Citrus Sinensis ID: 011406

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------

MKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMGSQAEKENGSGKSNHETNASKEKLVGETQGQGCNGSVDGTGSVKAVMKEENQHQSVEDTSVAGKDS

ccccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccEEEEEcccccccccccEEccccccccccEEEEEccccEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccc

cccccccccccccccccEcccccccccEEccccccccccccccccHHccccccccccccccEEEEEEEcccEEEEEcccEEccccccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEEcEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEcEEEEEccccccccEEEEEccccEEEEEEccHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccc

mkahddgsakslgnseitqvgdaepkaealddgctpglkendsqsvqSQNEKQNQSMAAKSFvgtemvdgkmvnvVDGLKLYEEVSGNSEVSKLVSLVNDLRtagkrgqiqgpayvvskrpirghgreviqlglpivdgppedeiaggtsrdrriepipSLLQDVIDRLVGLQimtvkpdscivdvfnegdhsqphispswfgrpvcILFLTecdmtfgrmigidhpgdyrgtlrlsvapgsllvmqGKSADIAKHAISSIRKQRILVTFtksqpkkltptdgqrlaspgiapsphwgpppgrppnhirhptgpkhfapipttgvlpapairaqipptngvppifvsppvtpampfpapvpippgstgwtaapprhtpppppprlpvpgtgvflpppgsggsssprqvssaatehlipemgsqaekengsgksnhetnaskeklvgetqgqgcngsvdgtGSVKAVMKEEnqhqsvedtsvagkds

mkahddgsakslgnseitqvgdaEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEvsgnsevskLVSLVNDLRtagkrgqiqgpayvvskrpirgHGREVIQlglpivdgppedeiaggtsrdrriepiPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAIssirkqrilvtftksqpkkltptdgqrlASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMgsqaekengsgksnHETNASKEKlvgetqgqgcngsVDGTGSVKAVMKeenqhqsvedtsvagkds

MKAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASpgiapsphwgpppgrppnhirhpTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSppvtpampfpapvpippGSTGWTAApprhtpppppprlpvpgtgvFLpppgsggssspRQVSSAATEHLIPEMGSQAEKENGSGKSNHETNASKEKLVGETQGQGCNGSVDGTGSVKAVMKEENQHQSVEDTSVAGKDS

*************************************************************FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVD*****************EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTF******************************************************VL***AI************IF*********************************************************************************************************************************************

*************************************************************FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTA****QIQG*AYVVSKRPIRGHGREVIQLGLPIVDG***************IEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTF**************************************************************************FVSPPVTPAMPFPA********************************************************************************************************************************

*************************KAEALDDGCTPGL********************AKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQP***********ASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVFLPP*****************EHLIPEMG****************NASKEKLVGETQGQGCNGSVDGTGSVKAVMK******************

******************************************************QSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQP***************IAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVPIPPGSTGWTAAPPRHTPPPPPPRLPVPGTGVF*********************************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
255573240		697	conserved hypothetical protein [Ricinus	0.956	0.667	0.645	1e-158
225424456		698	PREDICTED: uncharacterized protein LOC10	0.977	0.680	0.635	1e-155
118487131		694	unknown [Populus trichocarpa]	0.962	0.674	0.618	1e-150
297737584		672	unnamed protein product [Vitis vinifera]	0.895	0.647	0.649	1e-150
449449076		684	PREDICTED: uncharacterized protein LOC10	0.909	0.646	0.582	1e-141
147790116		1145	hypothetical protein VITISV_002198 [Viti	0.884	0.375	0.662	1e-141
356519405		650	PREDICTED: uncharacterized protein LOC10	0.872	0.652	0.552	1e-136
356510841		681	PREDICTED: uncharacterized protein LOC10	0.921	0.657	0.587	1e-135
224099599		630	predicted protein [Populus trichocarpa]	0.839	0.647	0.608	1e-134
356528192		677	PREDICTED: uncharacterized protein LOC10	0.901	0.646	0.585	1e-134

>gi\|255573240\|ref\|XP_002527549.1\| conserved hypothetical protein [Ricinus communis] gi\|223533099\|gb\|EEF34858.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/483 (64%), Positives = 373/483 (77%), Gaps = 18/483 (3%)

Query: 2   KAHDDGSAKSLGNSEITQVGDAEPKAEALDDGCTPGLKENDSQSVQSQNEKQNQSMAAKS 61
           K H D + KS GNSE +  G+ E +AEA+ +  +P  KE+DS  +Q+Q  K N +   K+
Sbjct: 223 KPHVD-NLKSSGNSEGSLSGNLETEAEAVHEQSSP--KEHDSHFIQNQIVKLNLTTTPKT 279

Query: 62  FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRP 121
           FVG EMVDGK VNVVDGLKLYE++  + EVSKLVSLVNDLR AG++GQ QG AYVVSKRP
Sbjct: 280 FVGAEMVDGKSVNVVDGLKLYEQLLDDVEVSKLVSLVNDLRAAGRKGQFQGQAYVVSKRP 339

Query: 122 IRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDS 181
           ++GHGRE+IQLGLPI D P E+E A GTS+DR+IE IP+LLQ+VI+R V +QIMT+KPDS
Sbjct: 340 MKGHGREMIQLGLPIADAPAEEENAAGTSKDRKIESIPTLLQEVIERFVSMQIMTMKPDS 399

Query: 182 CIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPG 241
           CI+D++NEGDHSQPH+ P WFG+P+ +LFLTECD+TFGR+I  DHPGDYRG+L+L +APG
Sbjct: 400 CIIDIYNEGDHSQPHMWPPWFGKPISVLFLTECDLTFGRVITADHPGDYRGSLKLPLAPG 459

Query: 242 SLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKLTPTDGQRLASPGIAPSPHWGPPP 301
           SLLVMQGK+ D AKHAI +IRKQR+L+TFTKSQPKK   +DGQRL SP  +PS HWGPPP
Sbjct: 460 SLLVMQGKATDFAKHAIPAIRKQRVLLTFTKSQPKKFVQSDGQRLTSPAASPSSHWGPPP 519

Query: 302 GRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPFPAPVP 361
            R PNHIRHP   KH+APIPTTGVLPAP+IR QI P NGV P+FV+ PV   MPFPAPVP
Sbjct: 520 SRSPNHIRHPVS-KHYAPIPTTGVLPAPSIRPQIAPPNGVQPLFVTAPVAAPMPFPAPVP 578

Query: 362 IPPGSTGWTAAPPRHTPPPPPPRL--PVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPE 419
           +PP STGW AA PRH    PP RL  PVPGTGVFLPPPGSG +SSP Q+ +A   +   E
Sbjct: 579 MPPVSTGWPAA-PRH----PPNRLPVPVPGTGVFLPPPGSGNASSP-QIPNATEINFPAE 632

Query: 420 MGSQAEKENGSGKSNHETNAS-KEKLVGETQGQGCNGSVDGTGSVKAVMKEENQHQSVED 478
             S  +KENG GKSNH T AS KEKL  ++Q Q CNG  DG    KA  KEE+Q QSV+ 
Sbjct: 633 TASLQDKENGLGKSNHGTCASPKEKLEAKSQKQDCNGITDG----KAGTKEEHQ-QSVDH 687

Query: 479 TSV 481
           T+V
Sbjct: 688 TAV 690

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225424456\|ref\|XP_002281644.1\| PREDICTED: uncharacterized protein LOC100252594 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|118487131\|gb\|ABK95394.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297737584\|emb\|CBI26785.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449449076\|ref\|XP_004142291.1\| PREDICTED: uncharacterized protein LOC101210274 [Cucumis sativus] gi\|449481289\|ref\|XP_004156139.1\| PREDICTED: uncharacterized LOC101210274 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147790116\|emb\|CAN65462.1\| hypothetical protein VITISV_002198 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356519405\|ref\|XP_003528363.1\| PREDICTED: uncharacterized protein LOC100781773 [Glycine max]	Back alignment and taxonomy information

>gi\|356510841\|ref\|XP_003524142.1\| PREDICTED: uncharacterized protein LOC100809865 [Glycine max]	Back alignment and taxonomy information

>gi\|224099599\|ref\|XP_002311547.1\| predicted protein [Populus trichocarpa] gi\|222851367\|gb\|EEE88914.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356528192\|ref\|XP_003532689.1\| PREDICTED: uncharacterized protein LOC100794176 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
TAIR\|locus:2006717		601	AT1G14710 "AT1G14710" [Arabido	0.549	0.444	0.545	2.5e-83
TAIR\|locus:2139345		569	AT4G02940 [Arabidopsis thalian	0.539	0.460	0.362	1.3e-43
TAIR\|locus:2066385		438	AT2G48080 [Arabidopsis thalian	0.495	0.550	0.362	1.2e-40
TAIR\|locus:2060964		507	AT2G17970 [Arabidopsis thalian	0.487	0.467	0.346	2.7e-36
TAIR\|locus:2135124		520	AT4G36090 [Arabidopsis thalian	0.448	0.419	0.348	7.2e-36
TAIR\|locus:2028486		331	AT1G48980 [Arabidopsis thalian	0.436	0.640	0.328	2.1e-29

TAIR\|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 768 (275.4 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 150/275 (54%), Positives = 210/275 (76%)

Query:     6 DGSAKSLGNSEITQ-VGDAEPKAEALDDG-CTPGLKEND--SQSVQSQNEKQNQSMAAKS 61
             DGS K   +S++ + + ++E + E + +  C  G K+N   S+  Q +N+K+  +  AK+
Sbjct:   184 DGSEKPRSDSKVEKKLEESETQEEIVKNHKCNSGSKDNSLISEQKQEENDKECPASMAKT 243

Query:    62 FVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRP 121
             FV  EM D KMVNVV+GLKLY+++   +EVS+LVSLV +LR AG+RGQ+Q  AYV  KRP
Sbjct:   244 FVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAGRRGQLQSEAYVGYKRP 303

Query:   122 IRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDS 181
              RGHGRE+IQLGLPI D PP+D+    + +DRRIEPIPS L D+I+RLV  QI+ VKPD+
Sbjct:   304 NRGHGREMIQLGLPIADTPPDDD----SIKDRRIEPIPSALSDIIERLVSKQIIPVKPDA 359

Query:   182 CIVDVFNEGDHSQPHISPSWFGRPVCILFLTECDMTFGRMIGIDHPGDYRGTLRLSVAPG 241
             CI+D F+EGDHSQPH+   WFGRP+ +L L+ECD TFGR+I  ++PGDY+G+L+LS+ PG
Sbjct:   360 CIIDFFSEGDHSQPHMFVPWFGRPISVLSLSECDYTFGRVIVSENPGDYKGSLKLSLTPG 419

Query:   242 SLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPK 276
             S+L+++GKSA++AK+AI + RKQRIL++F KS+P+
Sbjct:   420 SVLLVEGKSANLAKYAIHATRKQRILISFIKSKPR 454

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		486
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
pfam13532		190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	2e-05
PRK14971		614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-05
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	8e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam05518		753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam04652		315	pfam04652, DUF605, Vta1 like	0.001
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03132		580	PHA03132, PHA03132, thymidine kinase; Provisional	0.003
pfam04652		315	pfam04652, DUF605, Vta1 like	0.004
PRK14954		620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 299  PPPGRPPNHIRHPTGPKHFAPIPTTGVLPAPAIRAQIPPTNGVPPIFVSPPVTPAMPF-P 357
            PPP   P    H        P       P PA   Q  P     P   + P  PA P  P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLP-------PGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754

Query: 358  APVPIPPGSTG-WTAAPPRHTPPPPPPRLPVP 388
            A    PP + G    APP      PP RL  P
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Length = 3151

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>gnl\|CDD\|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|218621 pfam05518, Totivirus_coat, Totivirus coat protein	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|222997 PHA03132, PHA03132, thymidine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		486
KOG4176		323	consensus Uncharacterized conserved protein [Funct	100.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.97
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.97
KOG3200		224	consensus Uncharacterized conserved protein [Funct	99.94
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.93
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.89
KOG3959		306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.78
KOG2731		378	consensus DNA alkylation damage repair protein [RN	97.86
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.76
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.72
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	97.51
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	95.55
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	95.03
PLN00052		310	prolyl 4-hydroxylase; Provisional	93.88
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	93.59
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	92.78
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	86.35
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	81.53

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=3.9e-34  Score=290.66  Aligned_cols=216  Identities=38%  Similarity=0.643  Sum_probs=201.1

Q ss_pred             cccccccceeeccccCCcccccCCceEEeCCCCCHHHHHHHHHHHHhHHhcCCceeecCceEEecccccccCCceeeecC
Q 011406           54 NQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLG  133 (486)
Q Consensus        54 ~~~~~~k~f~~~E~idg~~VnvvpGL~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G  133 (486)
                      .-.-+.++|...|...+..++.++|+.++...+++.|...|.+.+.++..++++.++.+.++..   +++|++|+++|||
T Consensus        93 ~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G  169 (323)
T KOG4176|consen   93 ANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLG  169 (323)
T ss_pred             ccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecC
Confidence            3446899999999999999999999999999999999999999999999889999999888877   7889999999999


Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-C
Q 011406          134 LPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-T  212 (486)
Q Consensus       134 ~~Y~y~~~ed~n~~g~~~~~~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL-S  212 (486)
                      +++.|.+..+++.      ...+|||..++.+++||+.+.+++.+||+|+||+|.+|++|.+|+|+++|++||++||| |
T Consensus       170 ~~f~y~~~~~d~~------~~~~piPs~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lS  243 (323)
T KOG4176|consen  170 YPFDYRTNNVDES------KPVDPIPSLFKSIIDRLVSWRVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLS  243 (323)
T ss_pred             ceeccCCCccccc------CccCCCchHHHHHHHHhhhhccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeec
Confidence            9999987655443      22789999999999999999999999999999999999999999999999999999988 9


Q ss_pred             ceeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccccccccCCCCCCeEEEEcccccCCCC
Q 011406          213 ECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKL  278 (486)
Q Consensus       213 ~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~RISLTFRkV~p~~~  278 (486)
                      +|+|.|++....+..+.+++...+.|..|++|||.|.+.+...|+++..+.+||+||||++++...
T Consensus       244 e~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~  309 (323)
T KOG4176|consen  244 ECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDPC  309 (323)
T ss_pred             ceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCCC
Confidence            999999999988888888889999999999999999999999999999999999999999998874

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]	Back alignment and domain information

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		486
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	6e-11
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	1e-08
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-07
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-06
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-04

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

 Score = 62.9 bits (152), Expect = 6e-11
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 156 EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSW-FGRPVCIL-FLTE 213
             +P + +  +++ +    +  KPD   ++ +  G     HI     F   +  L   +E
Sbjct: 174 GGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSE 233

Query: 214 CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRIL 267
             M F    GI         + + +   SLLVM G+S  +  H I+  +   + 
Sbjct: 234 IVMDFKHPDGI--------AVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQ 279

PyMOL of 3tht

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		486
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	100.0
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	100.0
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	100.0
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.97
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	98.28
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.28
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	97.26
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	96.92
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	95.75
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	91.31
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	89.11
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	86.89
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	81.77

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

Probab=100.00  E-value=4.1e-35  Score=285.45  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=147.8

Q ss_pred             cCCceEEeCCCCCHHHHHHHHHHH-HhHHhcCCceeecCceEEecccccccCCceeeecC-CcccCCCCCcccCCCCCCC
Q 011406           75 VVDGLKLYEEVSGNSEVSKLVSLV-NDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLG-LPIVDGPPEDEIAGGTSRD  152 (486)
Q Consensus        75 vvpGL~l~pdFLS~eEe~~Lls~L-~el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G-~~Y~y~~~ed~n~~g~~~~  152 (486)
                      .++||.|+++||+.+|+++||+.| ++++|......+||+.+..+|+.        ..+| +.|.|...         ..
T Consensus        38 ~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~~R~~--------~~~g~~~Y~Ys~~---------~~  100 (238)
T 2iuw_A           38 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLT--------AWYGELPYTYSRI---------TM  100 (238)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEE--------EEEECCCTTSCHH---------HH
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCcccccCCee--------EEcCCCccccCCc---------cc
Confidence            467899999999999999999999 57889888888899988887654        3455 56777421         11


Q ss_pred             CCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCC-CCCCCCCC-CCCC--CCEEEEEc-CceeeEeeeccCCCCC
Q 011406          153 RRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGD-HSQPHISP-SWFG--RPVCILFL-TECDMTFGRMIGIDHP  227 (486)
Q Consensus       153 ~~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGd-gI~pHvD~-p~fg--~PIvsLSL-S~cvM~Fgr~~~~~~~  227 (486)
                      ...++||++|..|++++.+  +.+..||+||||+|++|+ +|+||+|. ..|+  .+|++||| ++|+|.|+++...+..
T Consensus       101 ~~~p~wp~~l~~l~~~~~~--~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~~  178 (238)
T 2iuw_A          101 EPNPHWHPVLRTLKNRIEE--NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEEN  178 (238)
T ss_dssp             CCBSSCCHHHHHHHHHHHH--HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC----
T ss_pred             CCCCCCCHHHHHHHHHHHH--HhCCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCcccc
Confidence            2335899999999888743  346899999999999996 99999975 4677  79999999 9999999987542111


Q ss_pred             CC--CcccEEEEecCCcEEEeccccccccccccCCC---CCCeEEEEcccccCCCC
Q 011406          228 GD--YRGTLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILVTFTKSQPKKL  278 (486)
Q Consensus       228 g~--~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~---r~~RISLTFRkV~p~~~  278 (486)
                      ++  ....++|.|++||||||.|++|+.|+|+|++.   +++|||||||++.+...
T Consensus       179 ~~~~~~~~~~i~L~~gsllvM~G~~r~~w~H~I~~~~~~~~~RIsLTfR~v~~~~~  234 (238)
T 2iuw_A          179 GDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPR  234 (238)
T ss_dssp             ----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC---
T ss_pred             CcccCCceEEEEcCCCCEEEEChhhhCccEecCCCcCCCCCCEEEEEeeecccccc
Confidence            21  13579999999999999999999999999996   89999999999987654

PyMOL of 2iuw

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		486
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	3e-08
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	3e-06

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 17/128 (13%)

Query: 157 PIPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISPS--WFGRPVCILFLTE 213
            +P    ++  R          +PD+C+++ +  G     H          P+       
Sbjct: 77  AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVS----- 131

Query: 214 CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRK--------QR 265
             +    +             RL +  G ++V  G+S  +  H I  ++          R
Sbjct: 132 VSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGES-RLFYHGIQPLKAGFHPLTIDCR 190

Query: 266 ILVTFTKS 273
             +TF ++
Sbjct: 191 YNLTFRQA 198

PyMOL of d2fdia1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		486
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.97
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	95.66
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	89.97

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=262.39  Aligned_cols=183  Identities=16%  Similarity=0.208  Sum_probs=143.0

Q ss_pred             cCCceEEeCCCCCHHHHHHHHHHHH-hHHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCC
Q 011406           75 VVDGLKLYEEVSGNSEVSKLVSLVN-DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDR  153 (486)
Q Consensus        75 vvpGL~l~pdFLS~eEe~~Lls~L~-el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~  153 (486)
                      .++||.|++|||+++|++.|++.|. ++.|....+..+|+.+..+|++.     ++.+  ..|.|...         ...
T Consensus        17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~-----~~~d--~~y~y~~~---------~~~   80 (210)
T d2iuwa1          17 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTA-----WYGE--LPYTYSRI---------TME   80 (210)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEE-----EEEC--CCTTSCHH---------HHC
T ss_pred             CcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeE-----EecC--cCcccccc---------ccc
Confidence            4678999999999999999999985 67898888889999888877662     2222  34444311         123


Q ss_pred             CCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCC-CCCCCCCCCC-CCC--CCEEEEEc-CceeeEeeeccCCCCCC
Q 011406          154 RIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEG-DHSQPHISPS-WFG--RPVCILFL-TECDMTFGRMIGIDHPG  228 (486)
Q Consensus       154 ~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pG-dgI~pHvD~p-~fg--~PIvsLSL-S~cvM~Fgr~~~~~~~g  228 (486)
                      ...+||++|..|.+++.+  .....+|+|+||.|.+| ++|+||+|.. .|+  ..|++||| ++|+|.|+++......+
T Consensus        81 ~~~~~~~~l~~l~~~~~~--~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~  158 (210)
T d2iuwa1          81 PNPHWHPVLRTLKNRIEE--NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG  158 (210)
T ss_dssp             CBSSCCHHHHHHHHHHHH--HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC-----
T ss_pred             cCCCCcHHHHHHHHhhhh--hcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCC
Confidence            346799999999999854  34678999999999776 6899999754 464  47999999 99999998865422211


Q ss_pred             --CCcccEEEEecCCcEEEeccccccccccccCC---CCCCeEEEEcccccC
Q 011406          229 --DYRGTLRLSVAPGSLLVMQGKSADIAKHAISS---IRKQRILVTFTKSQP  275 (486)
Q Consensus       229 --~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk---~r~~RISLTFRkV~p  275 (486)
                        ...+.++|.|++||||||.|++|+.|+|+||+   .+++|||||||+++|
T Consensus       159 ~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         159 DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             ---CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             ccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence              12357999999999999999999999999997   467999999999975

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure