Citrus Sinensis ID: 011401

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
MAPSLSIYHLVILLSALASVSLSEFVLPLTHSLSKTQFTSTHHLLKSTTTRSAARFRHRHRQQQVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNKN
cccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccccEEEEEEEccccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEEEEccccccEEEccEEEEccccccccccEEEccccccccHHHHHHHcccccccEEEEEccccccccccccccccEEEccccccccccccccccEEEccccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccccEEEEccccccccccccEEEEEEEEccccccccccccEEEEcEEEEEcEEEEEccccEEEEEccccccHHHHcccc
cHHHHHHHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHHcccHHHHccHcccccccccccccccEEEEEEEEcccccccEEEEEEccccEEEEEccccccHHHccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEcccccccEEcccEEEEEcccccccccEEEEcccccccHHHHHHHHcccccccEEEEEEcccccccccccccEEEEccccccccccccccccEEEcccccccccccEEEEEEEEEEEccEEEcccHHHcccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccEccEEEEEEEccccEEEcccHHEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEcccEEEEEEccccEEcEccccHHHHHHHHccc
MAPSLSIYHLVILLSALASvslsefvlplthslsktqftsthhllkstTTRSAARFRHRHRqqqvslplspgsdytlsfslggsasspvslyldtgsdlvwlpchpfecilcenkqekpapplnisstatkvsckspacsaahsslptsdlcaiakcpldsietsdcksfscppfyyaygdgsLVARLYKdslsmpvssqkslvlhnftfgcahttlgepigvagfgrgllsFPAQLaslsphlgnrfsyclvshsfdsnrtrlpsplilgryedkekrvnseeAEFVYtdmldnpkhpyfysvglegisvgkrnipapgflrrvdgqgyggmvvdsgttftmlpaSLYEKVVAEFDRRLGRVHERASqieektglspcyyfdqvvkgnvptvelhfvgsnssvalprknyfydfldagdgkakkrNVGCLmlmnggdeeelsggpgatlgnyqqQGFEVVYDLEKGKVGFARRQCASLWESLNKN
MAPSLSIYHLVILLSALASVSLSEFVLPLTHSlsktqftsthhllksTTTRSAARFRHRHrqqqvslplspgSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVShsfdsnrtrlpsplilgryedkekrvnSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHErasqieektglspcyYFDQVVKGNVPTVELHFVgsnssvalprKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNKN
MAPSLSIYHlvillsalasvslsEFVLPLTHSLSKTQFtsthhllkstttrsaarfrhrhrqqqVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNKN
****LSIYHLVILLSALASVSLSEFVLPLTHSLSKTQFTST**********************************************PVSLYLDTGSDLVWLPCHPFECILCE***********************************SDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRY***********AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMN************ATLGNYQQQGFEVVYDLEKGKVGFARRQCASLW******
**PSLSIYHLVILLSALASVSLSEFVL******************************************SPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI**********************SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHS*******L*SPLILGRYEDKEKR**SEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGR********EEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL*E*****
MAPSLSIYHLVILLSALASVSLSEFVLPLTHSLSKTQFT*****************************LSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISST******************PTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNKN
MAPSLSIYHLVILLSALASVSLSEFVLPLTHSLS******************************VSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSN*TRLPSPLILGRYEDKE*****EEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLN**
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAPSLSIYHLVILLSALASVSLSEFVLPLTHSLSKTQFTSTHHLLKSTTTRSAARFRHRHRQQQVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query486 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.693 0.771 0.287 1e-29
Q766C2438 Aspartic proteinase nepen N/A no 0.748 0.831 0.275 1e-28
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.701 0.682 0.292 7e-28
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.685 0.708 0.303 1e-22
Q6XBF8437 Aspartic proteinase CDR1 no no 0.757 0.842 0.258 3e-19
Q3EBM5447 Probable aspartic proteas no no 0.792 0.861 0.272 2e-18
Q9LZL3453 Aspartic proteinase PCS1 no no 0.662 0.710 0.257 1e-17
Q9LX20528 Aspartic proteinase-like no no 0.681 0.626 0.268 1e-12
Q9S9K4475 Aspartic proteinase-like no no 0.786 0.804 0.243 3e-11
Q8RVH5433 Basic 7S globulin 2 OS=Gl no no 0.629 0.706 0.237 1e-09
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 170/411 (41%), Gaps = 74/411 (18%)

Query: 74  DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVS 133
           +Y ++ S+G + + P S  +DTGSDL+W  C P  C  C N+      P   SS +T + 
Sbjct: 94  EYLMNLSIG-TPAQPFSAIMDTGSDLIWTQCQP--CTQCFNQSTPIFNPQGSSSFST-LP 149

Query: 134 CKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSL 193
           C S  C A  S   +++ C                      + Y YGDGS      + S+
Sbjct: 150 CSSQLCQALSSPTCSNNFCQ---------------------YTYGYGDGSET----QGSM 184

Query: 194 SMPVSSQKSLVLHNFTFGCAHTT----LGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFS 249
                +  S+ + N TFGC         G   G+ G GRG LS P+QL         +FS
Sbjct: 185 GTETLTFGSVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDV------TKFS 238

Query: 250 YCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGI 309
           YC+         +  PS L+LG         NS  A    T ++ + + P FY + L G+
Sbjct: 239 YCMTPIG-----SSTPSNLLLGSL------ANSVTAGSPNTTLIQSSQIPTFYYITLNGL 287

Query: 310 SVGKRNIPA-PGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERAS 368
           SVG   +P  P         G GG+++DSGTT T    + Y+ V  EF  ++       S
Sbjct: 288 SVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGS 347

Query: 369 QIEEKTGLSPCYYFDQVVKG-NVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRN 427
                +G   C+          +PT  +HF G +  + LP +NYF              +
Sbjct: 348 ----SSGFDLCFQTPSDPSNLQIPTFVMHFDGGD--LELPSENYFI-----------SPS 390

Query: 428 VGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478
            G + L  G   + +S       GN QQQ   VVYD     V FA  QC +
Sbjct: 391 NGLICLAMGSSSQGMS-----IFGNIQQQNMLVVYDTGNSVVSFASAQCGA 436
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q8RVH5|7SBG2_SOYBN Basic 7S globulin 2 OS=Glycine max PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
255576064493 pepsin A, putative [Ricinus communis] gi 0.991 0.977 0.721 0.0
359474399485 PREDICTED: aspartic proteinase nepenthes 0.981 0.983 0.703 0.0
224101053496 predicted protein [Populus trichocarpa] 0.991 0.971 0.706 0.0
224138580496 predicted protein [Populus trichocarpa] 0.991 0.971 0.704 0.0
224074147496 predicted protein [Populus trichocarpa] 0.991 0.971 0.706 0.0
356563324480 PREDICTED: aspartic proteinase nepenthes 0.973 0.985 0.678 0.0
356513737455 PREDICTED: aspartic proteinase nepenthes 0.921 0.984 0.703 0.0
357476865482 Aspartic proteinase nepenthesin-2 [Medic 0.932 0.939 0.663 1e-177
357482031481 Aspartic proteinase nepenthesin-2 [Medic 0.967 0.977 0.661 1e-177
449458942480 PREDICTED: aspartic proteinase nepenthes 0.903 0.914 0.670 1e-172
>gi|255576064|ref|XP_002528927.1| pepsin A, putative [Ricinus communis] gi|223531629|gb|EEF33456.1| pepsin A, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/495 (72%), Positives = 411/495 (83%), Gaps = 13/495 (2%)

Query: 1   MAPSLSIYHLVILLSALASVSLSEFV-LPLTHSLSKTQFTSTHHLLKSTTTRSAARFRHR 59
           MA S   +   IL  +  SVS+SE + LPLTHSLS TQFTSTHHLLKST++RSA+RF+H+
Sbjct: 1   MATSCYAFLCFILCFSCISVSISEILYLPLTHSLSNTQFTSTHHLLKSTSSRSASRFQHQ 60

Query: 60  HRQQ------QVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCE 113
           H+++      QVSLPLSPGSDYTLSF+L  +    VSLYLDTGSDLVW PC PFECILCE
Sbjct: 61  HQKRHLRNRHQVSLPLSPGSDYTLSFTLNSNPPQHVSLYLDTGSDLVWFPCKPFECILCE 120

Query: 114 NKQEKPA---PPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSF 170
            K E      PP  +SSTA  V CKS ACSAAHS+LPTSDLCAIA CPL+SIETSDC SF
Sbjct: 121 GKAENTTASTPPPRLSSTARSVHCKSSACSAAHSNLPTSDLCAIADCPLESIETSDCHSF 180

Query: 171 SCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGL 230
           SCP FYYAYGDGSLVARLY DS+ +P+++  SL LHNFTFGCAHT L EP+GVAGFGRG+
Sbjct: 181 SCPSFYYAYGDGSLVARLYHDSIKLPLAT-PSLSLHNFTFGCAHTALAEPVGVAGFGRGV 239

Query: 231 LSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYT 290
           LS PAQLAS +P LGNRFSYCLVSHSF+S+R RLPSPLILG  +DKEKRVN ++ +FVYT
Sbjct: 240 LSLPAQLASFAPQLGNRFSYCLVSHSFNSDRLRLPSPLILGHSDDKEKRVNKDDVQFVYT 299

Query: 291 DMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYE 350
            MLDNPKHPYFY VGLEGIS+GK+ IPAP FL+RVD +G GG+VVDSGTTFTMLPASLY 
Sbjct: 300 SMLDNPKHPYFYCVGLEGISIGKKKIPAPEFLKRVDREGSGGVVVDSGTTFTMLPASLYN 359

Query: 351 KVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKN 410
            VVAEFD R+GRV+ERA ++E+KTGL PCYY+D VV  N+P++ LHFVG+ SSV LP+KN
Sbjct: 360 SVVAEFDNRVGRVYERAKEVEDKTGLGPCYYYDTVV--NIPSLVLHFVGNESSVVLPKKN 417

Query: 411 YFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVG 470
           YFYDFLD GDG  +KR VGCLMLMNGG+E EL+GGPGATLGNYQQ GFEVVYDLE+ +VG
Sbjct: 418 YFYDFLDGGDGVRRKRRVGCLMLMNGGEEAELTGGPGATLGNYQQHGFEVVYDLEQRRVG 477

Query: 471 FARRQCASLWESLNK 485
           FARR+CASLWESLN+
Sbjct: 478 FARRKCASLWESLNQ 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474399|ref|XP_003631454.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101053|ref|XP_002334311.1| predicted protein [Populus trichocarpa] gi|222871031|gb|EEF08162.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138580|ref|XP_002326638.1| predicted protein [Populus trichocarpa] gi|222833960|gb|EEE72437.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224074147|ref|XP_002304273.1| predicted protein [Populus trichocarpa] gi|222841705|gb|EEE79252.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563324|ref|XP_003549914.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356513737|ref|XP_003525567.1| PREDICTED: aspartic proteinase nepenthesin-1-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|357476865|ref|XP_003608718.1| Aspartic proteinase nepenthesin-2 [Medicago truncatula] gi|355509773|gb|AES90915.1| Aspartic proteinase nepenthesin-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357482031|ref|XP_003611301.1| Aspartic proteinase nepenthesin-2 [Medicago truncatula] gi|355512636|gb|AES94259.1| Aspartic proteinase nepenthesin-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449458942|ref|XP_004147205.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Cucumis sativus] gi|449505000|ref|XP_004162350.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
TAIR|locus:505006483499 AT4G16563 [Arabidopsis thalian 0.845 0.823 0.691 5.1e-161
TAIR|locus:2153197491 AT5G45120 [Arabidopsis thalian 0.788 0.780 0.365 6.4e-60
TAIR|locus:2079919469 AT3G52500 [Arabidopsis thalian 0.666 0.690 0.313 6.5e-35
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.514 0.517 0.307 2.5e-31
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.434 0.435 0.338 4.2e-31
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.487 0.514 0.298 5.8e-27
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.430 0.444 0.317 2.6e-23
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.485 0.540 0.272 8.6e-22
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.526 0.478 0.289 1.2e-20
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.565 0.608 0.303 1.5e-20
TAIR|locus:505006483 AT4G16563 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
 Identities = 300/434 (69%), Positives = 347/434 (79%)

Query:    65 VSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLN 124
             +SLP+S GSDY +S S+G S+SS VSLYLDTGSDLVW PC PF CILCE+K   P+PP +
Sbjct:    73 LSLPISSGSDYLISLSVG-SSSSAVSLYLDTGSDLVWFPCRPFTCILCESKPLPPSPPSS 131

Query:   125 ISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCK--SFSCPPFYYAYGDG 182
             +SS+AT VSC SP+CSAAHSSLP+SDLCAI+ CPLD IET DC   S+ CPPFYYAYGDG
Sbjct:   132 LSSSATTVSCSSPSCSAAHSSLPSSDLCAISNCPLDFIETGDCNTSSYPCPPFYYAYGDG 191

Query:   183 SLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSP 242
             SLVA+LY DSLS+P     S+ + NFTFGCAHTTL EPIGVAGFGRG LS PAQLA  SP
Sbjct:   192 SLVAKLYSDSLSLP-----SVSVSNFTFGCAHTTLAEPIGVAGFGRGRLSLPAQLAVHSP 246

Query:   243 HLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDK-EKRVNS------------EEAEFVY 289
             HLGN FSYCLVSHSFDS+R R PSPLILGR+ DK EKRV +            ++ EFV+
Sbjct:   247 HLGNSFSYCLVSHSFDSDRVRRPSPLILGRFVDKKEKRVGTTDDHDDGDDEKKKKNEFVF 306

Query:   290 TDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLY 349
             T+ML+NPKHPYFYSV L+GIS+GKRNIPAP  LRR+D  G GG+VVDSGTTFTMLPA  Y
Sbjct:   307 TEMLENPKHPYFYSVSLQGISIGKRNIPAPAMLRRIDKNGGGGVVVDSGTTFTMLPAKFY 366

Query:   350 EKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRK 409
               VV EFD R+GRVHERA ++E  +G+SPCYY +Q VK  VP + LHF G+ SSV LPR+
Sbjct:   367 NSVVEEFDSRVGRVHERADRVEPSSGMSPCYYLNQTVK--VPALVLHFAGNRSSVTLPRR 424

Query:   410 NYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKV 469
             NYFY+F+D GDGK +KR +GCLMLMNGGDE EL GG GA LGNYQQQGFEVVYDL   +V
Sbjct:   425 NYFYEFMDGGDGKEEKRKIGCLMLMNGGDESELRGGTGAILGNYQQQGFEVVYDLLNRRV 484

Query:   470 GFARRQCASLWESL 483
             GFA+R+CASLW+SL
Sbjct:   485 GFAKRKCASLWDSL 498
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2153197 AT5G45120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079919 AT3G52500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-68
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-52
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 5e-40
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-36
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 3e-25
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 5e-09
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-08
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-06
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-05
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 6e-05
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 0.001
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  218 bits (557), Expect = 6e-68
 Identities = 103/310 (33%), Positives = 134/310 (43%), Gaps = 79/310 (25%)

Query: 172 CPPFYYAYGDGSLVA-RLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG----EPIGVAGF 226
           C  + Y+YGDGS  +  L  ++ +   SS     + N  FGC     G       G+ G 
Sbjct: 30  CCSYEYSYGDGSSTSGVLATETFTFGDSSVS---VPNVAFGCGTDNEGGSFGGADGILGL 86

Query: 227 GRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAE 286
           GRG LS  +QL S     GN+FSYCLV H          SPLILG   D         + 
Sbjct: 87  GRGPLSLVSQLGST----GNKFSYCLVPHDDTGG----SSPLILGDAADLGG------SG 132

Query: 287 FVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPA 346
            VYT ++ NP +P +Y V LEGISVG + +P P  +  +D  G GG ++DSGTT T LP 
Sbjct: 133 VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192

Query: 347 SLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVAL 406
             Y                                         P + LHF G  + + L
Sbjct: 193 PAY-----------------------------------------PDLTLHFDG-GADLEL 210

Query: 407 PRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEK 466
           P +NYF D             V CL +++       S G  + LGN QQQ F V YDLE 
Sbjct: 211 PPENYFVD---------VGEGVVCLAILSS------SSGGVSILGNIQQQNFLVEYDLEN 255

Query: 467 GKVGFARRQC 476
            ++GFA   C
Sbjct: 256 SRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 486
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.95
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.87
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.85
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.67
PF1365090 Asp_protease_2: Aspartyl protease 95.26
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.32
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 90.48
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.19
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 87.21
PF1365090 Asp_protease_2: Aspartyl protease 84.56
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 82.71
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 82.06
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.16
COG3577215 Predicted aspartyl protease [General function pred 80.99
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 80.9
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-69  Score=557.05  Aligned_cols=392  Identities=32%  Similarity=0.581  Sum_probs=311.1

Q ss_pred             ceEEEEEecCCC-CCC----CChHHHHHHHHHhhHHHhhhhcccC----cccccCC-CCCcEEEEEEecCCCCccEEEEE
Q 011401           24 EFVLPLTHSLSK-TQF----TSTHHLLKSTTTRSAARFRHRHRQQ----QVSLPLS-PGSDYTLSFSLGGSASSPVSLYL   93 (486)
Q Consensus        24 ~~~~~l~~~~~~-~~~----~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~i   93 (486)
                      .++++|+|++++ +|+    ...+++++++++|+.+|++++.+..    .+..++. .+++|+++|.|||| ||++.|+|
T Consensus        24 ~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~v~i~iGTP-pq~~~vi~  102 (431)
T PLN03146         24 GFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNGGEYLMNISIGTP-PVPILAIA  102 (431)
T ss_pred             ceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccccCcccCCccEEEEEEcCCC-CceEEEEE
Confidence            399999999986 332    3456888899999999999885322    2333333 35799999999999 99999999


Q ss_pred             EcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccccccCCCCCCCCCCCC-CCCCC
Q 011401           94 DTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDC-KSFSC  172 (486)
Q Consensus        94 DTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C-~~~~c  172 (486)
                      ||||+++||+|.+  |..|..+ ..|.|||++|+||+.++|.++.|..+...                   ..| .++.|
T Consensus       103 DTGS~l~Wv~C~~--C~~C~~~-~~~~fdps~SST~~~~~C~s~~C~~~~~~-------------------~~c~~~~~c  160 (431)
T PLN03146        103 DTGSDLIWTQCKP--CDDCYKQ-VSPLFDPKKSSTYKDVSCDSSQCQALGNQ-------------------ASCSDENTC  160 (431)
T ss_pred             CCCCCcceEcCCC--CcccccC-CCCcccCCCCCCCcccCCCCcccccCCCC-------------------CCCCCCCCC
Confidence            9999999999998  9999754 46899999999999999999999865431                   123 23568


Q ss_pred             CCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCC----CcceeeecCCCCCchHhhhcccCCCCCCc
Q 011401          173 PPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG----EPIGVAGFGRGLLSFPAQLASLSPHLGNR  247 (486)
Q Consensus       173 ~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~----~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~  247 (486)
                      . |.+.|+||+. .|.+++|+|+|++..+..++++++.|||+..+.+    ..+||||||++.+|+++||..   .+.++
T Consensus       161 ~-y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~---~~~~~  236 (431)
T PLN03146        161 T-YSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGS---SIGGK  236 (431)
T ss_pred             e-eEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhH---hhCCc
Confidence            8 9999999986 8999999999988544446789999999997654    479999999999999999985   23469


Q ss_pred             eEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccC
Q 011401          248 FSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDG  327 (486)
Q Consensus       248 FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~  327 (486)
                      |||||.+..... .  ..|.|+||+....      ....+.||||+.+.. +.+|+|+|++|+||++++.++...+.  .
T Consensus       237 FSycL~~~~~~~-~--~~g~l~fG~~~~~------~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~  304 (431)
T PLN03146        237 FSYCLVPLSSDS-N--GTSKINFGTNAIV------SGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--G  304 (431)
T ss_pred             EEEECCCCCCCC-C--CcceEEeCCcccc------CCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--c
Confidence            999997642111 1  4799999985321      224589999986432 46899999999999999988765553  2


Q ss_pred             CCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeC
Q 011401          328 QGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALP  407 (486)
Q Consensus       328 ~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~  407 (486)
                      .+.+++||||||++++||+++|++|+++|.+.+..  .+..  +....++.||+....  ..+|+|+|+|+|  +++.|+
T Consensus       305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~--~~~~--~~~~~~~~C~~~~~~--~~~P~i~~~F~G--a~~~l~  376 (431)
T PLN03146        305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG--ERVS--DPQGLLSLCYSSTSD--IKLPIITAHFTG--ADVKLQ  376 (431)
T ss_pred             CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcc--ccCC--CCCCCCCccccCCCC--CCCCeEEEEECC--CeeecC
Confidence            34578999999999999999999999999988753  1111  112236789985433  248999999996  899999


Q ss_pred             CcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401          408 RKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL  479 (486)
Q Consensus       408 ~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~  479 (486)
                      +++|++..         ..+..|+++....        ..+|||+.|||++|||||++++|||||+++|+++
T Consensus       377 ~~~~~~~~---------~~~~~Cl~~~~~~--------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        377 PLNTFVKV---------SEDLVCFAMIPTS--------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             cceeEEEc---------CCCcEEEEEecCC--------CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence            99999874         2356899987432        2599999999999999999999999999999863

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 1e-12
3vla_A413 Crystal Structure Of Edgp Length = 413 1e-12
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 1e-09
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 3e-08
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 5e-08
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 1e-05
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 82/423 (19%)
Query: 90  SLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149
           +L +D G   +W+ C        +N          +SST   V C++  CS + S     
Sbjct: 36  NLVVDLGGRFLWVDCD-------QNY---------VSSTYRPVRCRTSQCSLSGS----- 74
Query: 150 DLCAIAKC---PLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLH 206
              A   C   P      + C  F   P       G +   +     +   SS + + + 
Sbjct: 75  --IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP 132
Query: 207 NFTFGCAHTTLGEP-----IGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNR 261
            F F CA T+L +      +G+AG GR  ++ P+Q AS +     +F+ CL S S  SN 
Sbjct: 133 RFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFAS-AFSFKRKFAMCL-SGSTSSN- 189
Query: 262 TRLPSPLILGR--YEDKEKRVNSEEAEFVYTDMLDNP----------KHPYFYSVGLEGI 309
               S +I G   Y      + S++    YT +L NP          +    Y +G++ I
Sbjct: 190 ----SVIIFGNDPYTFLPNIIVSDKT-LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 310 SVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ 369
            +  + +     L  +   G GG  + +   +T+L  S+Y+ V   F +        A  
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIK-----ESAARN 299
Query: 370 IEEKTGLSP---CYYFDQVVKG----NVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGK 422
           I     ++P   C+  D ++      +VP+++L          L  ++  +    +    
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDL---------VLQSESVVWTITGSNSMV 350
Query: 423 AKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGF------ARRQC 476
               NV CL +++GG     S      +G +Q +   V +DL   +VGF      +R  C
Sbjct: 351 YINDNVVCLGVVDGGSNLRTS----IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTC 406
Query: 477 ASL 479
           A+ 
Sbjct: 407 ANF 409
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-72
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 7e-71
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 5e-66
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 1e-12
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-10
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 4e-10
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 4e-10
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-08
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-07
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-07
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-07
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-07
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 6e-07
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 9e-07
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-06
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 4e-06
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 6e-06
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-05
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-05
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 5e-05
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-04
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-04
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 3e-04
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 4e-04
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 5e-04
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 6e-04
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 8e-04
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  235 bits (599), Expect = 1e-72
 Identities = 80/445 (17%), Positives = 156/445 (35%), Gaps = 74/445 (16%)

Query: 61  RQQQVSLPLSPGSD---YTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQE 117
           R   + +P+   +    Y  + +   +     +L +D G   +W+ C             
Sbjct: 5   RPSALVVPVKKDASTLQYVTTINQR-TPLVSENLVVDLGGRFLWVDCDQNYV-------- 55

Query: 118 KPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYY 177
                   SST   V C++  CS + S                      C + +C  F  
Sbjct: 56  --------SSTYRPVRCRTSQCSLSGSIACGDCFNG---------PRPGCNNNTCGVFPE 98

Query: 178 AYGDGSLVA-RLYKDSLSMP----VSSQKSLVLHNFTFGCAHTTLGEPI-----GVAGFG 227
                +     + +D +S+      SS + + +  F F CA T+L + +     G+AG G
Sbjct: 99  NPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLG 158

Query: 228 RGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEF 287
           R  ++ P+Q AS +     +F+ CL   +  ++     +             +   +   
Sbjct: 159 RTRIALPSQFAS-AFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFL-----PNIIVSDKTL 212

Query: 288 VYTDMLDNPK----------HPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDS 337
            YT +L NP               Y +G++ I +  + +     L  +   G GG  + +
Sbjct: 213 TYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKIST 272

Query: 338 GTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKG----NVPTV 393
              +T+L  S+Y+ V   F +         +++        C+  D ++      +VP++
Sbjct: 273 INPYTVLETSIYKAVTEAFIKESA--ARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330

Query: 394 ELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNY 453
           +L     +    +   N                NV CL +++GG            +G +
Sbjct: 331 DLVLQSESVVWTITGSNSMVYI---------NDNVVCLGVVDGGSN----LRTSIVIGGH 377

Query: 454 QQQGFEVVYDLEKGKVGFARRQCAS 478
           Q +   V +DL   +VGF+     S
Sbjct: 378 QLEDNLVQFDLATSRVGFSGTLLGS 402
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.85
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.63
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 92.06
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=3.3e-62  Score=502.60  Aligned_cols=365  Identities=23%  Similarity=0.442  Sum_probs=286.6

Q ss_pred             CcccccCC---CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401           63 QQVSLPLS---PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPAC  139 (486)
Q Consensus        63 ~~~~~p~~---~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C  139 (486)
                      +.+.+|+.   .+++|+++|.|||| ||++.|+|||||+++||+|.+  |              .+|+||+.++|.++.|
T Consensus         7 ~~~~~pv~~d~~~~~Y~~~i~iGTP-pq~~~v~~DTGS~~lWv~c~~--c--------------~~Sst~~~v~C~s~~C   69 (413)
T 3vla_A            7 SALVVPVKKDASTLQYVTTINQRTP-LVSENLVVDLGGRFLWVDCDQ--N--------------YVSSTYRPVRCRTSQC   69 (413)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTT-TEEEEEEEETTCSSEEEECSS--S--------------CCCTTCEECBTTSHHH
T ss_pred             ccEEEEeeecCCCCeEEEEEEcCCC-CcceEEEEeCCChhhhcccCC--C--------------CCCCCcCccCCCcccc
Confidence            45667776   46789999999999 999999999999999999876  4              2799999999999999


Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeC-Ccee-EeEEEEEEEEeccCCCC----ceeecceEEece
Q 011401          140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYG-DGSL-VARLYKDSLSMPVSSQK----SLVLHNFTFGCA  213 (486)
Q Consensus       140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~Yg-dGs~-~G~l~~D~v~~~~~~~~----~~~~~~~~FG~~  213 (486)
                      ......     .|.  .|...  ....|.++.|. |.+.|+ ||+. .|+|++|+|+|+..++.    .+.++++.|||+
T Consensus        70 ~~~~~~-----~~~--~c~s~--~~~~c~~~~c~-~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~  139 (413)
T 3vla_A           70 SLSGSI-----ACG--DCFNG--PRPGCNNNTCG-VFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCA  139 (413)
T ss_dssp             HHTTCC-----EEE--CCSSC--CBTTBCSSEEE-ECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEE
T ss_pred             cccccC-----CCc--ccccC--CCCCCCCCcCc-ceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECc
Confidence            876542     121  12111  12356677898 999995 7765 89999999999853322    368889999999


Q ss_pred             ecCC--C---CcceeeecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeeccccccc-ccccCCCCC-
Q 011401          214 HTTL--G---EPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKE-KRVNSEEAE-  286 (486)
Q Consensus       214 ~~~~--~---~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~-~~~~~~~~~-  286 (486)
                      +.+.  +   .++||||||++.+|++.||..++.+ +++|||||.+..   .   .+|.|+||++|..+ +.. ++.++ 
T Consensus       140 ~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~~~~i-~~~FS~cL~~~~---~---~~G~l~fGg~~~~~~p~~-~~~g~~  211 (413)
T 3vla_A          140 PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSF-KRKFAMCLSGST---S---SNSVIIFGNDPYTFLPNI-IVSDKT  211 (413)
T ss_dssp             CGGGGTTSCTTCCEEEECSSSSSSHHHHHHHHHTC-CSEEEEECCSCS---S---SCEEEEEESCCEEETTTE-EECTTT
T ss_pred             ccccccCcccccccccccCCCCcchHHHHhhhcCC-CceEEEeCCCCC---C---CceEEEECCCcccccccc-cccCCc
Confidence            9752  2   4799999999999999999987666 899999998731   1   57999999998641 000 14677 


Q ss_pred             eeEeecccCCCC----------CceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHH
Q 011401          287 FVYTDMLDNPKH----------PYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEF  356 (486)
Q Consensus       287 l~~tpl~~~~~~----------~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i  356 (486)
                      +.||||+.++..          ..+|+|+|++|+||++.+.++...+..+.++.+++||||||++++||+++|++|+++|
T Consensus       212 l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~  291 (413)
T 3vla_A          212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF  291 (413)
T ss_dssp             SEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHH
T ss_pred             eeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHH
Confidence            999999987533          2689999999999999999887777766667789999999999999999999999999


Q ss_pred             HHHhhc-cccccccccccCCCCCcccccCcc----ccCCCeEEEEEeC-CeeEEEeCCcceeEEccccCCCcccCCceEE
Q 011401          357 DRRLGR-VHERASQIEEKTGLSPCYYFDQVV----KGNVPTVELHFVG-SNSSVALPRKNYFYDFLDAGDGKAKKRNVGC  430 (486)
Q Consensus       357 ~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~~~f~g-g~~~~~l~~~~y~~~~~~~~~~~~~~~~~~C  430 (486)
                      .+++.. .+++.   +....++.||..++..    ...+|+|+|+|+| + ++|+|++++|+++..         .+..|
T Consensus       292 ~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~-~~~~l~~~~y~~~~~---------~~~~C  358 (413)
T 3vla_A          292 IKESAARNITRV---ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNSMVYIN---------DNVVC  358 (413)
T ss_dssp             HHHHHHTTCCEE---CCCTTCSCEEECTTCCEETTEECCCCEEEECSSTT-CEEEECHHHHEEEEE---------TTEEE
T ss_pred             HHHhcccCCCcC---CCCCCCcceeccCCccccccccCCCcEEEEEcCCc-EEEEeCccceEEEeC---------CCcEE
Confidence            988652 12222   1223467899876432    1359999999998 5 899999999998742         35789


Q ss_pred             EEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcC------CCchh
Q 011401          431 LMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARR------QCASL  479 (486)
Q Consensus       431 l~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~------~C~~~  479 (486)
                      ++|+.....    .++.||||++|||++|+|||++|+|||||++      .|+++
T Consensus       359 l~~~~~~~~----~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~~~~~~c~~~  409 (413)
T 3vla_A          359 LGVVDGGSN----LRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF  409 (413)
T ss_dssp             ECEEEEESS----CSSSEEECHHHHTTEEEEEETTTTEEEEEEEGGGGTCCGGGS
T ss_pred             EEEEecCCC----cccceeEehhhhcCeEEEEECCCCEEEEEEecccCcccccCc
Confidence            998854321    1357999999999999999999999999974      57654
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 486
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-38
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-25
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-22
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-22
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-21
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-21
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-21
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 5e-21
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-20
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-20
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 4e-20
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 5e-20
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-20
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 1e-19
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-19
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 1e-19
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-18
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-18
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-16
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 4e-16
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-16
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 6e-16
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  142 bits (357), Expect = 2e-38
 Identities = 91/430 (21%), Positives = 138/430 (32%), Gaps = 82/430 (19%)

Query: 65  VSLPLS---PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAP 121
           V  P++     S YT+ F  G    + +   LD    LVW  C                 
Sbjct: 3   VLAPVTKDPATSLYTIPFHDG----ASL--VLDVAGPLVWSTCDG--GQPP--------- 45

Query: 122 PLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGD 181
                    ++ C SP C  A++       C    C       SD     C  + Y    
Sbjct: 46  --------AEIPCSSPTCLLANAYPAPG--CPAPSC------GSDKHDKPCTAYPYNPVS 89

Query: 182 GSLVA-RLYKDSLSMPV---SSQKSLVLHNFTFGCAHTTLGEPI-----GVAGFGRGLLS 232
           G+  A  L            S   S V       CA + L   +     GVAG     L+
Sbjct: 90  GACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLA 149

Query: 233 FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDM 292
            PAQ+AS +  + NRF  CL +              I G       +         YT +
Sbjct: 150 LPAQVAS-AQKVANRFLLCLPTGGPGV--------AIFGGGPVPWPQFTQS---MPYTPL 197

Query: 293 LDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKV 352
           +     P  + +    I VG   +P P           GG+++ +   + +L   +Y  +
Sbjct: 198 VTKGGSPA-HYISARSIVVGDTRVPVPE-----GALATGGVMLSTRLPYVLLRPDVYRPL 251

Query: 353 VAEFDRRLGRVHE----RASQIEEKTGLSPCYYFDQVVKG----NVPTVELHFVGSNSSV 404
           +  F + L   H      A  +E       CY    +        VP V+L   G  S  
Sbjct: 252 MDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDG-GSDW 310

Query: 405 ALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNG-GDEEELSGGPGATLGNYQQQGFEVVYD 463
            +  KN   D               C+  +   G        P   LG  Q + F + +D
Sbjct: 311 TMTGKNSMVDVKQ---------GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFD 361

Query: 464 LEKGKVGFAR 473
           +EK ++GF+R
Sbjct: 362 MEKKRLGFSR 371
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.6e-55  Score=440.95  Aligned_cols=310  Identities=20%  Similarity=0.269  Sum_probs=248.4

Q ss_pred             cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccccc
Q 011401           64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSA  141 (486)
Q Consensus        64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~  141 (486)
                      ....|+.  .+.+|+++|.|||| ||++.|+|||||+++||+|.+  |..|..+ ..+.|+|++|+|++...        
T Consensus        45 ~~~~~l~n~~d~~Y~~~i~iGtP-~Q~~~vi~DTGSs~~Wv~~~~--C~~~~~~-~~~~yd~~~Sst~~~~~--------  112 (370)
T d3psga_          45 IGDEPLENYLDTEYFGTIGIGTP-AQDFTVIFDTGSSNLWVPSVY--CSSLACS-DHNQFNPDDSSTFEATS--------  112 (370)
T ss_dssp             SCCCTTGGGTTCCEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSGGGT-TSCCBCGGGCTTCEEEE--------
T ss_pred             ccccccccccCCEEEEEEEEcCC-CeEEEEEEeCCCCCeEEECcc--CCCcccc-cccccCCCcccccccCC--------
Confidence            3446775  47899999999999 999999999999999999999  8888644 46799999999998643        


Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC---
Q 011401          142 AHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---  218 (486)
Q Consensus       142 ~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---  218 (486)
                                                    |. |.+.|++|++.|.++.|++.+++     +.++++.|||+....+   
T Consensus       113 ------------------------------~~-~~~~Yg~Gs~~G~~~~d~~~~~~-----~~~~~~~f~~~~~~~~~~~  156 (370)
T d3psga_         113 ------------------------------QE-LSITYGTGSMTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFL  156 (370)
T ss_dssp             ------------------------------EE-EEEESSSCEEEEEEEEEEEEETT-----EEEEEEEEEEECSCCCGGG
T ss_pred             ------------------------------Cc-EEEEeCCceEEEEEEEEEEeeec-----eeeeeeEEEEEeeccCcee
Confidence                                          23 99999999999999999999998     7899999999987654   


Q ss_pred             ---CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeE
Q 011401          219 ---EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVY  289 (486)
Q Consensus       219 ---~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~  289 (486)
                         ..+||+|||++..      +++.+|..++.+..+.||+|+.+..    .  .+|.|+||++|+.+     +.+++.|
T Consensus       157 ~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~----~--~~g~l~~Gg~d~~~-----~~~~l~~  225 (370)
T d3psga_         157 YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND----D--SGSVVLLGGIDSSY-----YTGSLNW  225 (370)
T ss_dssp             GGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----------CEEEEETCCCGGG-----BSSCCEE
T ss_pred             cccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCC----C--CCceEecCCcCchh-----cccceeE
Confidence               4799999998654      4778888888888999999998742    1  57899999999885     8899999


Q ss_pred             eecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccc
Q 011401          290 TDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ  369 (486)
Q Consensus       290 tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~  369 (486)
                      +|+...    .+|.|.+++|.++++.+....         +..+||||||++++||+++|++|.+++.+....       
T Consensus       226 ~p~~~~----~~w~v~~~~i~v~g~~~~~~~---------~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~-------  285 (370)
T d3psga_         226 VPVSVE----GYWQITLDSITMDGETIACSG---------GCQAIVDTGTSLLTGPTSAIANIQSDIGASENS-------  285 (370)
T ss_dssp             EECSEE----TTEEEEECEEESSSSEEECTT---------CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT-------
T ss_pred             Eeeccc----ceEEEEEeeEEeCCeEEecCC---------CccEEEecCCceEeCCHHHHHHHHHHhCCeeec-------
Confidence            998753    579999999999998876432         357999999999999999999999887543211       


Q ss_pred             ccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCce
Q 011401          370 IEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGA  448 (486)
Q Consensus       370 ~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~  448 (486)
                       + ......|+..     ..+|+|+|+|+|  ++|+|+|++|+++.          . ..|+ ++.......  ..++.|
T Consensus       286 -~-~~~~~~C~~~-----~~~P~l~f~f~g--~~~~l~~~~yi~~~----------~-~~c~~~~~~~~~~~--~~~~~~  343 (370)
T d3psga_         286 -D-GEMVISCSSI-----DSLPDIVFTIDG--VQYPLSPSAYILQD----------D-DSCTSGFEGMDVPT--SSGELW  343 (370)
T ss_dssp             -T-CCEECCGGGG-----GGCCCEEEEETT--EEEEECHHHHEEEC----------S-SCEEESEEEECCCT--TSCCEE
T ss_pred             -C-CcEEEecccc-----CCCceEEEEECC--EEEEEChHHeEEEc----------C-CeEEEEEEEcccCC--CCCCcE
Confidence             0 0011245543     348999999976  99999999999873          2 2354 444222111  124579


Q ss_pred             eechhheeccEEEEeCCCCEEEEEcC
Q 011401          449 TLGNYQQQGFEVVYDLEKGKVGFARR  474 (486)
Q Consensus       449 ILG~~fl~~~~vvfD~~~~rIGfa~~  474 (486)
                      |||+.|||++|+|||++|+|||||++
T Consensus       344 ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         344 ILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             EECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             EECHHhhcCEEEEEECCCCEEEEEec
Confidence            99999999999999999999999986
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure