPELLEEQATPREDIEKAALLAALQATNGNISE 583 (606)
T ss_pred cccCCHHHHhhhcccccchHHHHHHHHHHHcCCCHHH
Confidence 1110 112346677788888888777664
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=73.91 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecccchh----------hccC------CcHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVVS----------KWRG------DSEKLIKVLFELA 295 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~-~~~i~v~~~~l~~----------~~~g------~se~~l~~~f~~a 295 (487)
+.....++|.||+|+||||++..||..+ | ..+..++...... ...| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 3445679999999999999999999864 3 3444444433210 0001 11112222222
Q ss_pred HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHH
Q 011400 296 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 362 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL 362 (487)
+.....+|+||.+..... ...+.+.+..+.........++|+.+|+..+.++..+
T Consensus 212 ~l~~~DlVLIDTaG~~~~------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQR------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCcc------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 223457999999843211 1112233444444433445677888888777766543
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00081 Score=79.00 Aligned_cols=136 Identities=24% Similarity=0.244 Sum_probs=88.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh------h-cc----CCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------K-WR----GDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~------~-~~----g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
-.+++||-|.||+|||+|..++|+..|..++.++.++-.. . .+ |+....-..++...+. ..-+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeeh
Confidence 3467999999999999999999999999999999875432 1 11 2222222222222222 36899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhc-----------CCcCCCCcEEEEEEeCCCC------cccHHHHhhccccc
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRI 370 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-----------~~~~~~~~VlVIatTn~p~------~Ld~aL~rRf~~~i 370 (487)
+.... +.++..|-..+| -.-.......|+||-|..+ .|+..++.||.. +
T Consensus 1620 iNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V 1685 (4600)
T COG5271 1620 INLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-V 1685 (4600)
T ss_pred hhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-E
Confidence 96543 222322322222 1111223455666555443 499999999955 8
Q ss_pred cCCCCCHHHHHHHHHHhCCC
Q 011400 371 LVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.+...+.++...|+......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 89999999999998888754
|
|
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=71.68 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
..+++|+.|||+-|.|||+|.-.....+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457899999999999999999999887743
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=67.71 Aligned_cols=40 Identities=20% Similarity=0.505 Sum_probs=32.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 281 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~ 281 (487)
.+++.|+||+||||+|+.++..++.+++.++.-.....+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~ 41 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ 41 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc
Confidence 4899999999999999999999999888776544333333
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.9e-05 Score=87.25 Aligned_cols=199 Identities=21% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccC-chhhcCCC--CCCe-eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGLL--SPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~-~~~~~~~~--~~~~-gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
+....++.|.......+.+++...... +..+.... .... .++++||||+|||+.+..+|.++|..+++.+.++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 334455666665555666665443111 11122111 1112 3699999999999999999999999999999988765
Q ss_pred hccCC-------cHHHHHHHHH---HHH-hcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 279 KWRGD-------SEKLIKVLFE---LAR-HHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 279 ~~~g~-------se~~l~~~f~---~a~-~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
++... ....+...+. ... ... ..||++||+|.+... .+.....+...+. ... +
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----------dRg~v~~l~~l~~---ks~--~ 460 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----------DRGGVSKLSSLCK---KSS--R 460 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----------hhhhHHHHHHHHH---hcc--C
Confidence 53311 1112222220 000 011 239999999988651 1222333333333 111 3
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
-+|+++|.........+.|....++|+.|+..+...-+..++...... .+..++++.+.+ ++||++....
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 367888887776665666665778999999988887666666444333 344567777766 5677765443
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=68.16 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+.-++|.||||+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35678999999999999999998866 4555555543
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00044 Score=66.39 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=31.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++.+..-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35566779999999999999999999876 5677777653
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.4e-05 Score=68.94 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999888854
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00051 Score=66.97 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=48.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------c---------------cC--
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W---------------RG-- 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~---------------~g-- 282 (487)
+++..-+++.||||||||+++..++... +...++++..+-... + .+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4566779999999999999986655544 556666654321110 0 00
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 283 DSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 283 ~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
..+..+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012344445555555678999999998765
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=62.21 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.6
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|.|+.-+++.+..++...+..+.. ..|--+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC-----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46899999999999999777654421 222345589999999999999999986
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00014 Score=68.88 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=56.2
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecccchhhccCC----cHH-------------HHHHHHHHHHhcCCc
Q 011400 243 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWRGD----SEK-------------LIKVLFELARHHAPS 301 (487)
Q Consensus 243 vLL~GppGtGKT~LArai-A~el---~~~~i~v~~~~l~~~~~g~----se~-------------~l~~~f~~a~~~~p~ 301 (487)
.+++|.||+|||+.|-.. .... |.+++. +...+.-..... ... .......-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 4432 666554 443232111100 000 000111111111458
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCC
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVP 373 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~ 373 (487)
+|+|||++.+.+.+...... . ...+..+.... ...+-|+.+|..+..+|+.+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~~~---~----~~~~~~l~~hR--h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK---V----PEIIEFLAQHR--HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGGGCC--CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc---c----hHHHHHHHHhC--cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 99999999998876542110 0 11234443222 2335577899999999999988766666554
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00063 Score=66.23 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------c-----------------
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W----------------- 280 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~----------------- 280 (487)
.+++.+..++++|+||+|||+++..++.+. +.+.++++..+-... +
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 345667789999999999999999997653 666766665332111 0
Q ss_pred --cCCcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 281 --RGDSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 281 --~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+..+..+........|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00112334444455555688999999998764
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00059 Score=69.69 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=53.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
++++.+-++|+||||||||+|+-.++.+. +.+.++++.....+. .+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35666779999999999999988876654 566777765432211 11123333444444455
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 667899999999998764
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=65.44 Aligned_cols=174 Identities=17% Similarity=0.110 Sum_probs=94.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-------------------------------
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 283 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~------------------------------- 283 (487)
.++.-+.+.||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 356679999999999999999987766 6778888776543211100
Q ss_pred cHHHHHHHHHHH---HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--C-CCcEEEEEEeCCCCc
Q 011400 284 SEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--S-DELVFVLAATNLPWE 357 (487)
Q Consensus 284 se~~l~~~f~~a---~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--~-~~~VlVIatTn~p~~ 357 (487)
........|+.. ....|-||+|||+|.+.... .........|-...+.-.. . ....++++.+..+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 111122223221 22467899999999997531 1122333333332221111 1 122344444433322
Q ss_pred ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 358 Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
....-.+ .+...+.++.-+.++-..+++.+-.. . ....++.+-..|.|.. .=+..+|...+
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP-~Lv~~~~~~l~ 244 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP-YLVQKACYLLV 244 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 2111111 33445666767999988888877422 1 1223788888888864 33444444443
|
|
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00051 Score=74.50 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=28.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 273 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-v~~ 273 (487)
+..++++|+||||||||++|-+|++.++..++. ++.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 334689999999999999999999998654433 553
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=65.53 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=31.1
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~------~~~i~v~~~~ 275 (487)
.++.+..-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 345566678999999999999999998764 3 5667776643
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00077 Score=68.91 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=53.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
+++..+-+.++||||||||+||-.++.+. +...++++...-.+. .+...+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 35566778999999999999999887654 667777776432111 11122333333334445
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 667899999999999863
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=63.11 Aligned_cols=34 Identities=41% Similarity=0.637 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
|++.||||+||||+|+.++..++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44455544443
|
... |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00075 Score=65.39 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++++..-+.|+||||||||+++..++... +...++++..+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 345666778999999999999999998543 25677777644
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0001 Score=73.10 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=49.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH------HhCCcEEEEecccchhhcc-CCcHHHHHHHHHH--------HHhcCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWR-GDSEKLIKVLFEL--------ARHHAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~------el~~~~i~v~~~~l~~~~~-g~se~~l~~~f~~--------a~~~~p~IL~ 304 (487)
...+||.||.|.|||+||+.|.. ++..+|++|+|..+.+... ...-..++..|.- .+....++||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34599999999999999999854 5578999999998864311 0000111222211 1223357999
Q ss_pred echhhhHHhh
Q 011400 305 LDEIDAIISQ 314 (487)
Q Consensus 305 IDEiD~L~~~ 314 (487)
+|||..|..+
T Consensus 288 ldeigelgad 297 (531)
T COG4650 288 LDEIGELGAD 297 (531)
T ss_pred hHhhhhcCcc
Confidence 9999887644
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0005 Score=63.05 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
+.-++|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 34688999999999999999999997667677665554
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=62.42 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..++++...+|++||||+|||+++..++.+. |.+.++++.
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3456778889999999999999998876543 566666654
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0027 Score=66.95 Aligned_cols=132 Identities=21% Similarity=0.183 Sum_probs=73.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
-++++||.+|||||+++.+.......+++++..++....... ....+ .+..+.......||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCchh--------
Confidence 789999999999999999888876556666655554332211 11111 12222222336999999987631
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCCCHHHHHH-------------HHH
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA-------------MFE 385 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~Pd~eeR~~-------------IL~ 385 (487)
. .+. +-...|.-. . .+++ .+++.. ..+.+.+..|. ..+.+.+-+..|... .++
T Consensus 109 --W-~~~---lk~l~d~~~--~-~v~i-tgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 109 --W-ERA---LKYLYDRGN--L-DVLI-TGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred --H-HHH---HHHHHcccc--c-eEEE-ECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 0 112 222222111 1 3433 333333 23445566685 447777778888754 566
Q ss_pred HhCCCCCCC
Q 011400 386 SLLPSQTGE 394 (487)
Q Consensus 386 ~~l~~~~~~ 394 (487)
.++...+..
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666555543
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=68.41 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=85.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
..|.|.+++|+.+..++..-- ......+ ++..-+|||.|.|||.||-|.+-+-+-...-+|.-.-.. .-.|-+
T Consensus 331 PSIfG~~DiKkAiaClLFgGs--rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGS---SAAGLT 405 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGS--RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGS---SAAGLT 405 (729)
T ss_pred chhcCchhHHHHHHHHhhcCc--cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCc---ccccce
Confidence 468999999999998774321 1222222 345568999999999999999998776544433321100 000100
Q ss_pred HHHHH-----HHHHH--H-HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH-hcCCc-CCCCcEEEEEEeCC
Q 011400 285 EKLIK-----VLFEL--A-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ-MDGLT-QSDELVFVLAATNL 354 (487)
Q Consensus 285 e~~l~-----~~f~~--a-~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~-ld~~~-~~~~~VlVIatTn~ 354 (487)
...++ .++-+ | -....+|++|||+|++-....- .-+++.. .+-+.. =.|+. .-+.+.-|++++|.
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRV--AIHEAME---QQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRV--AIHEAME---QQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhh--HHHHHHH---hhhHHHhhhcceeeecchhhhhhhcCC
Confidence 00000 00000 0 0012379999999998543111 1111111 111111 11221 12234557888887
Q ss_pred CCc-------------ccHHHHhhccccccCCCCCHH
Q 011400 355 PWE-------------LDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 355 p~~-------------Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
+.. +-+.+++||+.++-+.--..+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDE 517 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcc
Confidence 621 347899999987766554333
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00049 Score=66.30 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=48.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEec-ccchhhccCC-------------cHHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELAR 296 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el--------~~~~i~v~~-~~l~~~~~g~-------------se~~l~~~f~~a~ 296 (487)
.+.+.|+.|||||||||+.|-+|.-+ ...+..++. +++.+...|. ..-+-..++...+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 45679999999999999999999866 233444443 2333222221 1123345667788
Q ss_pred hcCCcEEEechhhh
Q 011400 297 HHAPSTIFLDEIDA 310 (487)
Q Consensus 297 ~~~p~IL~IDEiD~ 310 (487)
.+.|-|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 89999999999954
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00085 Score=63.44 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
-.+++||||+|||+++..++..+ +..++.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999888876 55555553
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=65.92 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=92.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh--------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-------- 278 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-------- 278 (487)
..+.+.+...+.|...+...- -.-|..|.|+|-.|||||.+++.+.+.++.+.+.+++-+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 356677888888888763211 134567899999999999999999999999998888755421
Q ss_pred -------hccCCcH----HHHHH---HHHH--HHhc--CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 279 -------KWRGDSE----KLIKV---LFEL--ARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 279 -------~~~g~se----~~l~~---~f~~--a~~~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
...|... ..+.. .|.+ +..+ +...|++|.+|.+-.. ...+++.++..-. +.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~e-l~ 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYE-LL 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHH-Hh
Confidence 1111111 11222 2222 1111 3458899999998521 1234444443332 22
Q ss_pred CCCCcEEEEEEeCCCCcccHHHHhh---c-cccccCCCCCHHHHHHHHHHhCC
Q 011400 341 QSDELVFVLAATNLPWELDAAMLRR---L-EKRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~Ld~aL~rR---f-~~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
+.+. + +|.....++ ......+ + -..++||.|+.++-..|+.+--.
T Consensus 146 ~~~~-i-~iils~~~~--e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 146 NEPT-I-VIILSAPSC--EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CCCc-e-EEEEecccc--HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2332 2 222222211 1122222 1 24578899999999998877654
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0028 Score=60.23 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=24.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+..++.||||||||++++.+...+ +..++.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 468889999999999999988765 556665543
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00058 Score=68.06 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccchhh-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSK- 279 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~-~~~l~~~- 279 (487)
++++++-.+...+.|.+++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 456666666667777666532 224589999999999999999988773 3344442 1121111
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
............+..+....|++|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 011111234556666777899999999994
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=60.52 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHH--------------------HHHHHHHHHHhcCCc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS 301 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~--------------------~l~~~f~~a~~~~p~ 301 (487)
.+++.|+||+|||++|..++.+++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777765443211 1111 233333221 13356
Q ss_pred EEEechhhhHHhhh
Q 011400 302 TIFLDEIDAIISQR 315 (487)
Q Consensus 302 IL~IDEiD~L~~~r 315 (487)
+++||-+..+....
T Consensus 79 ~VlID~Lt~~~~n~ 92 (170)
T PRK05800 79 CVLVDCLTTWVTNL 92 (170)
T ss_pred EEEehhHHHHHHHH
Confidence 89999999987643
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0069 Score=63.40 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.+.+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..||..+ +..+..+++
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3556666666664444322211 1234679999999999999999999877 444555554
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=61.42 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+-++|.||.|+||||+.+.++..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467899999999999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00044 Score=65.83 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=41.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-ccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~----~~i~v~~-~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
-++|.||+|+||||++++++..+.. .++.+.. .++.. ..+|.........+..+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999987742 2232211 11110 01121122344455566667899999999
Q ss_pred h
Q 011400 308 I 308 (487)
Q Consensus 308 i 308 (487)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00021 Score=65.74 Aligned_cols=31 Identities=42% Similarity=0.548 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987654
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00044 Score=68.74 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l~~ 278 (487)
..+++++.-.....+.+.+++.... ....++++.||+|+||||+++++...+. ..++.+.. .++.-
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 3456777666666666666664432 2346899999999999999999999873 33444321 12211
Q ss_pred hcc-------CCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 279 KWR-------GDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 279 ~~~-------g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
... .........++..+-...|++|+++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 0122345556677777889999999994
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0002 Score=66.75 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999887654
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0028 Score=61.24 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh--------------------------c----
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------W---- 280 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~--------------------------~---- 280 (487)
.+++++..+|+.||||||||+++..++.+. |.+.++++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 445677789999999999999999876533 777777764332110 0
Q ss_pred ---cCCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 281 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 281 ---~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
.......+..+.+......+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123344555556666778899999999999
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0019 Score=60.01 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=47.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-c----------------cCCcHHHHHHHHHHHHhcCCcEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL 305 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~-~----------------~g~se~~l~~~f~~a~~~~p~IL~I 305 (487)
+|+.|++|+|||++|..++...+.+.+++....-.+. + ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999987777777765433211 0 0112223333332221 4679999
Q ss_pred chhhhHHhhhc
Q 011400 306 DEIDAIISQRG 316 (487)
Q Consensus 306 DEiD~L~~~r~ 316 (487)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99998877643
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00098 Score=57.33 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
+++++||+|+|||+++-.++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887766
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00027 Score=63.60 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887654
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=65.83 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988775
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.005 Score=61.62 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+++-++|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445678899999999999999998876 5555555543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0029 Score=60.92 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.001 Score=69.41 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=45.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------chhhccCCcHHHHH---HHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT-----T-FFNISASS---------------VVSKWRGDSEKLIK---VLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~-----~-~i~v~~~~---------------l~~~~~g~se~~l~---~~f~~a~ 296 (487)
...+|.||||+|||+|++.|++.... . ++.+...- +.+.+.......++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45889999999999999999997743 2 22222111 11222222333333 2333333
Q ss_pred h----cCCcEEEechhhhHHhhh
Q 011400 297 H----HAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 297 ~----~~p~IL~IDEiD~L~~~r 315 (487)
. ....+|||||++.+....
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHH
Confidence 2 245699999999997654
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00041 Score=72.80 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
...++++.||+|||||+++.+++... | -.++.+.+..... ...+.. -....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhh--hccCCEEEEEcCCCCc
Confidence 45689999999999999999988762 3 2222233322111 011111 1235799999998754
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0078 Score=69.70 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=78.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--ccch-hhc------------cC---------------CcHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVV-SKW------------RG---------------DSEKLIKV 290 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~--~~l~-~~~------------~g---------------~se~~l~~ 290 (487)
+-++++||+|.|||+++...+...+ ++.-++. .+-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999988776 5544443 2110 000 00 00112233
Q ss_pred HHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHHhhccc
Q 011400 291 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 368 (487)
Q Consensus 291 ~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~rRf~~ 368 (487)
++..... ..|.+|+|||++.+... .....+..|+..+ .....+|| ++.....++- .++- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333333 56889999999877311 1122333343322 22334444 5544222321 2211 111
Q ss_pred cccCC----CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 369 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 369 ~i~~~----~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
.+.+. .-+.+|-.+++...+.... .......+.+.|+|..-
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~--~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI--EAAESSRLCDDVEGWAT 220 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCC--CHHHHHHHHHHhCChHH
Confidence 23333 4588888888876654321 22345667777777643
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00027 Score=63.57 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999988874
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00032 Score=65.29 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
|++.||||+||||+|+.+|+.++. ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999985 445555554
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0025 Score=68.34 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cCC--------cHHHHHHHHHHHHhc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHH 298 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g~--------se~~l~~~f~~a~~~ 298 (487)
++.+..-++|.|+||+|||+|+..++... +.++++++..+-.... .|. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34566779999999999999999998765 4567777764432211 010 011244555666677
Q ss_pred CCcEEEechhhhHHh
Q 011400 299 APSTIFLDEIDAIIS 313 (487)
Q Consensus 299 ~p~IL~IDEiD~L~~ 313 (487)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998864
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >KOG2383 consensus Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0081 Score=62.22 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.+|+|++|||..|||||+|.-.+...+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999998887554
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.027 Score=59.28 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.3
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
..|..+|-.|.-+.|.+.-.+.+.-+..+...+...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 347778877766778888888888888888877553
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00034 Score=65.55 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
.++|.||||+||||+++.+|+.++..++ +..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 4899999999999999999999986554 4445543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.005 Score=65.50 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~ 275 (487)
.++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 34578999999999999999888754 34566666544
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=64.92 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=51.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
+++..+-++|+||||||||+|+-.++.+. +...++++...-.+. .+...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35566778999999999999999887544 667777765442111 01112333333333445
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999875
|
|
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=70.98 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=84.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE---------eccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI---------SASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v---------~~~~ 275 (487)
..|.|.+.+|+.|.-++..-.. .....+ ++..-+||+.|.|-|.||-|.|.+.+-....+-.. .+.-
T Consensus 301 PSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 4689999999999877744321 112222 44556799999999999999999988553222111 1110
Q ss_pred chhhccCCcHHHHHH-HHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh------cCC-cCCCCcEE
Q 011400 276 VVSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM------DGL-TQSDELVF 347 (487)
Q Consensus 276 l~~~~~g~se~~l~~-~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l------d~~-~~~~~~Vl 347 (487)
..++ ...++.+.. ..-.| .-+|++|||||++..- .+....+.+++- .|+ ..-+.+.-
T Consensus 379 TtD~--eTGERRLEAGAMVLA---DRGVVCIDEFDKMsDi----------DRvAIHEVMEQqtVTIaKAGIHasLNARCS 443 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVLA---DRGVVCIDEFDKMSDI----------DRVAIHEVMEQQTVTIAKAGIHASLNARCS 443 (818)
T ss_pred eecc--ccchhhhhcCceEEc---cCceEEehhcccccch----------hHHHHHHHHhcceEEeEeccchhhhcccee
Confidence 0111 112333321 00111 1269999999998532 122222222211 122 12234577
Q ss_pred EEEEeCCCCc-------------ccHHHHhhccccccC
Q 011400 348 VLAATNLPWE-------------LDAAMLRRLEKRILV 372 (487)
Q Consensus 348 VIatTn~p~~-------------Ld~aL~rRf~~~i~~ 372 (487)
|++++|..+. |+..|++||+..+.+
T Consensus 444 VlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 444 VLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred eeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 8999997642 788999999875433
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=61.87 Aligned_cols=69 Identities=25% Similarity=0.283 Sum_probs=41.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFELAR 296 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~~a~ 296 (487)
|+-++|.||+|+||||.+-.+|..+ +..+.-+++...... +. . .....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998876 444444443322110 00 1 12233445555555
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.....+|+||=.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 555579999876
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=66.83 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=46.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-ccch-------hhccCCcHHHHHHHHHHHHhcCCcEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLD 306 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~-~~l~-------~~~~g~se~~l~~~f~~a~~~~p~IL~ID 306 (487)
..++++.||+|+||||++++++..+. ..++.+.- .++. ....+........++..+-.+.|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 33433321 1111 00011111145667777888899999999
Q ss_pred hhh
Q 011400 307 EID 309 (487)
Q Consensus 307 EiD 309 (487)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 993
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0025 Score=64.09 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 275 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~-~~~i~v~~~~ 275 (487)
+.+.+.+.+.+...+........+...+..++|.||+|+||||++..+|..+ + ..+..++...
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3445555555544332111111122345678999999999999999998866 3 5666666544
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=64.53 Aligned_cols=31 Identities=42% Similarity=0.623 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999888765
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=61.27 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+..+.+.......+..++.. ..-+++.||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455666566655554421 136899999999999999999985
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0079 Score=59.34 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=28.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.++++...+|++||||||||+++..++.+. |-+.++++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 345667789999999999999998876542 455555543
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00055 Score=68.37 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=43.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cccchhhcc-------CC------cHHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT----------TFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~----------~~i~v~-~~~l~~~~~-------g~------se~~l~~~f~~a~ 296 (487)
.+++|.||+|+||||+.+.++..+.. .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999998732 222221 112211111 10 1112334666777
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.+.|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00042 Score=64.42 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=29.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+-++|.|+||+||||+|+.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999999887776654433
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0068 Score=59.23 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=95.2
Q ss_pred CeeEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEecccchhhc-cCCcHHHHHHHHHHHHh----cCCcEEE
Q 011400 240 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELARH----HAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppG-tGKT~LAraiA~el~~---------~~i~v~~~~l~~~~-~g~se~~l~~~f~~a~~----~~p~IL~ 304 (487)
.+..||.|..+ +||..++..+++.+.. .++.+....-..+. ..-.-..++.+.+.+.. ....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46799999998 9999999998887622 23343321100000 01123445555444432 2345999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
|+++|.|.. ...+.||..++. ++..+++|..|..+..+.+.+++|+.. +.+..|+...-.++.
T Consensus 95 I~~ae~mt~-------------~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMNL-------------NAANSCLKILED---APKNSYIFLITSRAASIISTIRSRCFK-INVRSSILHAYNELY 157 (263)
T ss_pred EechHHhCH-------------HHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCHHHHHHHH
Confidence 999999853 345668888873 344566777888889999999999955 889999888888877
Q ss_pred HHhCCCCCCCCCCCHHHHHHH
Q 011400 385 ESLLPSQTGEESLPYDLLVER 405 (487)
Q Consensus 385 ~~~l~~~~~~~~~~l~~la~~ 405 (487)
...+...... ..++.+.+.
T Consensus 158 ~~~~~p~~~~--~~l~~i~~~ 176 (263)
T PRK06581 158 SQFIQPIADN--KTLDFINRF 176 (263)
T ss_pred HHhccccccc--HHHHHHHHH
Confidence 7776554332 224444443
|
|
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=61.34 Aligned_cols=23 Identities=52% Similarity=0.814 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
++|+|+||+|||++|+.+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999983
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=58.27 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998775
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=74.92 Aligned_cols=134 Identities=18% Similarity=0.193 Sum_probs=86.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh--hccCC----cHH---HHHHHHHHHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD----SEK---LIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~--~~~g~----se~---~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
-.+||.||+.+|||++...+|.+.|..|+.++-.+... .|.|. ... .-..++-.|-..+ --|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 35999999999999999999999999999998755432 23332 111 1112233333333 47899999654
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCc-----------CCCCcEEEEEEeCCCC------cccHHHHhhccccccCCC
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLT-----------QSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-----------~~~~~VlVIatTn~p~------~Ld~aL~rRf~~~i~~~~ 374 (487)
.. .++..|-..+|+.. .+....+++||-|.|. .|..|++.||-. ++|..
T Consensus 968 pT-------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFdd 1033 (4600)
T COG5271 968 PT-------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDD 1033 (4600)
T ss_pred cH-------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhccc
Confidence 32 23333333444321 1223455666667774 388999999954 78877
Q ss_pred CCHHHHHHHHHHhCC
Q 011400 375 PDTEARRAMFESLLP 389 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~ 389 (487)
-.+++...||+..++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 777888888887764
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00053 Score=64.24 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+||||+++.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877654
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00057 Score=64.08 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
..+++.||||+||||+++.+|+.+|.+.+. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0068 Score=60.12 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
+.+..-++|.||||+|||+++..++... +.++++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4556678999999999999999887764 566666654
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00049 Score=61.22 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+++.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988775
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=62.05 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=26.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 275 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~ 275 (487)
+.-++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4558899999999999999999754 44455555433
|
|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0005 Score=61.87 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876553
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0054 Score=58.32 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+..-++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3445699999999999999999994
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.004 Score=59.90 Aligned_cols=68 Identities=25% Similarity=0.298 Sum_probs=39.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecccc-hhhc------cCCcHHHHHHHHHHH--HhcCCcEEEechhh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSV-VSKW------RGDSEKLIKVLFELA--RHHAPSTIFLDEID 309 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~-i~v~~~~l-~~~~------~g~se~~l~~~f~~a--~~~~p~IL~IDEiD 309 (487)
+..++|||+||+|||++|..+ +.++ +.+..+.. ...+ .-.+-..+...+..+ ......+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 346999999999999999988 3332 22222211 0011 011233344444332 23456799999888
Q ss_pred hH
Q 011400 310 AI 311 (487)
Q Consensus 310 ~L 311 (487)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00051 Score=64.34 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
|+|.||||+|||++++.||+.++..++. ..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7999999999999999999998876654 44443
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00066 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56688999999999999999999999999998655
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00072 Score=63.39 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.|+|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 455566655543
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=67.16 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=47.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccchh------------h-ccCCcHHHHHHHHHHHHhcCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~-~~~l~~------------~-~~g~se~~l~~~f~~a~~~~p~I 302 (487)
...++++.|++|+||||+++++...+. ..++.+- ..++.- . ..|...-....++..+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 346899999999999999999999874 2333331 112210 0 01122223566778888899999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++.|+.
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=63.68 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
....++|.||+|+|||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999998754
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0046 Score=60.58 Aligned_cols=134 Identities=12% Similarity=0.213 Sum_probs=74.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhhc--------cCC---c---HHHH-------HHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW--------RGD---S---EKLI-------KVLF 292 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~~--------~g~---s---e~~l-------~~~f 292 (487)
...+-.+++.|++|||||+++..+...+... ++.+.. .....+ +.. . +..+ ....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3455679999999999999999998877432 232222 111111 000 0 1111 1111
Q ss_pred HHHHh---cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011400 293 ELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 369 (487)
Q Consensus 293 ~~a~~---~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~ 369 (487)
..... ..+.+|++||+-. . .........++. ..+--.+.+|..+.....+++.++.-.+..
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~---~--------~~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~ 152 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGD---K--------KLKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYF 152 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCC---c--------hhhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEE
Confidence 11111 2357999999732 0 011222233332 223334777888888889999998877776
Q ss_pred ccCCCCCHHHHHHHHHHhC
Q 011400 370 ILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 370 i~~~~Pd~eeR~~IL~~~l 388 (487)
+.+. .+......|++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 6554 46666666666553
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00071 Score=65.03 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776644
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0076 Score=59.83 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++++..-++++||||||||+++..++.+. |-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45667779999999999999999987643 5566666543
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0081 Score=62.59 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=60.1
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----h----
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----K---- 279 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~---- 279 (487)
+.+.+++.+.+.+...+..+..+. ..+++-++|.||+|+||||++..+|..+ +..+..+++..... .
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHH
Confidence 357788888887766554443332 3456779999999999999999999866 44555555433211 0
Q ss_pred --------ccCCcHHHHHHHHHHHHh-cCCcEEEechhhh
Q 011400 280 --------WRGDSEKLIKVLFELARH-HAPSTIFLDEIDA 310 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~ 310 (487)
+.......+...+..++. ....+|+||=.-.
T Consensus 257 ae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 257 ADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred hhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 112233444444444442 2347888887643
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0013 Score=68.00 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=44.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-ccch---------hhccCCcHHHHHHHHHHHHhcCCcEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 305 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~-~~l~---------~~~~g~se~~l~~~f~~a~~~~p~IL~I 305 (487)
...+++.||+|+||||+.+++...+. ..++.+.- .++. ....|.........+..+-...|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35689999999999999999998774 23333321 1111 0111221223445566666789999999
Q ss_pred chhh
Q 011400 306 DEID 309 (487)
Q Consensus 306 DEiD 309 (487)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00061 Score=62.23 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+-+.|||||||||+++.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999876
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=62.35 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
-++|+||+|||||.+|=++|+.+|.+++..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 37899999999999999999999999999987665543
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00062 Score=63.13 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998765
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.037 Score=58.79 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---------------hcc----C-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------KWR----G-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---------------~~~----g-~se~~l~~~f~~a 295 (487)
++.-++|.|++|+||||++..+|..+ |..+..+++..... .+. + .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 66666666533210 001 0 1112233345555
Q ss_pred HhcCCcEEEechhh
Q 011400 296 RHHAPSTIFLDEID 309 (487)
Q Consensus 296 ~~~~p~IL~IDEiD 309 (487)
+.....+|+||=.-
T Consensus 179 ~~~~~DvViIDTaG 192 (429)
T TIGR01425 179 KKENFDIIIVDTSG 192 (429)
T ss_pred HhCCCCEEEEECCC
Confidence 55556899998764
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.02 Score=60.64 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=48.0
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
...+++|.+.....|.+.+...- ...++-+.|.||+|||||++++.+...++...+.++..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 36789999999999998874311 12335688999999999999999999998777766654
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0087 Score=56.19 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00088 Score=62.44 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++.-|++.|++|+|||++++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999887776543
|
|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=57.50 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 666777765444
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00063 Score=62.17 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++|.||+|+||||+++.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866543
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=61.74 Aligned_cols=72 Identities=26% Similarity=0.401 Sum_probs=45.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cchhh---cc----------CCcHHHHHHHHHHHHhcCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK---WR----------GDSEKLIKVLFELARHHAPS 301 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-~l~~~---~~----------g~se~~l~~~f~~a~~~~p~ 301 (487)
.....++|.||+|+||||++++++..+. ...+.+... ++... +. +........++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998763 223322211 11100 00 11123355566667778899
Q ss_pred EEEechhh
Q 011400 302 TIFLDEID 309 (487)
Q Consensus 302 IL~IDEiD 309 (487)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999993
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0009 Score=65.27 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=27.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..++|.||||+||||+|+.+|+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998766655
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=68.74 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=44.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-cch-----------hhccCCcHHHHHHHHHHHHhcCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~~-~l~-----------~~~~g~se~~l~~~f~~a~~~~p~IL 303 (487)
..+|+.||+|+||||+++++.+++. ..++.+.-. ++. ...+|.........+..+-...|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999988772 344544211 111 01112111234455666677899999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++.|+.
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0067 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.++-.++|+||+|||||+|.|.+|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3556679999999999999999999854
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0063 Score=61.88 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
++....-++++||||+|||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 34556668999999999999999998763 23677777654
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0011 Score=61.78 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=29.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
...|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999988877653
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=55.53 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.++++...+++.|+||+|||+++..++.+. +.+.++++..
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345667789999999999999999887643 6667666653
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0034 Score=58.76 Aligned_cols=72 Identities=22% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccc--hhhccCCc-HHHHHHHHHHHHhcCCcEEEechhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSV--VSKWRGDS-EKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l--~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.+..-+.|.||.|+|||||++.++..... --+.++...+ ......-+ ...-+..+..+-...|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 45567889999999999999999986521 1122222111 00100011 1223334555666788999999974
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0053 Score=62.74 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
+++...-++|+||||+|||+++-.+|... +...++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35566678999999999999999998763 33677777654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0089 Score=56.80 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred eeEEEEcCCCChHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA 261 (487)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK03731 aroL shikimate kinase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.001 Score=61.29 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..++|.|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0039 Score=57.31 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchh--------hccC----C-cHHHHHHHHHHHHhcCCc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS--------KWRG----D-SEKLIKVLFELARHHAPS 301 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~--------~~~g----~-se~~l~~~f~~a~~~~p~ 301 (487)
+.+...+.|.||+|+|||+|.+.++.... .--+.++..++.. ...+ - .....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998652 1112333222110 0010 0 112333455666677899
Q ss_pred EEEechhh
Q 011400 302 TIFLDEID 309 (487)
Q Consensus 302 IL~IDEiD 309 (487)
+|++||-.
T Consensus 103 illlDEP~ 110 (163)
T cd03216 103 LLILDEPT 110 (163)
T ss_pred EEEEECCC
Confidence 99999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0074 Score=61.65 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++....-+.|+||||+|||+++..+|-.. +...++++...
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 345666678899999999999998877422 35677777544
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.001 Score=62.70 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+++.||||+|||++++.+++.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999998776554
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0026 Score=61.61 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+.-|.+.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34568899999999999999999998 6677777665553
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.038 Score=56.62 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhccccCc-hhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 213 ENAKRLLKEAVVMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~-~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+++.+.+.+...+... ..+.....++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 445555655554433211 1111111345678899999999999999999877 445555544
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0014 Score=72.21 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=41.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----hhhccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~-~~~l-----~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...++|++||||+||||++++++..+. ..+..+. ..++ ...+.. ...........+-...|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 346899999999999999999998874 2232321 1111 111210 00111222233345779999999984
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.07 Score=53.30 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=54.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHH
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
+++-.+++.+.+..+.... ..|..+.||.|.+|+||++++|..|.-.+..++.+....-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 3455556666666544221 14567899999999999999999999989999888754321 11233455
Q ss_pred HHHHHHHHH-hcCCcEEEechh
Q 011400 288 IKVLFELAR-HHAPSTIFLDEI 308 (487)
Q Consensus 288 l~~~f~~a~-~~~p~IL~IDEi 308 (487)
++.++..+. ...|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666555 345777777553
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00091 Score=62.76 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
++.|+|.|++|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357999999999999999999999999988765
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=62.65 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
|+|.|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466777765444
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.001 Score=61.82 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
-+++.||||+||||+++.+++.+|...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999998765443
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.044 Score=55.86 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHHHh--c-CCcEEEechhhhHHhhhcccc----hhhHHHHHHHHHHHHHhcCCcCCCCcEEE--EEEeCC---C
Q 011400 288 IKVLFELARH--H-APSTIFLDEIDAIISQRGEAR----SEHEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---P 355 (487)
Q Consensus 288 l~~~f~~a~~--~-~p~IL~IDEiD~L~~~r~~~~----~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV--IatTn~---p 355 (487)
+..++++... . .|.++-||++..+.....-.. .-+...-.+...|+..+.+-..-....+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444444433 2 477888999999987632110 11112234555566664443332222333 555432 2
Q ss_pred C--cccHHHHhhcc---------------------ccccCCCCCHHHHHHHHHHhCCCCCCC
Q 011400 356 W--ELDAAMLRRLE---------------------KRILVPLPDTEARRAMFESLLPSQTGE 394 (487)
Q Consensus 356 ~--~Ld~aL~rRf~---------------------~~i~~~~Pd~eeR~~IL~~~l~~~~~~ 394 (487)
. .++.++..+=. ..+.++..+.+|-+.+++.+....-..
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 2 35555554321 146788889999999999987665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=68.91 Aligned_cols=94 Identities=21% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCee-EEEEcCCCChHHHHHHHHHHHhCCcEEEEe-ccc---c
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASS---V 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~g-vLL~GppGtGKT~LAraiA~el~~~~i~v~-~~~---l 276 (487)
-..++++++......+.+...+.. |.| +|++||.|+||||...++.++++.+...+. ..+ .
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 345577777777777777777633 345 678999999999999999999865433221 111 1
Q ss_pred hhhccCCcH--H----HHHHHHHHHHhcCCcEEEechhh
Q 011400 277 VSKWRGDSE--K----LIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 277 ~~~~~g~se--~----~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.-..+.+.. . .....++..-...|+||++.||.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111111100 0 12233444556789999999994
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0013 Score=64.39 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+..+++.||||+||||+|+.+|+.+|.. .++.+++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 345678999999999999999999999864 566666653
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0078 Score=62.16 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
++....-..|+||||||||+|+..+|-.. +...++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 35555668899999999999999887422 24667776643
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00091 Score=57.83 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el 264 (487)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
... |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=57.05 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34566679999999999999999887754 677777764
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=56.18 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---------------------------------hc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------------------------KW 280 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---------------------------------~~ 280 (487)
++.+.-+++.|+.|||||.|.+.++.-+ +....+++...-.- ..
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 5556668999999999999999998744 44444443211000 01
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.....+.+..+.+..+.....|++||-+..+.... +..-...++..+..+...+. + || .|-+|..+++
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-v-Ii-lTvhp~~l~e 172 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-V-II-LTVHPSALDE 172 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-E-EE-EEeChhhcCH
Confidence 12244566677777777777899999998886542 11122334444444443443 3 33 4556788998
Q ss_pred HHHhhcc
Q 011400 361 AMLRRLE 367 (487)
Q Consensus 361 aL~rRf~ 367 (487)
++.-|+.
T Consensus 173 ~~~~rir 179 (235)
T COG2874 173 DVLTRIR 179 (235)
T ss_pred HHHHHHH
Confidence 8887663
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.002 Score=51.71 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHh
Q 011400 242 GILLFGPPGTGKT-MLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT-~LAraiA~el 264 (487)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666999999999 5666666655
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.016 Score=62.74 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------cc--------------CC
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------WR--------------GD 283 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~~--------------g~ 283 (487)
.++.+...+|+.||||+|||+|+-.++.+. |-+.++++..+-... +. ..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 345677789999999999999999998865 556666654332211 00 01
Q ss_pred cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 284 SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 284 se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
.+..+..+.+......|.+|+||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 145666777777888899999999998754
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0039 Score=67.40 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCee-EEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSV 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~g-vLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l 276 (487)
...++++++-.++..+.+..++.. +.| ++++||+|+||||+..++.+++. ..++.+-- .+.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 345678887777778888776632 234 78999999999999999888774 33444421 111
Q ss_pred hhhccCC------cHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 277 VSKWRGD------SEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 277 ~~~~~g~------se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.-...++ ...........+-...|++|++.|+.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11123345556667889999999994
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=61.92 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++|.||||+|||++++.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.037 Score=56.14 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 356789999999999999999998888444
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0011 Score=63.38 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
|++.||||+||||+|+.+|+.++...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766553
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0054 Score=55.70 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=44.8
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchh-------hccC----Cc-HHHHHHHHHHHHhcCCcE
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVS-------KWRG----DS-EKLIKVLFELARHHAPST 302 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~-------~~~g----~s-e~~l~~~f~~a~~~~p~I 302 (487)
+.+...+.|.||+|+|||+|+++++..+... -+.++...+.. ...+ -+ ....+..+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3566779999999999999999999876321 23333322110 0000 11 122223345555567899
Q ss_pred EEechhhh
Q 011400 303 IFLDEIDA 310 (487)
Q Consensus 303 L~IDEiD~ 310 (487)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999853
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0042 Score=63.64 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=45.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccchhh------ccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~-~~~l~~~------~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
..++|+.|++|+||||++++++..+ +..++.+- ..++... +.....-....++..+-.+.|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999999876 23344332 1222110 0011112355667777789999999999
Q ss_pred h
Q 011400 308 I 308 (487)
Q Consensus 308 i 308 (487)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0094 Score=55.72 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecccchhh----c---cC--------------
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASSVVSK----W---RG-------------- 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el-------------~~~~i~v~~~~l~~~----~---~g-------------- 282 (487)
+....-++|+||||+|||+++..++..+ +.++++++...-... + .+
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 3445568999999999999999998865 135666654322100 0 00
Q ss_pred ---------------CcHHHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 283 ---------------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ---------------~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
.....+..+.+.+.. ..|.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455555666 57899999999999875
|
|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0016 Score=61.62 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 269 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--~~~~i 269 (487)
+.-++++|+|||||||+++.+++.+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3568999999999999999999999 55443
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0062 Score=56.22 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
+++.||||+|||++++.++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6889999999999999998876 56677776553
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.035 Score=59.07 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---CCc-HHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---GDS-EKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g~s-e~~l~~~f~~ 294 (487)
+|.-+++.|++|+||||++..+|..+ |..+..+++...... +. +.. .......+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 46779999999999999988888764 456766666533211 00 111 2333455555
Q ss_pred HHhcCCcEEEechhhh
Q 011400 295 ARHHAPSTIFLDEIDA 310 (487)
Q Consensus 295 a~~~~p~IL~IDEiD~ 310 (487)
+....+.+|+||=.-.
T Consensus 178 ~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 178 AKENGFDVVIVDTAGR 193 (428)
T ss_pred HHhcCCCEEEEeCCCc
Confidence 6566667999987643
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0022 Score=66.49 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=63.17 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+++||||+|||++++.||..++...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998765553
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.001 Score=61.40 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++++|.|||||||+++.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998887765
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.0
Q ss_pred eeEEEEcCCCChHHH-HHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTM-LAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~-LAraiA~el 264 (487)
+.+++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.031 Score=59.57 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=47.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~ 293 (487)
.++.-+++.||+|+||||++..+|..+ |..+..+++...... +. + ...........
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346778999999999999888887755 556666665432211 10 1 12233344555
Q ss_pred HHHhcCCcEEEechhhhH
Q 011400 294 LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 294 ~a~~~~p~IL~IDEiD~L 311 (487)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666789999977443
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.01 Score=61.25 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=29.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++....-+.|+||||+|||+++..++... +...++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 345666668899999999999999987533 33456666543
|
|
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0077 Score=61.60 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh------C---CcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el------~---~~~i~v~~~~ 275 (487)
++.+..-+.++||||+|||+++..++... + ...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 35666778999999999999999987632 1 2567776654
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0024 Score=65.14 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+.+...|+|.|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 467788999999999999999999999999998543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0062 Score=66.72 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=40.5
Q ss_pred cccchHHHHHH---HHhhhhhhhhhhh------hcccCCC--ceeeeccCCCcccceeeeeecCccchHH
Q 011400 10 LDFDIRALTKC---LKEGIITSRFIIS------KFIIGPP--HAFFYSFGSPPFQFSLAIQLAGCCSVET 68 (487)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (487)
+..||+-+|.- +..|++-+=-.+. -...|++ +++.|+|+||.+-.-+++..++-||..+
T Consensus 154 i~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~ 223 (604)
T COG4178 154 IQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLT 223 (604)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHH
Confidence 34788877652 3345543332222 3346777 5688999999999998888888888876
|
|
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0013 Score=61.89 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.-+++.||||+||||+|+.+++.++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34569999999999999999999999865544
|
|
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0018 Score=63.70 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=30.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
+...++|.||||+||+|+++.||+.++.. .++..++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR 67 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLR 67 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHH
Confidence 34569999999999999999999999864 444455543
|
|
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.005 Score=58.45 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccchhhc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKW 280 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~~~~ 280 (487)
..|.-+++.|+||+|||+++..+..++ +..++.++..++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 456779999999999999999999998 7888999887776543
|
It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D. |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=60.70 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccchhhcc------C--------CcHHHHHHHHHHHHhcCC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHAP 300 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~~~~l~~~~~------g--------~se~~l~~~f~~a~~~~p 300 (487)
+-+..-+||-|.||.|||||.-.++..+ ..++.+|++.+-..... | -.+-.+..+...+...+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4556678999999999999988888876 23789998766443211 1 135567788888889999
Q ss_pred cEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 301 STIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
.+++||-|..+....-++ ...-..-+.....|...-. .++-.+++++-.
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK---~~~i~~fiVGHV 219 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK---TKNIAIFIVGHV 219 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH---HcCCeEEEEEEE
Confidence 999999999998764222 2222223444455544432 333334454443
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.02 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=22.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~ 270 (487)
+.+|+++|.|||++|-++|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999999998765 444443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.023 Score=55.75 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.++.+..-++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 345677789999999999999998887755 6666666543
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0085 Score=61.02 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=46.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccchhh---c---------cCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK---W---------RGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~-~~~l~~~---~---------~g~se~~l~~~f~~a~~~~p~I 302 (487)
....++++.||+|+||||++++++..+. ...+.+. ..++... . .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 4557899999999999999999998773 2222221 1111100 0 0111223455677777789999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0048 Score=55.56 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhhccC-CcH-HHHHHHHHHHHhcCCcEEEechhhh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRG-DSE-KLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~~~g-~se-~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
+.+...+.|.||+|+|||+|++.++..... --+.++..... .|.. -+. ..-+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456677999999999999999999986521 11122111000 0100 111 2223344556667889999999753
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0049 Score=62.10 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=27.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-+++.|+|||||||+|+.+++.+. .++.++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4588999999999999999999983 3344454444
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0028 Score=49.68 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC-KTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el-~~~~i~v 271 (487)
+.+.|+||+|||++++.+++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2444444
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0025 Score=60.71 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el 264 (487)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
|
|
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0092 Score=61.24 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.|+|+||||+|||++++.|+..++...+. ..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec--ccHHH
Confidence 48999999999999999999999875444 44544
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0066 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+.+..-+.|.||.|+|||||.+.++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 355667899999999999999999743
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0057 Score=62.65 Aligned_cols=71 Identities=23% Similarity=0.433 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccchh------hccCCcHHHHHHHHHHHHhcCCcEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLD 306 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~-~~~l~~------~~~g~se~~l~~~f~~a~~~~p~IL~ID 306 (487)
...++++.|++|+|||+++++++.+. ...++.+. ..++.- .+.....-....++..+-.+.|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 44689999999999999999999874 12333322 112210 0111112235667778888999999999
Q ss_pred hhh
Q 011400 307 EID 309 (487)
Q Consensus 307 EiD 309 (487)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 993
|
|
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.037 Score=50.99 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred EcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 246 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 246 ~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
.+.+||||||++.+|++-++- +-.+.-.++.++ ...+.++.+.+........++|+|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 478999999999999998873 344444555443 345566666666644455689998655443322
Q ss_pred HHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHH--------HhhccccccC--CCCCHHHHHHHHHHhCCCCC
Q 011400 326 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM--------LRRLEKRILV--PLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 326 ~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL--------~rRf~~~i~~--~~Pd~eeR~~IL~~~l~~~~ 392 (487)
+++.+.+-..-.........+-+|+-.-..+...+.+ +.|=+.+-.+ ...+...-..|++.++++..
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2233322222222222223455555553333322223 2344444444 33456777778888775543
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0021 Score=75.11 Aligned_cols=141 Identities=20% Similarity=0.243 Sum_probs=81.6
Q ss_pred CCCCeeEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhc---------------CC
Q 011400 237 LSPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH---------------AP 300 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~L-AraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~---------------~p 300 (487)
+...++++++||||+|||+| .-++-+++-..++.++.+.-. .++..+.. ++.-..+ ..
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 46668999999999999995 567777777777777755432 12222222 2221111 11
Q ss_pred cEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEeCCCCcc-----cHHHHhhcc
Q 011400 301 STIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWEL-----DAAMLRRLE 367 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatTn~p~~L-----d~aL~rRf~ 367 (487)
.|||.|||+ |...+.-. +..--..+.+. .-+|+.. .-.++++.+++|.+.+. ...+.||-
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~-----e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~- 1637 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPPTVIVFLRPLV-----ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP- 1637 (3164)
T ss_pred eEEEeeccC-CccccccCCCceEEeeHHHH-----HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-
Confidence 399999998 43322111 10000111111 1122221 22458889999988653 34555543
Q ss_pred ccccCCCCCHHHHHHHHHHhCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
..+++..|.......|.+.++..
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHH
Confidence 44778899998888888877643
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=53.90 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
-+|.||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0092 Score=55.47 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566779999999999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0069 Score=63.46 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+...++|.||||+|||++++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4556699999999999999999999863
|
Members of this family differ in the specificity of RNA binding. |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0054 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l~~ 278 (487)
..++++++-.+...+.+.+.+.. +..-+|+.||+|+||||+..++..+++ ..++.+-- .+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 45678888777778888877633 234588999999999999988887774 33443321 11111
Q ss_pred hc-----cC-CcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 279 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 279 ~~-----~g-~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.. ++ .........+..+-...|++|+|.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 11 111234455666677889999999994
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0015 Score=58.98 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=26.0
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 245 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 245 L~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
|.||||+|||++|+.||++++. ..++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHH
Confidence 5799999999999999999976 4555556544
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.01 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3566779999999999999999999975
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.014 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++..++.||.|+|||++.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999986543
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=60.76 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh---------hcc---------------C
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS---------KWR---------------G 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~---------~~~---------------g 282 (487)
++.+..-+.++|+||+|||+++..+|-.. +...++++...-.. .+. -
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34556668899999999999999887432 23577777654110 000 0
Q ss_pred CcHHH---HHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 283 DSEKL---IKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ~se~~---l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
..+.. +..+........+.+|+||-+-.+...
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRT 233 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHH
Confidence 01111 222222234457889999999988754
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0022 Score=57.17 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.+..-++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455678999999999999999999999864
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0078 Score=68.25 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+-++|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997755
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.003 Score=63.24 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=46.8
Q ss_pred CCee-EEEEcCCCChHHHHHHHHHHHhCC----cEEEEe---------cccch-hhccCCcHHHHHHHHHHHHhcCCcEE
Q 011400 239 PWKG-ILLFGPPGTGKTMLAKAVATECKT----TFFNIS---------ASSVV-SKWRGDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 239 ~~~g-vLL~GppGtGKT~LAraiA~el~~----~~i~v~---------~~~l~-~~~~g~se~~l~~~f~~a~~~~p~IL 303 (487)
.++| ||++||.|+||||...++-.+++. +++.+- -..+. ..-+|.-.......++.|-...|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3445 788999999999999999988853 333331 11111 12334444445556667777889999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++-|+-
T Consensus 203 lvGEmR 208 (353)
T COG2805 203 LVGEMR 208 (353)
T ss_pred EEeccc
Confidence 999984
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0051 Score=63.56 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=47.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-ccchhh--------c----cCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVSK--------W----RGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~-~~l~~~--------~----~g~se~~l~~~f~~a~~~~p~I 302 (487)
....++++.||+|+||||++++++..+.. .++.+.- .++.-. + .+...-....++..+..+.|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34578999999999999999999998732 3333211 111100 0 0111223456777778889999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
|
|
| >PRK04182 cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0021 Score=59.18 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|+|.|+||||||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
|
|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=54.94 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
.|+|+.|++|+|||++++.++..+ ...++.++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999988766 3456666543
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.083 Score=57.40 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.....+.|.||+|+||||++..||..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999998764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=65.72 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++|...+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6888899999999999999999997744
|
|
| >COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0023 Score=64.70 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=34.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
++-++|.||+++|||-+|-.+|++++.++++++...+..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr 41 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYR 41 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcC
Confidence 356899999999999999999999999999998765543
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0023 Score=58.50 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77766
|
|
| >PRK01184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0023 Score=59.71 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
-|+|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788888777554
|
|
| >COG1855 ATPase (PilT family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0025 Score=66.75 Aligned_cols=44 Identities=34% Similarity=0.471 Sum_probs=36.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++|..-.+.++++|.+- ..|+|+.||||.||||+|+++|.-+
T Consensus 244 ~~ledY~L~dkl~eRL~er-----------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER-----------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred echhhcCCCHHHHHHHHhh-----------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 3467777777788888763 3689999999999999999999966
|
|
| >TIGR02173 cyt_kin_arch cytidylate kinase, putative | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0025 Score=58.33 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
|.++|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999886553
|
Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. |
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0075 Score=61.99 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=44.4
Q ss_pred CC-cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-CcEEEE
Q 011400 206 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNI 271 (487)
Q Consensus 206 ~~-di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-~~~i~v 271 (487)
|+ ++.|+++++.+|.+.+...-.. +....+-++|.||+|+|||+|++.+-+-+. .+++.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 44 8999999999999977443221 123345688999999999999999988773 344444
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0054 Score=61.31 Aligned_cols=70 Identities=26% Similarity=0.278 Sum_probs=38.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---hc-cCCcHHHHHHHHH----HHHhcCCcEEEechhhhH
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKVLFE----LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---~~-~g~se~~l~~~f~----~a~~~~p~IL~IDEiD~L 311 (487)
|+|+|-||+|||++|+.|+..+ +..++.++...+.- .| ....++.++..+. .+-.. ..|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999999976 56777777544431 12 1234555554333 33223 369999998776
Q ss_pred Hh
Q 011400 312 IS 313 (487)
Q Consensus 312 ~~ 313 (487)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0073 Score=66.64 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cch--
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVV-- 277 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~-~l~-- 277 (487)
.++++++-.+...+.+.+++.. +...||++||+|+||||+..++.++++ ..++.+--. +..
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 4567777777777777776633 223478999999999999998888774 234433211 111
Q ss_pred ---hhccC-CcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 278 ---SKWRG-DSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 278 ---~~~~g-~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...+. .........+..+-...|.+|++.|+.
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 00001 111224455666777899999999994
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=53.55 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||.|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455678999999999999999999865
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.021 Score=61.87 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=51.0
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccchhh--------------cc--------------
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSK--------------WR-------------- 281 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~e----l~~~~i~v~~~~l~~~--------------~~-------------- 281 (487)
..++++.+.+|+.||||||||++|..++.+ .|-+.++++..+-... +.
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 344677788999999999999999998543 2566666654321110 00
Q ss_pred --------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 282 --------GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 282 --------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
-.....+..+........+..|+||=+..+..
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~ 134 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ 134 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh
Confidence 01123444555566666778999997766643
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0032 Score=58.20 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK-TTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~-~~~i~v~ 272 (487)
.-|.+.|+||+||||+|+.|+..++ ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477899999999999999999985 4444444
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0041 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+++-++|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998875
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0097 Score=67.72 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+-++|.|+||||||++++++...+ |..++.+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap 404 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL 404 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 457899999999999999997654 555555533
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0024 Score=67.33 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-++|.||+|+|||+++..||.+++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765443
|
|
| >PRK14730 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.013 Score=55.70 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
-+.++|++|+|||++++.+++.+|.+++. +..+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHH
Confidence 48899999999999999999988887764 44443
|
|
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0028 Score=63.83 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+++.||+|+|||++|..+|.+++..+++++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999998888776444
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.037 Score=60.25 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh--------------cc------------C---
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------WR------------G--- 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~--------------~~------------g--- 282 (487)
++++..-+|++|+||+|||+++..++.+. |-+.++++..+-... +. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 34567789999999999999999886543 556666654332110 00 0
Q ss_pred -------CcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 283 -------DSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 283 -------~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+..+..+.+......|..++||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 1122344455556667889999999988754
|
|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0039 Score=57.78 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-++|.|+||+||||+++.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999999999999885
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.032 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.028 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK14526 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0034 Score=60.46 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||||+++.+|+.++.+.+ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 4889999999999999999999886554 444443
|
|
| >KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.037 Score=57.59 Aligned_cols=116 Identities=11% Similarity=0.015 Sum_probs=60.5
Q ss_pred CcEEEechhhhHHh----hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe--CCCC--------------ccc
Q 011400 300 PSTIFLDEIDAIIS----QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT--NLPW--------------ELD 359 (487)
Q Consensus 300 p~IL~IDEiD~L~~----~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT--n~p~--------------~Ld 359 (487)
|.++.||++.++.. .+.+...-.-..-.+...+...+.+-...+ .++.++. .-+. .++
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g--~vi~a~s~~~~~~a~~h~gv~~y~pr~llg 393 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFG--SVIMAISGVTTPSAFGHLGVAPYVPRKLLG 393 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccc--eEEEEecccccchhccccccccCCchHhcC
Confidence 56888999999987 322211111122344444555555443333 2233333 1111 122
Q ss_pred HHHHh---hccccccCCCCCHHHHHHHHHHhCCCCCCCC----CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 360 AAMLR---RLEKRILVPLPDTEARRAMFESLLPSQTGEE----SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 360 ~aL~r---Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~----~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
+...+ -| ..|+++.++.+|-..++..++...-... +..++++--.+ +.+|+.++.+|.
T Consensus 394 ~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 394 EEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 22222 34 3377888999999999998875543321 22334333333 667777776664
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.028 Score=63.66 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~e---l~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
++.+.+-++++||||||||+|+..++.. .|...++++..+-... .....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 3566677899999999999999765543 3566677765442210 01112333333333344
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....-+.|.||+|+|||||.|++-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4455689999999999999999965
|
|
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0069 Score=62.19 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=30.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..++|.|+||+|||||++.++..++.+++.-.+.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 469999999999999999999999988865554433
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0075 Score=63.63 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.|.|.|++|||||||+++||..+|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3579999999999999999999999877543
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=55.09 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566779999999999999999999865
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0035 Score=58.19 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.005 Score=56.43 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
.-|.|+|.||+|||+||+++.+.+ +.+.+.+++..+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 458899999999999999999977 78888888766643
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.024 Score=56.28 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh---------hccCC---------------c
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS---------KWRGD---------------S 284 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~---------~~~g~---------------s 284 (487)
....-.=|+||||+|||.|+-.+|-.. +...++++...-.+ .+.-. .
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCH
Confidence 333335599999999999999887654 34577777543211 11100 0
Q ss_pred H---HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 285 E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 285 e---~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+ ..+..+.......+..+|+||-+-.++...-.+..+.......+..++..+..+....+ +.||.|
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 1 11222222223345679999999999865322222222334556666666665544333 444434
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.035 Score=65.43 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=48.9
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
-||+|||+..|..... +.+...+..... ..+.-.|.+|.+|.+|. .|...++.-|..+|.|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988764311 122222222221 12334577888999986 5777788888888999888888
Q ss_pred HHHHHHHH
Q 011400 379 ARRAMFES 386 (487)
Q Consensus 379 eR~~IL~~ 386 (487)
+-+.||-.
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 87777644
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..+++.||.|||||++.++|...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 456799999999999999999988773
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0038 Score=59.51 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
.....++|.|+-|+|||++.+.|+.+. +.-+.... ........+ .. .-|+.+||++.+...
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~------~~kd~~~~l----~~--~~iveldEl~~~~k~--- 110 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF------DDKDFLEQL----QG--KWIVELDELDGLSKK--- 110 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC------CCcHHHHHH----HH--hHheeHHHHhhcchh---
Confidence 344568899999999999999997662 21111111 011111111 11 148999999887522
Q ss_pred cchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCCccc-HHHHhhc
Q 011400 318 ARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPWELD-AAMLRRL 366 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~~Ld-~aL~rRf 366 (487)
+ ...+++-+-...+.+. ...+...+|+|||..+-|. +.=-|||
T Consensus 111 ---~---~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf 162 (198)
T PF05272_consen 111 ---D---VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF 162 (198)
T ss_pred ---h---HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence 1 1233333322222221 1224466789999876443 3344687
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0087 Score=57.83 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
++.+...+++.||||+|||+++..++.+. +.+.+.++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45677789999999999999999877543 56677776543
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.12 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.-++|.||+|+||||++..||..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34568899999999999999999866
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0072 Score=59.83 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
..++..+.+|++|+||||||+++..++.+. |.+.++++..+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 345667789999999999999999998765 66777776543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.028 Score=51.79 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566779999999999999999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0069 Score=56.03 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++.-+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 44568999999999999999999987 4445556543
|
|
| >PLN02165 adenylate isopentenyltransferase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0035 Score=64.15 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
+..++|.||+|+|||+|+..||..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3468999999999999999999999877666543
|
|
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0042 Score=63.24 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-+++.||+|+|||++|..+|++++..++..+.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468999999999999999999999988777665433
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0056 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||||+++.|+..++.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4889999999999999999999987654 334443
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0049 Score=57.81 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=24.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
..++|.||+|+||||+++.|+...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998776543
|
|
| >PRK12339 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.006 Score=58.11 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+.-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 487 | ||||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 2e-74 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 4e-73 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 1e-72 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 2e-72 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 4e-70 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 5e-70 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 6e-62 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 3e-61 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 9e-58 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 4e-41 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 4e-41 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 6e-41 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 2e-40 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-37 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 2e-37 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-37 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-37 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-37 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 4e-36 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 1e-35 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-35 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 2e-34 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-34 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 4e-34 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 9e-34 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 1e-33 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 3e-32 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 6e-31 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 4e-30 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-27 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-27 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 3e-27 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-27 | ||
| 3mhv_C | 117 | Crystal Structure Of Vps4 And Vta1 Length = 117 | 1e-06 | ||
| 1ksf_X | 758 | Crystal Structure Of Clpa, An Hsp100 Chaperone And | 7e-06 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 6e-04 | ||
| 1jbk_A | 195 | Crystal Structure Of The First Nucelotide Binding D | 7e-04 | ||
| 3qmz_A | 2486 | Crystal Structure Of The Cytoplasmic Dynein Heavy C | 8e-04 | ||
| 4ai6_A | 2695 | Dynein Motor Domain - Adp Complex Length = 2695 | 8e-04 |
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1 Length = 117 | Back alignment and structure |
|
| >pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of Clpb Length = 195 | Back alignment and structure |
|
| >pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 | Back alignment and structure |
|
| >pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-152
Identities = 135/305 (44%), Positives = 190/305 (62%), Gaps = 12/305 (3%)
Query: 187 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 246
+ L + + +I+ G V+W I G + AK+ L+E V++P P+ FTGL +P KG+LLF
Sbjct: 1 QKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLF 60
Query: 247 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 306
GPPG GKT+LA+AVATEC TF NISA+S+ SK+ GD EKL++ LF +ARH PS IF+D
Sbjct: 61 GPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120
Query: 307 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFVLAATNLPWELDAAMLR 364
E+D+++S+R SEHEASRRLKTE L++ DGL + + + VLAATN P ELD A LR
Sbjct: 121 EVDSLLSERSS--SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178
Query: 365 RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 423
R KR+ V LPD + R + LL Q L + T+GYSGSD+ ++K+AA+
Sbjct: 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238
Query: 424 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 482
+P+R L E ++ + I +D +LK R S A + YEK++ DYG
Sbjct: 239 EPIRELN------VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292
Query: 483 SEILQ 487
++
Sbjct: 293 DITIK 297
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 432 bits (1113), Expect = e-151
Identities = 141/317 (44%), Positives = 191/317 (60%), Gaps = 29/317 (9%)
Query: 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 254
I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 255 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314
LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 315 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 374
RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 126 RGE--GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183
Query: 375 PDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433
PD AR MFE + Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 434 EGRQEVAPDDELPQIG-------------------------PIRPEDVEIALKNTRPS-A 467
+ DDE ++ + +D A+K+TRP+
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 468 HLHAHRYEKFNADYGSE 484
+ E+F D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 428 bits (1103), Expect = e-149
Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 36/322 (11%)
Query: 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 256
I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+GILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 257 AKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315
AKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375
E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 376 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434
+ AR AMF+ L + + + L +T+GYSG+DI ++ ++A MQP+R++
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 435 GRQEVAPDDELPQIG-------------------------------PIRPEDVEIALKNT 463
++ P P + D+ +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299
Query: 464 RPSAHLH-AHRYEKFNADYGSE 484
+P+ + H + +KF D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 429 bits (1104), Expect = e-148
Identities = 131/314 (41%), Positives = 191/314 (60%), Gaps = 12/314 (3%)
Query: 174 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 233
+K L NF + ++ LA + +I+ VK++ I G + AK+ L+E V++P P+ F
Sbjct: 83 KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 293
TGL +P +G+LLFGPPG GKTMLAKAVA E TFFNISA+S+ SK+ G+ EKL++ LF
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 294 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 352
+AR PS IF+D++D+++ +R E EH+ASRRLKTE LI+ DG+ + D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 353 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSG 411
N P ELD A+LRR KR+ V LP+ E R + ++LL Q + L T+GYSG
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319
Query: 412 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 471
SD+ ++K+AA+ P+R L E + ++ IR D +LK + S
Sbjct: 320 SDLTALAKDAALGPIRELK------PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQT 373
Query: 472 -HRYEKFNADYGSE 484
Y ++N D+G
Sbjct: 374 LEAYIRWNKDFGDT 387
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 425 bits (1095), Expect = e-148
Identities = 126/298 (42%), Positives = 188/298 (63%), Gaps = 11/298 (3%)
Query: 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 248
+ E + +I+ P V WE I G+E AK +KE VV P+ P FTGL P KGILLFGP
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125
Query: 249 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 308
PGTGKT++ K +A++ TFF+ISASS+ SKW G+ EK+++ LF +AR P+ IF+DEI
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185
Query: 309 DAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLRRLE 367
D+++SQRG+ EHE+SRR+KTE L+Q+DG T S++ + V+ ATN P E+D A RRL
Sbjct: 186 DSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243
Query: 368 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426
KR+ +PLP+ AR+ + +L+ + S + +V++++ +SG+D+ + +EA++ P+
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 483
R L + PD Q+ PI D E A + RPS + YE +N +G
Sbjct: 304 RSLQT--ADIATITPD----QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-144
Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 29/342 (8%)
Query: 170 NERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY 229
N+++ + + + + L +L I+ P+VKWE + GLE AK LKEAV++P+K+
Sbjct: 14 NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
Query: 230 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIK 289
P F G P GILL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 290 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349
LF +AR + PS IF+D++DA+ RGE E EASRR+KTELL+QM+G+ + V VL
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRGE--GESEASRRIKTELLVQMNGVGNDSQGVLVL 191
Query: 350 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408
ATN+PW+LD+A+ RR E+RI +PLPD AR MFE + + Y L TEG
Sbjct: 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251
Query: 409 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------- 449
YSGSDI +V K+A MQP+R++ + DDE ++
Sbjct: 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEA 311
Query: 450 ------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 484
+ +D A+K+TRP+ + E+F D+G E
Sbjct: 312 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-140
Identities = 146/413 (35%), Positives = 211/413 (51%), Gaps = 36/413 (8%)
Query: 106 TFQFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQYRTQGSGSTCLNGVL 165
+Q + K E ++ + Y + + +
Sbjct: 33 LYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQS 92
Query: 166 ANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVM 225
V + D E + L L I+ P+VKW + GLE AK LKEAV++
Sbjct: 93 GPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVIL 152
Query: 226 PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSVVSKWRGDS 284
PIK+P FTG +PW+GILLFGPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+S
Sbjct: 153 PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212
Query: 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344
EKL+K LF+LAR + PS IF+DEID++ R E +E EA+RR+KTE L+QM G+ ++
Sbjct: 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDND 270
Query: 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-TGEESLPYDLLV 403
+ VL ATN+PW LD+A+ RR EKRI +PLP+ AR AMF L S + L
Sbjct: 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG 330
Query: 404 ERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG-------------- 449
+T+GYSG+DI ++ ++A MQP+R++ ++ P P
Sbjct: 331 RKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPG 390
Query: 450 -----------------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 484
+ D+ +L +T+P+ + +KF D+G E
Sbjct: 391 AIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 1e-85
Identities = 94/283 (33%), Positives = 157/283 (55%), Gaps = 12/283 (4%)
Query: 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 253
R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 254 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313
T+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 314 QRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 370
RG + A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 371 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430
+PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A +R +
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241
Query: 431 -------VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466
+ +E + IR + E A++ R S
Sbjct: 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 5e-83
Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 18/274 (6%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
P+V W I LE+ + L A++ P++ P F L L G+LL GPPG GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A E F ++ +++ + G+SE+ ++ +F+ A++ AP IF DE+DA+ +R +
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--R 122
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 378
E AS R+ +LL +MDGL + VF++AATN P +D A+LR RL+K + V LP
Sbjct: 123 ETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 379 ARRAMFESLLPSQTG---EESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433
R A+ +++ + T + + + + R + Y+G+D+ + +EA++ LR+ M
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM--- 238
Query: 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467
+ + E A K R S
Sbjct: 239 ----ARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 2e-81
Identities = 92/276 (33%), Positives = 152/276 (55%), Gaps = 7/276 (2%)
Query: 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 253
D +V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 254 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313
T++A+AVA E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 371
+R + E E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ +
Sbjct: 312 KREKTHGEVE--RRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 372 VPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 431
+ +PD R + + + + + + + T G+ G+D+ + EAA+Q +R+ M
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467
L++ E + + + + +D AL + PSA
Sbjct: 429 LIDLEDETIDAEVMNSLA-VTMDDFRWALSQSNPSA 463
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 3e-78
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 259
P+V++E I GLE + ++E V +P+K+P+ F + + P KGILL+GPPGTGKT+LAKA
Sbjct: 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VATE TF + S +V K+ G+ L+K +F+LA+ APS IF+DEIDAI ++R +A
Sbjct: 71 VATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130
Query: 320 SEHEA-SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 376
+ + +R +LL +MDG + V ++ ATN P LD A+LR R ++ I VP PD
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436
+ R + + E + + + + TEG G++++ + EA M +R R
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE------LR 243
Query: 437 QEVAPDD 443
V DD
Sbjct: 244 DYVTMDD 250
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 7e-55
Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 29/272 (10%)
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268
+ G A + + VV K + P + ++G G GK+ + V +
Sbjct: 6 LDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGINP 64
Query: 269 FNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA 324
+SA + S G+ KLI+ + A R +F++++DA + G
Sbjct: 65 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVN 124
Query: 325 SR---RLKTELL-----IQMDGLTQSDEL--VFVLAATNLPWELDAAMLR--RLEKRILV 372
++ + +Q+ G+ E V ++ N L A ++R R+EK
Sbjct: 125 NQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184
Query: 373 PLPDTEAR--RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430
P + +F + +++P + +V+ + + G I A +
Sbjct: 185 PTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVR 236
Query: 431 --VLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460
V G +++ GP E ++ +
Sbjct: 237 KWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTI 268
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-45
Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAKAVA 261
V ++ + G+ AK ++E V +K P+ F L + P KG LL GPPG GKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60
Query: 262 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321
TE + F ++ + V G ++ LF+ AR AP +++DEIDA+ +R S
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 322 HEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 377
+ +T +LL++MDG+ + + V VLA+TN LD A++R RL++ + + LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
Query: 378 EARRAMFE-SLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
+ RR +FE L + + + L E T G+SG+DI + EAA+ R
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-45
Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 8/234 (3%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 258
P+V+++ + G E AK + E +V +KYP+ + L + P KG+LL GPPGTGKT+LAK
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAK 62
Query: 259 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 318
AVA E FF++ SS + + G ++ LFE A+ APS IF+DEIDAI R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 319 RSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 374
R +T +LL +MDG + V VLAATN P LD A++R R ++++LV
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 375 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
PD R + + + + + + T G +G+D+ + EAA+ R
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-43
Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 8/233 (3%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 258
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 259 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 318
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 319 RS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 375
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
D + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTG 252
++ +P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG G
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVG 61
Query: 253 KTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 312
KT LA+AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 313 SQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKR 369
+RG ++ + +LL++MDG + D + V+AATN P LD A+LR R +++
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 370 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
I + PD + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 8/234 (3%)
Query: 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 257
+ + G + AK + E +V ++ P F L P KG+L+ GPPGTGKT+LA
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLA 62
Query: 258 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317
KA+A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 63 KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122
Query: 318 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 374
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V L
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 375 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428
PD R + + + + ++ T G+SG+D+ + EAA+ R
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 15/249 (6%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 261
I + + + + ++ K +P +LL GPP +GKT LA +A
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR--TPLVSVLLEGPPHSGKTALAAKIA 85
Query: 262 TECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
E F I + + + ++ + +K +F+ A S + +D+I+ ++
Sbjct: 86 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-- 143
Query: 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEA 379
S + LL+ + + ++ T+ L ML I V P+
Sbjct: 144 -PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIAT 200
Query: 380 RRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAMQ--PLRRLMVLLE 434
+ E+L ++ + ++ +G G L+ E ++Q P R+ L
Sbjct: 201 GEQLLEALELLGNFKDK-ERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259
Query: 435 GRQEVAPDD 443
+E
Sbjct: 260 LLREEGASP 268
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 94/250 (37%), Positives = 133/250 (53%), Gaps = 40/250 (16%)
Query: 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 257
G+ V ++ + G E A LKE VV +K P F + + P KGILL GPPGTGKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 258 KAVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDA 310
+AVA E FF+IS S V E + V LF A+ HAP +F+DEIDA
Sbjct: 67 RAVAGEANVPFFHISGSDFV-------ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119
Query: 311 IISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDA 360
+ RG E R +T +LL++MDG S E + V+AATN P LD
Sbjct: 120 VGRHRGAGLGGGHDE---------REQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDP 169
Query: 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 418
A+LR R +K+I+V PD R+ + E ++ E + +++ +RT G+ G+D+ +
Sbjct: 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229
Query: 419 KEAAMQPLRR 428
EAA+ R
Sbjct: 230 NEAALLAARE 239
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 89/249 (35%), Positives = 128/249 (51%), Gaps = 40/249 (16%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 258
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 25 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 259 AVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDAI 311
AVA E + F S S V E + V LFE A+ HAP +F+DEIDA+
Sbjct: 83 AVAGEARVPFITASGSDFV-------EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135
Query: 312 ISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAA 361
+RG E R +T +LL++MDG + D + V+AATN P LD A
Sbjct: 136 GRKRGSGVGGGNDE---------REQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPA 185
Query: 362 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 419
+LR R +++I + PD + R + + E + LL +RT G+ G+D+ +
Sbjct: 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245
Query: 420 EAAMQPLRR 428
EAA+ R
Sbjct: 246 EAALLAARE 254
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-13
Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 51/306 (16%)
Query: 177 LLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236
L ++ + + + E L R++I GL+ K ++E + + + L
Sbjct: 13 LRAEYEGSGAKEVLEELDRELI------------GLKPVKDRIRETAAL-LLVERARQKL 59
Query: 237 ----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVSKWRGDSE 285
+P + G PGTGKT +A +A K +++ +V ++ G +
Sbjct: 60 GLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119
Query: 286 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345
K + + A +F+DE + E EA L + D+L
Sbjct: 120 PKTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM------ENNRDDL 170
Query: 346 VFVLAA----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 394
V +LA ++ + R+ I P E + +L Q
Sbjct: 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230
Query: 395 ESLPYDLLVERTEGYS-GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRP 453
Y L ++ IR A ++ RL L I
Sbjct: 231 ALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF---TASSGPLDARALST---IAE 284
Query: 454 EDVEIA 459
ED+ +
Sbjct: 285 EDIRAS 290
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 2e-13
Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 94/342 (27%)
Query: 165 LANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP-DVKWESIKGLENAKRLLKEAV 223
L + I ++P + E R + L D + +V ++ ++ L E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVS--RLQPYLKLRQALLE-- 146
Query: 224 VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW 280
L P K +L+ G G+GKT +A V K F I W
Sbjct: 147 -------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------W 186
Query: 281 -----RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL------K 329
E ++++L +L P+ + D + + S RRL +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 389
LL+ + + + +A L +IL+ T + + + L
Sbjct: 245 NCLLV-LLNV--QN-----------AKAWNAFNLS---CKILL----TTRFKQVTDFLSA 283
Query: 390 SQTGEESLPYDLLVERTEGYSGSDIR-LVSKEAAMQPLRRLMVLLEGRQEVAPDDELP-Q 447
+ T S L + + +++ L+ K +P +LP +
Sbjct: 284 ATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRP-----------------QDLPRE 321
Query: 448 IGPIRPEDVEI--ALKNTRPSAHLHAHRYEKFNADYGSEILQ 487
+ P + I + ++ N D + I++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIE 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 90/560 (16%), Positives = 155/560 (27%), Gaps = 183/560 (32%)
Query: 11 DFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETER 70
+FD + + K I++ I II
Sbjct: 32 NFDCKDVQDMPK-SILSKEEI--DHIIMSKD-------------------------AVSG 63
Query: 71 ERFFFFLIFILSAISLLLRLSNLSAMA-DEPMPTRWTFQFGRKKIKEPEKGEITERPVSD 129
F+ LL + + +E + + F K ++ + +T +
Sbjct: 64 TLRLFWT--------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 130 GSSLNSNGHVQNTSDMAV-----YEQYRTQ----------------GSGSTCLNGVLANV 168
L ++ V + V Y + R GSG T + L
Sbjct: 116 RDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVC 171
Query: 169 INERLQKPL--------LPNFDSAETR-ALAESLCRDI---------IRGSPDVKWESIK 210
++ ++Q + L N +S ET + + L I + ++ SI+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 211 GLENAKRLLKEAVVMPIKYPKYFTGLL------SPWKGILLFGPPGTGKTMLAKAVATEC 264
+RLLK Y LL + A C
Sbjct: 232 --AELRRLLKSK-----PYEN---CLLVLLNVQNAK---------------AWNAFNLSC 266
Query: 265 K---TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321
K TT V + I + H T+ DE+ +++ + + R +
Sbjct: 267 KILLTT----RFKQVTDFLSAATTTHISL------DHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 322 ---HEASRRLKTE-LLIQMDGLTQSDELVFVLAATNLPWE-LDAAMLRRLEKRILVPLPD 376
E L T + + + D L AT W+ ++ L + + L L
Sbjct: 317 DLPREV---LTTNPRRLSIIAESIRDGL-----ATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 377 TEARRAMFESL--------LPSQTGE----ESLPYD-----------LLVER-----TEG 408
E R+ MF+ L +P+ + + D LVE+ T
Sbjct: 369 AEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 409 YSGSDIRLVSKEAAMQPLRRLMV-LLEGRQEVAPDDELPQIGPIRPEDVEIA------LK 461
+ L K L R +V + DD +P D LK
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-----YLDQYFYSHIGHHLK 482
Query: 462 NTRPSAHLHAHRYEKFNADY 481
N H R F +
Sbjct: 483 NIE-----HPERMTLFRMVF 497
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 1e-10
Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 33/197 (16%)
Query: 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 268
G ENA+ V + IK K + +LL GPPGTGKT LA A+A E K F
Sbjct: 41 GQENAREACGVIVEL-IKSKKM------AGRAVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 269 FNISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEAR------- 319
+ S V S +E L++ R ++ E+ + E
Sbjct: 94 CPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKT 153
Query: 320 ----------SEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPWELDAAMLRR--- 365
++ +L + + ++ +++++ A +
Sbjct: 154 ISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEF 213
Query: 366 -LEKRILVPLPDTEARR 381
LE VPLP + +
Sbjct: 214 DLEAEEYVPLPKGDVHK 230
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAP 300
++L+GPPGTGKT LA+ +A ISA S V K I+ E AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---------KEIREAIERARQNRN 103
Query: 301 ---STI-FLDEI 308
TI F+DE+
Sbjct: 104 AGRRTILFVDEV 115
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 370 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429
P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-- 63
Query: 430 MVLLEGRQEVAPDD 443
E R V +D
Sbjct: 64 ----ERRVHVTQED 73
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-----SVVSKWRGDSEKLIKVLFELA 295
+ +L+GPPG GKT A VA E +AS ++++ ++ + V+
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 296 RHHAPST-------IFLDEIDAI 311
+ I +DE+D +
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGM 160
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-06
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435
D +R +F ++ E + + V R + SG+DI + +E+ M +R E
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR------EN 55
Query: 436 RQEVAPDD 443
R V D
Sbjct: 56 RYIVLAKD 63
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 50/233 (21%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTT-----------FFNISASSVVSKWRGDSEKLIKVL 291
L G GTGKT ++K + E + ++ V + L L
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 292 FELARHHA------------------PSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333
+ + I+LDE+D ++ +RG ++ R +
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167
Query: 334 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 393
I + N+ ++ +L L ++ D E + +
Sbjct: 168 I------------MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI 215
Query: 394 EESLPYD---LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 443
+ + + + + G D R A+ L R L G + +
Sbjct: 216 KGTYDDEILSYIAAISAKEHG-DAR-----KAVNLLFRAAQLASGGGIIRKEH 262
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 373 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432
P P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR----- 55
Query: 433 LEGRQEVAPDD 443
E R V +D
Sbjct: 56 -ERRVHVTQED 65
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 261
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 26 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALA 66
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 399 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 443
D L+ R + SG+ I + +EA ++ +R + R + D
Sbjct: 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVR------KNRYVILQSD 60
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 241 KGILLFGPPGTGKTMLAKAVATEC------KTTFFNIS 272
KG+ G PG GKT LA A + FF+
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 100.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 100.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.98 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.97 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.97 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.96 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.95 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.93 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.85 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.85 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.84 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.83 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.83 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.82 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.79 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.77 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.76 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.76 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.75 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.75 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.74 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.74 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.73 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.73 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.73 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.73 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.73 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.72 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.72 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.71 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.7 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.69 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.68 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.68 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.68 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.68 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.68 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.67 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.66 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.66 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.66 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.65 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.65 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.65 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.64 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.63 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.63 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.63 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.61 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.59 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.55 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.55 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.54 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.54 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.53 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.5 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.48 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.45 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.4 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.4 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.32 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.28 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.27 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.25 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.18 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.16 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.13 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.06 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.03 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.02 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.98 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.95 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.9 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.85 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.8 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 98.79 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.79 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.74 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.63 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.57 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.55 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.54 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.27 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.2 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.17 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.16 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.05 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.02 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.0 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.92 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 97.8 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.72 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.72 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.72 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.71 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.69 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.69 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.65 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.64 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.63 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.6 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.55 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.53 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.5 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.48 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.44 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.43 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.4 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.38 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.38 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.36 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.35 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.34 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.32 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.32 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.3 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.29 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.26 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.22 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.22 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.18 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.17 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.15 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.14 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.12 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.11 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 97.1 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.1 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.1 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.09 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.08 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.08 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.08 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.07 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.05 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 97.05 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.05 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.05 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.02 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.02 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.02 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.01 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.01 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.98 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.98 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.96 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.94 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.93 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.92 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.92 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.92 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.91 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.91 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.91 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.9 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.9 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.89 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.88 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.88 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.87 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.86 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.8 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.8 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.8 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.77 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.77 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.75 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.74 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.72 | |
| 2dl1_A | 116 | Spartin; SPG20, MIT, structural genomics, NPPSFA, | 96.72 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.7 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.69 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.68 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.68 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.67 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.65 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.65 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.64 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 96.63 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.61 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.59 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.57 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.57 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.56 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.55 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.54 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.49 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.44 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.42 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.41 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.37 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.34 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.34 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.32 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.32 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.28 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.26 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 96.26 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.24 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.23 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.23 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.21 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.21 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 96.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.16 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.14 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.12 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.09 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.07 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.07 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.06 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.05 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.01 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.0 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.0 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.98 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.92 | |
| 3eab_A | 89 | Spastin; spastin, MIT, ESCRT, alternative splicing | 95.92 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.86 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 95.85 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.83 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.83 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.82 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.81 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.81 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.81 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.78 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.78 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.76 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 95.75 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 95.74 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.71 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.7 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.68 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 95.68 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.68 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.68 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.66 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 95.65 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.64 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.63 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.63 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.59 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.51 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.46 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 95.37 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.36 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.29 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.27 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.19 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 95.18 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.13 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.12 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.09 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.08 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.08 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.03 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.03 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.01 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 94.99 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 94.97 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 94.95 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 94.9 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.87 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 94.86 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.82 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 94.81 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.81 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 94.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.79 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 94.78 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.76 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 94.75 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.72 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 94.65 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 94.61 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 94.54 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.48 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.41 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.41 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.38 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.32 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 94.24 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 94.2 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 94.19 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.14 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.14 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 94.1 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.09 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 94.0 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 94.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 93.99 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 93.92 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.88 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 93.87 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.83 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 93.78 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 93.71 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.59 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.57 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 93.52 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.51 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 93.49 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 93.48 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.43 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.4 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 93.35 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.33 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.33 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 93.3 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.27 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 93.27 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.26 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 93.24 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 93.21 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 93.14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 93.08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 93.06 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.03 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 93.02 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.0 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 92.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 92.91 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 92.9 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 92.89 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 92.89 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.88 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 92.84 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 92.78 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 92.77 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 92.76 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 92.76 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 92.72 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 92.71 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 92.71 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 92.7 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 92.67 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.65 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 92.64 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 92.63 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 92.63 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 92.61 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 92.61 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 92.58 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 92.57 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 92.57 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 92.57 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.56 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 92.56 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 92.53 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 92.51 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 92.48 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.46 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 92.45 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 92.43 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 92.42 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 92.42 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 92.4 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 92.38 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 92.37 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 92.37 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 92.36 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 92.34 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 92.33 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.25 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 92.23 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 92.23 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.23 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 92.23 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 92.17 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 92.16 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 92.16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 92.15 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 92.14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 92.12 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 92.1 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 92.1 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 92.04 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 92.04 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 92.01 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 91.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 91.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 91.95 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 91.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 91.84 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 91.78 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 91.77 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 91.76 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 91.72 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 91.67 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 91.66 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 91.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 91.64 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 91.57 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 91.56 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 91.56 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 91.56 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 91.55 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 91.54 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 91.5 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 91.49 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 91.48 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 91.47 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 91.47 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 91.42 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 91.4 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 91.37 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 91.35 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 91.35 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.34 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 91.34 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 91.32 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 91.29 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 91.28 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 91.25 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 91.19 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 91.19 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 91.17 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 91.16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 91.15 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 91.14 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 91.11 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 91.11 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 91.09 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 91.08 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 91.04 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 91.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 90.98 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 90.88 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 90.85 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 90.82 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 90.8 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 90.8 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 90.79 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 90.77 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 90.76 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 90.75 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 90.72 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 90.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 90.71 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 90.65 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 90.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 90.58 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 90.55 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 90.55 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 90.54 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 90.52 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 90.51 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 90.5 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 90.48 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 90.46 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 90.44 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 90.44 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 90.44 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 90.43 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 90.4 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 90.37 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 90.34 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 90.32 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 90.31 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 90.26 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 90.25 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 90.21 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 90.16 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 90.15 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 90.13 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 90.11 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 90.1 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 90.09 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 90.07 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 90.01 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=399.89 Aligned_cols=258 Identities=34% Similarity=0.549 Sum_probs=235.0
Q ss_pred HhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 193 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.+....+.|+++|+||+|++++|++|++.+.+|+.+|++|... +.+|+|+|||||||||||++|+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34566778899999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
+++++.++|+|++++.++.+|..|+..+||||||||+|+++++|.... ..+....+++++||..||++... ..|+||+
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIa 292 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIM 292 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEe
Confidence 999999999999999999999999999999999999999999876433 33445678899999999998654 4588999
Q ss_pred EeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011400 351 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 351 tTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
|||+|+.||+|++| ||+..|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|++.|+++
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999988888899999999999999999999999999999874
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 429 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 429 ~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
. ...||.+||..|++++.+...+
T Consensus 373 ~------------------~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 R------------------RIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp T------------------CSBCCHHHHHHHHHHHHHHHTC
T ss_pred C------------------CCCcCHHHHHHHHHHHhCcccc
Confidence 1 1358999999999998766544
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=392.81 Aligned_cols=262 Identities=33% Similarity=0.551 Sum_probs=230.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|.++|+||+|++++|++|++.+.+|+.+|++|..+ +.+++|||||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 446799999999999999999999999999999999875 7999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......++++++|..||+..... .|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence 9999999999999999999999999999999999998876432 344556778899999999886554 58899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.||+|++| ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999888888999999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh--hHHHHHHHH
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 478 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~--~~~~y~~~~ 478 (487)
...||.+||.+|++++.++... ...+|.+||
T Consensus 435 --------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1348999999999998765543 357788886
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=391.71 Aligned_cols=255 Identities=33% Similarity=0.556 Sum_probs=232.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...+.|.++|+||+|++++|+.|++.+.+|+.+|++|... +++++|||||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3456799999999999999999999999999999999765 889999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+.++|+|++++.++.+|..|+..+||||||||+|.+++.|..... ......++++.||..||++.... .|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCC
Confidence 999999999999999999999999999999999999998865433 23345678899999999987654 4789999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.||+|++| ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999988 99999999999999999999999988888888999999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
...|+.+||.+|+++++|+.+..
T Consensus 407 ---------------~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---------------QSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------CSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------CCCcCHHHHHHHHHHHhCCCCcC
Confidence 13589999999999999987754
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=388.85 Aligned_cols=254 Identities=33% Similarity=0.532 Sum_probs=231.4
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...+.|.++|+||+|++++|++|++.+.+|+.+|++|... +.+++|||||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 3457899999999999999999999999999999999865 789999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... ......+++++||..+|++.... .|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCC
Confidence 999999999999999999999999999999999999998854332 23345678889999999886554 4889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.||+|++| ||+..|+|++||.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999 99999999999999999999999999888888999999999999999999999999999998741
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
...||.+||.+|++++.|+..+
T Consensus 408 ---------------~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 ---------------RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp ---------------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred ---------------CCccCHHHHHHHHHHHhCCCCh
Confidence 1348999999999999887664
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=387.69 Aligned_cols=254 Identities=34% Similarity=0.582 Sum_probs=230.9
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
....+.|.++|+||+|++++|+.|++.+.+|+.+|++|... +.+++|||||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34556899999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
++.++|.|++++.++.+|..|+..+||||||||+|.++++|.... .......+++++||..||++.... .|+||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecC
Confidence 999999999999999999999999999999999999998875432 234456778899999999987654 477999999
Q ss_pred CCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 354 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 354 ~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
+|+.||+|++| ||+..|+|++|+.++|.+||+.++.+.....+.+++.+|+.|+||||+||.++|++|++.|+++-
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-- 406 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-- 406 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 69999999999999999999999998888888999999999999999999999999999998741
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
...|+.+||.+|++++.|+..
T Consensus 407 ----------------~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 407 ----------------RDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp ----------------CSSBCHHHHHHHHHHHHHTCC
T ss_pred ----------------CCCCCHHHHHHHHHHHHhccC
Confidence 134899999999999988755
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=420.94 Aligned_cols=289 Identities=34% Similarity=0.618 Sum_probs=198.8
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
++.....|.++|+|++|++++|+.|++.+.+|+.+++.|... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 344456788999999999999999999999999999999876 8899999999999999999999999999999999999
Q ss_pred ccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 274 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
+++.++|+|++++.++.+|..|+..+||||||||+|++++.|+.. ...+...++++++||.+||++.... .|+||+||
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~-~V~vi~aT 623 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGAT 623 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS-SEEEECC-
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC-CEEEEEeC
Confidence 999999999999999999999999999999999999999988643 3345567899999999999997654 58999999
Q ss_pred CCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 353 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 353 n~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+|+.||+|++| ||++.+++++|+.++|.+||+.++++.....+++++.||+.|+||||+||.++|++|++.|+|+.+
T Consensus 624 N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHH
T ss_pred CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998888889999999999999999999999999999999876
Q ss_pred HHhhchhc-------cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchh
Q 011400 431 VLLEGRQE-------VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSE 484 (487)
Q Consensus 431 ~~le~~~~-------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~ 484 (487)
........ ...........+|+++||++|+++++||++++ +..|++|.+.|++.
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 704 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp C-----------------------CCC----CCTTTC---------------CCCC------
T ss_pred HhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 43211100 00001111235699999999999999999975 79999998888753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=376.36 Aligned_cols=253 Identities=36% Similarity=0.594 Sum_probs=228.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|+++|+||+|++++|+.|++.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 456799999999999999999999999999999999875 8999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... ..+....+++++||..||++.... .|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 9999999999999999999999999999999999999875432 233456789999999999987654 48899999999
Q ss_pred CcccHHHHh--hccccccCC-CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 356 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~-~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
+.||+|++| ||+..|++| +|+.++|..||+.++.+.....+.+++.+|..|+||||+||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 999999999 999999996 89999999999999998888888999999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhc-cCCChhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAHL 469 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~-~~ps~~~ 469 (487)
...|+.+||.+|+.+ ++++.+.
T Consensus 399 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 399 ---------------RYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---------------CSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---------------CCCCCHHHHHHHHHHhhCccCCc
Confidence 134899999999976 4665543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=356.82 Aligned_cols=283 Identities=48% Similarity=0.834 Sum_probs=246.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~ 277 (487)
.+.|.++|+||+|++.+|+.|++.+.+|+.+++++.....+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457889999999999999999999999999999998777888999999999999999999999999 8999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
++|.|.+++.++.+|..++..+|+||||||+|.+.+.+... ......+++++|+..++++......++||++||.|+.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999999876543 3445678899999999998665677999999999999
Q ss_pred ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 358 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 358 Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+|++++|||+..+++++|+.++|.+|++.++...... .+.+++.+++.+.||+|+||..+|++|+..++++......-.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998776543 456688999999999999999999999999999876421100
Q ss_pred h--c------------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhch
Q 011400 437 Q--E------------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGS 483 (487)
Q Consensus 437 ~--~------------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~ 483 (487)
. . ..+.+. ....+||++||..|+++++||++.+ +..|++|+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 0 000000 0124799999999999999999974 7999999999998
Q ss_pred h
Q 011400 484 E 484 (487)
Q Consensus 484 ~ 484 (487)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=352.39 Aligned_cols=286 Identities=49% Similarity=0.793 Sum_probs=245.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.+....|+++|++|+|++.+|+.|++.+.+|+.+++++.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 45667899999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.|.|.+++.++.+|..++...|+||||||+|.+.+.+... ......++.+.++..+++.......++||++||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 23345778899999999886666779999999999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
+.+|+++++||+..+++++|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|+..++++..+...
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999876644 4456889999999999999999999999999999876421
Q ss_pred chhc--------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 011400 435 GRQE--------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 484 (487)
Q Consensus 435 ~~~~--------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 484 (487)
.... ..+.+ .....+||++||.+|++.++||++. +...|++|++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1100 00001 1123579999999999999999987 479999999999986
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=352.60 Aligned_cols=295 Identities=48% Similarity=0.789 Sum_probs=233.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 187 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
..+.+.+...+....|.++|++|+|++.+++.|.+.+.+++.+++++.....+++++||+||||||||++|+++|++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44455566667778899999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+++.++++++.+.+.|.+++.++.+|..++...|+||||||+|.+.+.+... .....+++.++|+..++++......+
T Consensus 111 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCe
Confidence 9999999999999999999999999999999999999999999998776543 34456788899999999886656679
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.|+.+++++++||+..+++++|+.++|.+||+.++...... .+.+++.|++.+.||+|+||..+|++|+..+
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999776543 4556889999999999999999999999999
Q ss_pred HHHHHHHhhchh----------------------c----cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHH
Q 011400 426 LRRLMVLLEGRQ----------------------E----VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFN 478 (487)
Q Consensus 426 ~rr~~~~le~~~----------------------~----~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~ 478 (487)
+++......-.. . ....+ .....+|+++||..|++.++||++.+ +..|++|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~ 347 (355)
T 2qp9_X 269 IRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFT 347 (355)
T ss_dssp HHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGG-GBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccccccccccCcCCccccchhhccccccccc-ccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 998654210000 0 00000 01135699999999999999999975 79999999
Q ss_pred HHhchh
Q 011400 479 ADYGSE 484 (487)
Q Consensus 479 ~~~g~~ 484 (487)
+.||++
T Consensus 348 ~~~~~~ 353 (355)
T 2qp9_X 348 RDFGQE 353 (355)
T ss_dssp HHTC--
T ss_pred HHhccC
Confidence 999986
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=355.92 Aligned_cols=294 Identities=47% Similarity=0.803 Sum_probs=237.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CC
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KT 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~ 266 (487)
.+.+.+...+....|.++|+||+|++.+++.|.+.+.+|+.++++|.....+++++||+||||||||++|+++|+++ +.
T Consensus 115 ~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 115 KLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp ---------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34445666777788999999999999999999999999999999988767788999999999999999999999999 89
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+|+.++++++.+.|.|.+++.++.+|..++...|+||||||+|.+.+.+... ......++.+.|+..++++......+
T Consensus 195 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 195 TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp EEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred CEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCE
Confidence 9999999999999999999999999999999999999999999998876543 23445788899999999886556678
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||+|||.|+.+|++++|||+..+++++|+.++|..|++.++...... .+.+++.|+..+.||+|+||..+|++|+..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766543 4567889999999999999999999999999
Q ss_pred HHHHHHHhhch-----hc---------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHH
Q 011400 426 LRRLMVLLEGR-----QE---------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 472 (487)
Q Consensus 426 ~rr~~~~le~~-----~~---------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~ 472 (487)
+++......-. .. ..+.+. ....+||++||..|++.++||++. ++.
T Consensus 353 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~ 431 (444)
T 2zan_A 353 VRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLL 431 (444)
T ss_dssp HHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHH
T ss_pred HHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHH
Confidence 99976531000 00 000000 012479999999999999999997 479
Q ss_pred HHHHHHHHhchh
Q 011400 473 RYEKFNADYGSE 484 (487)
Q Consensus 473 ~y~~~~~~~g~~ 484 (487)
.|++|++.||++
T Consensus 432 ~~~~~~~~~~~~ 443 (444)
T 2zan_A 432 KLKKFTEDFGQE 443 (444)
T ss_dssp HHHHHTSSCTTT
T ss_pred HHHHHHHHHcCC
Confidence 999999999986
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=373.60 Aligned_cols=266 Identities=34% Similarity=0.558 Sum_probs=236.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..|.++|+||+|++++|++|++.+.+|+.+|+.|..+ +.+|+|||||||||||||+||+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4578999999999999999999999999999999887 789999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+|.|++++.++.+|..|+.++||||||||+|.|++++.+.. ++..++++++|+..|+++.... .|+||++||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986554 58899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||++.|++++|+.++|.+||+.+++......++++..+|..|.||+|+||..+|++|+..+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999998888899999999999999999999999999999999987655432
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
......+. .....|+.+||..|++.++|+...
T Consensus 434 ~~~~~~e~-~~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 434 DETIDAEV-MNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp CCCCSHHH-HHHCEECTTHHHHHHSSSSCCCCC
T ss_pred ccccchhh-hccceeeHHHHHHHHHhCCCcccc
Confidence 22111110 112358999999999999998753
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=329.62 Aligned_cols=287 Identities=34% Similarity=0.618 Sum_probs=241.7
Q ss_pred hhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 194 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+.....|.++|+||+|++.+++.|.+.+.+++.+++.+... +.+++++||+||||||||++|+++|++++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 3566777899999999999999999999999999999988765 678899999999999999999999999999999999
Q ss_pred cccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
++++.+.+.|.+++.++.+|..+....|+||||||+|.+...++.... ......++++.|+..++++... ..++||++
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~a 160 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGA 160 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEe
Confidence 999999999999999999999999999999999999999987643211 1122346778899999987543 45889999
Q ss_pred eCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 352 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 352 Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
||.++.+|+++++ ||+..+++++|+.++|.+|++.++.......+.+++.++..+.||+|+||.++|++|+..++++.
T Consensus 161 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 161 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999988777777889999999999999999999999999999887
Q ss_pred HHHhhchhcc-------CCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHh
Q 011400 430 MVLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADY 481 (487)
Q Consensus 430 ~~~le~~~~~-------~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~ 481 (487)
+......... ...+.......|+++||..||++++||++.+ +..|++|.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 6432111000 0000011224699999999999999999974 79999999988
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=323.59 Aligned_cols=289 Identities=43% Similarity=0.741 Sum_probs=241.7
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.+.+.+.+++....++.+|++|+|++.+++.|.+.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp HHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 34556778888889999999999999999999999999999999887777788999999999999999999999999999
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcE
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELV 346 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~V 346 (487)
++.++++++...+.|..++.++.+|..+....|+||||||+|.+...+... ......++++.++..+++... ....+
T Consensus 145 ~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 145 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCE
Confidence 999999999999999999999999999999999999999999998765432 234557788899999998753 34568
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.++.+++++++||...+++++|+.++|.++++.++...... .+.+++.+++.+.||+++||..+|++|+..+
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988655433 2345788999999999999999999999999
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 484 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 484 (487)
++++.+..... . ......+|+.+||..|+++++||++. ++..|++|.+.||+.
T Consensus 303 ir~l~~~~~~~--~----~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 303 IRSLQTADIAT--I----TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHhhhhhhcc--c----cccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 98642211110 0 01223579999999999999999886 589999999999974
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=314.02 Aligned_cols=290 Identities=46% Similarity=0.764 Sum_probs=235.3
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+++.+.+++....++.+|++++|++.+++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 56678888888999999999999999999999999999999998887777789999999999999999999999999999
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC--CCcE
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV 346 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~V 346 (487)
+.++++++...+.|..+..++.+|..+....|+||||||+|.+...+.... ......+.+.++..+++.... ...+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcE
Confidence 999999999999999999999999999999999999999999987654321 222356777888888876432 2468
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.++.+++++++||...+++++|+.++|..|++.++...... .+..++.+++.+.||+++||..+|++|+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988765443 2345788999999999999999999999999
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchhhc
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSEIL 486 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~~~ 486 (487)
+++......... .......|+.+||..|+..++||.+.+ +..|++|.+.||+-.+
T Consensus 241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (297)
T 3b9p_A 241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296 (297)
T ss_dssp HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC--------
T ss_pred HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCeec
Confidence 986432111110 112235699999999999999998864 7999999999998543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=304.61 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=207.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..|.++|+||+|++++|+.|++.+.+|+.+++.+... +.+++|++|+||||||||+|++++|.+++..++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578899999999999999999999999999988776 678889999999999999999999999999999999999988
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.+.++.++.+..+|..++...|+++|+||+|.+...+... ......++.++++..|++.... ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8989899999999999988899999999999987654321 1122345778899999987543 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~---~~~~~~~l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
|++++| ||+..+++++|+.++|.+||+.+++.. ....+.+++.+|..+ +||+|+||..+|++|+..++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998643 334678899999874 5999999999999999999987543
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
..... . ......|+++||++|+++++||++.+
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 11124699999999999999998864
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=313.78 Aligned_cols=288 Identities=43% Similarity=0.706 Sum_probs=231.4
Q ss_pred HHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 190 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+.+.+++....+.++|++|+|++.+++.|.+.+..++.+++++.....+++++||+||||||||++|+++|++++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 33566778888899999999999999999999999999999988877778899999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 348 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlV 348 (487)
.+++.++.+.+.|..+..++.+|..+....|+||||||||.+...+... ......++++.|+..+++... ....++|
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 9999999999999999999999999999999999999999998765432 233456788889999987754 3456899
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
|++||.++.+++++++||...++++.|+.++|.+|++.++...... .+..+..++..+.||++++|..++++|+..+++
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~r 335 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999889999999999999999998765443 234578899999999999999999999999998
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchhh
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSEI 485 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~~ 485 (487)
++.+.... .........|+.+||..+++.++|+.+.+ +..|++|.+.||+..
T Consensus 336 el~~~~~~------~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 336 ELKPEQVK------NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp TSCCC---------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhhhh------ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 64321111 11112235699999999999999998864 799999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=287.55 Aligned_cols=269 Identities=35% Similarity=0.561 Sum_probs=219.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...|.++|++|+|++.+++.|.+.+..++..++.+... ..+++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678999999999999999999999999888887765 57889999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..+.|.....+..+|..+....|+||||||+|.+.+++.+... ........+..++..+++.... ..++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 9999999999999999999999999999999999877654322 2333456667788888776544 3588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++||..+|++|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988777778889999999999999999999999998887641
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh---hHHHHHHHHHHhchhhc
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGSEIL 486 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~---~~~~y~~~~~~~g~~~~ 486 (487)
...|+.+||.+|++++.+.... .-..|..|...||++-+
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 1359999999999998755433 35889999999998743
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=311.57 Aligned_cols=279 Identities=33% Similarity=0.537 Sum_probs=228.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
+.++|++|+|++.++++|.+.+..++.+++.+..+ ..++++|||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999988876 68889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.|+.+..++.+|..+....|++|||||+|.+.++++.. ..+...++++.|+..|++.... ..++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345678889999999977544 45889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++++ ||...+++++|+.++|.+||+.++.......+.++..++..+.||+++||..+|++|+..++++....+.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9998 99999999999999999999999998888888889999999999999999999999999999875432211111
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSE 484 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~~ 484 (487)
.... .......||++||.+|+++++||...+ ...-..|.+..|-+
T Consensus 436 ~~~~-~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 436 TIDA-EVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp SCCH-HHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ccch-hhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 0000 001124599999999999999998865 46667899998854
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=266.31 Aligned_cols=247 Identities=33% Similarity=0.513 Sum_probs=208.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...+..+|+||+|++.+++.|.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.+++.++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456788999999999999999998765 5556555544 56778999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..+.|..++.++.+|..+....|+++||||+|.+...++... .......++++.++..+++.... ..++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCch
Confidence 999999999999999999988899999999999987654321 12223456788899999987543 4588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+++++++ ||+..+.+++|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++.
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 236 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----- 236 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988777777888999999999999999999999998876631
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
...|+.+||.+|++.+..
T Consensus 237 -------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 -------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------CSSBCHHHHHHHHHHHTT
T ss_pred -------------CCcccHHHHHHHHHHHhc
Confidence 135999999999998764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=288.90 Aligned_cols=246 Identities=37% Similarity=0.567 Sum_probs=209.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++++|++|++.+.. +..+..+... ...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998865 4556656554 6778899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..+....|+||||||+|.+..+++... ..+....++++.|+..++++... ..++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 9999999999999999999999999999999987765321 22334457889999999977543 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||+..+.+++|+.++|.+|++.+++......+.++..++..+.||+|+||.++|++|+..+.++.
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~------- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG------- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-------
Confidence 999988 99999999999999999999999988777777889999999999999999999999998876531
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
...|+.+||..|+.++.+.
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--
T ss_pred -----------CCeecHHHHHHHHHHHhcC
Confidence 1359999999999998754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=267.13 Aligned_cols=248 Identities=34% Similarity=0.518 Sum_probs=191.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
|.++|++|+|++.+|+.|.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 567899999999999999998765 5556655443 57788999999999999999999999999999999999999888
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.+.....++.+|..+....|+||||||+|.+..++..... ........+..++..+++.... ..++||++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-DHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-CCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-CCEEEEecCCChhhc
Confidence 8888999999999999888999999999999876543211 1222345667788888876443 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~--l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
|+++++ ||+..+++++|+.++|.+|++.++.......+.+ ...++..+.||++++|..++++|+..+.++.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~----- 233 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG----- 233 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999 9999999999999999999999987665544333 3678999999999999999999998877642
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
...|+.+||..|++++.++...
T Consensus 234 -------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 -------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHHC
T ss_pred -------------CCCCCHHHHHHHHHHhccChhh
Confidence 1348999999999998776543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=276.96 Aligned_cols=260 Identities=34% Similarity=0.534 Sum_probs=216.1
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++++|+++.+.+.. +..+..+... ...+++++|+||||||||+||+++|.+++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3788999999999999999998765 4455555554 6778899999999999999999999999999999999999988
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..+....|+|+||||+|.+...++.. ........+.+++++..|++.... ..++++++||+|+.+
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~-~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS-CCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC-ccEEEEEecCChhhc
Confidence 999888899999999888889999999999998765421 112334467788999999987643 457899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||+..+.+++|+.++|.+||+.+++......+.++..++..+.|++|+||.++|++|+..+.++
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~-------- 254 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE-------- 254 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT--------
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999998 8999999999999999999999998777777888999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh-------hhHHHHHHHHHH
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNAD 480 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~-------~~~~~y~~~~~~ 480 (487)
....|+.+||..|+.++.+... ++..+...|++.
T Consensus 255 ----------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 295 (499)
T 2dhr_A 255 ----------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEA 295 (499)
T ss_dssp ----------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHH
T ss_pred ----------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHH
Confidence 1135999999999999876532 234445555543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=249.76 Aligned_cols=245 Identities=36% Similarity=0.569 Sum_probs=200.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+....|.++|++++|++.++.++++..... ..+..+... ...++|++|+||||||||++++++++.++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 345678999999999999999999877653 344444433 566788999999999999999999999999999999998
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+...+.+...+.+..+|..+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~ 163 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNR 163 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCC
Confidence 8888888888888999999887789999999999998665321 11223345677888899987754 345788999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.+|+++++ ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---- 239 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---- 239 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 8999999999999999999999887776667788999999999999999999999998877653
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....||.+||++|++
T Consensus 240 --------------~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 240 --------------GRRKITMKDLEEAAS 254 (254)
T ss_dssp --------------TCSSBCHHHHHHHTC
T ss_pred --------------cCCCcCHHHHHHHhC
Confidence 113599999999873
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-33 Score=271.29 Aligned_cols=253 Identities=34% Similarity=0.526 Sum_probs=205.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...+..+|++++|++.+++.|.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356788999999999999999998765 5666665543 56778899999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+.|.....++.+|..+....|+||||||+|.+...+..... ......++++.|+..+++.......++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 8888887777888899999889999999999999876422110 00011234456777777765555668899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+++++++ ||+..++++.|+.++|.++++.++.......+.+++.++..+.||+|+||..++++|+..+.++
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~----- 236 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN----- 236 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS-----
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998777666777888999999999999999999987764321
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
....|+.+|+.+|+..+.|+...+
T Consensus 237 -------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 113599999999999999987653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=242.78 Aligned_cols=244 Identities=36% Similarity=0.567 Sum_probs=198.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.++|++++|.+++++++....... ..+..+... ...+++++|+||||||||+|+++++..++..++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 33458899999999999999999877653 334444433 5667789999999999999999999999999999999988
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
...+.+...+.+..+|..+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.|
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p 188 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRP 188 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCc
Confidence 887778788888999999988889999999999997654321 01122345667788888887653 3457889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|+++++ ||+..++++.|+.++|.+||+.++.......+.++..++..+.|++++||..+|++|+..+.++
T Consensus 189 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~----- 263 (278)
T 1iy2_A 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 263 (278)
T ss_dssp TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999987776667788999999999999999999999998876542
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....|+.+||++|++
T Consensus 264 -------------~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 -------------GRRKITMKDLEEAAS 278 (278)
T ss_dssp -------------TCCSBCHHHHHHHTC
T ss_pred -------------CCCCcCHHHHHHHhC
Confidence 113599999999873
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-26 Score=229.09 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=134.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHH----HhcCCcEEEechhhhHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 312 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a----~~~~p~IL~IDEiD~L~ 312 (487)
..+++++|||||||||||++|+++|++++.+++.++++++.+.+.|.++..++.+|..+ +...|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46778999999999999999999999999999999999999999999999999999988 56789999999999998
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHH
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 380 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR 380 (487)
+.+..........+.+.+.|+..+|+.. .....++||+|||.++.+|++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654333223344567788999987543 123458899999999999999997 8988776 5799999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011400 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 416 (487)
Q Consensus 381 ~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~ 416 (487)
.+|++.++... ..+.+.+++.+.||++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887643 566899999999999998864
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-24 Score=225.58 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=139.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS 278 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~ 278 (487)
.|...|++++|++++++.+.+++... .....+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 35567999999999999998877432 22235678999999999999999999999999 9999999999999
Q ss_pred hccCCcHHHHHHHHHHH---HhcCCcEEEechhhhHHhhhcccchhhH--HHH---------------HHHHHHHHHhcC
Q 011400 279 KWRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--ASR---------------RLKTELLIQMDG 338 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a---~~~~p~IL~IDEiD~L~~~r~~~~~~~~--~~~---------------~i~~~Ll~~ld~ 338 (487)
++.|+++. +..+|..+ +...|+||||||+|.+++++........ ... ++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999987 89999998 7788999999999999987754321100 000 122335555542
Q ss_pred C-cCCCCcEEEEEEeCCCCcccHHHHh--hccc--cccCCCC--CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 339 L-TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 339 ~-~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~--~i~~~~P--d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
. ...+..++|++|||.++.+|++++| ||+. .++++.| +.++|.+|++.+.. .+++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 2 1234556677999999999999876 9988 5566777 44778877766542 268888999999 9
Q ss_pred HHHHHHHHH
Q 011400 412 SDIRLVSKE 420 (487)
Q Consensus 412 ~dI~~L~~~ 420 (487)
+||.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999854
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=193.25 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=161.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC----CCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~----~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~ 275 (487)
.+|+|++.+|+.|.+.+..+.. +..+.. ...++.++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 4799999999999998876542 222211 12455689999999999999999999988 34899999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.+.|.....+..+|..+ .++||||||+|.+...+++ ......+++.|+..++.. ...+++|+++|.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN---RDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC---CCCEEEEEeCChH
Confidence 99999999998888888776 3589999999999755332 112345667788888742 3346778888765
Q ss_pred C-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHh-------cCCcHHHHHHHHHHHH
Q 011400 356 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-------EGYSGSDIRLVSKEAA 422 (487)
Q Consensus 356 ~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t-------~G~sg~dI~~L~~~A~ 422 (487)
. .+++++++||+..+.|+.|+.+++..|++.++.......+. .++.++... ..-+++++..+++.|.
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 3 25789999999999999999999999999998765443222 244455552 2245899999999999
Q ss_pred hHHHHHHHH
Q 011400 423 MQPLRRLMV 431 (487)
Q Consensus 423 ~~a~rr~~~ 431 (487)
..+..|...
T Consensus 260 ~~~~~r~~~ 268 (309)
T 3syl_A 260 LRQANRLFT 268 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887664
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-21 Score=211.39 Aligned_cols=267 Identities=18% Similarity=0.148 Sum_probs=169.8
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCC
Q 011400 159 TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~ 238 (487)
+....+.+++++.....||......... .......-+++++|++++++.+.+.+.........
T Consensus 44 ~~e~~~~~~~l~~~~~lp~~~~~~~~~~-----------~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------ 106 (543)
T 3m6a_A 44 SAESSVIRNYIDWLVALPWTDETDDKLD-----------LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL------ 106 (543)
T ss_dssp CTTTTHHHHHHHHHHHSCSSCCCCCCCC-----------TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------
T ss_pred CchHhHHHHHHHHHhcCCCCcccccccc-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC------
Confidence 3456678888888888777554322111 01112223578999999999998877654432221
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
++.+++|+||||||||++|+++|..++.++..+++..+.. .|.|.....+...|..+....| ||||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 5668999999999999999999999999999999877543 4566666677777777766665 99999999
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC------------CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCH
Q 011400 310 AIISQRGEARSEHEASRRLKTELLIQMDGLTQS------------DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 377 (487)
Q Consensus 310 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~------------~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ 377 (487)
.+..+++. ...+.|+..++..... ...++||+|||.++.++++|++||. .+.++.|+.
T Consensus 186 ~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 186 KMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp SCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred hhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 99765321 1344577777643211 1457899999999999999999995 689999999
Q ss_pred HHHHHHHHHhCCC-----CCCC---CCCC---HHHHHHHhcC-CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 011400 378 EARRAMFESLLPS-----QTGE---ESLP---YDLLVERTEG-YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445 (487)
Q Consensus 378 eeR~~IL~~~l~~-----~~~~---~~~~---l~~la~~t~G-~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~ 445 (487)
+++..|++.++.. .... ...+ +..++....+ ...++|+..+..+...+..+... . .
T Consensus 256 ~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~---~---------~ 323 (543)
T 3m6a_A 256 IEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA---E---------E 323 (543)
T ss_dssp HHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT---T---------C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHh---c---------C
Confidence 9999999988622 1111 1112 3444443332 33455555555444444333321 0 0
Q ss_pred CCCCCCCHHHHHHHHhccCC
Q 011400 446 PQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 446 ~~~~~It~eD~~~AL~~~~p 465 (487)
.....||.+|+.+++...+.
T Consensus 324 ~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 324 RKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp CSCCEECTTTTHHHHCSCCS
T ss_pred CcceecCHHHHHHHhCCccc
Confidence 12245899999999986554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=187.12 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=154.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSK 279 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~ 279 (487)
|...|++++|.+.+++.+..+..... ....+++++||+||||||||++|+++|++++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 45559999999999998776553321 12235679999999999999999999999974 7888887664332
Q ss_pred cc-------------------------------------------------CCcHHHHHHHHHHHHh----c-----CCc
Q 011400 280 WR-------------------------------------------------GDSEKLIKVLFELARH----H-----APS 301 (487)
Q Consensus 280 ~~-------------------------------------------------g~se~~l~~~f~~a~~----~-----~p~ 301 (487)
+. |.....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 22 2222334444443322 1 267
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe-----------CCCCcccHHHHhhccccc
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI 370 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT-----------n~p~~Ld~aL~rRf~~~i 370 (487)
||||||+|.+.. ...+.|+..++.. ...++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998842 2344566666632 2235454443 3467899999999977 8
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCC
Q 011400 371 LVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG 449 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~ 449 (487)
.+++|+.+++.++++..+....... +..++.+++.+.+.+++++..+++.|...+..+ ...
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~~ 316 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KGT 316 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TCS
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CCC
Confidence 9999999999999998876544332 233677888888667889999999888776542 114
Q ss_pred CCCHHHHHHHHhccC
Q 011400 450 PIRPEDVEIALKNTR 464 (487)
Q Consensus 450 ~It~eD~~~AL~~~~ 464 (487)
.||.+|+.+++..+.
T Consensus 317 ~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 317 EVQVDDIKRVYSLFL 331 (368)
T ss_dssp SBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHhc
Confidence 599999999999743
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=183.44 Aligned_cols=180 Identities=22% Similarity=0.324 Sum_probs=130.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~ 283 (487)
++++|++.+++.+...+..+.....+.... ...+.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 579999999999999886643332221111 135678999999999999999999999999999999988865 45543
Q ss_pred c-HHHHHHHHHHH-----HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEE
Q 011400 284 S-EKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 350 (487)
Q Consensus 284 s-e~~l~~~f~~a-----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIa 350 (487)
. ...++.++..+ ....++||||||+|.+........ .......+.+.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2 34455555422 112358999999999987643222 222334456778888885421 123466777
Q ss_pred E----eCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 351 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 351 t----Tn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+ ++.+..+++++++||+..+.++.|+.+++.+|++..
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhh
Confidence 7 456788999999999988999999999999999853
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=179.76 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=154.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.+.....+.+|++++|.+.+++.+...+...... ..++.++||+||||||||++|+++|++++.+++.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 3445566778999999999999999988654321 134568999999999999999999999999999999876
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------------
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------------- 341 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------------- 341 (487)
+. ....+...+.. ...+++|||||+|.+... ....|+..++....
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCcccccee
Confidence 63 22333333332 245689999999988532 33445555553220
Q ss_pred -CCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 342 -SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 342 -~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
....+.+|++||....+++++++||+..+.++.|+.+++..+++..+....... +..++.++..+.|. .+++..+++
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~ 228 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLK 228 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHH
Confidence 112378899999999999999999988899999999999999998876544322 22355667755554 466666666
Q ss_pred HHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 420 EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 420 ~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.+...+... ....|+.+++..++.....+
T Consensus 229 ~~~~~a~~~------------------~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 229 RVRDFADVN------------------DEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHT------------------TCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHhh------------------cCCccCHHHHHHHHHHhCCc
Confidence 654332210 01236677777766655433
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=173.00 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=130.1
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCCc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS 284 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~s 284 (487)
.+.++|.+...+.+........ ..+......++.++||+||||||||++|+++|++++.+++.+++++... ...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3567887776666655311100 0000111356689999999999999999999999999999998875321 111122
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHH
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 363 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~ 363 (487)
...++.+|..+....+++|||||+|.+.+.+.... .....+++.|...+++.......++||+|||.++.+++ .++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677888888777789999999999976543211 12245666677777766556667889999999988888 678
Q ss_pred hhccccccCCCCCH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCC
Q 011400 364 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGY 409 (487)
Q Consensus 364 rRf~~~i~~~~Pd~-eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~ 409 (487)
+||...+.+|.++. ++...++... ... .+..+..+++.+.||
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCC
Confidence 89988888876654 4444444442 111 233456667777765
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=178.07 Aligned_cols=244 Identities=19% Similarity=0.262 Sum_probs=157.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh---cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-ccCC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 283 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~---~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~-~~g~ 283 (487)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999999885443222211 1122467899999999999999999999999999999999988743 6766
Q ss_pred c-HHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCcC----------------
Q 011400 284 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQ---------------- 341 (487)
Q Consensus 284 s-e~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~---------------- 341 (487)
. ...+..++..+ ....++||||||+|.+...+...... ......+.+.|+..|++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 45666676654 33456899999999998775543322 22334588899999984310
Q ss_pred --CCCcEEEEEEeCCC----------Cc-----------------------------------ccHHHHhhccccccCCC
Q 011400 342 --SDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 374 (487)
Q Consensus 342 --~~~~VlVIatTn~p----------~~-----------------------------------Ld~aL~rRf~~~i~~~~ 374 (487)
...++++|++++.. .. +.++|++||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11234455555532 01 68899999999999999
Q ss_pred CCHHHHHHHHHHhCCC-----------CCCC---CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 375 PDTEARRAMFESLLPS-----------QTGE---ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~~-----------~~~~---~~~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
|+.+++.+|+...+.. .... .+..++.|++. ...+..++|++++.++...++.+.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~--------- 326 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL--------- 326 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc---------
Confidence 9999999999872211 1111 11123445542 233445677777766665554432
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
+.........|+.+++++.+..
T Consensus 327 --~~~~~~~~~~I~~~~v~~~~~~ 348 (363)
T 3hws_A 327 --PSMEDVEKVVIDESVIDGQSEP 348 (363)
T ss_dssp --TTCCCSEEEECHHHHTTCCSCC
T ss_pred --ccccCCceeEEcHHHHhCcCCc
Confidence 1111112235788887776643
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=175.49 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=133.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCC--CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLL--SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~--~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~ 283 (487)
++|+|++++|+.|..++..+..++..+.... .+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5799999999999999988766666554432 35689999999999999999999999999999999998887 58885
Q ss_pred -cHHHHHHHHHHHH------------------------------------------------------------------
Q 011400 284 -SEKLIKVLFELAR------------------------------------------------------------------ 296 (487)
Q Consensus 284 -se~~l~~~f~~a~------------------------------------------------------------------ 296 (487)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 6666666554431
Q ss_pred -------------------------------------------------------------------------hcCCcEE
Q 011400 297 -------------------------------------------------------------------------HHAPSTI 303 (487)
Q Consensus 297 -------------------------------------------------------------------------~~~p~IL 303 (487)
....++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0023489
Q ss_pred EechhhhHHhhhcccchhhHHH-HHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhcccccc
Q 011400 304 FLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 371 (487)
Q Consensus 304 ~IDEiD~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~ 371 (487)
++||+|+++.+... ...+.+ .-++..||..+++... ....|++|+|. +.|.++-+.|++||..++.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865331 122222 3477789999997421 23557888887 3455566889999999999
Q ss_pred CCCCCHHHHHHHHH
Q 011400 372 VPLPDTEARRAMFE 385 (487)
Q Consensus 372 ~~~Pd~eeR~~IL~ 385 (487)
++.++.++..+|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999994
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=176.08 Aligned_cols=217 Identities=21% Similarity=0.241 Sum_probs=140.7
Q ss_pred hcCCCCCCCCcccCcHHHH---HHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k---~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
.....+.+|++++|++.++ +.|...+... ...++||+||||||||++|++|++.++.+++.+++.
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 3345667899999999999 7777777542 226899999999999999999999999999999875
Q ss_pred cchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
.. ..+.++.++..+.. ..+.||||||+|.+.... .+.|+..++. .. +.+|+
T Consensus 85 ~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-------------q~~LL~~le~----~~-v~lI~ 139 (447)
T 3pvs_A 85 TS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-------------QDAFLPHIED----GT-ITFIG 139 (447)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TS-CEEEE
T ss_pred cC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-------------HHHHHHHHhc----Cc-eEEEe
Confidence 43 23445555555542 357899999999885432 2336666663 23 44555
Q ss_pred Ee--CCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC--------CCCCHHHHHHHhcCCcHHHHHHHHHH
Q 011400 351 AT--NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE--------ESLPYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 351 tT--n~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~--------~~~~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
+| |....+++++++|+. ++.++.|+.++...+++..+...... .+..++.++..+.|. .+.+.+++..
T Consensus 140 att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd-~R~lln~Le~ 217 (447)
T 3pvs_A 140 ATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD-ARRALNTLEM 217 (447)
T ss_dssp EESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC-HHHHHHHHHH
T ss_pred cCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC-HHHHHHHHHH
Confidence 44 333579999999996 57899999999999999987652211 111234455554442 2333333333
Q ss_pred HHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 421 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 421 A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
+... ...+ ......||.+++.+++....+....
T Consensus 218 a~~~---------------a~~~-~~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 218 MADM---------------AEVD-DSGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp HHHH---------------SCBC-TTSCEECCHHHHHHHHTCCCCC---
T ss_pred HHHh---------------cccc-cCCCCccCHHHHHHHHhhhhhccCC
Confidence 2221 1100 0012459999999999987665443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=151.56 Aligned_cols=204 Identities=18% Similarity=0.148 Sum_probs=137.9
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
...++..|++++|.+..++.|.+.+... ...+++|+||||||||++|+++++++ ...++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3456778999999999999999988542 22359999999999999999999986 456788877
Q ss_pred ccchhhccCCcHHHHHHHHHHHH------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 274 SSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
..... ...+...+.... ...+.+|+|||+|.+... ..+.|+..++.. ...+.
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~---~~~~~ 134 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMY---SKSCR 134 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEE
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHhc---CCCCe
Confidence 65422 122222222222 245789999999987532 123355555432 23466
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
+|++||.+..+++++.+||. .+.+++|+.++..+++...+....... +..++.++..+.|. .+.+..+++.++..
T Consensus 135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l~~~l~~~~~~-- 210 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGAAAI-- 210 (226)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHHHT--
T ss_pred EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhc--
Confidence 78889999999999999997 799999999999999998875433321 12245566655553 23333333322211
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
. ..|+.+|+++++.
T Consensus 211 -------------~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 -------------G--------EVVDADTIYQITA 224 (226)
T ss_dssp -------------C--------SCBCHHHHHHHHH
T ss_pred -------------C--------ceecHHHHHHHhc
Confidence 0 2499999999986
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=167.77 Aligned_cols=195 Identities=18% Similarity=0.166 Sum_probs=138.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
...+.+|++++|.+.+++.+.+.+...... ..++.++||+||||||||++|++++++++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345668999999999999999887543211 124568999999999999999999999999999999877632
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCC
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 344 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~ 344 (487)
...+...+..+ ...+++|||||+|.+... ....|+..++... ....
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22222222220 145689999999987532 1223444444221 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
.+.+|++||.+..+++++++||...+.++.|+.+++..+++.++.......+ ..++.++..+.|. ++++..+++.+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHH
Confidence 4678899999999999999999888999999999999999998765443322 2356677777664 466666666554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=171.63 Aligned_cols=223 Identities=16% Similarity=0.234 Sum_probs=146.1
Q ss_pred CCCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 011400 200 GSPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 271 (487)
Q Consensus 200 ~~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v 271 (487)
..+..+|++++ | ...+...+......+- . +++++|+||||||||+||+++++++ +.+++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 34667899987 5 3344445554443321 1 4689999999999999999999988 8889999
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
++.++...+.+.........|.......++||||||++.+..+. .....|+..++..... +..+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 98887554433222111112322223367899999999986431 1112233343322222 23445555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
.+.+.. +++++++||. ..+.+++|+.++|..|++..+....... +..++.++..+.| +.+++..+++.+...+
T Consensus 235 ~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 455554 8899999996 6789999999999999999876444332 2336778887775 6678887777765543
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
... ...||.+++.++++...+
T Consensus 314 ~~~-------------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ETT-------------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHS-------------------SSCCCHHHHHHHTSTTTC
T ss_pred HHh-------------------CCCCCHHHHHHHHHHHhh
Confidence 210 124899999999988764
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=158.23 Aligned_cols=166 Identities=21% Similarity=0.340 Sum_probs=118.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------C
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------K 265 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~ 265 (487)
.+....++..|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++++ +
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 78 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 78 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 333444556799999999999999887643 235689999999999999999999987 7
Q ss_pred CcEEEEecccch--hhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 266 TTFFNISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 266 ~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
.+++.+++..+. ..+.+.....+..++..+. ...+.||+|||+|.+...+..... ..+.+.+...++ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~----~ 149 (195)
T 1jbk_A 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA----R 149 (195)
T ss_dssp CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH----T
T ss_pred CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc----c
Confidence 888999887765 3444556667777777554 345789999999999754321100 111222323332 1
Q ss_pred CCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 343 DELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 343 ~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
..+.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 150 -~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 2355777888775 68999999998 5899999999998775
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=167.79 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=118.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+...+++.+|++++|.+.+++.|..++... ..++.+|++||||||||++|+++|++++.+++++++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 344566778999999999999999988631 345678889999999999999999999999999998764
Q ss_pred hhhccCCcHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 277 VSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
. ...++..+...... .+.||||||+|.+.+. ...+.|+..++.. ...+.+|++
T Consensus 85 ~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~------------~~~~~L~~~le~~---~~~~~iI~~ 142 (324)
T 3u61_B 85 K-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA------------ESQRHLRSFMEAY---SSNCSIIIT 142 (324)
T ss_dssp C-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH------------HHHHHHHHHHHHH---GGGCEEEEE
T ss_pred C-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH------------HHHHHHHHHHHhC---CCCcEEEEE
Confidence 2 33444444433222 4689999999998511 1223455555532 233567889
Q ss_pred eCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 352 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 352 Tn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
||.+..+++++++||. .+.++.|+.+++.+|++.++
T Consensus 143 ~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 143 ANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp ESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred eCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999995 59999999999877765543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=151.07 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=142.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
....+..|++++|.+..++.|.+.+... ..++.++|+||||||||+++++++++++..
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456667999999999999999887542 234579999999999999999999987432
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++... ......+..++..+. ...+.+|+|||+|.+.. ...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~ 144 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFN 144 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHH
T ss_pred HHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHH
Confidence 22222211 112233444444432 23468999999998732 1234
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~ 409 (487)
.|+..++.. ...+.+|++|+.+..+++++++|+ ..+.+++|+.++..++++.++....... +..++.+++.+.|
T Consensus 145 ~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 145 ALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp HHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred HHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 466666532 345678888998889999999997 5689999999999999998875443322 2236678888877
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 410 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
.++.+..+++.|...+ ...||.+|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 220 SLRDALSLTDQAIASG----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp CHHHHHHHHHHHHTTT----------------------TSSBCHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcc----------------------CceecHHHHHHHhC
Confidence 6677777776653210 02599999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=163.51 Aligned_cols=198 Identities=22% Similarity=0.229 Sum_probs=130.3
Q ss_pred CCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 201 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 201 ~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+..+|++++ | ...+...+...+..+- ..+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4667899997 4 4556666666554421 235689999999999999999999998 8999999998
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++...+.+.........|.... ..+++|||||++.+..++. ....++..++..... +..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8765544333222112222222 2368999999999864311 111233333322222 23556666666
Q ss_pred CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 355 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 355 p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+. .+++++++||. ..+.+++ +.+++..|++..+.......+ ..++.++..+ | ..+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 58999999996 5688888 999999999998865443322 2356678887 4 456676666655443
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=176.20 Aligned_cols=195 Identities=21% Similarity=0.294 Sum_probs=135.8
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+...+++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 164 ~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p 231 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (468)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 34455566666777899999999999999988754 234689999999999999999999997
Q ss_pred ----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 265 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 265 ----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
+.+++.++++ ..|.|..+..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 232 ~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~--- 288 (468)
T 3pxg_A 232 EILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA--- 288 (468)
T ss_dssp TTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT---
T ss_pred hhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc---
Confidence 7889998887 67788888889999999998889999999 10 011222333332
Q ss_pred CCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-----CCHHHHHHHhcCCc
Q 011400 341 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-----LPYDLLVERTEGYS 410 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-----~~l~~la~~t~G~s 410 (487)
.+.+.+|++||.+. .+++++++||.. +.++.|+.+++..|++.++........ ..+..++..+.+|.
T Consensus 289 --~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 23477888998886 589999999975 999999999999999998876432222 22455666666554
Q ss_pred -----HHHHHHHHHHHHh
Q 011400 411 -----GSDIRLVSKEAAM 423 (487)
Q Consensus 411 -----g~dI~~L~~~A~~ 423 (487)
+...-.++.+|+.
T Consensus 366 ~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 366 SDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp CCSCTTHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHH
Confidence 3355566666553
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=160.53 Aligned_cols=227 Identities=20% Similarity=0.176 Sum_probs=152.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~ 272 (487)
+....++++|.+..++.|...+...+. ...+.+++|+||||||||++++++++++ +.+++.++
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 344458999999999999987744321 1345689999999999999999999988 78899999
Q ss_pred cccchhh----------------ccCCcH-HHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 273 ASSVVSK----------------WRGDSE-KLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 273 ~~~l~~~----------------~~g~se-~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
+....+. ..|... ..+..++...... .|++|+|||+|.+...+ .....+..++.
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~ 157 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITR 157 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhh
Confidence 8754321 112222 3344455444333 37799999999996532 01234444555
Q ss_pred HhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCC--CCCC-CCCCHHHHHHHhc
Q 011400 335 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE 407 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~--~~~~-~~~~l~~la~~t~ 407 (487)
.++.... ...+.+|++||.+ ..+++++++||.. .+.+++|+.++..++++..+.. .... .+..++.+++.+.
T Consensus 158 ~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 158 INQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4443211 3456788888887 6789999999975 7999999999999999988653 1111 2333667777777
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 ---G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|. ++.+..+++.|+..+..+ ....|+.+|+.+++....
T Consensus 237 ~~~G~-~r~~~~~l~~a~~~a~~~------------------~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 237 REHGD-ARRALDLLRVAGEIAERR------------------REERVRREHVYSARAEIE 277 (387)
T ss_dssp SSSCC-HHHHHHHHHHHHHHHHHT------------------TCSCBCHHHHHHHHHHHH
T ss_pred HhccC-HHHHHHHHHHHHHHHHHc------------------CCCCcCHHHHHHHHHHHh
Confidence 64 455667777775543321 113488999998887764
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=151.80 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=136.9
Q ss_pred CCCCCCcccC---cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 202 PDVKWESIKG---LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G---~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
+..+|++++| .+.+.+.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3467999987 34667777666543 235789999999999999999999987 47888999887
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+....... +. ....+.+|+|||+|.+..... ....|+..++.........+|++++..+
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCCHH-----------HHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 76543211 11 113468999999998854310 1122333333222222222444444444
Q ss_pred C---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 356 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 356 ~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
. .+++++.+||. ..+.++.|+.+++.+++..++.......+ ..++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999996 77999999999999999998864443222 235667777765 5667777777666554321
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 430 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 430 ~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...||.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 13489999999986
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-17 Score=166.82 Aligned_cols=246 Identities=17% Similarity=0.217 Sum_probs=144.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchh------------------hcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~------------------~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+.|+|++.+|+.|...+..+..+... ......++.++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46899999999999888543322211 112234567899999999999999999999999999
Q ss_pred EEEecccch-hhccCCc-HHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCCc-
Q 011400 269 FNISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT- 340 (487)
Q Consensus 269 i~v~~~~l~-~~~~g~s-e~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~- 340 (487)
+.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+........ ....+.+.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 444555554322 235689999999999876432111111 11236778888888531
Q ss_pred ---C--------------CCCcEEEEEEeCC-----------------------------------------CCcccHHH
Q 011400 341 ---Q--------------SDELVFVLAATNL-----------------------------------------PWELDAAM 362 (487)
Q Consensus 341 ---~--------------~~~~VlVIatTn~-----------------------------------------p~~Ld~aL 362 (487)
. ....+++|+++|. ...+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 0133566777762 01256788
Q ss_pred HhhccccccCCCCCHHHHHHHHHHhCCCC-----------CCC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHH
Q 011400 363 LRRLEKRILVPLPDTEARRAMFESLLPSQ-----------TGE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 363 ~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-----------~~~---~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~ 426 (487)
++||+.++.+++++.++...|+...+... ... .+..++.+++... ....+.+..++..+...++
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~ 340 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIM 340 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHH
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 88998889999999999999887422110 000 1111344444432 2344566666655555444
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.+... . ......||.+++.++++.+.
T Consensus 341 ~~~~~---~---------~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 341 FDLPK---L---------KGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HTGGG---G---------TTSEEEECHHHHTTSSCCEE
T ss_pred hhccC---C---------CCCEEEEeHHHhcCCCCcee
Confidence 33211 0 01123589999988665543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-17 Score=160.47 Aligned_cols=208 Identities=22% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
.++++|.+.+++.+...+....... .....|..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3578999999999998885542110 1112345689999999999999999999998 567999998776432
Q ss_pred --cc-------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------C
Q 011400 280 --WR-------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 342 (487)
Q Consensus 280 --~~-------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 342 (487)
.. |... ...+........++||||||+|.+.. .+.+.|+..++.... .
T Consensus 93 ~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEE
T ss_pred HHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEE
Confidence 11 1110 01222333344458999999998743 244556666653321 1
Q ss_pred CCcEEEEEEeCC--------------------------CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----
Q 011400 343 DELVFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 392 (487)
Q Consensus 343 ~~~VlVIatTn~--------------------------p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~---- 392 (487)
-..+++|+|||. ...+++++++||+..+.+++|+.+++..|++.++....
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 135678899998 34678899999998899999999999999999875421
Q ss_pred ---CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 393 ---GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 393 ---~~---~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
.. .+..++.+++..- ..+.++|..+++.+...++.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 1122455666544 567889999999988887776553
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=179.91 Aligned_cols=228 Identities=23% Similarity=0.285 Sum_probs=157.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 270 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~ 270 (487)
..+.+|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +..++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 3445799999999999999887743 245789999999999999999999987 667888
Q ss_pred Eecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 271 ISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 271 v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
++...+. .++.|..+..++.++..+....++||||||+|.+.+........ .... ..+....... .+.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~----~~L~~~l~~~-~~~~ 318 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAA----NLIKPLLSSG-KIRV 318 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHH----HHHSSCSSSC-CCEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHH----HHHHHHHhCC-CeEE
Confidence 8887776 46788999999999999988788999999999998654321111 1122 2233332333 4567
Q ss_pred EEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----CC-CCCCHHHHHHHhcC-----CcHHH
Q 011400 349 LAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERTEG-----YSGSD 413 (487)
Q Consensus 349 IatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~----~~-~~~~l~~la~~t~G-----~sg~d 413 (487)
|++|+.+ ..+|+++.+||. .+.++.|+.+++.+|++.++.... .. .+..++.++..+.+ +.+..
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 7788764 357889999998 599999999999999998764321 11 11224556665554 34556
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 414 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 414 I~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
+..++.+|+... +. . +. ......|+.+|+.+++..+.
T Consensus 398 ~i~lld~a~~~~--~~----~------~~--~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARA--RL----M------PV--SKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHH--HH----S------SS--CCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH--hc----c------cc--cccCCccCHHHHHHHHHHhc
Confidence 666777665321 11 0 00 01124589999999998864
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-16 Score=156.43 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=107.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch--hhccCC
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--SKWRGD 283 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~--~~~~g~ 283 (487)
+++++|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... ....|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 68999999999998877643 25799999999999999999999999999998874211 111110
Q ss_pred cH-HHHHHHHHHHHhcC---CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cCCCCcEEEEEE
Q 011400 284 SE-KLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFVLAA 351 (487)
Q Consensus 284 se-~~l~~~f~~a~~~~---p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~VlVIat 351 (487)
.. ......+ ..... .+||||||+|.+.+. ..+.|+..++.. ...+..++||+|
T Consensus 92 ~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 92 MIYNQHKGNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEETTTTEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred eeecCCCCce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 00 0000000 00111 279999999987432 233455555421 112334667788
Q ss_pred eCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 352 TNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 352 Tn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
+|... .+++++++||...+.++.|+.+++.+|++..+..
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88543 3899999999888999999999999999988754
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-17 Score=181.02 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=136.0
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+...+++.......++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 164 ~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p 231 (758)
T 3pxi_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (758)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCC
Confidence 34455666666777899999999999999988754 234689999999999999999999997
Q ss_pred ----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 265 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 265 ----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
+.+++.+++ ..+|.|+.+..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 232 ~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~--- 288 (758)
T 3pxi_A 232 EILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA--- 288 (758)
T ss_dssp TTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT---
T ss_pred hhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh---
Confidence 788888887 566888899999999999999899999999 00 011222333332
Q ss_pred CCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-----HHHHHHHhc---
Q 011400 341 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERTE--- 407 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-----l~~la~~t~--- 407 (487)
.+.+.+|++||... .+|+++++||. .+.++.|+.+++.+||+.++.......... +..++..+.
T Consensus 289 --~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 23477888888887 69999999995 599999999999999998876643322222 444555443
Q ss_pred --CCcHHHHHHHHHHHHh
Q 011400 408 --GYSGSDIRLVSKEAAM 423 (487)
Q Consensus 408 --G~sg~dI~~L~~~A~~ 423 (487)
++.+.....++.+|+.
T Consensus 366 ~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 366 SDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp CCSCTTHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHH
Confidence 4455666666666654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-16 Score=155.47 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=142.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------CcEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------~~~i 269 (487)
.+...+++.+|++++|.+++++.|...+... ...++||+||||||||++|+++++.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 3444567788999999999999998887431 123499999999999999999999864 4678
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHH----------------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~----------------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
.+++++..+ ...++..+.... ...+.||+|||+|.+... ..+.|+
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll 154 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALR 154 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHH
Confidence 888766421 111222111111 123469999999988543 223466
Q ss_pred HHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHH
Q 011400 334 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGS 412 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~ 412 (487)
..++... ....+|.++|.+..+++++++|+. .+.+++|+.++...+++..+....... +..++.+++.+.|...
T Consensus 155 ~~le~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r- 229 (353)
T 1sxj_D 155 RTMETYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR- 229 (353)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH-
T ss_pred HHHHhcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH-
Confidence 6665332 234566788999999999999996 689999999999999998875444322 2336677787776533
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.+.++++.++..+-+. . ....||.+|+.+++....
T Consensus 230 ~~~~~l~~~~~~~~~~---------~--------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 230 RGITLLQSASKGAQYL---------G--------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHHHTHHHHHHH---------C--------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCC---------c--------cCccccHHHHHHHhCCCC
Confidence 3334444443321110 0 001478888888877543
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=169.98 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=127.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccC-chhhcCC----CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~-~~~~~~~----~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.+.+++.+|++++|.+.+++.|.+++...... +..+... ..+++++||+||||||||++|+++|++++.+++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4555677789999999999999999998653221 1112211 1256799999999999999999999999999999
Q ss_pred EecccchhhccCCcH-------HHHHHHHHHH-----HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 271 ISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 271 v~~~~l~~~~~g~se-------~~l~~~f~~a-----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
++++++......... ..+..+|..+ ....++||||||+|.+..... ..+..|+..++.
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~ 177 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRK 177 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHHh
Confidence 999886543211000 0011222222 124578999999999865421 112334444442
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCC
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGY 409 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~ 409 (487)
....+++++++.....+. ++++|+ ..+.|+.|+.+++.+++...+...... .+..++.+++.+.|-
T Consensus 178 ---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 178 ---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp ---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC
T ss_pred ---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 223344444333333444 355555 579999999999999998876543332 233467788777653
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=157.95 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=101.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T------ 267 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~------ 267 (487)
.++.+|++++|.+.+++.+......+ ...++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46778999999999888765544321 2246999999999999999999998863 1
Q ss_pred --------------------EEEEecccchhhccCCcHHHHHHHHHHH---------HhcCCcEEEechhhhHHhhhccc
Q 011400 268 --------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGEA 318 (487)
Q Consensus 268 --------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a---------~~~~p~IL~IDEiD~L~~~r~~~ 318 (487)
++.+..........|... +...+... ....+++|||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 221111111111111100 01111111 1113589999999988533
Q ss_pred chhhHHHHHHHHHHHHHhcC----CcC------CCCcEEEEEEeCCCC-cccHHHHhhccccccCCCC-CHHHHHHHHHH
Q 011400 319 RSEHEASRRLKTELLIQMDG----LTQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFES 386 (487)
Q Consensus 319 ~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~ 386 (487)
..+.|+..++. +.. ....+++|+++|... .+++++++||...+.++.| +.+++.+|++.
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 23345555542 111 112578889999754 7999999999888999998 67788788877
Q ss_pred h
Q 011400 387 L 387 (487)
Q Consensus 387 ~ 387 (487)
.
T Consensus 231 ~ 231 (350)
T 1g8p_A 231 R 231 (350)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-16 Score=156.69 Aligned_cols=213 Identities=20% Similarity=0.180 Sum_probs=142.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----------~~~~i~v~~~ 274 (487)
.++++|.+..++.|.+.+...... ..+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 488999999999999887553321 345689999999999999999999988 8899999976
Q ss_pred cch-hh-----------------ccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHH-HHHHHH
Q 011400 275 SVV-SK-----------------WRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 334 (487)
Q Consensus 275 ~l~-~~-----------------~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i-~~~Ll~ 334 (487)
... .. ..+. ....+..++..+....+ ||+|||+|.+..... ... +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhc
Confidence 543 11 0111 13334555554544444 999999999965321 011 222322
Q ss_pred HhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC---CCCCCCCHHHHHHHhc-
Q 011400 335 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERTE- 407 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~---~~~~~~~l~~la~~t~- 407 (487)
. . ..+.+|++||.+ ..+++++++||...+.+++|+.++..++++..+... ....+..++.+++.+.
T Consensus 161 ~----~---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 161 S----D---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S----S---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C----C---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 1 457788888887 678999999997789999999999999999876421 1112223556666666
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 --G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|. .+.+..+++.|+..+. ....|+.+|+.+++....
T Consensus 234 ~~G~-~r~a~~~l~~a~~~a~--------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGD-ARKAVNLLFRAAQLAS--------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCC-HHHHHHHHHHHHHHTT--------------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHhc--------------------CCCccCHHHHHHHHHHHh
Confidence 32 2333344444432211 113489999999888764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=148.60 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=109.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 272 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~ 272 (487)
+..|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45699999999999998887743 234689999999999999999999987 77888888
Q ss_pred cccchh--hccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 273 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 273 ~~~l~~--~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+...... ..+.+.|...++. ..+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~~-----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLAR-----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHHT-----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHhc-----CCeeEE
Confidence 877653 24455566677777776654 67899999999997543211111 1122223333331 335677
Q ss_pred EEeCCCC-----cccHHHHhhccccccCCCCC
Q 011400 350 AATNLPW-----ELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 350 atTn~p~-----~Ld~aL~rRf~~~i~~~~Pd 376 (487)
+++|.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888764 589999999985 8888885
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=155.62 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=124.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v 271 (487)
+...+++.+|++++|.+.+++.|...+... .. .++||+||||||||++|+++++.+ +.+++.+
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-----------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTTT-----------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhCC-----------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 445667788999999999999998876431 12 349999999999999999999986 3467888
Q ss_pred ecccchhhccCCcHHHHHHHHHHHH--hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~--~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
++++..+. ......+..+..... ...+.||+|||+|.+... ..+.|+..++. ....+.+|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 75 NASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp ETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEE
T ss_pred eCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 88764321 122222222221100 134689999999988532 22335555553 33456788
Q ss_pred EEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 350 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 350 atTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
++||.+..+.+++++|+. .+.+++|+.++...++...+.......+ ..++.++..+.|
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 889999999999999996 6999999999999999988765443322 224455555554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=151.44 Aligned_cols=225 Identities=18% Similarity=0.176 Sum_probs=148.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------CCcEEEEeccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------~~~~i~v~~~~ 275 (487)
+....++++|.+...+.|.+.+...+. ...+..++|+||||||||++++++++.+ +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 445568999999999999987754321 1345689999999999999999999988 88899998754
Q ss_pred chhh----------------ccCC-cHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 276 VVSK----------------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 276 l~~~----------------~~g~-se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ..+. .......++....... |.||+|||++.+..... ...+..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 3211 1122 2233445555554443 88999999999975421 123445666665
Q ss_pred CCcCCCCcEEEEEEeCCC---CcccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHhc---
Q 011400 338 GLTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLLVERTE--- 407 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~---~~~~l~~la~~t~--- 407 (487)
.. ....+.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+++...+...... .+..++.+++.+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 23457778888877 457888999985 379999999999999999876422111 1122455666666
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|.. +.+..+++.++..+..+ ....|+.+|+..|+....
T Consensus 236 G~~-r~~~~ll~~a~~~a~~~------------------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 236 GDA-RRALDLLRVSGEIAERM------------------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CCH-HHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHhc------------------CCCccCHHHHHHHHHHHh
Confidence 544 44455677665443321 113478888888777654
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=151.44 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=127.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
...++..|++++|.+.+++.|...+... ..+ +++|+||||+|||++|+++++.+ +..++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3456778999999999999999987531 223 39999999999999999999986 355788877
Q ss_pred ccchhhccCCcHHHHHHHHHHHH-------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 274 SSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~-------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
++.. ....++.++.... ...+.||+|||+|.+... ..+.|+..++. ....+
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~ 138 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNST 138 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCc
Confidence 6532 1334444454443 223689999999988532 12335555552 22345
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~d 413 (487)
.+|++||.+..+.+++++|+. .+.+++|+.++..++++..+....... +..++.+++.+.|.....
T Consensus 139 ~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a 205 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA 205 (323)
T ss_dssp EEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred eEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 677788889999999999996 699999999999999998775433321 223566777777654433
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=181.91 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=137.8
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+++.+++.....+.+|++++|.+...+.+.+.+.. ...++++|+||||||||++|+++|+.+
T Consensus 154 ~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p 221 (854)
T 1qvr_A 154 EQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP 221 (854)
T ss_dssp HHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 35556666666677899999999999998887743 234679999999999999999999988
Q ss_pred ----CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 265 ----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 265 ----~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+.....+ ...+.+.|...++
T Consensus 222 ~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~ 296 (854)
T 1qvr_A 222 EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA 296 (854)
T ss_dssp TTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH
T ss_pred hhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh
Confidence 8899999998886 568889999999999988875 688999999999986543211 1222333444443
Q ss_pred CCcCCCCcEEEEEEeCCCC----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-----CCCHHHHHHHhc-
Q 011400 338 GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTE- 407 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-----~~~l~~la~~t~- 407 (487)
. ..+.+|++||.++ .+++++.+||.. +.++.|+.+++.+|++.++....... +..+..++..+.
T Consensus 297 ----~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 297 ----R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp ----T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred ----C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 1 2355778888764 478999999986 99999999999999987765332111 122444555543
Q ss_pred ----CCcHHHHHHHHHHHHhH
Q 011400 408 ----GYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 408 ----G~sg~dI~~L~~~A~~~ 424 (487)
.|.+.....++.+|+..
T Consensus 371 ~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHH
T ss_pred hcccccChHHHHHHHHHHHHH
Confidence 45566666666666543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=146.98 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=145.6
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
......+|++++|.+.+++.+...+...... ..++.+++|+||||||||||++++|++++.++...++..+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3445567999999999999888776432111 124467999999999999999999999999887776544321
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------C--------CC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------SD 343 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~--------~~ 343 (487)
...+..++.. ...+.|+||||++.+.+.. .+.|+..++... . ..
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~-------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC---------------
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCHHH-------------HHHHHHHHHhcccceeeccCcccccccccC
Confidence 1223333322 2245799999999885321 112223332111 0 01
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..+.++++++.+..+++++++||...+.+++|+.++..++++..........+ ..+..+++.+.|.. +++..+++.+.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~ 227 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVR 227 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHH
Confidence 23556778999999999999999888899999999999999987654333322 22566788777754 66667777664
Q ss_pred hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 423 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 423 ~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+..+ + ...||.+++.+++....
T Consensus 228 ~~a~~~------~------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 228 DMLTVV------K------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHH------T------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHc------C------------CCCcCHHHHHHHHHHhC
Confidence 443221 0 12478888888887765
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=150.36 Aligned_cols=183 Identities=21% Similarity=0.190 Sum_probs=125.3
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~ 270 (487)
.+....++.+|++++|.+.+++.|...+... ...++||+||||||||++|+++++.+. ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 3455577888999999999999999887542 223599999999999999999999863 34778
Q ss_pred EecccchhhccCCcHHHHHHHHHHH--HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 271 ISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 271 v~~~~l~~~~~g~se~~l~~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
+++++..+. ......+....... ....+.+|+|||+|.+... ..+.|+..++.. ...+.+
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~ 143 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMF---SSNVRF 143 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEEE
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc---CCCCeE
Confidence 877654221 11111222211100 0134689999999988432 234456666532 234667
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCC
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 409 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~ 409 (487)
|+++|.+..+.+++.+|+. .+.+++|+.++...+++..+....... +..++.++..+.|.
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 7789999999999999997 689999999999999998875544321 22355666666653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=148.95 Aligned_cols=225 Identities=15% Similarity=0.096 Sum_probs=149.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCe--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~--gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~ 275 (487)
+....++++|.+...+.|.+.+...... ..+. +++|+||||||||++++++++.+ +..++.++|..
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 3445589999999999999888553321 1233 89999999999999999999998 57889998765
Q ss_pred chhh----------------ccCCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 276 VVSK----------------WRGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 276 l~~~----------------~~g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ..+.. ......+...... ..|.||+|||+|.+. ...+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHH
Confidence 4321 01111 2223333333322 447899999999871 234455666665
Q ss_pred CCcC-CCCcEEEEEEeCCC---CcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHh---
Q 011400 338 GLTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERT--- 406 (487)
Q Consensus 338 ~~~~-~~~~VlVIatTn~p---~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~~---~~~~~~l~~la~~t--- 406 (487)
.... ....+.+|+++|.+ ..+++.+.+||.. .+.+++++.++..++++..+.... .-.+..++.+++.+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 4322 01357788888887 5688999999975 799999999999999988775311 11222356677888
Q ss_pred ------cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 407 ------EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 407 ------~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.| ..+.+..+++.|+..+..+ ....|+.+|+..++......
T Consensus 231 ~~~~~~~G-~~r~~~~~l~~a~~~a~~~------------------~~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 231 TPLDTNRG-DARLAIDILYRSAYAAQQN------------------GRKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp STTCTTSC-CHHHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHHHSCC
T ss_pred ccCCCCCC-cHHHHHHHHHHHHHHHHHh------------------CCCCcCHHHHHHHHHHHhhh
Confidence 44 3456667777776554331 01247788888777776554
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=153.88 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=115.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccchh
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 278 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~~~~l~~ 278 (487)
+.|.++..+.|...+...+.. ..+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~--------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS--------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 667777778877776544321 356789999999999999999999998 34688999876543
Q ss_pred h----------c------cCCcHHHHHHHHHHH--HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 279 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 279 ~----------~------~g~se~~l~~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
. . .+.+...+..+|... ....+.||+|||+|.+. . +.++..|+.+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 234566778888764 34567899999999996 1 223344444432
Q ss_pred CCCCcEEEEEEeCCCCc----ccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCC
Q 011400 341 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~----Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.....+.||+++|..+. +++++++||. .++.|++|+.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23456888999988764 4556678996 57999999999999999998754
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=170.80 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=141.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~ 283 (487)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998886532110 0111333479999999999999999999998 6899999999998776654
Q ss_pred cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCC
Q 011400 284 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 355 (487)
Q Consensus 284 se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p 355 (487)
...+....+...++||||||||.+.+ .+.+.|+..++.-. .....++||+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233444555678999999988742 35566777776421 122346788999976
Q ss_pred Cc------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC-------CCCCCC---CHHHHHHH--hcCCcH
Q 011400 356 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGEESL---PYDLLVER--TEGYSG 411 (487)
Q Consensus 356 ~~------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-------~~~~~~---~l~~la~~--t~G~sg 411 (487)
.. +.+++++||+..+.|++|+.+++..|++.++... ...... .++.+++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 43 7889999998899999999999999998876432 111111 23445443 223556
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 011400 412 SDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~ 430 (487)
++|+.+++++...++.+.+
T Consensus 711 R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TTHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7888888888777776544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=150.16 Aligned_cols=188 Identities=22% Similarity=0.249 Sum_probs=130.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
..+.+.+|++++|.+.+++.|...+... ..++.+||+||||||||++|+++++.++..
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3456678999999999999999987432 234579999999999999999999988542
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++...- .....++.++..+.. ..+.||+|||+|.+... ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~ 137 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFN 137 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HHH
T ss_pred HHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HHH
Confidence 233332210 111224445544432 23579999999987421 234
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
.|+..++. ....+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..++.+++.+.|
T Consensus 138 ~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G- 212 (373)
T 1jr3_A 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 212 (373)
T ss_dssp HHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-
T ss_pred HHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-
Confidence 56677763 2345677778888889999999998 56899999999999999988765443322 225667787876
Q ss_pred cHHHHHHHHHHH
Q 011400 410 SGSDIRLVSKEA 421 (487)
Q Consensus 410 sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 ~~r~~~~~l~~~ 224 (373)
T 1jr3_A 213 SLRDALSLTDQA 224 (373)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 445666666554
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=167.96 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=143.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~------- 279 (487)
++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 35889999999888877542210 00112345679999999999999999999999999999999887543
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------CCCcE
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 346 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~V 346 (487)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|+..|+.-.- .-..+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 2222111 1234444555679999999998742 356667777773211 11357
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC---------
Q 011400 347 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT--------- 392 (487)
Q Consensus 347 lVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~--------- 392 (487)
+||+|||.+. .+++++++||+.++.|++|+.+++..|++.++....
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 7899999754 578899999998899999999999999998875321
Q ss_pred CC-CCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 393 GE-ESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 393 ~~-~~~~l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
.. .+..++.+++.. ..+..+++..+++.+...++.+.+
T Consensus 680 ~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 680 LEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 11 112245566543 345678899998888888776643
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=156.87 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=99.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-----cchhh
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSK 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-----~l~~~ 279 (487)
..++|.+++++.+...+.. ..+|||+||||||||++|+++|+.++ .+|..+++. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4689999999988876633 35899999999999999999999884 455555553 22222
Q ss_pred ccCCcHHHHHHHHHHHHh-c--CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-------cCCCCcEEEE
Q 011400 280 WRGDSEKLIKVLFELARH-H--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVL 349 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~-~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~VlVI 349 (487)
+.+..... ...|..+.. . .++|||||||+.+.+ .+.+.|+..|+.- .......++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22211111 111221111 1 367999999986532 3455677777532 1111222457
Q ss_pred EEeCCCCc---ccHHHHhhccccccCCCCCH-HHHHHHHHHhCC
Q 011400 350 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 389 (487)
Q Consensus 350 atTn~p~~---Ld~aL~rRf~~~i~~~~Pd~-eeR~~IL~~~l~ 389 (487)
+|||.+.. ..+++++||...+.+++|+. +++..|++....
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 77876432 55799999988899999976 778899987653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=140.26 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=94.7
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhhc
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 280 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~~ 280 (487)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 358999999999988887775432 2346799999999999999999999874 689999998763321
Q ss_pred -----cCCcHHH-------HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------
Q 011400 281 -----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 340 (487)
Q Consensus 281 -----~g~se~~-------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------- 340 (487)
.|..... ....+.. ..+++|||||+|.+... ....|+..++.-.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1111000 0112222 23479999999988532 2334555555211
Q ss_pred CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHH----HHHHHHHhC
Q 011400 341 QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEA----RRAMFESLL 388 (487)
Q Consensus 341 ~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~ee----R~~IL~~~l 388 (487)
.....+.+|+|||.+ ..+.+++.+||.. +.+..|+..+ ...+++.++
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 112246688888875 2367899999954 3444444443 444444443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=145.36 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=119.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHH-hccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l-~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--------- 266 (487)
+.+.+++.+|++++|.+.+++.|...+ .. ...+. ++|+||+|+|||++++++++++..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 556778889999999999999888765 21 12234 999999999999999999996511
Q ss_pred --------------------cEEEEecccchhhccCCcHHHHHHHHHHHH--------------hcCCcEEEechhhhHH
Q 011400 267 --------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAII 312 (487)
Q Consensus 267 --------------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~--------------~~~p~IL~IDEiD~L~ 312 (487)
.++.++..+.. ......++..+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12222222110 001112344443332 2256799999999863
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
.. ..+.|+..++... ....+|.+|+.+..+.+++++|+ ..+.+++|+.++...+++..+....
T Consensus 148 ~~-------------~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 KD-------------AQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp HH-------------HHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HH-------------HHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 21 2334556665332 23567778899999999999999 6699999999999999998875544
Q ss_pred CC-C-CCCHHHHHHHhcCCc
Q 011400 393 GE-E-SLPYDLLVERTEGYS 410 (487)
Q Consensus 393 ~~-~-~~~l~~la~~t~G~s 410 (487)
.. . +..++.+++.+.|-.
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNL 230 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCH
T ss_pred CCCCcHHHHHHHHHHcCCCH
Confidence 33 2 233566777776643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=137.18 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=112.9
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~ 270 (487)
.+...+++.+|++++|.+.+++.|...+... ..+ +++|+||||||||++|+++|+.+. ..+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 3455567788999999999999998877431 122 499999999999999999999873 24667
Q ss_pred EecccchhhccCCcHHHHHHHHHHHHh------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 271 ISASSVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 271 v~~~~l~~~~~g~se~~l~~~f~~a~~------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+++++.. ....++..+..... ..+.|++|||+|.+... ..+.|+..++.. ..
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~ 139 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TK 139 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TT
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CC
Confidence 7665431 12233333332221 13579999999988432 234466666532 23
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
...+|.+||.+..+.+++++|+. .+.+..++.++..+++...+..
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHH
Confidence 35566788999999999999996 5888888888888888887743
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=162.08 Aligned_cols=207 Identities=24% Similarity=0.288 Sum_probs=143.1
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
+++|+|.+.+++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999999888543210 00111344689999999999999999999998 789999999876543
Q ss_pred ---------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------C
Q 011400 280 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 342 (487)
Q Consensus 280 ---------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 342 (487)
|+|..+ ...+....+...++||||||+|.+. ..+++.|+..++.-.- .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence 222221 1223344455556899999998763 2456778888874321 1
Q ss_pred CCcEEEEEEeCCC--------------------------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----
Q 011400 343 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 392 (487)
Q Consensus 343 ~~~VlVIatTn~p--------------------------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~---- 392 (487)
-..++||+|||.. ..+.++++.||+..+.+.+|+.++...|++.++....
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1357789999972 2356788899998899988999999999988775211
Q ss_pred ---C--C-CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011400 393 ---G--E-ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 393 ---~--~-~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
. . .+..++.|++..- .+..++|..+++.+...++.+.+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1122455666655 57788999999998888877654
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-15 Score=147.19 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=116.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc---
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 280 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~--- 280 (487)
++++|.+...+.+.+.+.... ..+.+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468899988888888775432 245689999999999999999999976 5789999998764321
Q ss_pred --cCC----cHH---HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCC
Q 011400 281 --RGD----SEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 343 (487)
Q Consensus 281 --~g~----se~---~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 343 (487)
.|. ... .....|..+. +++|||||+|.+... ....|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 111 000 1122344433 379999999988532 3344666666432 112
Q ss_pred CcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHH----HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 344 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 344 ~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR----~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
..+.||++||.+ ..+++.|..||. .+.+..|+..+| ..++++++........ .....++..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~-------~~~~~~s~~ 207 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNR-------KVVKGFTPQ 207 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT-------CCCCCBCHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc-------cCccCCCHH
Confidence 346788899876 236778888985 355555554444 3455554422110000 001234455
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhc
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
.+..+.+..|.+++|++.+.++.
T Consensus 208 a~~~L~~~~wpGnvReL~~~l~~ 230 (304)
T 1ojl_A 208 AMDLLIHYDWPGNIRELENAIER 230 (304)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 55555555555555555554443
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-15 Score=163.25 Aligned_cols=166 Identities=21% Similarity=0.235 Sum_probs=103.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecccchhhcc-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR- 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v----~~~~l~~~~~- 281 (487)
..|+|++.+|+.+...+..... ............+|||+||||||||++|+++|+.++..++.. ++.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~-~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP-KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC-EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCc-ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 5689999999887544422110 000001123345899999999999999999999987665543 2222222111
Q ss_pred ----CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEE
Q 011400 282 ----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 347 (487)
Q Consensus 282 ----g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~Vl 347 (487)
|..... ...+..+ ..+||||||+|.+... ..+.|+..|+.-. ..+..+.
T Consensus 374 ~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cccccccccc-CCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 111000 0112222 2379999999987432 2344667776321 1124577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
||+|||.+. .+++++++||+. .+..+.|+.+ ...|+++.+...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999999886 899999999974 4556777777 888888776543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=123.89 Aligned_cols=125 Identities=12% Similarity=0.128 Sum_probs=86.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
+++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57888888888888775432 244679999999999999999999987 77899 999887544
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC-------c
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 357 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~-------~ 357 (487)
......+..+. +++|||||+|.+... ....|+..+... ...+.+|++||.+. .
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~---~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQE---HRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHSS---SCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhhc---CCCEEEEEECCcCHHHHHHcCC
Confidence 22334455443 379999999988543 223355555422 22355778888752 3
Q ss_pred ccHHHHhhccc
Q 011400 358 LDAAMLRRLEK 368 (487)
Q Consensus 358 Ld~aL~rRf~~ 368 (487)
+.+.+..|+..
T Consensus 126 ~~~~L~~rl~~ 136 (145)
T 3n70_A 126 IIAELYYCFAM 136 (145)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHhcC
Confidence 66777777743
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-14 Score=127.18 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=84.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHH
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57898888888888875432 2346799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHH
Q 011400 288 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 362 (487)
Q Consensus 288 l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL 362 (487)
...++..+. +++|||||+|.+... ....|+..++... ...+.+|++||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 344555443 479999999988543 1223444444221 2335577777754 33 45566
Q ss_pred Hhhccc
Q 011400 363 LRRLEK 368 (487)
Q Consensus 363 ~rRf~~ 368 (487)
..|+..
T Consensus 129 ~~rl~~ 134 (143)
T 3co5_A 129 AGLFSE 134 (143)
T ss_dssp HHHSSS
T ss_pred HHHhcC
Confidence 677643
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=127.77 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=114.6
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------------
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------- 267 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------------- 267 (487)
-++++.+.|...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3566777777766431 345679999999999999999999988532
Q ss_pred -EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 268 -FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 268 -~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
++.++..+- ........++.+++.+.. ..+.|++|||+|.+... ..+.|+..++. .
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p 135 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---C
Confidence 333332210 011233456666666543 23579999999988432 24567788873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011400 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 343 ~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~d 413 (487)
+..+++|.+|+.++.+.+++++|+. .+.++.|+.++..++++... .. .+..++.++..+.|..+..
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHHHH
T ss_pred CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHH
Confidence 3456677788889999999999995 59999999999999998876 11 2223466777777655433
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=127.74 Aligned_cols=210 Identities=14% Similarity=0.082 Sum_probs=128.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHH-hccccCchhhcCCCCCCeeEEE--EcCCCChHHHHHHHHHHHh---------CCcEE
Q 011400 202 PDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFF 269 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l-~~~l~~~~~~~~~~~~~~gvLL--~GppGtGKT~LAraiA~el---------~~~~i 269 (487)
|....++++|.+...+.|.+.+ ....... ...+..++| +||||+|||++++.+++++ +..++
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3344588999999999998877 4332110 013467999 9999999999999999876 45678
Q ss_pred EEecccchhh------c----------cCCc-HHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 270 NISASSVVSK------W----------RGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 270 ~v~~~~l~~~------~----------~g~s-e~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
.+++...... . .+.. ......+..... ...|.||+|||+|.+...... ....+..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~ 163 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYT 163 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHH
Confidence 8886432110 0 0111 122233333322 245789999999998642100 0123333
Q ss_pred HHHHhcCCcCCC--CcEEEEEEeCCCC---ccc---HHHHhhccccccCCCCCHHHHHHHHHHhCCCCCC---CCCCCHH
Q 011400 332 LLIQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYD 400 (487)
Q Consensus 332 Ll~~ld~~~~~~--~~VlVIatTn~p~---~Ld---~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~---~~~~~l~ 400 (487)
++..++...... ..+.+|++++.+. .++ +.+.+++...+.+++++.++..+++...+..... ..+..+.
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 444444332112 5577887887664 344 6677787666899999999999999876532211 1122356
Q ss_pred HHHHHhc------CCcHHHHHHHHHHHHhHH
Q 011400 401 LLVERTE------GYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 401 ~la~~t~------G~sg~dI~~L~~~A~~~a 425 (487)
.+++.+. |. +..+..+++.++..+
T Consensus 244 ~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 244 LISDVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 6777887 65 456667777665443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-12 Score=137.47 Aligned_cols=52 Identities=35% Similarity=0.521 Sum_probs=44.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..++..|++++|.+.+++.+...+. ...+++|+||||||||++|+++|..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4566779999999999998887773 235899999999999999999999874
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=121.50 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccchhhccCCc
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------~~~~i~v~~~~l~~~~~g~s 284 (487)
|++++.+.|...+... . ..++|||||||+|||++|+++|+.+ ...++.+++.+- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 5677788888877442 1 4589999999999999999999974 346777765420 123
Q ss_pred HHHHHHHHHHHHhcC----CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 285 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 285 e~~l~~~f~~a~~~~----p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
-..++.+++.+.... ..|++|||+|.+... ..+.|+..++. .+..+++|.+|+.+..+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 345677777765432 359999999988432 24568888873 3344566677788999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 361 AMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 361 aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
++++| .+.++.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 78999999999998888876
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=150.32 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=108.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccC----------chhhcC-----------------C--CCCCeeEEEEcCCCCh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-----------------L--LSPWKGILLFGPPGTG 252 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~----------~~~~~~-----------------~--~~~~~gvLL~GppGtG 252 (487)
+.++|+|+.|++++|+.+.+.+.+++.+ ++.+.. . .+..+.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4478999999999999999999999844 334433 1 2233449999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEEecccch------------hhccCC----cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 253 KTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 253 KT~LAraiA~el---~~~~i~v~~~~l~------------~~~~g~----se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
||+||++++.+. +-+.+.|+..+.. ++|.++ +++.++.++..|+...|++||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999977 4566666655533 566677 899999999999999999999999999998
Q ss_pred hhc---cc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 314 QRG---EA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 314 ~r~---~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.+. +. ..+.....+++++++..+++.....+ |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 843 11 11235667788999999998755544 4455 67665
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=101.66 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 011400 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 455 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD 455 (487)
|.++|.+||+.++++.+...+++++.||+.|+||||+||.++|++|++.++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999888889999999999999999999999999999999872 13599999
Q ss_pred HHHHHhccCCChhhh--HHHHHHHH
Q 011400 456 VEIALKNTRPSAHLH--AHRYEKFN 478 (487)
Q Consensus 456 ~~~AL~~~~ps~~~~--~~~y~~~~ 478 (487)
|..|++++.++.... ...|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 999999999998753 68888886
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-11 Score=99.63 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=70.7
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCC
Q 011400 371 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 450 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~ 450 (487)
+-.+||.++|.+||+.++++.....+++++.||+.|+||||+||.++|++|++.++++. ...
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 45789999999999999999888888999999999999999999999999999999862 145
Q ss_pred CCHHHHHHHHhccCCC
Q 011400 451 IRPEDVEIALKNTRPS 466 (487)
Q Consensus 451 It~eD~~~AL~~~~ps 466 (487)
|+.+||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999999875
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=98.06 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 011400 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 455 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD 455 (487)
|.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|+..++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999998887788999999999999999999999999999987742 14599999
Q ss_pred HHHHHhccCCChhhhHHHH
Q 011400 456 VEIALKNTRPSAHLHAHRY 474 (487)
Q Consensus 456 ~~~AL~~~~ps~~~~~~~y 474 (487)
|..|+++++|+.+.++..|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999998545555
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-11 Score=94.23 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 452 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It 452 (487)
|+|+.++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|+..++++. ...|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999888788999999999999999999999999999999851 14599
Q ss_pred HHHHHHHHhccCC
Q 011400 453 PEDVEIALKNTRP 465 (487)
Q Consensus 453 ~eD~~~AL~~~~p 465 (487)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=105.44 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=62.1
Q ss_pred CCCCCCCcccC----cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 011400 201 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~G----~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~ 272 (487)
....+|+++++ .+.+.+.+.+++.... ..++.+++|+||||||||+|++++++.+ |..++.++
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45567888886 3344445554443221 1345789999999999999999999987 66777777
Q ss_pred cccchhhccCCcHHH-HHHHHHHHHhcCCcEEEechhhhH
Q 011400 273 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 273 ~~~l~~~~~g~se~~-l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
..++...+....... ...++.. ...|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 766654322110000 0011111 235789999999743
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-10 Score=115.03 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=132.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~--- 279 (487)
++.++|.....+++.+.+.... .....|+|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4578888777777776664321 2345699999999999999999998774 78999999876432
Q ss_pred ----------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cC
Q 011400 280 ----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 341 (487)
Q Consensus 280 ----------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 341 (487)
+.|.... ....|+.|.. ++||||||+.+... ++..|+..++.- ..
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1111110 1223444433 79999999988533 334455555421 11
Q ss_pred CCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHH----HHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 342 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~----~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
....+.||++||.. ..+.+.+..|+.. +.+..|...+|. .++++++....... .....+++
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~-------~~~~~~~~ 340 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKY-------AKEVEGFT 340 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHT-------TCCCCEEC
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHc-------CCCCCCCC
Confidence 11246788999874 2355667767743 556666665554 34444432211000 00123577
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...+..+....|.+++|++.+.++........ ..|+.+|+-..++
T Consensus 341 ~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~------~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 341 KSAQELLLSYPWYGNVRELKNVIERAVLFSEG------KFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS------SEECHHHHHHHC-
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC------CcCcHHHCcHhhh
Confidence 88888888899999999888877765443221 3488888865543
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=141.28 Aligned_cols=139 Identities=19% Similarity=0.289 Sum_probs=92.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH-HhCCcEEEEecccchhhccCCcHHHHHHHHHHHH---------------hcCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 302 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~-el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~---------------~~~p~I 302 (487)
..++|||+||||||||++|+.+.. ..+..++.++++...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 347899999999999999955544 4477888888766532 233444444321 112369
Q ss_pred EEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC-------CcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011400 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 370 (487)
Q Consensus 303 L~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~VlVIatTn~p~-----~Ld~aL~rRf~~~i 370 (487)
|||||+|....++.... ...+++.++++ ..+..... ..+.+|+|+|+|. .++++++||| .++
T Consensus 1340 lFiDEinmp~~d~yg~q----~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ----NVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCC----HHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCch----hHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 99999987443321111 12233333332 12221111 2478999999994 7999999999 669
Q ss_pred cCCCCCHHHHHHHHHHhCC
Q 011400 371 LVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~ 389 (487)
.++.|+.+++..|+..++.
T Consensus 1414 ~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.3e-10 Score=98.97 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=68.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
+...++|+||+|+|||+|+++++..+ |...++++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 34679999999999999999999988 677888887776533 112357899999998753221
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC-CCCccc--HHHHhhccccccCCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 374 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn-~p~~Ld--~aL~rRf~~~i~~~~ 374 (487)
... +...++.....+..++|+ |++ .|..+. +++.+|+..-..+.+
T Consensus 100 ----------~~~---l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------QAL---LFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----------HHH---HHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----------HHH---HHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 112 223332222222223444 555 454332 899999966554443
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.8e-09 Score=107.75 Aligned_cols=198 Identities=21% Similarity=0.233 Sum_probs=123.0
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchhhc---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKW--- 280 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~~~--- 280 (487)
-.+++|......++.+.+.... .....++++|++||||+++|+++....+.. |+.++|+.+....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 3568888887777776654321 233469999999999999999999987543 9999998764221
Q ss_pred ----------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CC
Q 011400 281 ----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 342 (487)
Q Consensus 281 ----------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~ 342 (487)
.|.... ....|+.+.. ++||||||+.+... ++..|+..++.-. ..
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBE
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcce
Confidence 111110 1123444433 79999999988533 3344666665221 01
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHH----HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 343 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 343 ~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR----~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
.-.+.+|++||.. ..+.+.|..|+.. +.+.+|...+| ..++.+++...... ......+++.
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 332 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAEYFLKKFAKE-------YKKNCFELSE 332 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHHHHHHHHHHH-------TTCCCCCBCH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCH
Confidence 1236678888864 1245577778744 45555555444 34444444221100 0011245788
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 412 SDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
..+..|.+..|.+++|++.+.++....
T Consensus 333 ~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 333 ETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 889999999999999998888776543
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=103.00 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=112.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch---
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--- 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~--- 277 (487)
.+....+.++|.+...+.|.+ +.. ..++|+||+|+|||+|++.++++.+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344556789999998888887 521 3799999999999999999999987777888765420
Q ss_pred --h--h-------------------------c-----cC---C------cHHHHHHHHHHHHhc--CCcEEEechhhhHH
Q 011400 278 --S--K-------------------------W-----RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAII 312 (487)
Q Consensus 278 --~--~-------------------------~-----~g---~------se~~l~~~f~~a~~~--~p~IL~IDEiD~L~ 312 (487)
+ . . .+ . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 0 0 00 0 011233344444332 38899999999886
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc---------HHHHhhccccccCCCCCHHHHHHH
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAM 383 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld---------~aL~rRf~~~i~~~~Pd~eeR~~I 383 (487)
...... . ...+..+ ++.. ..+.+|.+++....+. ..+..|+...+.+++.+.++..++
T Consensus 151 ~~~~~~-----~-~~~l~~~---~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 151 KLRGVN-----L-LPALAYA---YDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp GCTTCC-----C-HHHHHHH---HHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccCchh-----H-HHHHHHH---HHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 420000 0 1111222 2211 2355555665432111 123335556688999999999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 384 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 384 L~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
+...+.......+ +...+...+.|+.. .+..++.
T Consensus 218 l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 9876643222222 34778888888754 4555544
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-08 Score=99.56 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=110.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch----
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 277 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~---- 277 (487)
|...-+.++|.+...+.|.+.+.. .+.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 445567899999999999887742 14799999999999999999999876 6666654321
Q ss_pred --------h---hcc-------------------------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchh
Q 011400 278 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 278 --------~---~~~-------------------------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
. ... ......+..+...+....|.+|+|||++.+..... ..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~ 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RG 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TT
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cc
Confidence 0 000 01112222222223323489999999998853100 00
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc---------HHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld---------~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
. ..+...|...++.. ..+.+|.++.....+. ..+..|+...+.+++.+.++-.+++...+....
T Consensus 148 ~---~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 G---KELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp T---HHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h---hhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0 11222222222211 2344555554321111 123335555788898999999999987664333
Q ss_pred CC-CCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 393 GE-ESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 393 ~~-~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
.. ....+..+...+.|+.. -+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 22 12235667788888653 4555543
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-09 Score=111.73 Aligned_cols=147 Identities=19% Similarity=0.135 Sum_probs=84.2
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHH-HHHhCCcEEEEec-c---cchhhccCC
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRGD 283 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LArai-A~el~~~~i~v~~-~---~l~~~~~g~ 283 (487)
|+|++.+|+.|.-.+...-.. ....-+|||.|+||| ||++|+++ ++.+....+.... + .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999998888766442111 122337999999999 99999999 7765443332111 1 111000000
Q ss_pred cHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------CCCCcEEEEEEeCCCC
Q 011400 284 SEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLPW 356 (487)
Q Consensus 284 se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------~~~~~VlVIatTn~p~ 356 (487)
+.. .-...+..|. .+++|||||+.+..+ .+..|++.|+.-. .-+..+.||+|+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 000 0001122222 279999999987533 3444666665211 2234578999999864
Q ss_pred -----------cccHHHHhhcccc-ccCCCCCHHH
Q 011400 357 -----------ELDAAMLRRLEKR-ILVPLPDTEA 379 (487)
Q Consensus 357 -----------~Ld~aL~rRf~~~-i~~~~Pd~ee 379 (487)
.|++++++||+.. +.++.|+.++
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 7899999999764 4456665544
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-09 Score=87.00 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 011400 378 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 457 (487)
Q Consensus 378 eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~ 457 (487)
++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|++.++++. ...|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4789999999988887778899999999999999999999999999999861 1359999999
Q ss_pred HHHhccC-CChhhh
Q 011400 458 IALKNTR-PSAHLH 470 (487)
Q Consensus 458 ~AL~~~~-ps~~~~ 470 (487)
.|++++. |+.++.
T Consensus 63 ~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 63 EAYATQVKTDNTVD 76 (82)
T ss_dssp HHHHTTCC------
T ss_pred HHHHHHHcCcCChH
Confidence 9999994 666653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-09 Score=99.23 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=61.3
Q ss_pred CCCCCcccCcHH----HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 203 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 203 ~~~~~di~G~e~----~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
..+|+++++... +.+.+..++... +. ...+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 457899987553 333444443221 00 0123789999999999999999999988 67888888877
Q ss_pred chhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 276 VVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 276 l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
+......... ..+..++..... +.+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6543321110 001222333222 3699999997643
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.4e-09 Score=97.37 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=78.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh--------C-CcEEEEecccchhhcc----------CC-----cHHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC--------K-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el--------~-~~~i~v~~~~l~~~~~----------g~-----se~~l~~~f~~a~ 296 (487)
.-.|++|+||||||++|..++... | .+++..+..++..... .. ....+..++.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 357899999999999998875442 4 6777677665543221 11 11222222211 2
Q ss_pred hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCC
Q 011400 297 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd 376 (487)
...++||+|||++.+.+.+.+.... ..++..+.... ...+-||.+++.+..++.++++|+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~~r--~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNTHR--HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGGTT--TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchh--------HHHHHHHHhcC--cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 2346899999999997654221111 01444454322 2334567788889999999999999988887764
Q ss_pred H
Q 011400 377 T 377 (487)
Q Consensus 377 ~ 377 (487)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-08 Score=102.33 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=66.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
.+.+.++|+||||||||+||.++|.+.+.+ |+.+...+..+.+....+..+..+.+...... +|+||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 345668999999999999999999876544 55552233334444455666666666665544 99999999986543
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 361 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~a 361 (487)
..... .....+...+++..+.++....+ +.+|+++| +...+++
T Consensus 199 ~~~s~-~G~v~~~lrqlL~~L~~~~k~~g-vtVIlttn-p~s~dea 241 (331)
T 2vhj_A 199 GGNTT-SGGISRGAFDLLSDIGAMAASRG-CVVIASLN-PTSNDDK 241 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHT-CEEEEECC-CSSCSSS
T ss_pred ccccc-cchHHHHHHHHHHHHHHHHhhCC-CEEEEEeC-Ccccchh
Confidence 22100 00001222333344433322222 45667777 4444444
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-08 Score=99.05 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=59.2
Q ss_pred CCCCcccCcH----HHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 011400 204 VKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 275 (487)
Q Consensus 204 ~~~~di~G~e----~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~ 275 (487)
.+|+++.+.. .+.+.+.+++... +. .+..+++|+||||||||+||+++|+++. .+++.+++.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~---~~------~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY---PS------AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC---SC------SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc---cc------cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 5789988643 2333333444221 10 1257899999999999999999998664 7888888877
Q ss_pred chhhccCCc-HHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 276 VVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 276 l~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
+........ ......++.... .+.+|+|||++..
T Consensus 192 l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 192 FAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 655433211 111122222222 3469999999654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.55 E-value=8.3e-08 Score=90.33 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
+..+++||+||||||||++|.++|+.+...++.+..+.. ..+ +..+ ....|++|||+|.-.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh-----
Confidence 334689999999999999999999998654433211100 000 1111 113599999998421
Q ss_pred cchhhHHHHHHHHHHHHHhcCCc------CCC----CcEEEEEEeCCC---CcccHHHHhhccccccCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLT------QSD----ELVFVLAATNLP---WELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~------~~~----~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~ 374 (487)
.+.+...+...+++.. .+. ....+|.|||.+ +..-+.|.+|+. .+.++.
T Consensus 117 -------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~ 178 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPN 178 (212)
T ss_dssp -------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCS
T ss_pred -------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCC
Confidence 1222234555666641 001 112356688875 223367888984 355553
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-07 Score=113.69 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=91.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
..++++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+...+ +.+++||++.+...--
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH---
Confidence 367999999999999999999999999999999987643 345566776666554 7999999998754311
Q ss_pred hhhHHHHHHHHHHHHHhcC----Cc------CCCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHHH
Q 011400 320 SEHEASRRLKTELLIQMDG----LT------QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~ld~----~~------~~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~ 385 (487)
+ ...+.+..+...+.. +. .-.....|++|.|.. ..|++++++|| +.+.+..||.+...+|+-
T Consensus 715 --s-~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 715 --S-AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp --H-HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred --H-HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 1 111112222222211 00 112335567788743 46999999999 559999999988888753
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=105.49 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=77.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----hc------------cCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~~------------~g~se~~l~~~f~~a~~ 297 (487)
+.++++++|+||||||||+||.+++.+. |.....++..+... .. +...++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4678899999999999999999998876 55666666554321 11 12456677777778888
Q ss_pred cCCcEEEechhhhHHhhhc---ccchhhH-HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 298 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~~r~---~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.+|++|+||+++.+.+... +....+. ...++.++++..|.+...... +.|| +||.+
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 9999999999998876431 1111111 234566777777776654443 4344 55543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=107.43 Aligned_cols=139 Identities=20% Similarity=0.293 Sum_probs=86.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccchhhccCCcHHHHHHHHHHH----H----h--------cCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----R----H--------HAPS 301 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a----~----~--------~~p~ 301 (487)
..++|||+||||||||++++.....+ +.+++.++++.-. +...+...++.. + . .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 34689999999999998876655544 6667788876543 233444444321 0 0 1124
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC------CCCcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------SDELVFVLAATNLPW-----ELDAAMLRRLEKRI 370 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i 370 (487)
|+||||++.-..+.-+.. ..-.++.+++..-.-... .-..+.+|+|+|.|. .++++++|||.. +
T Consensus 1377 VlFiDDiNmp~~D~yGtQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-L 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-E
T ss_pred EEEecccCCCCccccccc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-E
Confidence 999999986433221111 112333333332110111 113477899999883 599999999955 9
Q ss_pred cCCCCCHHHHHHHHHHhC
Q 011400 371 LVPLPDTEARRAMFESLL 388 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l 388 (487)
.++.|+.++...|+..++
T Consensus 1452 ~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999976543
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=83.83 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
++.++++|+||||||||++|++||+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=73.55 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886544
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-05 Score=98.55 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+...+ +-.++|||+.+-..--+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCHHHHHH--
Confidence 46789999999999999999999999999999987542 345566666655544 799999999874321100
Q ss_pred hhHHHHHHHHHHHHH-----hc-CC-cCCCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 321 EHEASRRLKTELLIQ-----MD-GL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~-----ld-~~-~~~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
-......+...+... +. |. -.-.....|++|.|.- ..|++.+++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 000001111111111 01 11 0111235567777742 46999999999 4499999999888887543
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.5e-05 Score=77.51 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDA 310 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~-~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~ 310 (487)
..+.+||+||+|+||++.++.+++.+ +. ++..+... +. ..++.+.+.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998866 32 22222111 10 123334433332 2346999999987
Q ss_pred -HHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-----CCcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 311 -IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 311 -L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-----p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
+... ..+.|+..++.. ....++|+++++. ...+.+++.+|+. .+.+..++..+....+
T Consensus 88 kl~~~-------------~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 88 GPNAA-------------INEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWV 151 (343)
T ss_dssp CCCTT-------------HHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHH
T ss_pred CCChH-------------HHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHH
Confidence 5321 234477777632 3344555554432 2357778888984 4888888888888888
Q ss_pred HHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 385 ESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 385 ~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+..+...+..-+ ..++.++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 888765543322 224445555544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=89.07 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh-hh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 315 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~-~r 315 (487)
+.++..++|+||||+||||++++++..++..++.+....- .....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4667789999999999999999999998776655332221 0011111 122346789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP 373 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~ 373 (487)
.-....... ....+...++|. +.|++++|+++.+ +++++ |++..+...
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 110101110 123344555542 3467789999888 45555 565555443
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00018 Score=77.38 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=95.5
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH-------hCCcEEEEecccc
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 276 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e-------l~~~~i~v~~~~l 276 (487)
.....++|.+...+.|.+.+... ....+-|+|+||+|+|||+||+.+++. +...++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34577999999999999987431 023456899999999999999999652 2122333332221
Q ss_pred -----hhhc----------------cCCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 277 -----VSKW----------------RGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 277 -----~~~~----------------~g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
.... .... +.....+...... ..|.+|+|||++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 0000 0011 1222222222222 267899999997421 11
Q ss_pred HHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccC---CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 334 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV---PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~---~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
..+ .....||.||..+..... +. ...+.+ ...+.++-.+++...+.............+++.+.|..
T Consensus 252 ~~l------~~~~~ilvTsR~~~~~~~-~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 KAF------DSQCQILLTTRDKSVTDS-VM---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HTT------CSSCEEEEEESCGGGGTT-CC---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHh------cCCCeEEEECCCcHHHHh-cC---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 112 122345667765432211 00 112222 35688888888888764322122334677888888865
Q ss_pred HHHHHHH
Q 011400 411 GSDIRLV 417 (487)
Q Consensus 411 g~dI~~L 417 (487)
- .|..+
T Consensus 322 L-al~~~ 327 (591)
T 1z6t_A 322 L-VVSLI 327 (591)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 34443
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6.3e-05 Score=79.03 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=84.6
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE---------eC---CCCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat---------Tn---~p~~Ld~aL~rRf~ 367 (487)
|.|+||||+|.|. ....+.|+..++.. ...++|+++ ++ .|..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999884 23566788888733 223545454 22 16779999999997
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t-~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~ 445 (487)
. +.+++|+.++..++++..+....... +..+..++..+ .| +++..-.+++.|...|..+
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~----------------- 420 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN----------------- 420 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT-----------------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc-----------------
Confidence 7 69999999999999998764333221 12244566665 44 4455555555554333221
Q ss_pred CCCCCCCHHHHHHHHhccC
Q 011400 446 PQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 446 ~~~~~It~eD~~~AL~~~~ 464 (487)
....|+.+|+.+|+..+-
T Consensus 421 -~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 421 -GKDSIEKEHVEEISELFY 438 (456)
T ss_dssp -TCSSBCHHHHHHHHHHSC
T ss_pred -CCCccCHHHHHHHHHHhc
Confidence 113599999999998653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=66.63 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+...++|.||||+|||+|++.++... +..++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3455678999999999999999999654 455555543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=66.69 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+.+..-++|+||||+|||++++.++...+.++++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 456677999999999999999999986677777777654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00047 Score=79.96 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=100.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
.+.....++|.+...++|.+.+...- ...+-|.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 44456779999999999999874321 234568899999999999999998752 1223344433
Q ss_pred cchh------------h---------ccCCcHHHHHHHHHHHHhc--CCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 275 SVVS------------K---------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 275 ~l~~------------~---------~~g~se~~l~~~f~~a~~~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
.... . ........+...+...... ++.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 0011122222223222222 36899999997431
Q ss_pred HHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCC-CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 332 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 332 Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~-Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
.++.+. . ...||.||..+..... + ......+.++. .+.++-.+++................++++.+.|..
T Consensus 250 ---~~~~~~-~--~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 ---VLKAFD-N--QCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp ---HHTTTC-S--SCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred ---HHHhhc-C--CCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 122221 1 2345667776533211 0 11234466665 788888888887764333222333667888888764
Q ss_pred HHHHHH
Q 011400 411 GSDIRL 416 (487)
Q Consensus 411 g~dI~~ 416 (487)
-.|..
T Consensus 322 -Lal~~ 326 (1249)
T 3sfz_A 322 -LVVSL 326 (1249)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 33443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=9e-05 Score=74.29 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccch-hh-------ccC----------------C
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D 283 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~-~~-------~~g----------------~ 283 (487)
+++..-++|+||||+|||+++..+|... +...++++..... .. ..| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4566779999999999999999999875 4567777765421 00 000 1
Q ss_pred cH---HHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 284 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 284 se---~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
.+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 123334444455 67899999999998754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=74.69 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~~ 297 (487)
+.+..-++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4566779999999999999999999875 566777776543211 011223333333333445
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..|.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999988875
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.69 E-value=6.3e-05 Score=71.07 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=49.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecccchh--------hccC---------------Cc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVVS--------KWRG---------------DS 284 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e--l-------~~~~i~v~~~~l~~--------~~~g---------------~s 284 (487)
+.+..-++|+||||+|||++++.++.. . +...++++...... ...+ ..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456667999999999999999999985 2 45677776654100 0001 01
Q ss_pred -HH---HHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 285 -EK---LIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 285 -e~---~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
.. .+..+........|.+|+||++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122233444556789999999988764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=72.58 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh-h-------ccC----------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG---------------- 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~-~-------~~g---------------- 282 (487)
.+.+..-++|+||||+|||+++..+|... +...++++...... . ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 35666778999999999999999999873 45677777654211 0 000
Q ss_pred CcH---HHHHHHHHHHHh--cCCcEEEechhhhHHhh
Q 011400 283 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ~se---~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~ 314 (487)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 122223344445 67889999999998754
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=73.76 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----c------------CCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----~------------g~se~~l~~~f~~a~~ 297 (487)
+++..-++|+||||+|||+||..++... +.++++++...-.... . ...+..+..+....+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 5677777765422111 0 1122333333333344
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..+.+|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 6789999999999874
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=67.50 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566679999999999999999999854
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=73.37 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=51.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----ccC------------CcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----~~g------------~se~~l~~~f~~a~~ 297 (487)
+.+..-++|+||||+|||+|+..++... +..+++++....... ..| ..+..+..+...++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 566777765432211 011 122333333333445
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6789999999999874
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.8e-05 Score=68.01 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..|+|.|+||+||||+++.+++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 468999999999999999999999988887765443
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.5e-05 Score=69.20 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=23.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997666654 5555444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00028 Score=71.85 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=51.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----cC-----------CcHHHHHHHHH-HHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----~g-----------~se~~l~~~f~-~a~~ 297 (487)
+++..-++|+||||+|||+||..++... +.++++++........ .| .....+..++. ..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 5677888764322110 00 11222233332 3345
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00021 Score=68.04 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------chhhccCCc-----HHHHHHHHHHHHh----cCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 300 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~-------l~~~~~g~s-----e~~l~~~f~~a~~----~~p 300 (487)
..-++++||+|+|||+++..++..+ +..++.+.... +.+. .|.. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457889999999999999888766 55666664221 1111 1100 0011234444444 347
Q ss_pred cEEEechhhhH
Q 011400 301 STIFLDEIDAI 311 (487)
Q Consensus 301 ~IL~IDEiD~L 311 (487)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.43 E-value=8e-05 Score=67.62 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+.|+|.|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999988764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00029 Score=72.89 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchhh--------ccCC---------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK--------WRGD--------------- 283 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~~--------~~g~--------------- 283 (487)
.+.+..-++|+||||+|||+|++.++-.. +...++++..+.... ..|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 35666779999999999999999876433 234677766442110 0010
Q ss_pred -c---HHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 284 -S---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 284 -s---e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
. ...+..+...+....|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1 112223334444567899999999887653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00038 Score=84.27 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----------------CCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~----------------g~se~~l~~~f~~a~ 296 (487)
++++...++|+||||||||+||.+++.+. |.+.++++..+...... ...+...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778899999999999999999998765 77788888766533221 112223333333445
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999998554
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00091 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=35.5
Q ss_pred hhcCCCCCCCCccc-CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 197 IIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 197 ~~~~~~~~~~~di~-G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+...+.+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34455667788775 555555555555432 12379999999999999999999877
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00038 Score=69.42 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=51.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEecccch-hh----c---cC------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV-SK----W---RG------ 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------------~----~~~i~v~~~~l~-~~----~---~g------ 282 (487)
.+++..-++|+||||+|||++|..+|... | ..+++++...-. .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34566779999999999999999999753 2 467777765421 00 0 00
Q ss_pred ----------CcH---HHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 283 ----------DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ----------~se---~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 111 122233344444 56789999999998753
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=67.81 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+...++|.||||+||||+++.+|+.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3456799999999999999999999999887654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00056 Score=69.35 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=31.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISASS 275 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~~~~ 275 (487)
+.+..-+.|+||||+|||+|++.++.... -..++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56667799999999999999999998762 3557776543
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0023 Score=68.57 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=90.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEecccc-----h
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTTF---FNISASSV-----V 277 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~----el~~~~---i~v~~~~l-----~ 277 (487)
+|.+..+++|.+.+...- ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999999999884320 02346788999999999999999997 232221 22332221 0
Q ss_pred -------hhcc------------CCcHHHHHHHHHH-HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 278 -------SKWR------------GDSEKLIKVLFEL-ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 278 -------~~~~------------g~se~~l~~~f~~-a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ......+...+.. ....+..+|+||+++.... + .+...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--------------~--~~~~~-- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--------------I--RWAQE-- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--------------H--HHHHH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--------------h--ccccc--
Confidence 0000 0011122222332 2332368999999975310 0 11110
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC----HHHHHHHhcCCcHHH
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP----YDLLVERTEGYSGSD 413 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~----l~~la~~t~G~sg~d 413 (487)
.+ ..||.||....... .. ......+.++..+.++-.+++......... ... ...+++.+.|.. -.
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlP-LA 332 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-AA-SQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNP-AT 332 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-GC-CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH-HH
T ss_pred ----CC--CEEEEEcCCHHHHH-Hc-CCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCCh-HH
Confidence 22 23556776532211 00 012245778888999999999988533221 112 345667777654 33
Q ss_pred HHH
Q 011400 414 IRL 416 (487)
Q Consensus 414 I~~ 416 (487)
|..
T Consensus 333 l~~ 335 (549)
T 2a5y_B 333 LMM 335 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0017 Score=61.19 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.||||+|||+++..++... +...++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4566779999999999999998887654 556666654
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0022 Score=68.93 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=51.5
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
.+|+|||+..+..... ......+..+.. ..+.-.|.+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~------~~~~~~L~~Iar-----~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------KKVEELIARIAQ-----KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC------HHHHHHHHHHHH-----HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh------HHHHHHHHHHHH-----HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998875321 111122222222 12344578888999997 7999999999888999999988
Q ss_pred HHHHHHH
Q 011400 379 ARRAMFE 385 (487)
Q Consensus 379 eR~~IL~ 385 (487)
+...|+-
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887774
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00094 Score=64.21 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445679999999999999999999999877777776655
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0054 Score=64.04 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---------
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------- 279 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------- 279 (487)
.+.+++.+.+.+...+..+......-.++.-+++.|++|+||||++..+|..+ |..+..+++......
T Consensus 72 ~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 72 KEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 34455555555544332211111111346778999999999999999999876 666666665432110
Q ss_pred -----------ccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 280 -----------WRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 280 -----------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
........+...+..++...+.+++||..-
T Consensus 152 ~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp GGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 011233445666777777778999999874
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00021 Score=63.61 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876554
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=64.82 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999877654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=64.13 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 456789999999999999999999999877653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.002 Score=64.16 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-------c-------------cCCcHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-------W-------------RGDSEKLIKVLFEL 294 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~-------~-------------~g~se~~l~~~f~~ 294 (487)
.++.-++|.||+|+||||++..+|..+ +..+..+++...... | .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999876 455555544221100 0 01122222334555
Q ss_pred HHhcCCcEEEechhh
Q 011400 295 ARHHAPSTIFLDEID 309 (487)
Q Consensus 295 a~~~~p~IL~IDEiD 309 (487)
+....|.+++||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 566778999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=64.85 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887654
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=63.43 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999988764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=63.48 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.++|.||||+||||+++.+|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987765
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00058 Score=67.25 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.+..++|.||||+||||+++.++.+++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 456789999999999999999999986566777764443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00036 Score=62.40 Aligned_cols=30 Identities=30% Similarity=0.750 Sum_probs=26.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.|.||+|+||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999875543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.004 Score=57.88 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc---------cchhhcc-------------CC----cHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------GD----SEKLIKVL 291 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~---------~l~~~~~-------------g~----se~~l~~~ 291 (487)
..|++|+++|.||||+|-++|-.. |.++..+... .+..... .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358999999999999999998866 7777666321 1222210 00 12333444
Q ss_pred HHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcc
Q 011400 292 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 367 (487)
Q Consensus 292 f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~ 367 (487)
+..++. ..+.+|+|||+-....-.- .+ ...++..+. .+....-||.|+|.+ ++.|...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~-------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP-------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC-------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC-------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 554444 3578999999976543211 01 112445554 344445577788864 567776555
Q ss_pred ccc
Q 011400 368 KRI 370 (487)
Q Consensus 368 ~~i 370 (487)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 443
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=66.26 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=48.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhh----ccC-----------CcHHHH-HHHHHH-
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WRG-----------DSEKLI-KVLFEL- 294 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~----~~g-----------~se~~l-~~~f~~- 294 (487)
+.+. -++|+||||+|||+|+-.++.+. +..+++++..+-... ..| .+...+ -.+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3444 58999999999999988876654 567788876543211 001 111222 222222
Q ss_pred --HHhcCCcEEEechhhhHHh
Q 011400 295 --ARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 295 --a~~~~p~IL~IDEiD~L~~ 313 (487)
.+...|.+|+||-+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2456799999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=64.54 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH-hCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e-l~~~~i~v 271 (487)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 68766554
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=63.68 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+.-|+|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999977654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=64.50 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999886654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=63.72 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 455678999999999999999999987777777765543
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=62.74 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=26.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..|++.|+||+|||+++-.+|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666654444
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00078 Score=80.63 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=52.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----hccC------------CcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~~~g------------~se~~l~~~f~~a~ 296 (487)
.+.++..++|+||||+|||+||..+|..+ +.++.+++...... ...| ..+..+..+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35677889999999999999999998876 45777777654331 1111 11222222222233
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=63.63 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
++.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999876654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0055 Score=57.59 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccchhhc-------------------------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSKW------------------------------- 280 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~e----l~~~~i~v~~~~l~~~~------------------------------- 280 (487)
++++..-++|+|+||+|||++|..+|.. .+.++++++...-....
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 3456677999999999999999887653 25667666543211000
Q ss_pred -----------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 281 -----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 281 -----------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
.......+..+........+.++++|.+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 0001223344455566678899999999988654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00058 Score=73.91 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=25.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
..++|.||||||||+++.+++..+ +.++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 568999999999999999998865 5555544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.008 Score=63.94 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=49.3
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHHH
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 379 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~ee 379 (487)
+|+|||+..+.... ......++..+... .+.-.+.+|.+|.+|. .++..+++.|...+.+...+..+
T Consensus 300 vlvIDE~~~ll~~~------~~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMTV------GKKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHHH------HHHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhhh------hHHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 89999998876421 01111222222221 1222466778898886 58999999998889999999999
Q ss_pred HHHHHHH
Q 011400 380 RRAMFES 386 (487)
Q Consensus 380 R~~IL~~ 386 (487)
.+.++..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8888754
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=63.43 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e---l~~~~i~v~~~~l~ 277 (487)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 356899999999999999999998 68888766655443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=67.07 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
-++|.|||||||||+|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887664
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00032 Score=62.09 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
-|+|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888887654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00052 Score=64.24 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+|+.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45699999999999999999999999876554
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=69.90 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+..++|.||+|+|||++++.+|+.++..++.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 356899999999999999999999998888886543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=62.37 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=26.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999876544
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00051 Score=61.27 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987665
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0032 Score=56.69 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.3
Q ss_pred CCeeEEEEcCCCChHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKA 259 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAra 259 (487)
++.-+.|.||+|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445689999999999999994
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00048 Score=61.71 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=22.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHH-HhCCc
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT-ECKTT 267 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~-el~~~ 267 (487)
.-|+|.|+||+||||+++.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4689999999999999999998 45543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00055 Score=65.59 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
++..|+|.||||+||||+++.+++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 556799999999999999999999998766654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0005 Score=62.78 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34699999999999999999999999665543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00044 Score=62.34 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.-|+|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998876
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=64.97 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45699999999999999999999998776654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00047 Score=64.24 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998876655
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00071 Score=62.37 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=27.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45699999999999999999999998776653
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0008 Score=60.81 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999766554
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0005 Score=63.98 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00057 Score=61.80 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.-++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00053 Score=60.96 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0068 Score=63.14 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----------h------cc---C-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------WR---G-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----------~------~~---g-~se~~l~~~f~~a 295 (487)
++.-+++.||+|+||||++..+|..+ +..+..+++..... . +. + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999999866 66666555432110 0 00 1 1122334445555
Q ss_pred HhcCCcEEEechhhh
Q 011400 296 RHHAPSTIFLDEIDA 310 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~ 310 (487)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998843
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00064 Score=62.58 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766554
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00081 Score=63.68 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.||+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999776654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0009 Score=60.04 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
...++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999998765543
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00076 Score=63.85 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...++-|+|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 35567789999999999999999999998654 4555554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.001 Score=61.40 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
++.-+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4456899999999999999999999976443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00056 Score=69.46 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=38.0
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..+.+.+.+...+...+.. ....+++|.||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 44556666666665443321 122469999999999999999999999888754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=63.84 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=27.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.-+.|.||+|+||||+++.|++.+|...+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 345679999999999999999999999876543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=66.31 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec-ccchh---------hccCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~-~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
+...+++.||+|+||||+.++++..+ +..++.+.- .++.. ...+.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 33468999999999999999998876 334443321 11100 00111111233466667778999999
Q ss_pred echhh
Q 011400 305 LDEID 309 (487)
Q Consensus 305 IDEiD 309 (487)
+||.-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99983
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00077 Score=63.17 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..|+|.||||+||||+++.+|+.++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3569999999999999999999999975544
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00092 Score=62.58 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..|+|.|+||+||||+++.+|+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=62.39 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||+|.|+.||+.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987654 444543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.01 Score=57.55 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-++|+||+|+|||+|+..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456679999999999999999998754
|
| >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00029 Score=59.48 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcccCCCcee--eeccCCCcccceeeeeecCc-cchH--HH----HHHHHHHHHHHHHHH
Q 011400 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAGC-CSVE--TE----RERFFFFLIFILSAI 84 (487)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~~~~~~~~~~~~~~~ 84 (487)
+..+..||+.+|.+++-+|.-|+.|.++-| +|..|+.++..|++|.+.|+ |+.. ++ .+||..++.....+|
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL 91 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRL 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999998 99999999999999999986 5554 23 345888888888888
Q ss_pred HHHHhh
Q 011400 85 SLLLRL 90 (487)
Q Consensus 85 ~~~~~~ 90 (487)
- .|.-
T Consensus 92 ~-~Le~ 96 (116)
T 2dl1_A 92 E-ILEK 96 (116)
T ss_dssp H-HHHH
T ss_pred H-HHHh
Confidence 4 4443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=58.56 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999988 88888887543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00086 Score=66.86 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+.-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999988877765444
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0014 Score=59.29 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
-|.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00091 Score=65.02 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=43.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc---h--------hhccCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV---V--------SKWRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l---~--------~~~~g~se~~l~~~f~~a~~~~p~I 302 (487)
.+..-++|.||+|+||||++++++..+. ..++.. ...+ . ....|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3556789999999999999999998652 222221 1111 0 0001101122355566666678999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999983
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877665
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0014 Score=60.05 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~ 272 (487)
+.-|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777664
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=58.52 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 274 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~ 274 (487)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34556665555443322211 1112345678999999999999999999765 5566666543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0016 Score=60.05 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.++.-+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678899999999999999999988 554445554433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.009 Score=62.48 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5666779999999999999999998854 556777664
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.019 Score=65.88 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=35.5
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+|.+..+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 399999999999887431 12356889999999999999999863
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0018 Score=60.46 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999876654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0018 Score=59.85 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.|+|.||+|+|||+|++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999988763
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=61.49 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765443
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00093 Score=60.38 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK---TTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~---~~~i~v~ 272 (487)
-|+|.|+||+||||+++.+++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 488999999999999999999885 3355554
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.013 Score=61.18 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666779999999999999999998754 556777665
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=60.49 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887766543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.002 Score=59.11 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+.-|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999998763
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.006 Score=58.02 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.+++.||+|+|||.++..++...+.+++.+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 49999999999999999999988766665543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0023 Score=58.66 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.+.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998777643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0027 Score=60.74 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999976654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0011 Score=61.17 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+.-|+|.|+||+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987543
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0036 Score=63.95 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-cch--h--hcc-----CCcHHHHHHHHHHHHhcCCcEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SVV--S--KWR-----GDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~-~l~--~--~~~-----g~se~~l~~~f~~a~~~~p~IL 303 (487)
.+...++|.||+|+||||++++++..+. ..++.+... ++. . .++ |.....+...+..+-...|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3456689999999999999999998652 333333211 100 0 001 1011122345555556789999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0031 Score=57.59 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+..|.|.|++|+||||+++.+++. |.+++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3456899999999999999999998 7766543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0028 Score=61.22 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
...|.|.|++|+||||+++.+|..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999887764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0013 Score=60.67 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|+|.|+||+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345699999999999999999999874
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0025 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999988 7877654
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||.++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=58.73 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=24.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999885
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0046 Score=56.02 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=28.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45668999999999999999999987 3445555543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=58.97 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|.|+|++||||||+++.+++.+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 477999999999999999999989877654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0046 Score=59.16 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~--------~i~v~~~~l~ 277 (487)
+.-|.|.|++|+||||+++.|+..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4568899999999999999999999876 3356665553
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=64.11 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
+.-|+|.||+|+|||+|+..||+.++..++..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35689999999999999999999999888776543
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=54.23 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEec
Q 011400 240 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT-~LAraiA~el--~~~~i~v~~ 273 (487)
..-.++|||.|+||| .|.+++.+.. +..++.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 345788999999999 8999987754 677777764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0042 Score=59.66 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
...+.|.||+|+||||+++.+|+.+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3568899999999999999999999986653
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0046 Score=57.53 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35689999999999999999998 78766553
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.058 Score=56.94 Aligned_cols=79 Identities=6% Similarity=-0.097 Sum_probs=46.5
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhc------cc-cCchh--hcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVM------PI-KYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC- 264 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~------~l-~~~~~--~~~~~~~~~gvLL~GppGtGKT~LAraiA~el- 264 (487)
.+......+...+.++...+..+.+.+.... +. ..+.+ ...++.+..-++|.|+||+|||+++..+|...
T Consensus 188 ~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 188 MEQVWNAGPWIPDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHTTCCCCCCSSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHhcChHHHHHHHHhhhcccccCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 3344444445556666544555555443310 01 11111 11235666779999999999999999998865
Q ss_pred ---CCcEEEEec
Q 011400 265 ---KTTFFNISA 273 (487)
Q Consensus 265 ---~~~~i~v~~ 273 (487)
+.++..++.
T Consensus 268 ~~~g~~vl~~s~ 279 (503)
T 1q57_A 268 TAMGKKVGLAML 279 (503)
T ss_dssp TTSCCCEEEEES
T ss_pred HhcCCcEEEEec
Confidence 456777664
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.038 Score=54.79 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=29.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4566779999999999999999998765 456666654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0052 Score=58.13 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++..+.|.|++|+||||+++.++..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44568999999999999999999999977654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=58.33 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFN 270 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~ 270 (487)
.++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 445568899999999999999999987 554443
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0072 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.-|+|.|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 44568899999999999999999988765443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.041 Score=54.93 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..++.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3556779999999999999999999866 555555544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0044 Score=57.50 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l 276 (487)
++.-++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456789999999999999999999764 55777765433
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568999999999999999999976
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0037 Score=62.76 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-chh----h---ccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVS----K---WRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~-l~~----~---~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
+...++|.||+|+||||++++++.... ...+.+.... +.. . +........+..+..+-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999999763 2344444321 110 0 11001122344556666788999999998
Q ss_pred h
Q 011400 309 D 309 (487)
Q Consensus 309 D 309 (487)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0052 Score=57.05 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999999876654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.097 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++..|+|.|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999766 666666665
|
| >3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0012 Score=53.03 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhccc---CCCc--eeeeccCCCcccceeeeeecCccchHHHHHH----HHHHHHHHHHHH
Q 011400 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETERER----FFFFLIFILSAI 84 (487)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 84 (487)
..+..||+.+|.+++-+|.-|+. |.++ +-+|..|+.+...|++|.+.|-|..-+++++ |...+.-...+|
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999 9898 6689999999999999999998888888776 555555555555
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=60.03 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-~~~~i 269 (487)
.-|+|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 54444
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.034 Score=63.14 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+..-++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3455689999999999999999875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0049 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0055 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0059 Score=60.93 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=28.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.-++|.||+|+|||+|+..+|+.++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999999877666554
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=54.23 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
..-.+++||+|+|||+.+-.++..+ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3457889999999999988888766 56655553
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.073 Score=56.23 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.++.-++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3556678999999999999999999876
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0059 Score=55.33 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
-++|.||+|+||||+++.++...+.. +.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcc
Confidence 47899999999999999999865432 34443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.022 Score=52.38 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++.-+.|.||+|+||||+++.++..+ +.+++.++.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999876 555655543
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0073 Score=59.05 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 678766543
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=61.99 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999876666543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.064 Score=49.47 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=32.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhc-cccCch-hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 204 VKWESIKGLENAKRLLKEAVVM-PIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~-~l~~~~-~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+|+++.-.+.+.+.|.+.-.. +..+.. .... +...+.+++.+|+|+|||..+-..+-+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 3477776566666666542110 100000 0011 1123569999999999998766555443
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.068 Score=49.33 Aligned_cols=58 Identities=19% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchh---hcCCCCCCeeEEEEcCCCChHHHH-HHHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKY---FTGLLSPWKGILLFGPPGTGKTML-AKAVATE 263 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~---~~~~~~~~~gvLL~GppGtGKT~L-AraiA~e 263 (487)
.+|+++.-.+.+.+.+.+.-.. ..++.. +.. +...+.+++.+|+|+|||.. +-.+...
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~-~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCC-SCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCC-CCcHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4577776666666666543110 001100 011 12336799999999999987 3344443
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.044 Score=59.84 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.+.+++.+..++.. ..-.||+||||||||+.+-.+..++ +.++..+..
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 56677777766532 1237899999999998655554433 555555443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0069 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.19 Score=52.27 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~ 293 (487)
.+++.+++.|++|+||||++-.+|..+ |..+..+++...... +. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356788999999999999999998765 667777766532110 00 0 11233355666
Q ss_pred HHHhcCCcEEEechh
Q 011400 294 LARHHAPSTIFLDEI 308 (487)
Q Consensus 294 ~a~~~~p~IL~IDEi 308 (487)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555689999875
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.023 Score=60.59 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.+.-|+|.|.||+||||+++.++..+ +.....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 34568999999999999999999988 455555555443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.68 E-value=0.11 Score=51.12 Aligned_cols=69 Identities=23% Similarity=0.103 Sum_probs=44.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccC----CcHHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRG----DSEKLIKVLFELAR 296 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g----~se~~l~~~f~~a~ 296 (487)
+.-+++.|++|+||||++..+|..+ +..+..+++...... +.+ .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 566666654321100 001 12233345666666
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.....+++||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 556689999975
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.031 Score=57.93 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+++++.-....+..|..++. .+...++|.||+|+||||++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345565544444455555431 2334589999999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0053 Score=57.27 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
..++++|.||+|+|||++|..+++..+ +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 457899999999999999999999876 6555443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.028 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.5
Q ss_pred eeEEEEcCCCChHHHHH-HHHHHH
Q 011400 241 KGILLFGPPGTGKTMLA-KAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA-raiA~e 263 (487)
+.+++.+|+|+|||..+ -.+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 57999999999999864 334443
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.056 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999876
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0077 Score=55.94 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
-|.|.|++|||||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.042 Score=55.33 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... +.++..++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3566679999999999999999998864 666666654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0081 Score=55.37 Aligned_cols=27 Identities=33% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999887
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0081 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345889999999999999999999987776654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0072 Score=55.74 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++.+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445699999999999999999998763
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0081 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.053 Score=61.74 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
..-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999954
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.051 Score=57.80 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=49.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------------c----c--CCcH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----R--GDSE 285 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------------~----~--g~se 285 (487)
+.+...++|.||+|+|||+|++.++... |.+.+++...+-... + . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3455679999999999999999998765 444555543221000 0 0 0123
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 286 KLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 286 ~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
...+.++..+....|.+|+||=+..+.
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 455566677777889999999665554
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.085 Score=55.02 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++-.+|... |.++..++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 35666779999999999999999998765 667777764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=62.55 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=43.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-chhh---c--------cCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~-l~~~---~--------~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... + .+...-.+...+..+-.+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999998773 3455554322 2100 0 011111233344455567899999
Q ss_pred echh
Q 011400 305 LDEI 308 (487)
Q Consensus 305 IDEi 308 (487)
++|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9987
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0013 Score=68.77 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCcCCCCcEEEEEE-eCCCCcccHHHHh--hccccccCCCCCHH-HHHHHH
Q 011400 324 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 384 (487)
Q Consensus 324 ~~~~i~~~Ll~~ld~~~~~~~~VlVIat-Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~e-eR~~IL 384 (487)
..+++++.|+..||++..... + +++ ||+|+.+|++|++ ||++.|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 446788899999998865433 3 444 9999999999998 99999999999987 677765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.03 Score=55.45 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccccCch---hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 213 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~---~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555666655544332221 111113456678999999999999999999976
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.016 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345568899999999999999999987
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.061 Score=52.90 Aligned_cols=70 Identities=24% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----------------hc---cC-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KW---RG-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----------------~~---~g-~se~~l~~~f~~a 295 (487)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... .+ .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999866 45555554321100 00 01 1122335566666
Q ss_pred HhcCCcEEEechh
Q 011400 296 RHHAPSTIFLDEI 308 (487)
Q Consensus 296 ~~~~p~IL~IDEi 308 (487)
....+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5567789999997
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0063 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999885
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.014 Score=54.31 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++-+.|.||+|+|||+|++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998765
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.019 Score=62.51 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.+.-|+|.|.||+||||+++.+++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999999 999998875433
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.03 E-value=0.1 Score=54.28 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++..++|.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4566666653
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.019 Score=54.33 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~ 270 (487)
.+.-+.|.||||+||||+++.+++.++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 445688999999999999999999986 34443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.015 Score=53.67 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||+|+|||||++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455688999999999999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+|||||++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455668999999999999999999976
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.095 Score=47.60 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.5
Q ss_pred eeEEEEcCCCChHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAr 258 (487)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997544
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.016 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.037 Score=52.08 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=24.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 335689999999999888887755 66666664
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999998865
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.02 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+-|.||||+||||+++.|++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477899999999999999999998876644
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.097 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.8
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||..+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3679999999999997643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.15 Score=52.81 Aligned_cols=70 Identities=26% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------cc---CCc-HHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR---GDS-EKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~---g~s-e~~l~~~f~~a 295 (487)
++..+++.|++|+||||++..+|..+ +..+..+++...... +. +.. .......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999876 455555554211100 00 011 22335566666
Q ss_pred HhcCCcEEEechh
Q 011400 296 RHHAPSTIFLDEI 308 (487)
Q Consensus 296 ~~~~p~IL~IDEi 308 (487)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455679999854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.018 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556688999999999999999999764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.035 Score=56.32 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccccCch---hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 213 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~---~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+.+.+...+.... ...--..++.-+.|.||.|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556666655544333221 111113456778999999999999999999976
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.021 Score=54.30 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344558899999999999999999988753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.079 Score=56.31 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISA 273 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LArai--A~el--~~~~i~v~~ 273 (487)
.+...++|.||+|+|||||++.+ +... +...++++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45567999999999999999994 4433 344555544
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.063 Score=56.31 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999988754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.086 Score=58.86 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=33.2
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCch-hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~-~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+|+++.-.+...+.+.+.-..|..... -+...+.....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3466665555555555444333321110 01111223356999999999999977777554
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.02 Score=56.85 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++...+.|.||+|+|||||++.|+..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 35667799999999999999999999873
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.038 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999999876
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.13 Score=47.66 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.8
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3579999999999998543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.022 Score=55.54 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~ 272 (487)
.+..-++|.||||+|||+|++.++..+ |.+++.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456679999999999999999998865 43555554
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.12 Score=57.86 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+..-++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.043 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445688999999999999999999875
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.046 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....|++.|++|+|||+|+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.086 Score=53.10 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
....|.|.|+||+|||+++..++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999999876 55544443
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.086 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..|+|.|.||+||||+++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999999874
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.018 Score=56.55 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l 276 (487)
.-|.|.||+|+||||+++.+++.++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3488999999999999999999875 44555665544
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.12 Score=48.53 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.0
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||...-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998743
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.028 Score=60.65 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~ 275 (487)
.+..|+|.|+||+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345689999999999999999999986 7788877544
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.046 Score=55.38 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=44.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cchhh-------ccC-C-------cHHHHHHHHHHHHhcCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK-------WRG-D-------SEKLIKVLFELARHHAP 300 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-~l~~~-------~~g-~-------se~~l~~~f~~a~~~~p 300 (487)
+...++|.||+|+||||++++++.... ...+.+... ++... ++- + ....++..+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 456799999999999999999999763 234444321 11100 111 0 01123455556666788
Q ss_pred cEEEechhh
Q 011400 301 STIFLDEID 309 (487)
Q Consensus 301 ~IL~IDEiD 309 (487)
..++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999974
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.027 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.038 Score=52.21 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.-|.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.016 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=17.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHH-HHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVA-TEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA-~el 264 (487)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344568899999999999999999 765
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.1 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995444433
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.031 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..++|||.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4579999999999999999999884
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.15 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+..-+.|.||||+|||||.+.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999999765
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.038 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455568899999999999999999976
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.19 Score=47.16 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.0
Q ss_pred eeEEEEcCCCChHHHHH
Q 011400 241 KGILLFGPPGTGKTMLA 257 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA 257 (487)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.44 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+.+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987654444
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.063 Score=48.55 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-+.|.|++|+||||++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999999876 45555444
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.046 Score=58.65 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l 276 (487)
.++..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3456789999999999999999999884 34545655444
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.83 E-value=0.018 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|.|.|++|+||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445689999999999999999999983
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.04 Score=54.43 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345588999999999999999999765
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.12 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.....++|.||+|+|||+|++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345679999999999999999998865
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.033 Score=52.94 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.++.-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45666789999999999999999988653
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.079 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457889999999999999999987 4555444
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|++|+|||+|+.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356999999999999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.035 Score=52.85 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566678999999999999999998865
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=93.49 E-value=0.063 Score=58.41 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999887776654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.25 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..-++|.||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346889999999999999999874
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.093 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.15 Score=60.22 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+++...+.|.||+|+|||||++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4667789999999999999999999876
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.41 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 579999999999998876665543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.048 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999998775
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.27 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|+|.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.032 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++.-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.059 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.06 Score=53.79 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999999875
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.048 Score=56.86 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3355789999999999999888753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.042 Score=52.43 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999998854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.26 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998765
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.24 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA 261 (487)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998655433
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.043 Score=53.01 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.|+.-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35556788999999999999999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.049 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+ .-+.|.||.|+|||||.+.++.-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355 678899999999999999999865
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.11 Score=48.87 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=25.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
+.-|.|.|++|+||||+++.+++.++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456889999999999999999999986443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.062 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.066 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|+|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999854
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.055 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999985
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.053 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.056 Score=52.36 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+.+..-+.|.||.|+|||||++.|+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355667899999999999999999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.048 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3566679999999999999999998865
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.084 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.366 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999998864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.066 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.-|.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999977
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.056 Score=57.42 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
...|+|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999974
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.051 Score=52.81 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556678999999999999999999865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.052 Score=52.03 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+..-+.|.||.|+|||||++.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566889999999999999999985
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.3 Score=53.73 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCeeEEEEcCCCChHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LA 257 (487)
...++++.||+|+|||+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 3578999999999999987
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.19 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA 261 (487)
.+.+++.+|+|+|||..+-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 3679999999999997655433
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.043 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-+.|.||.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.053 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.|+.-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 35556788999999999999999998653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.045 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455678999999999999999999865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.045 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999998865
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.22 Score=53.25 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
+..|+|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999977 456777765444
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.049 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.|.|++|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999763
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.06 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|||||||.+.|+.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455668899999999999999999855
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.071 Score=49.94 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|-|+|..||||||+++.++. +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999988 888877644
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.047 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.|+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998865
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.44 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
...++|.||.|+||||+.|.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46689999999999999999943
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.61 E-value=0.044 Score=51.42 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999998865
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.048 Score=51.90 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++.-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999865
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.064 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.069 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5679999999999999999999987543
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.074 Score=45.99 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.072 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.22 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.+++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5699999999999986544433
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.058 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+.-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556678899999999999999998854
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.058 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||.+.|+...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555678999999999999999999865
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.1 Score=58.42 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888776654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.16 Score=46.72 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.076 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=92.43 E-value=0.076 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.|++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.088 Score=54.58 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=27.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
..+++.+|+|+|||..+-.++...+.+.+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888887766666543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=92.42 E-value=0.052 Score=52.15 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||.|+|||||.+.++....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4556689999999999999999998653
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.37 Score=48.43 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.0
Q ss_pred CeeEEEEcCCCChHHHH
Q 011400 240 WKGILLFGPPGTGKTML 256 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~L 256 (487)
.+.+++.+|+|+|||..
T Consensus 52 ~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAA 68 (417)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEEcCCCCHHHHH
Confidence 46799999999999974
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.051 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.|+.-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455668999999999999999999865
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.068 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=19.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.-|.|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999987
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.099 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999763
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.052 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455678999999999999999999865
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.072 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 455668899999999999999999854
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.071 Score=54.12 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455668899999999999999999855
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.063 Score=54.21 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455668899999999999999999855
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.075 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988887654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.086 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|+.++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998743
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.1 Score=49.24 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455788899999999999999997644
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.075 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||.+.||.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3455668899999999999999999854
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.077 Score=46.51 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+.|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.063 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.077 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|||||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455568899999999999999999855
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.058 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999865
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.099 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999999976
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.068 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999855
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.059 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||.|+|||||++.|+....
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4556688999999999999999998653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.091 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.089 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.092 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.082 Score=46.12 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.37 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
+++++.+|+|+|||..+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999987766653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.092 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.089 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.19 Score=48.13 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.075 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 455568899999999999999999855
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.098 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999873
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.1 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|+||+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.065 Score=54.20 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||.+.||.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668899999999999999999854
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.1 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.67 E-value=0.084 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=91.66 E-value=0.11 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.097 Score=45.45 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.11 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.094 Score=53.77 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|||||||.+.|+.-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3556679999999999999999999743
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.09 Score=45.50 Aligned_cols=21 Identities=43% Similarity=0.817 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.37 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.2
Q ss_pred eeEEEEcCCCChHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAr 258 (487)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998543
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.73 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999998876665443
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.18 Score=49.87 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-++|.|+.|+||||+++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.15 Score=57.21 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.+++.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999987666543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.1 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.1 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.13 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999885
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.086 Score=51.80 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566678999999999999999999865
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.32 Score=48.78 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.3
Q ss_pred CeeEEEEcCCCChHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKA 259 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAra 259 (487)
.+.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 35699999999999987433
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.11 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.11 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.34 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.12 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.18 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34679999999999999999998765 556665553
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.13 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999987
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.25 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEe
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 272 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~ 272 (487)
....+++.|.+|+||||++..+|..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999999776 55565555
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.08 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4666779999999999999999998855
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.11 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.12 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.26 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999976
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.11 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.077 Score=48.24 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+...+.|.|++|+|||+|++.++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556999999999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.12 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.095 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
..-+.|.||.|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.12 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999763
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.12 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999874
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.37 Score=49.98 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchh-----hcCCC-CCCeeEEEEcCCCChHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGLL-SPWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~-----~~~~~-~~~~gvLL~GppGtGKT~LA 257 (487)
.+|+++.-.+.+.+.|.+.- ...+.. +..+. ..++.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 35777766666666665411 111111 11111 23578999999999999874
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.12 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.48 Score=46.29 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchh-----hcCCC-CCCeeEEEEcCCCChHHHHH
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGLL-SPWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~-----~~~~~-~~~~gvLL~GppGtGKT~LA 257 (487)
..+|+++.-.+.+.+.|...- ...+.. +..+. .+++.+++.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 346777766666666665421 111111 11112 23578999999999999763
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.14 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.12 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999999888754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.11 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|++.|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.13 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+..-+.|.||.|+|||||+|.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44569999999999999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.15 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.14 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.094 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.++.-+.|.||.|+||||+++.++.. +..+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 34455889999999999999999987 44333
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=90.80 E-value=0.4 Score=47.96 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.9
Q ss_pred CeeEEEEcCCCChHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LA 257 (487)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 468999999999999875
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=90.79 E-value=0.14 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.21 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.1
Q ss_pred eeEEEEcCCCChHHHHH-HHHH
Q 011400 241 KGILLFGPPGTGKTMLA-KAVA 261 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA-raiA 261 (487)
+.+|+.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999975 4444
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.16 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998765
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.19 Score=49.96 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
...+++|.|++|+|||++|.++... |..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 4578999999999999999999875 4443
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.72 E-value=0.46 Score=45.08 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-.+++||.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 446789999999997666655543 55555554
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.72 E-value=0.17 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.21 Score=51.94 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+..-+.|.||+|+|||||++.|+......
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 44568999999999999999999987544
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.14 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|+|.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.64 E-value=0.13 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=90.58 E-value=0.18 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.14 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.55 E-value=0.12 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.15 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|++++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.17 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+...|++.|++|+|||+|+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999763
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.51 E-value=0.18 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.16 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.48 E-value=0.33 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++++.+|+|+|||..+-.++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888886654 555555543
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.16 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|++.|++|+|||+|+..+...-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998753
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=90.44 E-value=1.1 Score=47.31 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCeeEEEEcCCCChHHHH
Q 011400 239 PWKGILLFGPPGTGKTML 256 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~L 256 (487)
..+.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 457899999999999984
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.15 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999888774
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.15 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=90.43 E-value=0.12 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=90.40 E-value=0.15 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|+.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3555668899999999999999999854
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.2 Score=50.41 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
...-+.|.||+|+|||||.+.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34568999999999999999999988644
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.16 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.15 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|+|.|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999985
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.31 E-value=1.2 Score=49.56 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
+.++|+.||+|+|||..+-..+-.. +...+.+.
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999776554433 55555554
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.19 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.25 E-value=0.15 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.16 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.16 E-value=0.3 Score=44.83 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
|.|-|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999977 66666554
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.27 Score=45.53 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh--CCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC--KTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el--~~~~i~v 271 (487)
=|.|-|+.|+||||.++.+++.+ +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 37788999999999999999988 4455544
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.17 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|++.+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.17 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=90.10 E-value=0.18 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.22 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.16 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.01 E-value=0.2 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 4e-82 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 3e-79 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 3e-63 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 3e-51 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 7e-36 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 8e-27 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 2e-25 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 9e-23 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 6e-20 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 1e-13 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 9e-12 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 3e-11 | |
| d1r6bx2 | 268 | c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A | 2e-08 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 2e-07 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 6e-07 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 1e-06 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 9e-06 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 9e-05 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 2e-04 | |
| d1qvra2 | 387 | c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus | 2e-04 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 5e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.002 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 0.002 |
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 252 bits (646), Expect = 4e-82
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 12/247 (4%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 259
+P V ++ + G E AK LKE V +K P F + KG+LL GPPG GKT LA+A
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 260 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319
VA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121
Query: 320 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 376
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + PD
Sbjct: 122 GGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180
Query: 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436
+ R + + E + LL +RT G+ G+D+ + EAA+ R EGR
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR------EGR 234
Query: 437 QEVAPDD 443
+++ D
Sbjct: 235 RKITMKD 241
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 245 bits (627), Expect = 3e-79
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
+ + G + AK + E V ++ P F L KG+L+ GPPGTGKT+LAKA+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 319
A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 66 AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 320 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 377
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V LPD
Sbjct: 126 GGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 378 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437
R + + + + ++ T G+SG+D+ + EAA+ R ++
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NKR 238
Query: 438 EVAPDD 443
V+ +
Sbjct: 239 VVSMVE 244
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 204 bits (520), Expect = 3e-63
Identities = 93/261 (35%), Positives = 152/261 (58%), Gaps = 15/261 (5%)
Query: 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 260
P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 261 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320
A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I RG
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 321 E-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 377
+ A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I +PLPD
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 378 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM--VLLEG 435
++R A+ ++ L + + + L + T G+SG+D+ + + A +R + +
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 240
Query: 436 RQ--------EVAPDDELPQI 448
R+ EV DD +P+I
Sbjct: 241 RERQTNPSAMEVEEDDPVPEI 261
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 172 bits (437), Expect = 3e-51
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 7/261 (2%)
Query: 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVAT 262
V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 263 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 322
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTHG 118
Query: 323 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 380
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD R
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177
Query: 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 440
+ + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237
Query: 441 PDDELPQIGPIRPEDVEIALK 461
+ + + + +D AL
Sbjct: 238 DAEVMNSL-AVTMDDFRWALS 257
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 133 bits (336), Expect = 7e-36
Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 17/202 (8%)
Query: 200 GSPDVKWESIKGLENAKRLLKEAVV--MPIKYPKYFTGLLS-PWKGILLF-GPPGTGKTM 255
GS V ++ R + + P G+++ G +GKT
Sbjct: 79 GSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTP 138
Query: 256 LAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313
L A+ K + + +S + D + + H I +D + +I
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196
Query: 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----LDAAMLR--RLE 367
+ R +LL + + S V+A+ N P + + R
Sbjct: 197 AA-GGNTTSGGISRGAFDLLSDIGAMAAS-RGCVVIASLN-PTSNDDKIVELVKEASRSN 253
Query: 368 KRILVPLPDTEARRAMFESLLP 389
LV D + +
Sbjct: 254 STSLVISTDVDGEWQVLTRTGE 275
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 108 bits (272), Expect = 8e-27
Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 27/235 (11%)
Query: 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264
+W + + LL + + + K + + L GP +GKT LA A+ C
Sbjct: 121 EWMAG--VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 178
Query: 265 KTTFFNISASSVVSK-WRGDSEKLIKVLFELA------RHHAPSTIFLDEIDAIISQRGE 317
N++ G + V+FE PS ++ +D +
Sbjct: 179 GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG 238
Query: 318 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 374
+ E K + + N E R K+I
Sbjct: 239 SVKVNLEKKHLNKRTQIFPP-----------GIVTMN---EYSVPKTLQARFVKQIDFRP 284
Query: 375 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429
D L + +S LL+ ++ + ++ RL
Sbjct: 285 KDYLKHCLERSEFLLEKRIIQS-GIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 102 bits (255), Expect = 2e-25
Identities = 46/261 (17%), Positives = 95/261 (36%), Gaps = 27/261 (10%)
Query: 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 248
A + II+ V + L++ + L+++ +P +LL GP
Sbjct: 3 YASYIMNGIIKWGDPVT----RVLDDGELLVQQT----------KNSDRTPLVSVLLEGP 48
Query: 249 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDE 307
P +GKT LA +A E F I + + + ++ + +K +F+ A S + +D+
Sbjct: 49 PHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 108
Query: 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RL 366
I+ ++ S + LL+ + + ++ T+ L +
Sbjct: 109 IERLLDYV---PIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 165
Query: 367 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAM 423
I V P+ + E+L + + ++ +G G L+ E ++
Sbjct: 166 STTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 222
Query: 424 Q--PLRRLMVLLEGRQEVAPD 442
Q P R+ L +E
Sbjct: 223 QMDPEYRVRKFLALLREEGAS 243
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 95.8 bits (237), Expect = 9e-23
Identities = 26/275 (9%), Positives = 67/275 (24%), Gaps = 37/275 (13%)
Query: 219 LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV- 277
+ + ++ + LL G PG+GKT L A+ E + I +
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
Query: 278 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335
+ + K + + ++ + + +
Sbjct: 71 QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130
Query: 336 MDGLTQSDEL--------VFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 385
+ ++ L + A R + + +
Sbjct: 131 LQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 190
Query: 386 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445
+ L E + YS + +S + ++
Sbjct: 191 LHKTGLFSDIRL---YNREGVKLYSSLETPSISPKETLEKELN----------------- 230
Query: 446 PQIGPIRPEDVEIALKNTRPSAHLHAHR-YEKFNA 479
+ ++++ L+ L+ H+ +F A
Sbjct: 231 ---RKVSGKEIQPTLERIEQKMVLNKHQETPEFKA 262
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 88.4 bits (218), Expect = 6e-20
Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 32/285 (11%)
Query: 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATEC 264
+ I G +AKR + A+ + + L K IL+ GP G GKT +A+ +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 265 KTTFFNISASSV--VSKWRGDSEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGE 317
F + A+ V + + +I+ L + A +F+DEID I ++GE
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK-ICKKGE 132
Query: 318 ARSEHEASRRLKTELLIQMDGLTQSD--------ELVFVLAA---TNLPWELDAAMLRRL 366
+ ++ +LL ++G T S ++F+ + P +L + RL
Sbjct: 133 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 192
Query: 367 EKRILVPLPDTEARRA----MFESLLPSQ-----TGEESLPYDLLVERTEGYSGSDIRLV 417
R+ + SL T ++ + + + +
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 252
Query: 418 SKEAAMQPLRRLM-VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461
++ + L +M L++ A D + I V AL
Sbjct: 253 TENIGARRLHTVMERLMDKISFSASDMNGQTVN-IDAAYVADALG 296
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 68.4 bits (166), Expect = 1e-13
Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 23/219 (10%)
Query: 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264
+ G E K+ L+ + + P + +LLFGPPG GKT LA +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 265 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 324
S ++ + +F+DEI + Q E
Sbjct: 60 GVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 325 SRRLK---TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 379
+ + + + A T P + A +L + + + P+ A
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTR-PGLITAPLLSRFGIVEHLEYYTPEELA 171
Query: 380 RRAM-FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 417
+ M LL + EE+ + R+ G RL
Sbjct: 172 QGVMRDARLLGVRITEEAA--LEIGRRSRGTMRVAKRLF 208
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 63.3 bits (152), Expect = 9e-12
Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 25/262 (9%)
Query: 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 260
SP + + E + L + ++ P + L G PGTGKT+ + +
Sbjct: 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKL 63
Query: 261 ATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 316
K F I+ + E + R FL + + +R
Sbjct: 64 WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123
Query: 317 EARSEHEA-------SRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRL 366
L Q + + V+ N +
Sbjct: 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 183
Query: 367 EKRILVPLPDTEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 423
+ I + + ++ ++ + T + D A+
Sbjct: 184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 243
Query: 424 QPLRR--LMVLLEGRQEVAPDD 443
L R GR+ +AP+D
Sbjct: 244 DILYRSAYAAQQNGRKHIAPED 265
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 61.1 bits (147), Expect = 3e-11
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 23/225 (10%)
Query: 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264
+ G EN K+ L A+ + +LL GPPG GKT LA +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPPGLGKTTLAHIIASEL 59
Query: 265 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 324
+T S +V + GD ++ +F+DEI + E + A
Sbjct: 60 QTNIHVTSGPVLVKQ--GDMAAILT------SLERGDVLFIDEIHRLNKAVEELL--YSA 109
Query: 325 SRRLKTELLIQMDGLTQSDEL----VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380
+ +++I +S + ++ AT L + + R + + +
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169
Query: 381 RAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQ 424
+ + + E +++ +R+ G IRL K
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT-KRVRDM 213
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 53.1 bits (127), Expect = 2e-08
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 238 SPWKGILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSE 285
LL G G GKT +A+ +A +C +I + +K+RGD E
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 286 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQS 342
K K L + S +F+DEI II + + +A+ +K L I++ G T
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 156
Query: 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 389
E + E D A+ RR +K + P E + L P
Sbjct: 157 QEFSNIF-------EKDRALARRFQKIDITE-PSIEETVQIINGLKP 195
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 29/275 (10%), Positives = 66/275 (24%), Gaps = 49/275 (17%)
Query: 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 266
++ L + + + G G GKT LAK
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 267 TFFNISASSVVSKWRG--------------------------DSEKLIKVLFEL-ARHHA 299
+ + + ++K L + +
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL- 358
+ LDE +++S A + R+ E+ + + V + +
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMR 190
Query: 359 --DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD---LLVERTEGYSGS- 412
+ ++ ++ +P + + E + L+ + G
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 413 ----DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 443
+ K A M GR ++ D
Sbjct: 251 GSARRAIVALKMACE------MAEAMGRDSLSEDL 279
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSP--WKGILLFGPPGTGKTMLAKAVATECKTTF 268
G +AKR + A+ + + L K IL+ GP G GKT +A+ +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 269 FNISASSVVSKWRG----DSEKLIKVLFELARHH 298
+ A+ G + + +I+ L + A
Sbjct: 78 IKVEATKFT--EVGYVGKEVDSIIRDLTDSAMKL 109
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 205 KWESIKGLENAKRLLKEAVVM-----PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 259
+ + G + + LK + + ++ +L+GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 260 VATECKTTFFNISASSVVSKWRGDS 284
VA E +AS V SK ++
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNA 96
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 262
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 9 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALAA 50
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 9e-05
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264
++ E LK P P LL+GP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESI 57
Query: 265 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315
V + KL + H + + D I+ Q
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 298
K + + G +GK++L +A TT V + G E+ ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 41.2 bits (96), Expect = 2e-04
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 243 ILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGD-SEKLIK 289
+L G PG GKT + + +A + + + +K+RG+ E+L
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 290 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349
V+ E+ + +F+DE+ ++ G+A +A LK L EL +
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPAL--------ARGELRLIG 156
Query: 350 AATNLPWEL---DAAMLRRLEKRILVPLPDTEARRAM 383
A T + D A+ RR + + E +
Sbjct: 157 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISIL 193
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI------SASSVVSKWRGDSEKLIKVLF 292
ILL GP G+GKT++A+ +A A V +L++
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 293 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336
+ +F+DEID I + S + L+++
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 296
+LL G PG+GK+ +A+A+A + + + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 37.8 bits (86), Expect = 0.002
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 8/119 (6%)
Query: 226 PIKYPKYFTG-------LLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277
P K F L L+ G TGK+ + K E + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336
+ + + L + L + I +E + + K L
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 125
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 37.6 bits (87), Expect = 0.002
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 243 ILLFGPPGTGKTMLAKAV--------ATECKTTFFNISASSVVSKWRG-------DSEKL 287
+L+ G G GK ++A+ + +I ++ G +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 288 IKVLFELARHHAPSTIFLDEIDAI 311
+ FELA T+FLDEI +
Sbjct: 86 KEGFFELADG---GTLFLDEIGEL 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.91 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.9 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.87 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.78 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.77 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.75 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.71 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.67 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.65 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.63 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.61 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.57 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.5 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.46 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.45 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.45 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.43 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.35 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.31 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 99.19 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.04 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 99.0 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.01 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 98.0 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.94 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.85 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.83 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.73 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.69 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.67 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.63 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.61 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.59 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.5 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.43 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.36 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.35 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.33 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.28 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.27 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.27 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.25 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.24 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.24 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.22 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.21 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.12 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.12 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.12 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.03 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.94 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.86 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.86 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.85 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.84 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.76 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.76 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.69 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.67 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.67 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.55 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.54 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.48 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.46 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.33 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.29 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.28 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.27 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.25 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.2 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.16 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.98 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 95.91 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.83 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.72 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.58 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.41 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.39 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.33 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.32 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.29 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.28 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.28 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.09 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.93 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.82 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.76 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.75 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 94.74 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.68 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.63 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.42 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.36 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.33 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.18 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.15 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.08 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.91 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.8 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.72 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.67 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.61 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.35 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 93.32 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.31 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.11 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.08 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.01 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 92.9 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.89 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 92.82 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 92.77 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 92.76 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 92.73 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.66 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.55 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 92.52 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.33 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.33 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.31 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.27 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.27 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.25 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.25 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 92.24 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.19 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 92.15 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 92.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.96 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.87 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.73 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.71 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.69 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.64 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.61 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.55 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.45 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.45 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 91.4 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.32 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.21 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.9 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.89 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.88 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.85 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.8 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 90.76 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 90.66 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.61 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.4 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.1 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.06 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.06 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.05 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.03 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.02 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.77 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.51 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.18 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 89.17 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.16 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.01 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 88.86 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.7 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 88.48 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.39 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 88.37 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.12 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 88.1 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.55 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 87.31 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 86.94 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 86.59 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 86.34 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.39 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.18 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 85.17 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.11 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.69 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.52 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.37 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 82.54 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 81.64 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.2 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 81.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 81.05 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-42 Score=339.45 Aligned_cols=247 Identities=33% Similarity=0.520 Sum_probs=217.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.+..++++|+||+|++++|++|.+.+.. +.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++++
T Consensus 3 ~~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l 81 (256)
T d1lv7a_ 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (256)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence 3567899999999999999999998765 6777777765 7788999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|+.|+.++||||||||+|.++++++... ..+....+++++|+..++++... ..|+||+|||+|
T Consensus 82 ~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~v~vIatTn~~ 160 (256)
T d1lv7a_ 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRP 160 (256)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCT
T ss_pred hhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCc
Confidence 9999999999999999999999999999999999998765432 23345577899999999988654 458999999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..+++++|+.++|.+|++.++.+.....+.++..+++.|+||+++||..+|++|+..++++
T Consensus 161 ~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~----- 235 (256)
T d1lv7a_ 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 235 (256)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred ccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999997 9999999999999999999999999888888899999999999999999999999998887763
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
....|+.+||++|++++.
T Consensus 236 -------------~~~~i~~~d~~~Al~rv~ 253 (256)
T d1lv7a_ 236 -------------NKRVVSMVEFEKAKDKIM 253 (256)
T ss_dssp -------------TCSSBCHHHHHHHHHHHT
T ss_pred -------------CCCccCHHHHHHHHHHHh
Confidence 113589999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-42 Score=338.20 Aligned_cols=242 Identities=36% Similarity=0.556 Sum_probs=211.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
+.|+++|+||+|++++|++|++.+. ++.+++.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i~-~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 5689999999999999999998765 47777776654 678899999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
+|+|++++.++.+|+.|+.++||||||||+|.++.++.... .......+++++|+..|+++... ..|+||+|||.|+.
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~vivi~tTn~~~~ 159 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDI 159 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-CCEEEEEEESCGGG
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCccc
Confidence 99999999999999999999999999999999998775432 23345677899999999988544 45889999999999
Q ss_pred ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011400 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 358 Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
+|++++| ||+.+++|+.|+.++|.+||+.++.......+.+++.+++.|+||+++||..+|++|+..++++-
T Consensus 160 ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~------ 233 (247)
T d1ixza_ 160 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------ 233 (247)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999996 99999999999999999999999988888888899999999999999999999999998877641
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 436 RQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 436 ~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...|+++||++|+.
T Consensus 234 ------------~~~i~~~d~~~A~~ 247 (247)
T d1ixza_ 234 ------------RRKITMKDLEEAAS 247 (247)
T ss_dssp ------------CSSBCHHHHHHHTC
T ss_pred ------------CCCcCHHHHHHhhC
Confidence 13599999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-42 Score=340.34 Aligned_cols=255 Identities=34% Similarity=0.573 Sum_probs=222.3
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccC
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 282 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g 282 (487)
++|+||+|++++|++|++.+..|+.+++.+... ..+++|+|||||||||||++|+++|++++.+++.++++++.+.+.|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 579999999999999999999999999998875 7888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHH
Q 011400 283 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 362 (487)
Q Consensus 283 ~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL 362 (487)
..+..++.+|..|+.++||||||||+|.+++++.... ++....+++.++..+++.... ..|+||+|||+|+.+|+++
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~~vlvi~tTn~~~~ld~al 157 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPAL 157 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCCCS-SCEEEEEEESCGGGSCGGG
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhcccccccccc-CCccEEEeCCCccccchhh
Confidence 9999999999999999999999999999998876543 233467788888888877544 4588999999999999999
Q ss_pred Hh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 011400 363 LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 440 (487)
Q Consensus 363 ~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~ 440 (487)
+| ||+.++++++|+.++|..||+.++++.....+.+++.+|+.|+||+++||..+|++|+..+++|....+....+..
T Consensus 158 ~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~ 237 (258)
T d1e32a2 158 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237 (258)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCC
T ss_pred hhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 98 9999999999999999999999999888888889999999999999999999999999999998765544322211
Q ss_pred CCCCCCCCCCCCHHHHHHHHhc
Q 011400 441 PDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 441 ~~d~~~~~~~It~eD~~~AL~~ 462 (487)
..+ .....+||++||+.||.+
T Consensus 238 ~~~-~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 238 DAE-VMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp BHH-HHHHCCBCHHHHHHHHTC
T ss_pred hhh-hhccCccCHHHHHHHhCc
Confidence 100 112346999999999974
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-40 Score=323.92 Aligned_cols=259 Identities=34% Similarity=0.632 Sum_probs=205.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.|.++|+||+|++++|++|.+.+..++.+++.+... ..+++|||||||||||||++|+++|++++.+++.++++++.+.
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 378899999999999999999999999988887654 7888999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|..+..++.+|..|+.+.||||||||+|.++.++.... .......++++.|+..++++.... .++||+|||.|+.|
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~l 159 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDII 159 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-------CCEEEECCBSCTTT
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCchhC
Confidence 9999999999999999999999999999999998765432 233445678899999999886544 47899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||+.+++++.|+.++|.+||+.++++.....+.+++.++.+|+||+++||..+|++|...|+++.....-.
T Consensus 160 d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~~~~~~- 238 (265)
T d1r7ra3 160 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR- 238 (265)
T ss_dssp SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999987 99999999999999999999999988877788899999999999999999999999999999875432111
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
........+....++.+|+..++++
T Consensus 239 -~~~~~~~~~~~~~~~~~d~v~~i~~ 263 (265)
T d1r7ra3 239 -RERERQTNPSAMEVEEDDPVPEIRR 263 (265)
T ss_dssp -------------------CHHHHHH
T ss_pred -HHHHhccCccccccccccchHHHcc
Confidence 1111111122234666777776653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.91 E-value=1.8e-25 Score=215.97 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=129.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc-HHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
..|+++||||||||||||++|+++|++++.+++.+++++...++.+.. .+.++.+|+.|+..+||||||||+|.+...+
T Consensus 37 ~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~ 116 (246)
T d1d2na_ 37 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV 116 (246)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhc
Confidence 367899999999999999999999999999999999988766665544 4678999999999999999999999998765
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHH-HHhhccccccCCCCCHHHHHHHHHHhCCCCCCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 394 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~a-L~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~ 394 (487)
.... ...+.+++.|+..+++......+|+||+|||+|+.+|++ +++||+..+++|.+ .+|.+|++.+... ...
T Consensus 117 ~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~--~~r~~il~~l~~~-~~~ 190 (246)
T d1d2na_ 117 PIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI--ATGEQLLEALELL-GNF 190 (246)
T ss_dssp TTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE--EEHHHHHHHHHHH-TCS
T ss_pred cccc---chhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCc--hhHHHHHHHHHhc-cCC
Confidence 4322 223567788999999887777789999999999999875 66799998887544 3344444433211 112
Q ss_pred CCCCHHHHHHHhcCCc
Q 011400 395 ESLPYDLLVERTEGYS 410 (487)
Q Consensus 395 ~~~~l~~la~~t~G~s 410 (487)
.+.++..+++.+.|..
T Consensus 191 ~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 191 KDKERTTIAQQVKGKK 206 (246)
T ss_dssp CHHHHHHHHHHHTTSE
T ss_pred ChHHHHHHHHHcCCCc
Confidence 2344566777777754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.90 E-value=1.1e-24 Score=217.18 Aligned_cols=180 Identities=22% Similarity=0.299 Sum_probs=143.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh--hccCC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD 283 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~--~~~g~ 283 (487)
.|+|++++|+.|.+++..+..+..+.... ..|++++||+||||||||+||+++|++++.+++.++++++.. .+.|.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 48999999999999886555444333222 247799999999999999999999999999999999999974 58899
Q ss_pred cHHHHHHHHHHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC-------CCcEEEEEE
Q 011400 284 SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAA 351 (487)
Q Consensus 284 se~~l~~~f~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~VlVIat 351 (487)
++..++.+|..+.. .+||||||||+|++++.+..... ......+++.||..+|+.... ...+++|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~-~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ 173 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 173 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCccc-chhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEec
Confidence 99999999988764 35799999999999887654332 223345788899999975321 123556665
Q ss_pred ----eCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 352 ----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 352 ----Tn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
++.+..++++++.||+.++.++.|+..++.+|+..+.
T Consensus 174 ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~ 214 (309)
T d1ofha_ 174 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214 (309)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSST
T ss_pred cchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHH
Confidence 5778899999999999999999999999999987654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.88 E-value=4.4e-25 Score=219.77 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=125.3
Q ss_pred ccCchhhcCC-CCCCeeE-EEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcE
Q 011400 227 IKYPKYFTGL-LSPWKGI-LLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 227 l~~~~~~~~~-~~~~~gv-LL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~I 302 (487)
...+..+..+ ...++|+ ||+||||||||.+|+++|.+++ .+|+.++++++.++|+|++++.++.+|+.++. |||
T Consensus 108 ~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~i 185 (321)
T d1w44a_ 108 GCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRV 185 (321)
T ss_dssp SBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSE
T ss_pred ccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccE
Confidence 3455555554 4555665 5589999999999999999986 78999999999999999999999999999985 799
Q ss_pred EEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc----cHHHHh--hccccccCCCCC
Q 011400 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL----DAAMLR--RLEKRILVPLPD 376 (487)
Q Consensus 303 L~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L----d~aL~r--Rf~~~i~~~~Pd 376 (487)
|||||||.+.+.++.... .....+++++|+..||++.... .|+||+||| |+.+ ++++.+ ||+..+.++.||
T Consensus 186 lf~DEid~~~~~r~~~~~-~~~~~r~v~~lL~e~dg~~~~~-~v~viaatN-~~~~~~~i~~~~~r~~Rf~~~v~v~~pd 262 (321)
T d1w44a_ 186 IVIDSLKNVIGAAGGNTT-SGGISRGAFDLLSDIGAMAASR-GCVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTD 262 (321)
T ss_dssp EEEECCTTTC------------CCHHHHHHHHHHHHHHHHH-TCEEEEECC-CCCCCHHHHHHHHHHHHHSCSEEEEECS
T ss_pred EEeehhhhhccccccCCC-CCcchhhhhhhhhhccccccCC-CeEEEEeCC-CcccccchhhhhhccCcccceeecCCCC
Confidence 999999999998864332 3334579999999999886554 488999999 4544 445555 999999999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 011400 377 TEARRAMFESLLPSQT 392 (487)
Q Consensus 377 ~eeR~~IL~~~l~~~~ 392 (487)
.+.|.+||+.+.....
T Consensus 263 ~~~r~~il~~~~~~~~ 278 (321)
T d1w44a_ 263 VDGEWQVLTRTGEGLQ 278 (321)
T ss_dssp STTEEEEEEECBTTCC
T ss_pred hHHHHHHHHHhccCcc
Confidence 9999999988765543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.7e-21 Score=183.91 Aligned_cols=215 Identities=18% Similarity=0.180 Sum_probs=151.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 281 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~ 281 (487)
++.+|+|++|+++++++|..++..+.... .+..++|||||||||||++|+++|++++.+++.++..+..
T Consensus 4 RP~~~~divGqe~~~~~l~~~i~~~~~~~-------~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~---- 72 (238)
T d1in4a2 4 RPKSLDEFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV---- 72 (238)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHT-------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC----
T ss_pred CCCcHHHcCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccc----
Confidence 34579999999999999999986543222 3456899999999999999999999999999999877663
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC---------------cCCCCcE
Q 011400 282 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELV 346 (487)
Q Consensus 282 g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------------~~~~~~V 346 (487)
....+...+.. ....++++|||+|.+....++ .++..++.. .....++
T Consensus 73 --~~~~~~~~~~~--~~~~~~~~ide~~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (238)
T d1in4a2 73 --KQGDMAAILTS--LERGDVLFIDEIHRLNKAVEE-------------LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 135 (238)
T ss_dssp --SHHHHHHHHHH--CCTTCEEEEETGGGCCHHHHH-------------HHHHHHHTSCCCC---------------CCC
T ss_pred --cHHHHHHHHHh--hccCCchHHHHHHHhhhHHHh-------------hcccceeeeeeeeeecCcccccccccCCCCe
Confidence 22334444433 234589999999998644221 122222211 0122357
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
++|++||.+..+++++++||...+.++.|+.+++..+++..+......... .++.++..+.| +.+.+-.+++.+...+
T Consensus 136 ~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~ 214 (238)
T d1in4a2 136 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 214 (238)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999888665554333 36667777765 4455555555543332
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
... ....||.+++.++++..
T Consensus 215 ~~~------------------~~~~it~~~~~~al~~l 234 (238)
T d1in4a2 215 TVV------------------KADRINTDIVLKTMEVL 234 (238)
T ss_dssp HHH------------------TCSSBCHHHHHHHHHHH
T ss_pred HHh------------------cCCccCHHHHHHHHHhh
Confidence 221 11238999999998754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.3e-20 Score=179.43 Aligned_cols=216 Identities=19% Similarity=0.148 Sum_probs=145.9
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 281 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~ 281 (487)
++.+|+|++|+++++++|..++....... .++.++|||||||||||++|+++|++++.++..++++.....
T Consensus 4 RP~~~ddivGq~~~~~~L~~~i~~~~~~~-------~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~-- 74 (239)
T d1ixsb2 4 RPKTLDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 74 (239)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHHTTSS-------SCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc--
Confidence 45689999999999999999986654321 356789999999999999999999999999999998765321
Q ss_pred CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC---------------cCCCCcE
Q 011400 282 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELV 346 (487)
Q Consensus 282 g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------------~~~~~~V 346 (487)
........... ...+|++|||+|.+....+ ..++..++.. ......+
T Consensus 75 ----~~~~~~~~~~~-~~~~i~~iDe~~~~~~~~~-------------~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (239)
T d1ixsb2 75 ----GDLAAILANSL-EEGDILFIDEIHRLSRQAE-------------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 136 (239)
T ss_dssp ----HHHHHHHHTTC-CTTCEEEEETGGGCCHHHH-------------HHHHHHHHHSEEEEECSCTTCCCEEEEECCCC
T ss_pred ----hhhHHHHHhhc-cCCCeeeeecccccchhHH-------------HhhhhhhhhhhhhhhhccchhhhhcccCCCCE
Confidence 11222222111 2346999999998854321 1123333211 0112345
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
.++++|+++...+.+.++|+...+.+..|+.+++..++...+.......+ ..++.++..+.|-. +....+++.+...
T Consensus 137 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~-R~a~~~l~~~~~~- 214 (239)
T d1ixsb2 137 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRVRDF- 214 (239)
T ss_dssp EEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSH-HHHHHHHHHHHHH-
T ss_pred EEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCH-HHHHHHHHHHHHH-
Confidence 67788888888777888888888999999999999999988876655433 23667888888733 3332333322111
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
.. ......||.+++.++|..+
T Consensus 215 -------a~----------~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 215 -------AQ----------VAGEEVITRERALEALAAL 235 (239)
T ss_dssp -------HT----------TSCCSCBCHHHHHHHHHHH
T ss_pred -------HH----------HhCCCCcCHHHHHHHHhhh
Confidence 00 1112448999999999754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.3e-18 Score=163.90 Aligned_cols=211 Identities=19% Similarity=0.210 Sum_probs=139.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----cEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----~~i~v 271 (487)
|.+.+.+.+|+|++|++++++.|+.++... ...++||+||||||||++|+++|++++. .++..
T Consensus 4 w~ekyrP~~~~divg~~~~~~~L~~~i~~~------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~ 71 (227)
T d1sxjc2 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 71 (227)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hhhhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEe
Confidence 455667889999999999999999988542 1235999999999999999999999742 35566
Q ss_pred ecccchhhccCCcHHHHHHHHHHH-H-----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCc
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELA-R-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a-~-----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 345 (487)
+.++..+. .......... . .....+++|||+|.+... ..+.|+..++.. ...
T Consensus 72 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~~---~~~ 129 (227)
T d1sxjc2 72 NASDDRGI------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKN 129 (227)
T ss_dssp CTTSCCSH------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTT
T ss_pred cccccCCe------eeeecchhhccccccccCCCeEEEEEeccccchhh-------------HHHHHHHHhhhc---ccc
Confidence 65554322 1111111111 1 122359999999987533 223456666532 334
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+.+++++|.+..+++++++|+. .+.|..|+.++...++...+.......+ ..++.+++.+.|
T Consensus 130 ~~~~~~~~~~~~i~~~i~sr~~-~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G---------------- 192 (227)
T d1sxjc2 130 TRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG---------------- 192 (227)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT----------------
T ss_pred eeeccccCcHHHhHHHHHHHHh-hhccccccccccccccccccccccccCCHHHHHHHHHHcCC----------------
Confidence 6778899999999999999995 4899999999999999988765544322 224445555544
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 425 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 425 a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
.+|++++.++....... ......||.+++.+++.
T Consensus 193 d~R~ain~Lq~~~~~~~---~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 193 DMRRVLNVLQSCKATLD---NPDEDEISDDVIYECCG 226 (227)
T ss_dssp CHHHHHHHTTTTTTTTC---SSSCCCBCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcC---CCCCCeeCHHHHHHHhC
Confidence 34555555543221111 12224589999999875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=1.4e-18 Score=164.32 Aligned_cols=183 Identities=21% Similarity=0.185 Sum_probs=130.1
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEE
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFF 269 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i 269 (487)
+.|...+.+.+|+|++|++++++.|+.++... ...++||+||||||||++|+++|++++ ..++
T Consensus 12 ~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~ 79 (231)
T d1iqpa2 12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 79 (231)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred chHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCee
Confidence 44666777889999999999999999988542 234799999999999999999999874 4688
Q ss_pred EEecccchhhccCCcHHHHHHHHH--HHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~--~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
++++++..+... .......... ......+.|+++||+|.+.... ...|+..++. ....+.
T Consensus 80 e~n~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~-------------~~~ll~~l~~---~~~~~~ 141 (231)
T d1iqpa2 80 ELNASDERGINV--IREKVKEFARTKPIGGASFKIIFLDEADALTQDA-------------QQALRRTMEM---FSSNVR 141 (231)
T ss_dssp EEETTCHHHHHT--THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH-------------HHHHHHHHHH---TTTTEE
T ss_pred EEecCcccchhH--HHHHHHHHHhhhhccCCCceEEeehhhhhcchhH-------------HHHHhhhccc---CCcceE
Confidence 888876543211 1111111111 1123356799999999875431 2234555542 234467
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+|++||.+..+++++++|+.. +.++.|+..+...+++..+....... +..++.+++.+.|
T Consensus 142 ~i~~~n~~~~i~~~l~sR~~~-i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g 202 (231)
T d1iqpa2 142 FILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 202 (231)
T ss_dssp EEEEESCGGGSCHHHHHTEEE-EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred EEeccCChhhchHhHhCcccc-ccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 889999999999999999954 99999999999999999987665532 2235666766665
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2e-17 Score=157.77 Aligned_cols=176 Identities=22% Similarity=0.255 Sum_probs=124.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
.++++.+|+|++|++++++.|..++... ..++++||+||||||||++|++++++++..
T Consensus 4 ~KyrP~~~~dlig~~~~~~~L~~~i~~~-----------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~ 72 (239)
T d1njfa_ 4 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 72 (239)
T ss_dssp HHTCCSSGGGSCSCHHHHHHHHHHHHTT-----------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hhhCCCCHHHccChHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence 3466789999999999999999988542 345679999999999999999999987332
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++.++. .....++.+++.+.. ....|++|||+|.|... ..+
T Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~------~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-------------~q~ 133 (239)
T d1njfa_ 73 DNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFN 133 (239)
T ss_dssp HHHHHHHHTCCTTEEEEETTCS------SSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHH
T ss_pred hHHHHHHcCCCCeEEEecchhc------CCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHH-------------HHH
Confidence 344443321 122345555554432 22359999999988432 234
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
.|+..|+. ....+.+|++||.++.+.+++++||. .+.++.|+.++...++...+....... +..++.++..+.|
T Consensus 134 ~Llk~lE~---~~~~~~~il~tn~~~~i~~~i~SRc~-~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G 208 (239)
T d1njfa_ 134 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 208 (239)
T ss_dssp HHHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT
T ss_pred HHHHHHhc---CCCCeEEEEEcCCccccChhHhhhhc-ccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC
Confidence 57788873 33446788899999999999999994 589999999998888888775444332 2235556666655
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=9.7e-18 Score=159.98 Aligned_cols=201 Identities=20% Similarity=0.190 Sum_probs=128.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCch-hh----cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPK-YF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~-~~----~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
|...+.+.+|+|++|.++.+++|.+++........ .+ .....+.+++||+||||||||++|+++|++++.+++.+
T Consensus 4 W~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~ 83 (253)
T d1sxja2 4 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 83 (253)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 44557788999999999999999998865322111 11 11134557899999999999999999999999999999
Q ss_pred ecccchhhccCCcHHHHHHH---------H-----HHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 272 SASSVVSKWRGDSEKLIKVL---------F-----ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~---------f-----~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
++++..+.+... ..+... + .......+.++++||+|.+...... ....++....
T Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~----------~~~~~~~~~~ 151 (253)
T d1sxja2 84 NASDVRSKTLLN--AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCR 151 (253)
T ss_dssp CTTSCCCHHHHH--HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHH
T ss_pred ccccchhhHHHH--HHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhh----------hhHHHhhhhc
Confidence 988765432100 000000 0 0001123569999999998654221 1122333322
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHH
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRL 416 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~ 416 (487)
.....++++++++....++ .+++|+ ..+.|+.|+.+++..+++.++...... .+..++.+++.+.| ||+.
T Consensus 152 ---~~~~~ii~i~~~~~~~~~~-~l~~~~-~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ 222 (253)
T d1sxja2 152 ---KTSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQ 222 (253)
T ss_dssp ---HCSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHH
T ss_pred ---ccccccccccccccccccc-ccccee-eeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHH
Confidence 2223455555555545555 455555 669999999999999999988654433 23346778887765 6655
Q ss_pred HH
Q 011400 417 VS 418 (487)
Q Consensus 417 L~ 418 (487)
++
T Consensus 223 ai 224 (253)
T d1sxja2 223 VI 224 (253)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=8.7e-17 Score=151.60 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=122.8
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------CCcEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFN 270 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------~~~~i~ 270 (487)
|...+.+.+|+|++|++++++.|+.++... ...++||+||||||||++++++|+++ ....+.
T Consensus 2 w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~ 69 (237)
T d1sxjd2 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE 69 (237)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred cchhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhh
Confidence 345577889999999999999999877431 12359999999999999999999986 466677
Q ss_pred Eecccchhhc-cCCcHHHHH---------HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 271 ISASSVVSKW-RGDSEKLIK---------VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 271 v~~~~l~~~~-~g~se~~l~---------~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
++.+...+.. .....+... ............|++|||+|.+.... .+.++..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~-------------~~~l~~~~~~-- 134 (237)
T d1sxjd2 70 LNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-------------QSALRRTMET-- 134 (237)
T ss_dssp ECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-------------HHHHHHHHHH--
T ss_pred eeccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHH-------------HHHHhhcccc--
Confidence 7765543221 111101000 00011111223499999999885431 1223333431
Q ss_pred CCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 341 QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
......+|.+++....+.+++++|| ..+.|..|+.++...+|+..+.......+ ..++.+++.+.|
T Consensus 135 -~~~~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g 201 (237)
T d1sxjd2 135 -YSGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 201 (237)
T ss_dssp -TTTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred -ccccccccccccccccccccccchh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC
Confidence 2233556778888889999999999 55899999999999999998876555432 235677777766
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=8.5e-17 Score=151.34 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=125.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----cEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----~~i~v 271 (487)
|.+.+.+.+|+|++|++++++.|+.++... ...++||+||||||||++|+.+|++++. .++.+
T Consensus 5 w~eKyrP~~~~d~ig~~~~~~~L~~~~~~~------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~ 72 (224)
T d1sxjb2 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 72 (224)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hHhHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCeEEEECCCCCCchhhHHHHHHHHhccccccccccc
Confidence 455678889999999999999999988542 1236999999999999999999999853 47777
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHh-------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~-------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
++++..+ ...+...+..... ..+.+++|||+|.+....+ +.|+..++ ....
T Consensus 73 n~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~-------------~~ll~~~e---~~~~ 130 (224)
T d1sxjb2 73 NASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ-------------QALRRTME---LYSN 130 (224)
T ss_dssp CTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH-------------HTTHHHHH---HTTT
T ss_pred cccccCC------ceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHH-------------HHHhhhcc---cccc
Confidence 7766532 2222222222211 2345999999998865422 22444554 2233
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
...++.+++....+.+++++||. .+.|+.|+.++...++...+.......+ ..++.++..+.|
T Consensus 131 ~~~~i~~~~~~~~i~~~l~sr~~-~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G 194 (224)
T d1sxjb2 131 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 194 (224)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred ceeeeeccCchhhhhhHHHHHHH-HhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence 45677788888999999999995 5999999999999999988865544322 224556666555
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.4e-16 Score=149.87 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=116.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA 273 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~ 273 (487)
|.+.+.+.+|+|++|.+++++.|+.++... ....++||+||||||||++|+++|+++. .....++.
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~-----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~ 69 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 69 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred CCcccCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccc
Confidence 345677889999999999999998766432 1234699999999999999999999862 11111111
Q ss_pred ccch----------------------hhccCCcHHHHHHHHHHHH--------------hcCCcEEEechhhhHHhhhcc
Q 011400 274 SSVV----------------------SKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 274 ~~l~----------------------~~~~g~se~~l~~~f~~a~--------------~~~p~IL~IDEiD~L~~~r~~ 317 (487)
.... ................... .....+++|||+|.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~--- 146 (252)
T d1sxje2 70 RQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD--- 146 (252)
T ss_dssp -------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH---
T ss_pred ccccccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc---
Confidence 0000 0000011111122211111 112349999999987432
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC--C
Q 011400 318 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE--E 395 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~--~ 395 (487)
..+.++..++. ....+.+|++||.++.+++++++||. .++|+.|+.++..++++..+...... .
T Consensus 147 ----------~~~~l~~~~e~---~~~~~~~Il~tn~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~l~~i~~~e~~~~~~ 212 (252)
T d1sxje2 147 ----------AQAALRRTMEK---YSKNIRLIMVCDSMSPIIAPIKSQCL-LIRCPAPSDSEISTILSDVVTNERIQLET 212 (252)
T ss_dssp ----------HHHHHHHHHHH---STTTEEEEEEESCSCSSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred ----------cchhhhccccc---ccccccceeeeccccchhhhhhcchh-eeeecccchhhHHHHHHHHHHHcCCCCCc
Confidence 12334455542 23446678899999999999999994 68999999999999998887554332 2
Q ss_pred CCCHHHHHHHhcC
Q 011400 396 SLPYDLLVERTEG 408 (487)
Q Consensus 396 ~~~l~~la~~t~G 408 (487)
+..++.++..+.|
T Consensus 213 ~~~l~~i~~~s~G 225 (252)
T d1sxje2 213 KDILKRIAQASNG 225 (252)
T ss_dssp SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC
Confidence 2235667776665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.67 E-value=3.3e-15 Score=142.19 Aligned_cols=228 Identities=16% Similarity=0.087 Sum_probs=144.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 275 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~ 275 (487)
-.|.+..+.++|.+..++.|.+++...+..+. .++.++||+||||||||++|+++++.+ +..++.+++..
T Consensus 9 l~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~------~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~ 82 (276)
T d1fnna2 9 FSPSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 82 (276)
T ss_dssp GSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTT------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC------CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchh
Confidence 34566677899999999999998865544332 466799999999999999999999987 45667776644
Q ss_pred chhh----------------ccCCcH-HHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 276 VVSK----------------WRGDSE-KLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 276 l~~~----------------~~g~se-~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ..+... .....+...... ..+.++++|++|.+.... ......++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~~~~~~~~~ 152 (276)
T d1fnna2 83 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI----------LSTFIRLGQEAD 152 (276)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHH----------HHHHHHHTTCHH
T ss_pred hhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhh----------hhhHHHHHhccc
Confidence 3211 112222 223333333333 345688899998775331 111111211111
Q ss_pred CCcCCCCcEEEEEEeCCC---CcccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCCC---CCCHHHHHHHhcC--
Q 011400 338 GLTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEE---SLPYDLLVERTEG-- 408 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~~---~~~l~~la~~t~G-- 408 (487)
......+.+|++++.. +.+++++.+|+. ..+.++.|+.++..+|++.++....... +..++.+++.+..
T Consensus 153 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~ 230 (276)
T d1fnna2 153 --KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 230 (276)
T ss_dssp --HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred --cccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhh
Confidence 1123346677788775 457888888764 4588999999999999998765432222 2225556666532
Q ss_pred ------CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 409 ------YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 409 ------~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
-+++.+..+|+.|+..|..+ ....|+.+|+++|++++
T Consensus 231 ~~~~~~G~~R~a~~ll~~a~~~A~~~------------------~~~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 231 PLDTNRGDARLAIDILYRSAYAAQQN------------------GRKHIAPEDVRKSSKEV 273 (276)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHHH
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHc------------------CCCCcCHHHHHHHHHHH
Confidence 13456666777776554432 11359999999999875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=4.6e-16 Score=150.65 Aligned_cols=225 Identities=23% Similarity=0.296 Sum_probs=152.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 272 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~ 272 (487)
.-+++.++|.++..++|.+.+.. ...+++||.||||+|||.+++.+|+.+ +..++.++
T Consensus 14 ~~~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~ 81 (268)
T d1r6bx2 14 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 81 (268)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCcccChHHHHHHHHHHHhc------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEee
Confidence 34578999999999999988844 234689999999999999999999965 57899999
Q ss_pred cccchh--hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 273 ASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 273 ~~~l~~--~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
.+.+.. +|.|+.+..++.+++.+......||||||++.|.+.....++... +...+.....++. +.+|+
T Consensus 82 ~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d--------~a~~Lkp~L~rg~-i~vIg 152 (268)
T d1r6bx2 82 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD--------AANLIKPLLSSGK-IRVIG 152 (268)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH--------HHHHHSSCSSSCC-CEEEE
T ss_pred echHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCcccc--------HHHHhhHHHhCCC-CeEEE
Confidence 999886 789999999999999998888899999999999875433222111 3344444444444 55666
Q ss_pred EeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----CCC-CCCHHHHHHHhc------CCcHHHH
Q 011400 351 ATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GEE-SLPYDLLVERTE------GYSGSDI 414 (487)
Q Consensus 351 tTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~----~~~-~~~l~~la~~t~------G~sg~dI 414 (487)
+|... ..-|++|.+||.. |.+..|+.++-..|++....... ... +..+..++..+. .+.+..|
T Consensus 153 atT~eey~~~~e~d~al~rrF~~-I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAI 231 (268)
T d1r6bx2 153 STTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 231 (268)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred eCCHHHHHHHHhhcHHHHhhhcc-cccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHH
Confidence 66533 3468899999965 99999999999999987553322 111 112333333322 3455555
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 415 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 415 ~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
. ++.+|+..+-. . .. ......|+.+|++..+.++.
T Consensus 232 d-llDea~a~~~~------~------~~--~~~~~~i~~~di~~~i~~~~ 266 (268)
T d1r6bx2 232 D-VIDEAGARARL------M------PV--SKRKKTVNVADIESVVARIA 266 (268)
T ss_dssp H-HHHHHHHHHHH------S------SS--CCCCCSCCHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHh------h------cc--ccCcccCCHHHHHHHHHHHh
Confidence 5 55555433211 0 00 11124589999998887653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.63 E-value=4.7e-15 Score=141.91 Aligned_cols=235 Identities=12% Similarity=0.008 Sum_probs=140.9
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~ 272 (487)
+....+.+.|.+...+.|.+++..+....... ..+...++|+||||||||++++++++++. ..+..++
T Consensus 11 ~~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~---~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~ 87 (287)
T d1w5sa2 11 ENYIPPELRVRRGEAEALARIYLNRLLSGAGL---SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 87 (287)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCB---CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHHcCCCC---CCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec
Confidence 44556789999999999888775544322100 01223467899999999999999999872 3445555
Q ss_pred cccchhh----------------ccCCcHHHHHH-HHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 273 ASSVVSK----------------WRGDSEKLIKV-LFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 273 ~~~l~~~----------------~~g~se~~l~~-~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
+...... ..+.....+.. +..... ...+.++++||+|.+....+.. ......+..+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~----~~~~~~l~~l~~ 163 (287)
T d1w5sa2 88 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA----AEDLYTLLRVHE 163 (287)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC----HHHHHHHHTHHH
T ss_pred cccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc----hhHHHHHHHHHH
Confidence 5443221 12333333333 333332 2345688899999997653321 111222233344
Q ss_pred HhcCCcCCCCcEEEEEEeCCCCc------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC---CHHHHHHH
Q 011400 335 QMDGLTQSDELVFVLAATNLPWE------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL---PYDLLVER 405 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p~~------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~---~l~~la~~ 405 (487)
.+....... .+.+|+.++.++. .++++.+||...++++.|+.++..+|++..+......... .++.+|+.
T Consensus 164 ~l~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~ 242 (287)
T d1w5sa2 164 EIPSRDGVN-RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 242 (287)
T ss_dssp HSCCTTSCC-BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred hcchhhccc-ceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHH
Confidence 444333332 3445555555533 3467788999999999999999999999876432222222 26667777
Q ss_pred hcCC-----cHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 406 TEGY-----SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 406 t~G~-----sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
+..+ ..+..-.++++|+..|..+ ....||.+|+++|+++
T Consensus 243 ~~~~~~~~gd~R~ai~~l~~a~~~A~~~------------------~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 243 YGEDKGGDGSARRAIVALKMACEMAEAM------------------GRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHH
T ss_pred HhccccCCCCHHHHHHHHHHHHHHHHHc------------------CCCCCCHHHHHHHHhc
Confidence 6432 3445556677766554331 1135999999999874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.1e-16 Score=144.56 Aligned_cols=170 Identities=22% Similarity=0.359 Sum_probs=121.8
Q ss_pred HHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------
Q 011400 192 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 264 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------- 264 (487)
+...++......-+++.++|.++..+++.+.+... ...+++|.||||+|||++++.+|+.+
T Consensus 7 ~~~~dlt~~a~~g~ld~~igRd~Ei~~l~~iL~r~------------~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~ 74 (195)
T d1jbka_ 7 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPE 74 (195)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCG
T ss_pred HHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHhcc------------CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCH
Confidence 34444444444556889999999999999888542 34689999999999999999999966
Q ss_pred ---CCcEEEEecccchh--hccCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 265 ---KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 265 ---~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
+.+++.++.+.+.+ +|.|+.+..++.+++.+.... ..||||||++.+.+.....+ ..... +-|.-.+.
T Consensus 75 ~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g-~~d~~----~~Lkp~L~- 148 (195)
T d1jbka_ 75 GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAG----NMLKPALA- 148 (195)
T ss_dssp GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCH----HHHHHHHH-
T ss_pred HHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCC-cccHH----HHHHHHHh-
Confidence 57899999999885 577899999999998876544 57999999999976532211 11111 22333332
Q ss_pred CcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 339 LTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
++. +.+|++|... -.-|++|.+||.. |.+..|+.++-..||
T Consensus 149 ---rg~-l~~IgatT~eey~~~~e~d~aL~rrF~~-I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 149 ---RGE-LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---TTS-CCEEEEECHHHHHHHTTTCHHHHTTEEE-EECCCCCHHHHHTTC
T ss_pred ---CCC-ceEEecCCHHHHHHHHHcCHHHHhcCCE-eecCCCCHHHHHHHh
Confidence 233 4466666533 2469999999966 999999999877665
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=1.5e-14 Score=135.66 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=123.0
Q ss_pred CCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 201 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 201 ~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.|+.+|++.+ | .+.+...+++++..+- ...+.++||||||||||+|++++++++ +..+++++..
T Consensus 4 n~~~tFdnF~vg~~N~~a~~~~~~~~~~~~----------~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~ 73 (213)
T d1l8qa2 4 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 73 (213)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCChhhccCCCcHHHHHHHHHHHHhCcC----------CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence 4678899954 5 4556666666654431 122459999999999999999999987 5678888877
Q ss_pred cchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 275 SVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 275 ~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
++...+...... ....+++... ...+|+|||+|.+.++.. ....|...++.....+. .+|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~~~-----------~~~~lf~lin~~~~~~~-~iiits~~ 139 (213)
T d1l8qa2 74 DFAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLLEK-QIILASDR 139 (213)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred HHHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCchH-----------HHHHHHHHHHHHhhccc-eEEEecCC
Confidence 765543322111 1222332222 347999999999975421 22224444443333444 44566666
Q ss_pred CCCc---ccHHHHhhccc--cccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHH
Q 011400 354 LPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 354 ~p~~---Ld~aL~rRf~~--~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
.|.. +.+.+.+|+.. .+.++ |+.++|.++++.++...+...+ ..++.+++.+. +.++|..+++.
T Consensus 140 ~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~ 209 (213)
T d1l8qa2 140 HPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKL 209 (213)
T ss_dssp CGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred cchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 6654 45889999853 45565 6778999999999877665533 33566777764 46777766554
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.57 E-value=4.1e-17 Score=165.03 Aligned_cols=177 Identities=17% Similarity=0.076 Sum_probs=112.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc-cCCcHHHHHHHHHHH------HhcCCcEEEechhhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW-RGDSEKLIKVLFELA------RHHAPSTIFLDEIDA 310 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~-~g~se~~l~~~f~~a------~~~~p~IL~IDEiD~ 310 (487)
+..+++|||||||||||++|+++|+.++.+++++++++..+.+ .+........+|+.+ ....|+++++||+|.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~ 231 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDN 231 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHT
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhh
Confidence 5567999999999999999999999999999999998876553 332222222233322 223466777777777
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC---CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHH-HHHHH
Q 011400 311 IISQRGEARSEHEASRRLKTELLIQMDGLTQSD---ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR-AMFES 386 (487)
Q Consensus 311 L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~---~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~-~IL~~ 386 (487)
|...++...... ++...... ....+|+|||..+. +.....||+..+.+..|+...+. +++..
T Consensus 232 l~~~~dg~~~~~-------------~~~~~~~~~~~~~~p~i~ttN~~~~-~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~ 297 (362)
T d1svma_ 232 LRDYLDGSVKVN-------------LEKKHLNKRTQIFPPGIVTMNEYSV-PKTLQARFVKQIDFRPKDYLKHCLERSEF 297 (362)
T ss_dssp THHHHHCSSCEE-------------ECCSSSCCEEECCCCEEEEECSCCC-CHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cccccCCcchhh-------------hhhhhhchhhhccCCceeecccccc-cccccccCceEEeecCCCcHHHHHHHHHH
Confidence 654432211000 00000000 00126779996431 22222399999999888776664 34444
Q ss_pred hCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 387 LLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 387 ~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
++..... ..+.+.++..+.+++++|+..++++++....++..
T Consensus 298 i~~~~~l--~~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~ 339 (362)
T d1svma_ 298 LLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD 339 (362)
T ss_dssp HHHTTCT--TCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHH
T ss_pred HhcccCC--CCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4444333 34567788999999999999999998887776643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.50 E-value=7e-14 Score=139.13 Aligned_cols=157 Identities=24% Similarity=0.314 Sum_probs=99.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC----------------
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------------- 265 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------------- 265 (487)
|.+.|.+|+|++.+|+.|.-.+..+ ..+||||.||||||||++||+++.-+.
T Consensus 2 ~~~~f~~I~Gq~~~kral~laa~~~------------~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~ 69 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 69 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCChhhccCcHHHHHHHHHHHhcc------------CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence 4567999999999999877655432 125799999999999999999998651
Q ss_pred -----------------CcEEEEecccchhhccCCc--HHHHH--------HHHHHHHhcCCcEEEechhhhHHhhhccc
Q 011400 266 -----------------TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEA 318 (487)
Q Consensus 266 -----------------~~~i~v~~~~l~~~~~g~s--e~~l~--------~~f~~a~~~~p~IL~IDEiD~L~~~r~~~ 318 (487)
.+++......-.+...|.. ..... ..+..| + .+|+||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A--~-~gvl~iDEi~~~~------ 140 (333)
T d1g8pa_ 70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARA--N-RGYLYIDECNLLE------ 140 (333)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHH--T-TEEEEETTGGGSC------
T ss_pred cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccc--c-ccEeecccHHHHH------
Confidence 1122221111111111110 00000 011122 1 2799999998764
Q ss_pred chhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCC-CcccHHHHhhccccccCCCC-CHHHHHHHHHH
Q 011400 319 RSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFES 386 (487)
Q Consensus 319 ~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p-~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~ 386 (487)
..+++.|++.|+.-. ..+...++++|+|.. ..+++++++||+..+.++.| +.+.+.++...
T Consensus 141 -------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~ 213 (333)
T d1g8pa_ 141 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 213 (333)
T ss_dssp -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred -------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHh
Confidence 346677888886321 012346778888865 45999999999988888876 66666665544
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2e-13 Score=135.19 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=134.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-----cc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----WR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~-----~~ 281 (487)
..|+|++++++.+.+.+...... ....-.|...+||.||||||||.||+++|..++.+++.++++++... ..
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~---l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~ 98 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 98 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred CeecChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence 57999999999999988543211 01112344578999999999999999999999999999999887543 22
Q ss_pred CCcH----HHH-HHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEE
Q 011400 282 GDSE----KLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFV 348 (487)
Q Consensus 282 g~se----~~l-~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlV 348 (487)
|... ... ..+.........+|+++||+|+..+ .+.+.|++.++.-. ..-...++
T Consensus 99 g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-------------~V~~~lLqild~G~ltd~~Gr~vdf~n~ii 165 (315)
T d1r6bx3 99 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNVVL 165 (315)
T ss_dssp CCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred ccCCCccccccCChhhHHHHhCccchhhhcccccccc-------------hHhhhhHHhhccceecCCCCCccCccceEE
Confidence 2211 111 1133344556678999999998743 35566777775311 12245778
Q ss_pred EEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC-------CC--
Q 011400 349 LAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT-------GE-- 394 (487)
Q Consensus 349 IatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~-------~~-- 394 (487)
|+|+|-.. .+.|.++.|++.++.+.+.+.++..+|+...+.... ..
T Consensus 166 I~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~ 245 (315)
T d1r6bx3 166 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLE 245 (315)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 88998431 257788889999999999999998888776653221 11
Q ss_pred -CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 011400 395 -ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 395 -~~~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
.+..++.+++. ...+-.+.|+.++++-....+.+
T Consensus 246 ~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~ 282 (315)
T d1r6bx3 246 VSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 282 (315)
T ss_dssp ECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHH
Confidence 11123445443 23344466666666655555554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=2.4e-14 Score=145.50 Aligned_cols=177 Identities=20% Similarity=0.339 Sum_probs=115.1
Q ss_pred HHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------
Q 011400 192 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 264 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------- 264 (487)
+.++++......-+++.++|.+...+++.+.+.. ...++++|.||||+|||.++..+|..+
T Consensus 7 ~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~ 74 (387)
T d1qvra2 7 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE 74 (387)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred HHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHhc------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCH
Confidence 4445555544556789999999999999998854 234678999999999999999999865
Q ss_pred ---CCcEEEEecccchh--hccCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 265 ---KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 265 ---~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
+..++.++.+.+.. +|.|+.+..+..++..+.... +.||||||++.+.+.....+ ... +.+-|.-.+.
T Consensus 75 ~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g-~~d----~a~~Lkp~L~- 148 (387)
T d1qvra2 75 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVD----AGNMLKPALA- 148 (387)
T ss_dssp TSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH-
T ss_pred HHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCC-ccc----HHHHHHHHHh-
Confidence 56799999999986 678999999999999887764 67899999999987533211 111 2222322332
Q ss_pred CcCCCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC
Q 011400 339 LTQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
++. +-+|++|..- -.-|++|.|||.. |.+..|+.++-..||+.....+
T Consensus 149 ---rg~-~~~I~~tT~~ey~~~e~d~al~rrF~~-v~v~ep~~~~~~~il~~~~~~~ 200 (387)
T d1qvra2 149 ---RGE-LRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKY 200 (387)
T ss_dssp ---TTC-CCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred ---CCC-cceeeecCHHHHHHhcccHHHHHhccc-ccCCCCcHHHHHHHHHHHHHHH
Confidence 233 4466666532 1247889999965 9999999999999999876444
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=3.8e-13 Score=133.17 Aligned_cols=205 Identities=23% Similarity=0.291 Sum_probs=134.7
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
+.|+|++++++.+...+...... ......|...+||+||+|+|||.+|+.+|+.+ +.+++.++++++...
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~---l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 99 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhh
Confidence 45899999999998887543210 01112344467899999999999999999998 688999998777532
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 343 (487)
|+|..+. ..+.+..+.+..+|+++||||++.+ .+.+.|+..++.-. ..-
T Consensus 100 ~L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DEieK~~~-------------~v~~~ll~~l~~g~~~~~~gr~v~~ 164 (315)
T d1qvra3 100 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTDSHGRTVDF 164 (315)
T ss_dssp GC----------------CHHHHHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hhcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEehHhhcCH-------------HHHHHHHHHhccCceeCCCCcEecC
Confidence 3332211 2244455566679999999998753 35566777776421 112
Q ss_pred CcEEEEEEeCCC--------------------------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC------
Q 011400 344 ELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ------ 391 (487)
Q Consensus 344 ~~VlVIatTn~p--------------------------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~------ 391 (487)
...++|+|||-- ..+.+.++.||+.++.|.+.+.++..+|+...+...
T Consensus 165 ~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~ 244 (315)
T d1qvra3 165 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 244 (315)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 458889999952 237889999999999999999999988887554221
Q ss_pred -CCCC---CCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 392 -TGEE---SLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 392 -~~~~---~~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
.... +...+.|++. ...+-++.|+.++++.....+.+.
T Consensus 245 ~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~~ 288 (315)
T d1qvra3 245 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 288 (315)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred ccccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 1111 1124556654 334555677777777666665543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=5.5e-13 Score=124.07 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=102.2
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC------------------------
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------------------ 266 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~------------------------ 266 (487)
+++.+.++|...+... ..++++||+||||+|||++|+.+|+.+..
T Consensus 6 w~~~~~~~l~~~~~~~-----------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (207)
T ss_dssp GGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred ccHHHHHHHHHHHHcC-----------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence 5667777777776442 35677999999999999999999997721
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
.++.+....- ...-....++.+.+.+.. ....|++|||+|.+... ..+.|+..|+. .
T Consensus 75 ~~~~~~~~~~---~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-------------a~n~Llk~lEe---p 135 (207)
T d1a5ta2 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (207)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred ccchhhhhhc---ccccccchhhHHhhhhhhccccCccceEEechhhhhhhh-------------hhHHHHHHHHh---h
Confidence 1222221110 001123445555554432 23459999999988532 34568888873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 343 ~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
...+.+|.+|+.+..+.+++++|+ ..+.|+.|+.++...+++...
T Consensus 136 ~~~~~fIl~t~~~~~ll~tI~SRc-~~i~~~~~~~~~~~~~L~~~~ 180 (207)
T d1a5ta2 136 PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV 180 (207)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC
T ss_pred cccceeeeeecChhhhhhhhccee-EEEecCCCCHHHHHHHHHHcC
Confidence 455778889999999999999999 559999999999888886543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.35 E-value=1.1e-12 Score=132.39 Aligned_cols=181 Identities=20% Similarity=0.310 Sum_probs=113.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchh------------------hcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~------------------~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
.-|+|++++|+.+..++....++-.. ......|+.++||.||+|||||.+||++|..++.+|
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ 96 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 96 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence 45899999999998777432211100 011135778899999999999999999999999999
Q ss_pred EEEecccchh-hccCC-cHHHHHHHHHH----HHhcCCcEEEechhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCcC
Q 011400 269 FNISASSVVS-KWRGD-SEKLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQ 341 (487)
Q Consensus 269 i~v~~~~l~~-~~~g~-se~~l~~~f~~----a~~~~p~IL~IDEiD~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~ 341 (487)
+.++++.+.. .|+|. ....+..+... .+....+|+++||+|.+.+........ ......+.+.|++.+++-..
T Consensus 97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~ 176 (364)
T d1um8a_ 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 176 (364)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCcee
Confidence 9999988875 35543 23445555443 234456899999999987653221111 11234577888898885211
Q ss_pred ----C------CCcEEEEEEeCC-------------------------------------------------CCcccHHH
Q 011400 342 ----S------DELVFVLAATNL-------------------------------------------------PWELDAAM 362 (487)
Q Consensus 342 ----~------~~~VlVIatTn~-------------------------------------------------p~~Ld~aL 362 (487)
. ....+++.|+|- +..+.|.+
T Consensus 177 ~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 256 (364)
T d1um8a_ 177 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 256 (364)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHH
Confidence 0 122334444443 01256788
Q ss_pred HhhccccccCCCCCHHHHHHHHHHh
Q 011400 363 LRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 363 ~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+.|++.++.|...+.++..+|+...
T Consensus 257 ~gRi~~iv~f~~L~~~~l~~Il~~~ 281 (364)
T d1um8a_ 257 IGRLPVLSTLDSISLEAMVDILQKP 281 (364)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSS
T ss_pred HHHhcchhhHhhhhHHHHHHHHHHH
Confidence 8899999999999999999998753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.31 E-value=1e-11 Score=128.12 Aligned_cols=76 Identities=28% Similarity=0.382 Sum_probs=57.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 283 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~ 283 (487)
-|+|++++|+.|.-++..+.++-..-... --.+++|||.||||||||.||+.||+.++.||+.++|..+.. .|+|.
T Consensus 15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~ 93 (443)
T d1g41a_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 93 (443)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeec
Confidence 48999999999998885543222211111 234579999999999999999999999999999999988865 34443
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.21 E-value=6.5e-11 Score=112.84 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=126.9
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW---- 280 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~---- 280 (487)
+.||.+...+++.+.+.... .....|||+|++|||||++|++|+... ..+++.+++..+....
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a----------~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~ 70 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE 70 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred CeEecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence 46777777777777664432 234569999999999999999999876 4578889887653221
Q ss_pred -cCCc-------HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------CcCCCC
Q 011400 281 -RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDE 344 (487)
Q Consensus 281 -~g~s-------e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~ 344 (487)
.|.. ......+|+.+. .++|||||+|.|.... ...|+..++. ......
T Consensus 71 lfg~~~~~~~~~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~-------------Q~~L~~~l~~~~~~~~~~~~~~~~ 134 (247)
T d1ny5a2 71 LFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLEA-------------QAKLLRVIESGKFYRLGGRKEIEV 134 (247)
T ss_dssp HHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHHH-------------HHHHHHHHHHSEECCBTCCSBEEC
T ss_pred hcCcccCCcCCcccccCCHHHccC---CCEEEEeChHhCCHHH-------------HHHHHHHHHhCCEEECCCCCceec
Confidence 0100 000011333333 3799999999985431 2234444431 111112
Q ss_pred cEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011400 345 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 345 ~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t~G~sg~d 413 (487)
.+.+|++|+.+- .+++.|+.|+.. +.+..|...+|.+ |++.++...... ......+++...
T Consensus 135 ~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~ls~~a 206 (247)
T d1ny5a2 135 NVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRK-------YAKEVEGFTKSA 206 (247)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCCCCEECHHH
T ss_pred CeEEEEecCCCHHHHHHcCCCcHHHHhhcCe-eeecCCChhhchhhHhhhhhhhhhhhhhh-------cCCCCCCCCHHH
Confidence 355777777652 367778888754 5566776666653 334443221110 001123578888
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHH
Q 011400 414 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 458 (487)
Q Consensus 414 I~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~ 458 (487)
+..|.+..|.++++++.+.++...... ....|+.+|+-.
T Consensus 207 l~~L~~~~WPGNl~EL~~~l~~a~~~~------~~~~I~~~dl~~ 245 (247)
T d1ny5a2 207 QELLLSYPWYGNVRELKNVIERAVLFS------EGKFIDRGELSC 245 (247)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHC------CSSEECHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhC------CCCeECHHHccc
Confidence 888888888888888877776554432 224588888754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.19 E-value=4e-12 Score=120.97 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=53.1
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
++++|.-+.+.+.+.+.++..... ....|++|||+||||||||++|+++|++++.+++.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~ 71 (273)
T d1gvnb_ 4 VNFTDKQFENRLNDNLEELIQGKK--------AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 71 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCC--------CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred cccChHHHHHHHHHHHHHHHhccc--------CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence 456666666667777766553321 23567899999999999999999999999999999999887654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=4.1e-10 Score=103.63 Aligned_cols=117 Identities=10% Similarity=0.134 Sum_probs=84.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEI 308 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~------~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEi 308 (487)
.+.++||+||||+|||++|..+++... ..++.+....- .-.-..++.+.+.+... ...|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~-----~I~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC-----CCCHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 457899999999999999999999773 24777765321 01234566666655432 2349999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCH
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 377 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ 377 (487)
|.|.. ...+.|+..|+. .+..+++|.+|+.+..+.+++++|+.. +.++.|..
T Consensus 89 d~l~~-------------~aqNaLLK~LEE---Pp~~t~fiLit~~~~~ll~TI~SRC~~-i~~~~p~~ 140 (198)
T d2gnoa2 89 ERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSRVFR-VVVNVPKE 140 (198)
T ss_dssp GGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTSEE-EECCCCHH
T ss_pred cccch-------------hhhhHHHHHHhC---CCCCceeeeccCChhhCHHHHhcceEE-EeCCCchH
Confidence 99853 344568888883 334566778899999999999999954 78877754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.00 E-value=3.1e-09 Score=99.91 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=114.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.|...-++++|.++..++|.+. ..+.++|+||+|+|||+|++.++++.+..+..+++.......
T Consensus 6 ~p~~~~~~f~GR~~el~~l~~~----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~ 69 (283)
T d2fnaa2 6 SPKDNRKDFFDREKEIEKLKGL----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 69 (283)
T ss_dssp SCCCSGGGSCCCHHHHHHHHHT----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCChhhCCChHHHHHHHHhc----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccc
Confidence 4556679999999988888652 235799999999999999999999999988888764432211
Q ss_pred cCCcH----------------------------------------------HHHHHHHHHHH--hcCCcEEEechhhhHH
Q 011400 281 RGDSE----------------------------------------------KLIKVLFELAR--HHAPSTIFLDEIDAII 312 (487)
Q Consensus 281 ~g~se----------------------------------------------~~l~~~f~~a~--~~~p~IL~IDEiD~L~ 312 (487)
..... ..+..+++... ...+.++++||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~ 149 (283)
T d2fnaa2 70 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred cccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhc
Confidence 10000 01122222222 2456789999999886
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc---------cHHHHhhccccccCCCCCHHHHHHH
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL---------DAAMLRRLEKRILVPLPDTEARRAM 383 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L---------d~aL~rRf~~~i~~~~Pd~eeR~~I 383 (487)
...... +...+...++ ... .+..+.+......+ ...+..|+...+.++..+.++..++
T Consensus 150 ~~~~~~---------~~~~l~~~~~---~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~ 216 (283)
T d2fnaa2 150 KLRGVN---------LLPALAYAYD---NLK-RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 216 (283)
T ss_dssp GCTTCC---------CHHHHHHHHH---HCT-TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccchHH---------HHHHHHHHHH---hhh-hhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHH
Confidence 542211 1111222222 112 23333333322111 1122234456688888999999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 384 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 384 L~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
+...+....... .+++.+.+.+.|. +..|..++..+
T Consensus 217 l~~~~~~~~~~~-~~~~~i~~~~~G~-P~~L~~~~~~~ 252 (283)
T d2fnaa2 217 LRRGFQEADIDF-KDYEVVYEKIGGI-PGWLTYFGFIY 252 (283)
T ss_dssp HHHHHHHHTCCC-CCHHHHHHHHCSC-HHHHHHHHHHH
T ss_pred HHhhhhhcCCCH-HHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 988776544433 3477888889987 45676665533
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.41 E-value=7.6e-07 Score=78.22 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.|+|.||||+|||||++.++..++.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~ 27 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 48999999999999999999988543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.01 E-value=1.4e-06 Score=76.00 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=32.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.+.|+|.|||||||||||++||+.++.+++........
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~ 44 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 44 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHh
Confidence 46799999999999999999999999998876654443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=1.7e-06 Score=73.84 Aligned_cols=31 Identities=29% Similarity=0.706 Sum_probs=28.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.|+|.|||||||||+|+.||++++.+++..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~ 33 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 4699999999999999999999999998743
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.94 E-value=3.1e-05 Score=73.66 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=93.1
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCc---EEEEecccchhh
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTT---FFNISASSVVSK 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~---~i~v~~~~l~~~ 279 (487)
.+++|.+..+++|.+.+...-. ...+.|.|+|+.|+|||+||+.++++. +.. .+-++.+...+.
T Consensus 20 ~~~~gR~~~~~~i~~~L~~~~~---------~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~ 90 (277)
T d2a5yb3 20 MTCYIREYHVDRVIKKLDEMCD---------LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK 90 (277)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT---------SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTT
T ss_pred CceeCcHHHHHHHHHHHHhccC---------CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCH
Confidence 4578999999999887743211 123467899999999999999998874 222 122322111000
Q ss_pred ------------------------ccCCcHHHH-HHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 280 ------------------------WRGDSEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 280 ------------------------~~g~se~~l-~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
......... ..+....-....++|+|||++.... +.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~-------------------~~ 151 (277)
T d2a5yb3 91 STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET-------------------IR 151 (277)
T ss_dssp HHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH-------------------HH
T ss_pred HHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhh-------------------hh
Confidence 001111122 2223333344568999999964310 01
Q ss_pred HhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CC-HHHHHHHhcCCcHH
Q 011400 335 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LP-YDLLVERTEGYSGS 412 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~-l~~la~~t~G~sg~ 412 (487)
.+. ..+. .||.||....... .+..+. ..+.+...+.++-.++|..+......... .+ ...+++.+.|.. -
T Consensus 152 ~~~---~~~s--rilvTTR~~~v~~-~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP-L 223 (277)
T d2a5yb3 152 WAQ---ELRL--RCLVTTRDVEISN-AASQTC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP-A 223 (277)
T ss_dssp HHH---HTTC--EEEEEESBGGGGG-GCCSCE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH-H
T ss_pred hhc---ccCc--eEEEEeehHHHHH-hcCCCC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH-H
Confidence 111 1122 2455666443221 222222 34678888999999999876543322211 11 355777787763 4
Q ss_pred HHHH
Q 011400 413 DIRL 416 (487)
Q Consensus 413 dI~~ 416 (487)
.|..
T Consensus 224 Al~~ 227 (277)
T d2a5yb3 224 TLMM 227 (277)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.85 E-value=3.5e-06 Score=73.04 Aligned_cols=30 Identities=43% Similarity=0.758 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|||||||||+|+.||+.++.+++.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 588999999999999999999999998764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.83 E-value=4.2e-06 Score=72.81 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
++-|+|.|||||||||+|++++++++.+++.++...+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 3558899999999999999999999999999986544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.73 E-value=7e-06 Score=71.63 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+|+|.|+||+||||+++.+|+.+|.+|+.+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 588999999999999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.69 E-value=1.4e-05 Score=69.05 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=30.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
+-|+|.||||+||||+|++|+++++.+++.++.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~ 36 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence 468999999999999999999999999888764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.68 E-value=9.9e-06 Score=71.06 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=28.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.|+|.|+||+||||+++.+|+.+|.+|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 4588999999999999999999999998864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.67 E-value=0.00011 Score=67.35 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------------------ccCC
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------------WRGD 283 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------------------~~g~ 283 (487)
.++++..-++|+||||+|||+++..+|... +...+.++..+-... ....
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 100 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence 345666779999999999999999999876 455555654221110 0011
Q ss_pred cHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 284 SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 284 se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
....+..+........|.+++||.++.+...
T Consensus 101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 101 LEDHLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHHHHhcCCceeeeecchhhhcC
Confidence 2344555666667788999999999988653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=1.7e-05 Score=68.67 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++-++|.|||||||||+|+.|++.++.+++..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 3455888999999999999999999998776543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.61 E-value=2.2e-05 Score=68.05 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
.+..|+|.||||+||||+++.||+.++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=1.4e-05 Score=69.44 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
++|+|+||||||||+|+++++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 679999999999999999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=1.5e-05 Score=69.48 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
++|.|+|||||||+++.+|+.++.+|+..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 66779999999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.59 E-value=2.1e-05 Score=67.55 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
+-|+|.|||||||||+|+.|+++++..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 45899999999999999999999987654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.50 E-value=3.7e-05 Score=68.46 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+.|.-|+|.||||+||||+|+.||+.+|...+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~ 36 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 345678999999999999999999999876544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.48 E-value=2.7e-05 Score=69.26 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
|..|+|.|||||||||+|+.||+.+|.+++.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is 33 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 33 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 4569999999999999999999999887653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.46 E-value=4.5e-05 Score=67.70 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
...++|.|||||||||+|+.||+.+|..++.+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~~~i~~ 34 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 34577899999999999999999998765543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.43 E-value=4.7e-05 Score=66.65 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+|+.||+.+|..++.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~ 31 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence 488999999999999999999998876654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.36 E-value=5.3e-05 Score=65.34 Aligned_cols=27 Identities=26% Similarity=0.280 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
+.-|+|+|+||+||||+|++||+.++.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999998853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=4.9e-05 Score=66.89 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++|.|||||||||+|+.||+.+|...+.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~ 31 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 488999999999999999999998876654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.00014 Score=64.08 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+.|.-|++.|+|||||||+|+.++...+..+ ++..++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~--i~~D~~ 48 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 48 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGGTCEE--EEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCCEE--EchHHH
Confidence 4556789999999999999999998877544 444443
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.31 E-value=0.00024 Score=63.15 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
.-|+++|.||+||||+|++||+.+ +.+...++...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~ 40 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 40 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc
Confidence 348899999999999999999977 45555555443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00049 Score=62.64 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------------ccCCcHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 294 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------------~~g~se~~l~~~f~~ 294 (487)
..|.-++|.||+|+||||.+-.+|..+ +..+.-+++...... ...+....+......
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345678899999999999988888766 566666655443211 112234455566666
Q ss_pred HHhcCCcEEEechhhh
Q 011400 295 ARHHAPSTIFLDEIDA 310 (487)
Q Consensus 295 a~~~~p~IL~IDEiD~ 310 (487)
++.....+|+||=.-.
T Consensus 87 a~~~~~d~ilIDTaGr 102 (211)
T d2qy9a2 87 AKARNIDVLIADTAGR 102 (211)
T ss_dssp HHHTTCSEEEECCCCC
T ss_pred HHHcCCCEEEeccCCC
Confidence 6666668999997643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=9.3e-05 Score=65.90 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=26.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.-|+|.||||+||||+|+.||+.+|..++.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~ 39 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence 4578899999999999999999998866553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.28 E-value=8.2e-05 Score=65.53 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+|+.||+.++.+++.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~ 31 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIST 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence 488999999999999999999998876653
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.27 E-value=0.00016 Score=65.23 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
+..+.++|+|||+||||++|.+|++-++..++
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi 82 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 82 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence 45578999999999999999999999875443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=9.8e-05 Score=65.49 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-|+|.||||+||||.|+.||+.+|...+ +..++
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i--~~g~l 35 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGEL 35 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCceE--cHHHH
Confidence 45899999999999999999999986554 44444
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=2.7e-05 Score=68.75 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+.-|+|+|+||+||||+|+.||..++.+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3457789999999999999999998543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.25 E-value=8.8e-05 Score=62.75 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=26.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+-|+|+||||+||||+|+.++.+.. .+..++..++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 3478999999999999999977653 3555554443
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=9.3e-05 Score=65.18 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+|+.||+++|...+..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence 478889999999999999999998775554
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.24 E-value=7.5e-05 Score=66.71 Aligned_cols=34 Identities=18% Similarity=0.468 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.|+|.||||+||||+|+.||+.+|..++ +..++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g~~~i--s~gdll 41 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFELKHL--SSGDLL 41 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBCCEEE--EHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 5888899999999999999999987654 444443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.22 E-value=0.00011 Score=65.56 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
++-|+|.||||+||||+|+.||+.+|.+.+ +..++.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~i--s~g~ll 43 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLL 43 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeeE--eccHHH
Confidence 456899999999999999999999987654 445543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.0001 Score=66.33 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
-|.+.|||||||+|+|+.||+++|.+++ +.+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~i--StGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--CHHHH
Confidence 5778899999999999999999988764 44454
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00013 Score=63.86 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++|.||||+||||+|+.||+.++..++..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~ 31 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceech
Confidence 478999999999999999999998776653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.15 E-value=0.00046 Score=68.89 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccch
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 277 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l~ 277 (487)
+..++++++-.+...+.+++++.. +..-+|+.||+|+||||+..++.+++. .+++.+-- .+..
T Consensus 133 ~~~~l~~LG~~~~~~~~l~~l~~~-------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~ 199 (401)
T d1p9ra_ 133 TRLDLHSLGMTAHNHDNFRRLIKR-------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 199 (401)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHHTS-------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred cchhhhhhcccHHHHHHHHHHHhh-------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccc
Confidence 445688898888888888887733 234488999999999999999999874 44555431 1111
Q ss_pred hh------ccCCcHHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 278 SK------WRGDSEKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 278 ~~------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
-. ..+.........+..+....|+||+|.|+..
T Consensus 200 ~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd 238 (401)
T d1p9ra_ 200 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 238 (401)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred cCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence 00 0111112245566677788999999999953
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00061 Score=64.08 Aligned_cols=77 Identities=25% Similarity=0.317 Sum_probs=52.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~~ 297 (487)
++..+-+.|+||||+|||+++-.++... +...++++...-... .....+..+..+-...+.
T Consensus 51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~ 130 (263)
T d1u94a1 51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 130 (263)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhc
Confidence 4556678999999999999999887765 667777775432211 012234444433344455
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..+.+|+||-+..+.+
T Consensus 131 ~~~~liViDSi~al~~ 146 (263)
T d1u94a1 131 GAVDVIVVDSVAALTP 146 (263)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEECcccccc
Confidence 6778999999988864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.12 E-value=0.0019 Score=58.39 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=43.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------cc----CCcHHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR----GDSEKLIKVLFELAR 296 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~----g~se~~l~~~f~~a~ 296 (487)
++-++|.||+|+||||.+-.+|..+ |..+.-+++...... +. ......+......++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~ 85 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMK 85 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHHH
Confidence 4568899999999999888888866 555555554332211 11 112233333333444
Q ss_pred hcCCcEEEechhhh
Q 011400 297 HHAPSTIFLDEIDA 310 (487)
Q Consensus 297 ~~~p~IL~IDEiD~ 310 (487)
.....+|+||=.-.
T Consensus 86 ~~~~d~ilIDTaGr 99 (207)
T d1okkd2 86 ARGYDLLFVDTAGR 99 (207)
T ss_dssp HHTCSEEEECCCCC
T ss_pred HCCCCEEEcCcccc
Confidence 44557999997643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.12 E-value=0.00014 Score=65.61 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
|.+.||||+||||+|+.||+++|.+++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~is 33 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYLD 33 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 5677999999999999999999987554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.12 E-value=0.00084 Score=60.17 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh--------------------------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK-------------------------------- 279 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~-------------------------------- 279 (487)
++++..-++|+|+||+|||+++..++... +..+++++...-...
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 101 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchhh
Confidence 45677789999999999999997765432 455666654321100
Q ss_pred --cc--CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 280 --WR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 280 --~~--g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
.. ......+..+........|.+++||.++.+...
T Consensus 102 ~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 102 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred hhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHh
Confidence 00 001233445555566778899999999888654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.03 E-value=0.0014 Score=54.37 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.+..+|.+|+|+|||+++-.++.+.+..++.+..
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P 41 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 41 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence 3568999999999999987777777766665544
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.001 Score=59.90 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchhhc--------c----------------
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSKW--------R---------------- 281 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~~~--------~---------------- 281 (487)
.++++.+-++|+||||||||+++-.++... +...++++...-.... .
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 108 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEEC
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEec
Confidence 345667789999999999999999887543 3455666543221100 0
Q ss_pred ---CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 282 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 282 ---g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
..................+.++++|.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~ 144 (251)
T d1szpa2 109 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 144 (251)
T ss_dssp CSTTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGSC
T ss_pred cchhHHHHHHHHHHHHhhccccceeeehhhhhhhhh
Confidence 011222333444455566778889988777643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.94 E-value=0.001 Score=60.47 Aligned_cols=71 Identities=21% Similarity=0.047 Sum_probs=39.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------------ccCCcHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 294 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------------~~g~se~~l~~~f~~ 294 (487)
..|.-++|.||+|+||||.+-.+|..+ +..+..+++...... ...+....+......
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345668899999999999888888766 455555554332211 011223333444444
Q ss_pred HHhcCCcEEEechh
Q 011400 295 ARHHAPSTIFLDEI 308 (487)
Q Consensus 295 a~~~~p~IL~IDEi 308 (487)
++.....+|+||=.
T Consensus 90 ~~~~~~d~IlIDTa 103 (211)
T d1j8yf2 90 FLSEKMEIIIVDTA 103 (211)
T ss_dssp HHHTTCSEEEEECC
T ss_pred hhccCCceEEEecC
Confidence 45555679999855
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.0017 Score=59.07 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+|.-++|.||+|+||||.+-.+|..+ +..+.-+++.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~D 48 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeec
Confidence 355678999999999999888888766 5555555443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.86 E-value=0.00026 Score=58.33 Aligned_cols=21 Identities=33% Similarity=0.197 Sum_probs=17.4
Q ss_pred CCCCeeEEEEcCCCChHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LA 257 (487)
+.....++|.+|||+|||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 345678999999999999665
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00043 Score=59.05 Aligned_cols=31 Identities=26% Similarity=0.099 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
-+.|+|+||||||||++.+++++ |..+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~ 37 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence 47899999999999999999986 55554443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.84 E-value=0.0022 Score=60.29 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-c---------------cCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-W---------------RGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~-~---------------~g~se~~l~~~f~~a~~ 297 (487)
++..+-+.|+||+|||||++|-.++... |..+++++...-.+. + ....+..+..+-...+.
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 133 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhc
Confidence 4455668999999999999999987765 677888876532211 0 11234444333333344
Q ss_pred cCCcEEEechhhhHHhh
Q 011400 298 HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~~ 314 (487)
..+.+|+||=+..+.+.
T Consensus 134 ~~~~liIiDSi~al~~r 150 (268)
T d1xp8a1 134 GAIDVVVVDSVAALTPR 150 (268)
T ss_dssp TCCSEEEEECTTTCCCS
T ss_pred CCCcEEEEecccccccH
Confidence 56789999999998853
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0033 Score=56.80 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++++..-++|+||||+|||++|..+|...
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346777789999999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.76 E-value=0.00063 Score=65.90 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=46.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEE-ecccchhh-------ccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNI-SASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v-~~~~l~~~-------~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
.+++|+.||+|+||||+.++++.... ..++.+ +..++.-. ..+...-....++..+..+.|..|++.|+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 35799999999999999999999873 344444 22222110 11111223455677778889999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.76 E-value=0.0024 Score=57.70 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
++-++|.||+|+||||.+-.+|..+ +..+..+++..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt 48 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 48 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 3447889999999999988888866 56666665543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.69 E-value=0.0018 Score=60.99 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=51.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
+++..+-+.|+||||+|||++|-.++... +...++++...-.+. .....+..+..+-...+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 35666778999999999999987776644 677788876542211 11223333333323334
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...+++|+||-+..+.+.
T Consensus 136 ~~~~~liIiDSi~al~~~ 153 (269)
T d1mo6a1 136 SGALDIVVIDSVAALVPR 153 (269)
T ss_dssp TTCEEEEEEECSTTCCCH
T ss_pred cCCCCEEEEecccccccH
Confidence 566789999999988853
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0041 Score=60.80 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+..+..+...+.. +-++|+||||||||+++..+..
T Consensus 150 ~~~Q~~A~~~al~~---------------~~~vI~G~pGTGKTt~i~~~l~ 185 (359)
T d1w36d1 150 INWQKVAAAVALTR---------------RISVISGGPGTGKTTTVAKLLA 185 (359)
T ss_dssp CCHHHHHHHHHHTB---------------SEEEEECCTTSTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcC---------------CeEEEEcCCCCCceehHHHHHH
Confidence 34566666655522 3589999999999998865543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.67 E-value=0.00048 Score=59.36 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+-|+|.|+||+||||+++.|+..++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999874
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.55 E-value=0.0014 Score=61.59 Aligned_cols=30 Identities=40% Similarity=0.528 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+..+.++|+|||+||||+++.+|++-+|..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~ 131 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence 445679999999999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.54 E-value=0.0021 Score=57.91 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 278 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~ 278 (487)
.+.-|+|+|.||+||||+|++|+..+ +.+++.+++..+..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 45568999999999999999999765 67888888766543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.48 E-value=0.00086 Score=58.02 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
-++|.|+||+||||+++.+++.++.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999998843
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.46 E-value=0.01 Score=54.77 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|..+ +.++..++.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 3455668999999999999998887543 667777764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.33 E-value=0.0013 Score=58.31 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.|+|.||+|+|||+|++.++++.+..+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~ 29 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG 29 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence 3899999999999999999999875554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0093 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.++|+||..+|||++.|.++-..
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHHHHHH
Confidence 3678999999999999999998743
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0014 Score=57.79 Aligned_cols=28 Identities=39% Similarity=0.691 Sum_probs=24.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+.|+|.||+|+|||+|++.++++....+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 3499999999999999999999876544
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0054 Score=56.58 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||||++.++..+
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4566779999999999999999999865
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.25 E-value=0.0025 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
|-|.||+|+||||+|+.|+..++
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 55899999999999999998774
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0013 Score=57.55 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++++..-++|+||||+|||+++..+|...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345677789999999999999999998765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.03 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
|..-.+|+|+||+|||+++-.+|..+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999988764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.0042 Score=53.15 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=23.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
+-+.|++|+|||||+..++.++ |..+..+
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi 35 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5699999999999999999987 4555544
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0062 Score=56.48 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|....
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4666779999999999999999998755
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.83 E-value=0.0022 Score=58.13 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++++..-++|+||||+|||+++-.+|...
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345667789999999999999999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.72 E-value=0.0098 Score=55.24 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.++...
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 4666779999999999999999998755
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.0038 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+-++|.||+|+||||+++.+.++..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.56 E-value=0.02 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|+||+|||+|++.+...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.04 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
++|+|.|+||+|||+|..++...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999873
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.39 E-value=0.028 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.++|+||...|||++.|.++-..
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHHH
Confidence 358999999999999999997743
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0052 Score=54.73 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
-|-|.||+|+||||+|+.|+..++..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 36689999999999999999998643
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.32 E-value=0.019 Score=51.04 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
..++.+|+|+|||.++-.++.+++.+.+.+..
T Consensus 87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 45678999999999999999999877665544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.29 E-value=0.0048 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+++..-++|+|+||+|||+++..+|...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566779999999999999999999765
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.28 E-value=0.0052 Score=55.85 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.+.+++.+|+|+|||+++-..+-.. +...+.+.
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~ 93 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF 93 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence 3679999999999998765554433 44454443
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.28 E-value=0.0069 Score=52.20 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
++.-|+|.|+=|+|||+++|++++.+|..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 44458899999999999999999999754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.032 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.|+|.|+||+|||+|..++.++-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998753
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.93 E-value=0.066 Score=49.65 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+..-||+|..|+|||.++-..+... |.....+-..
T Consensus 103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt 141 (264)
T d1gm5a3 103 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 141 (264)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CcceeeeeccccccccHHHHHHHHHHHhcccceeEEeeh
Confidence 34568999999999999887666533 6666655443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.01 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.|+|.||+|+|||+|++.+.++..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999998763
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.81 E-value=0.046 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|++|+|||+|+..+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.78 E-value=0.012 Score=51.62 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..++|||.|++|+|||++|-.+... |..++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 4579999999999999999988875 655543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.76 E-value=0.013 Score=51.02 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
--|-|+|++|+||||+|+.+ .+.|.+++.
T Consensus 4 ~IIgitG~~gSGKstva~~l-~~~g~~~~~ 32 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL-RSWGYPVLD 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence 34668999999999999998 567877664
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.057 Score=51.68 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=42.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CC--cEEEEecccchh----------------------------hccCCcHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KT--TFFNISASSVVS----------------------------KWRGDSEK 286 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~--~~i~v~~~~l~~----------------------------~~~g~se~ 286 (487)
...|-|+||||+|||||+.+++..+ |. -++.++.+.-.+ ...|....
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~ 133 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 133 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchh
Confidence 4458899999999999999998866 32 344444332111 01233344
Q ss_pred HHHHHHHHHHhcCCcEEEechh
Q 011400 287 LIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 287 ~l~~~f~~a~~~~p~IL~IDEi 308 (487)
..............++++|+-+
T Consensus 134 ~~~~~~~~~~~~g~d~iliEtv 155 (327)
T d2p67a1 134 RARELMLLCEAAGYDVVIVETV 155 (327)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEE
T ss_pred hhhHHHHHHHhcCCCeEEEeec
Confidence 5555566666666788888876
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.74 E-value=0.037 Score=48.56 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.2
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+++++.+|+|+|||+++-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 3579999999999998763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.031 Score=52.63 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=26.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el------~~~~i~v~~~~l 276 (487)
|--|-|.|++||||||++..|...+ ...+..++..++
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 4445689999999999999887765 344555565444
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.63 E-value=0.013 Score=52.40 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh--CCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el--~~~~i~v~ 272 (487)
+++.||+|+|||||.+++.+.+ +.....++
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 7899999999999999998766 34455554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.019 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.42 E-value=0.063 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..-.|+|.|.||+|||++..+|..+
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.36 E-value=0.045 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|.||+|||+|+..+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.33 E-value=0.03 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|.|.|.||+|||+|++++.+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.20 E-value=0.018 Score=49.95 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
...+|||.|++|+|||++|-.+... |..+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~l 42 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR-GHRL 42 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence 4579999999999999999887776 5444
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.18 E-value=0.015 Score=50.84 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
...+|||.||+|+|||++|-.+... |..++
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lv 43 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK-NHLFV 43 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence 4579999999999999999888764 55554
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.15 E-value=0.019 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|+||+|||+|++.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.046 Score=51.90 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=30.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~~~l 276 (487)
..|--|-|.|++|+||||+|+.|+..+. ..+..++..++
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 4455677999999999999999999873 44556665554
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.92 E-value=0.099 Score=49.80 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~--~~~i~v~~~ 274 (487)
.-|=|.||||+|||||..+++..+ + .-++.++.+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDps 90 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 90 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence 457799999999999999999865 3 334555543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.91 E-value=0.013 Score=51.14 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.|.-|.|.|+.|+||||+++.|++.++...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3456889999999999999999999876444
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.024 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+-++|.||+|+|||+|.+.+.....
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999999864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.80 E-value=0.056 Score=45.76 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
.-|++.|+||+|||+|++.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998855
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.017 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
++|.|+||+|||+|+..+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.67 E-value=0.031 Score=48.90 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
|.|.|+.|+||||+++.|++.+ |.+++.+..
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~ 36 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence 6788999999999999999976 666766543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.035 Score=49.44 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
|.|.|+.|+||||+++.+++.+ |.+++.+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 5667999999999999999977 66666654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.52 E-value=0.025 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|+|.|+||+|||+|.+++...
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999774
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.053 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|+||+|||+|+..+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999988763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.35 E-value=0.02 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
|-|+|++||||||+|+.+. +.|.+++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 5589999999999999885 67887765
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=93.32 E-value=0.016 Score=53.74 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.9
Q ss_pred CCCCCeeEEEEcCCCChHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTM 255 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~ 255 (487)
.+...+.+|+.+|+|+|||+
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTT
T ss_pred HhhcCCcEEEEECCCCCHHH
Confidence 34567889999999999995
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.31 E-value=0.022 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=17.2
Q ss_pred eeEEEEcCCCChHHHH-HHHHHHH
Q 011400 241 KGILLFGPPGTGKTML-AKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~L-AraiA~e 263 (487)
..+++.|+||||||+. +..++..
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~l 48 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAYL 48 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHH
Confidence 4599999999999974 4445443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.11 E-value=0.023 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.5
Q ss_pred eeEEEEcCCCChHHHH-HHHHHH
Q 011400 241 KGILLFGPPGTGKTML-AKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~L-AraiA~ 262 (487)
..+|+.|+||||||++ +..++.
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHHHHH
Confidence 4589999999999975 444444
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.032 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
|-|+|++|+||||+++.+. +.|.+++.
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~vid 32 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINVID 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence 5689999999999999875 67876554
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.039 Score=49.51 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
|+-|.|-|+-|+||||+++.|++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 566899999999999999999999865544
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.00 E-value=0.027 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
..-|+|.|+||+|||+|..++..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999999855
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.026 Score=48.25 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|++.|+||||||+|++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999998764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.027 Score=51.36 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+-|.||+|+|||||.+.++.-.
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3555678999999999999999998855
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.89 E-value=0.024 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|+||+|||+|.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998763
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.82 E-value=0.024 Score=51.65 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+....-+-|.||+|||||||.+.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCcchhhHhccCCC
Confidence 3555678999999999999999998854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.77 E-value=0.019 Score=51.10 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++..+
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 455668899999999999999998865
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.28 Score=42.54 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=21.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+++++.-|+|+|||.++....-......+.+
T Consensus 41 ~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v 71 (206)
T d1oywa2 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVV 71 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCEEEEcCCCCCCcchhhhhhhhccCceEEe
Confidence 5799999999999988755544444443333
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=92.73 E-value=0.024 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||||++.++.-.
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 4666779999999999999999998855
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.66 E-value=0.031 Score=47.21 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|+|.|+||+|||+|+..+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998886
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=0.037 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-|.|.|+.|+||||+++.+++.+
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999877
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=92.52 E-value=0.028 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.++.-.
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4667779999999999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.035 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|+|.|++|+|||+|++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999999873
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.034 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|++|+|||+|++.+...
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999999874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.33 E-value=0.03 Score=51.29 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+-|.||+|+||||+++.++.-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455568899999999999999999855
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.034 Score=52.18 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4667779999999999999999999866
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.31 E-value=0.036 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|++.|++|+|||+|++.+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 899999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.27 E-value=0.037 Score=50.68 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+-|.||+|+|||||.+.++.-.
T Consensus 29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3555678999999999999999999865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.27 E-value=0.034 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|.|.|+||+|||+|++++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999975
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.25 E-value=0.032 Score=50.21 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
|-|+|+.||||||+|+.++...|. ..++++
T Consensus 4 IgiTG~igSGKsTva~~l~e~~g~--~~i~~a 33 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNYSA--VKYQLA 33 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCE--EECCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC--eEEccc
Confidence 679999999999999999998774 444433
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.035 Score=47.15 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|++|+|||+|++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999987
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.03 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....-+-|.||+|+|||||++.|+.-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 455668899999999999999998855
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=92.19 E-value=0.032 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+||||+.+.++.-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455568999999999999999999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.15 E-value=0.034 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-+.|.||.|+|||||.+.|+.-+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 35588999999999999999966
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.041 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|++.|++|+|||+|++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999876
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.038 Score=47.58 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|++|+|||+|++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 89999999999999999875
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.00 E-value=0.029 Score=51.49 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+-|.||+|+||||+++.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 3555679999999999999999999854
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.042 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|++|+|||+|++.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=0.081 Score=47.06 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=27.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
+=|.|.|+-|+||||+++.+++.+......+..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~ 36 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF 36 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence 347789999999999999999999776665543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.043 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|+|.|.+|+|||+|++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.045 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|.+|+|||+|++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999999863
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.045 Score=46.42 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|++|+|||+|++.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999999876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.045 Score=46.22 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|.+|+|||+|++.+..
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.044 Score=46.17 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|++.|+||+|||+|++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.69 E-value=0.043 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|+||+|||+|..+|.++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999763
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.046 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|++|+|||+|+..+...
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.61 E-value=0.048 Score=45.77 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|++|+|||+|++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999986
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.55 E-value=0.048 Score=46.85 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|.+|||||+|++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999986
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.049 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-|+|.|++|+|||+|++.+...
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999998763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.043 Score=46.48 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|.+|+|||+|++.+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999998876
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.40 E-value=0.063 Score=48.60 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=22.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+..+|.|++|+|||+|..++..+.....
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T 123 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRV 123 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhc
Confidence 4678999999999999999976654443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.068 Score=52.23 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=27.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.+|+++.|++|+|||++++.+..++ +.+++.++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4789999999999999988776654 667777664
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.054 Score=45.46 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|.+|+|||+|++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999986
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.053 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|.+|+|||+|++.+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4999999999999999998763
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.21 E-value=0.047 Score=50.51 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+-|.||+|+|||||+++|+.-.
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 455668899999999999999998754
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.56 Score=42.20 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
|+.-..+..+.+.+.+.+.. ..+...||+|.+|+|||.++-..+... |..++.+-+.
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~------------~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt 113 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQ------------PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 113 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHS------------SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cccchhHHHHHHHHHHHHhc------------cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccH
Confidence 33334455555566655544 234678999999999999887666544 6666666543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.056 Score=45.92 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|.+|+|||+|++.+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999876
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.06 Score=45.54 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|++.|++|+|||+|++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999877
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.06 Score=45.95 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|++.|++|+|||+|++.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999999886
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.95 E-value=0.051 Score=51.05 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
-|-+.|++|+||||+++++.+.+ +.....++..++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 47799999999999999998876 556566665554
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.059 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|++|+|||+|+..+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998874
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.12 Score=47.28 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
..|+-+++.|.=|+||||++-++|..+ |.++.-+++.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456788999999999999999998877 7777777754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.88 E-value=0.063 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|+|.|.+|+|||+|++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.035 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
+-|.|-|+.|+||||+++.|++.+..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45889999999999999999998854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.80 E-value=0.065 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|.+|+|||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.054 Score=45.90 Aligned_cols=21 Identities=43% Similarity=0.805 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|+|.|++|+|||+|++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 789999999999999998653
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=90.76 E-value=0.19 Score=41.70 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.4
Q ss_pred EEEEcCCCChHHH-HHHHHHH--HhCCcEEEEecc
Q 011400 243 ILLFGPPGTGKTM-LAKAVAT--ECKTTFFNISAS 274 (487)
Q Consensus 243 vLL~GppGtGKT~-LAraiA~--el~~~~i~v~~~ 274 (487)
=+++||-.+|||+ |.+.+-+ ..+.+++.++..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~ 39 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 39 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 3689999999999 7776633 447777766643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=90.66 E-value=0.051 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|.|.|+||+|||||.+++.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 599999999999999999974
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.61 E-value=0.069 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
-|++.|.+|+|||+|++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.074 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|++|+|||+|++.+...
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999998763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.33 E-value=0.07 Score=46.34 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|++.|++|+|||+|++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999998863
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.21 E-value=0.044 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|.|.|.||+|||+|+.++..+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999875
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.23 Score=44.24 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-.+|.|.-|+|||||.+.+.++.
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.06 E-value=0.05 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.--|+|.|+||+|||+|++.+..
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999998754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.06 E-value=0.081 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|.+|+|||+|++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998774
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.077 Score=45.11 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|++|+|||+|++.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.02 E-value=0.082 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|++.|++|+|||+|++.+...
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999999873
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.084 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|+|.|.+|+|||+|++.+.+.
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988873
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.089 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|.+|+|||+|++.+.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3899999999999999998773
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.51 E-value=0.053 Score=46.14 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|+|.|.+|||||+|++.+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.05 Score=46.26 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
|++.|++|+|||+|+..+...
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999988663
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=89.17 E-value=0.076 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+-|.||.|+|||||.+.++...
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999999866
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.093 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|.|.|.||+|||+|..++.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999975
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.099 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|++|+|||+|+..+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999888764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.087 Score=44.45 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
...|.|.|+|++|||+|.+++..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999844
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=88.86 E-value=0.096 Score=47.68 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+-|.||.|+|||||.+.++..+
T Consensus 26 ~~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 26 EEGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 555667899999999999999999876
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.22 Score=43.09 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.4
Q ss_pred eeEEEEcC-CCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGP-PGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~Gp-pGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.++++|- +|+|||+++-.+|..+ |..+..++.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 46899998 5999999999998876 777777764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=88.48 E-value=0.14 Score=43.59 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-.|.|.|.+|+|||+|+.++.+.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.39 E-value=0.088 Score=44.99 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|-|.|+||+|||+|..++.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.22 E-value=0.091 Score=44.75 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
|.|.|.||+|||+|+.++.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999965
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=0.038 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
.+|+||.|+|||++..||.-.++
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57889999999999999988763
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.10 E-value=0.098 Score=48.08 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+-|.||.|+|||||++.++...
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 455568899999999999999998865
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.55 E-value=0.13 Score=44.01 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=17.8
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAV 260 (487)
Q Consensus 242 gvLL~GppGtGKT~LArai 260 (487)
-|+|.|.+|+|||+|++.+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3899999999999999999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=0.1 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+..-+-|.||.|+|||||.+.++.-
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45556889999999999999999873
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.59 E-value=0.31 Score=41.85 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=22.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH----hCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE----CKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e----l~~~~i~v~ 272 (487)
+++|+.+|+|+|||.++-.++.. .+..++.+.
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~ 59 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence 35889999999999866655542 244555554
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.34 E-value=0.068 Score=48.53 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.+..+|.|++|+|||+|+.++..+....
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~ 124 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLR 124 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhh
Confidence 3456788999999999999997655443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.39 E-value=0.24 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+..+...
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988774
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.74 Score=41.51 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=27.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
+-+++.|.=|+||||++-.+|..+ |..+..+++.
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 446778999999999887777765 7788887764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=85.17 E-value=0.54 Score=39.81 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
+|-+.|.|++|||||..++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 588999999999999999975
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.11 E-value=0.21 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-|||.|++|+|||+|++.+...
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.69 E-value=0.25 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-|++.|..|+|||+|++.+...-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999997653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.3 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....++|.|++|||||+|+..+++..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999855
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.37 E-value=0.21 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
-|.|-|+-|+||||+++.+++.++
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 478899999999999999999884
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.54 E-value=0.33 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
-+|+||.|+|||++..||+-.+|
T Consensus 28 ~~i~G~NGsGKS~ileAi~~~lg 50 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISFVLG 50 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999976654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.64 E-value=0.22 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
--+|+||.|+|||++..||+-.+
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 35899999999999999997654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.20 E-value=0.29 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~ 266 (487)
|.|-|+-|+||||+++.+++.++.
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 778899999999999999998853
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=81.08 E-value=2.7 Score=35.90 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+|+.|+..+|||..|..++...+ +.+++-.+.
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~-~~~YiAT~~ 33 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAP-QVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCS-SEEEEECCC
T ss_pred EEEECCCCccHHHHHHHHHhcCC-CcEEEEccC
Confidence 68999999999999999986544 455554443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.05 E-value=0.39 Score=40.45 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
-|+|.|..|+|||+|++.+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999988653
|