Citrus Sinensis ID: 011423

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------

MDVRRRPLKVDDEVNKEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLSLHV

cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccEEEEEcccEEEccEEEccEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEccccEEEcEEEEEccHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEccccEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHccccEEEEEEEEcccccEEEEEEcccEEEEEEEccccccccccc

ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHcccccccHHHHcccccccEEEEEEEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccEEEcccHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEEccEccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHccEEEEEEEEEEcHHHHHHcccccHHHHHHHHHHHHcHHHHHcccccEEcccHHHHHHHHHHHccccHHHHHHHccEEEEEEEccccccEEEEEEcccEEEEEcccHHHHHEEccc

mdvrrrplkvddevnkekrptsptpkasdalplplyltnAIFFTLFFSVAYYLLHRWRekirnstplhVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRatpeawdleeddsdiisrppapisittlssaqdedvVQSVidgsipsyalesklGDCRRAAAIRREALQKMTgrslqglpldgfdydsilgqccempvgyvqipvgiagpllldgfeysvpmattegclvastnrgckaiyasGGAASMLLRDGMTRAPIVRFASAMRASELKFfledpnnfETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTtgdamgmnMVSKGVQNVLDFLqndfpdmdvigisgnfcsdkkpaavnwiegrgksVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIatgqdpaqnvessHCITMMEAIndgkdlhisvtMPSIEVVLSEVELNLLLSLHV

mdvrrrplkvddevnkekrptsptpkasdalplPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTlssaqdedVVQSVIDGSipsyalesklgDCRRAAAIRREALQkmtgrslqglpLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIqcsiagknlYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLSLHV

MDVRRRPLKVDDEVNKEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNlagsavagalggFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPsievvlsevelnlllslHV

******************************LPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDL***************************VVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLS***

**********************************LYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFV****************************************DVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFN**SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLSLH*

MDVRRRPLKVDD**************ASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLSLHV

***************************SDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFIS****************ISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLLLSLHV

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ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		486	2.2.26 [Sep-21-2011]
P29057		575	3-hydroxy-3-methylglutary	N/A	no	0.934	0.789	0.807	0.0
P14891		592	3-hydroxy-3-methylglutary	yes	no	0.969	0.795	0.743	0.0
Q41438		574	3-hydroxy-3-methylglutary	N/A	no	0.969	0.820	0.724	0.0
P48020		596	3-hydroxy-3-methylglutary	N/A	no	0.967	0.788	0.702	0.0
Q01559		604	3-hydroxy-3-methylglutary	N/A	no	0.965	0.776	0.702	0.0
P48021		593	3-hydroxy-3-methylglutary	N/A	no	0.969	0.794	0.715	0.0
P48022		602	3-hydroxy-3-methylglutary	N/A	no	0.967	0.780	0.698	0.0
Q9XEL8		604	3-hydroxy-3-methylglutary	N/A	no	0.965	0.776	0.686	0.0
Q03163		601	3-hydroxy-3-methylglutary	N/A	no	0.967	0.782	0.691	0.0
O64966		585	3-hydroxy-3-methylglutary	N/A	no	0.969	0.805	0.707	0.0

>sp\|P29057\|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1	Back alignment and function desciption

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/482 (80%), Positives = 427/482 (88%), Gaps = 28/482 (5%)

Query: 16  KEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEI 75
           +++ PT  TPKASDALPLPLYLTNA+FFTLFFSVAYYLLHRWR+KIRNSTPLH+VTLSEI
Sbjct: 17  EDRSPT--TPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHIVTLSEI 74

Query: 76  AAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEE--------DDSDIISRPPAPIS 127
            AIVSLIASFIYLLGFFGIDFVQSFI+RA+ + WDLE+        +D  +++ PPA IS
Sbjct: 75  VAIVSLIASFIYLLGFFGIDFVQSFIARASHDVWDLEDTDPNYLIDEDHRLVTCPPANIS 134

Query: 128 ITT------------------LSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRRE 169
             T                  L S +DE +V SV+DG IPSY+LESKLGDC+RAAAIRRE
Sbjct: 135 TKTTIIAAPTKLPTSEPLIAPLVSEEDEMIVNSVVDGKIPSYSLESKLGDCKRAAAIRRE 194

Query: 170 ALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229
           ALQ+MT RSL+GLP++GFDY+SILGQCCEMPVGYVQIPVGIAGPLLL+G EYSVPMATTE
Sbjct: 195 ALQRMTRRSLEGLPVEGFDYESILGQCCEMPVGYVQIPVGIAGPLLLNGREYSVPMATTE 254

Query: 230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289
           GCLVASTNRGCKAIY SGGA S+LL+DGMTRAP+VRFASA RA+ELKFFLEDP+NF+TLA
Sbjct: 255 GCLVASTNRGCKAIYLSGGATSVLLKDGMTRAPVVRFASATRAAELKFFLEDPDNFDTLA 314

Query: 290 VVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349
           VVFN+SSRFARLQ I+CSIAGKNLYIRF C+TGDAMGMNMVSKGVQNVL+FLQ+DF DMD
Sbjct: 315 VVFNKSSRFARLQGIKCSIAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLEFLQSDFSDMD 374

Query: 350 VIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAG 409
           VIGISGNFCSDKKPAAVNWIEGRGKSVVCEA IKEEVV KVLKTNVA+LVELN LKNLAG
Sbjct: 375 VIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVASLVELNMLKNLAG 434

Query: 410 SAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSI 469
           SAVAGALGGFNAHA NIVSAIFIATGQDPAQNVESSHCITMMEA+NDGKDLHISVTMPSI
Sbjct: 435 SAVAGALGGFNAHAGNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSI 494

Query: 470 EV 471
           EV
Sbjct: 495 EV 496

Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants.
Hevea brasiliensis (taxid: 3981)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 4

>sp\|P14891\|HMDH1_ARATH 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Arabidopsis thaliana GN=HMG1 PE=1 SV=1	Back alignment and function description

>sp\|Q41438\|HMDH3_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Solanum tuberosum GN=HMG3 PE=2 SV=1	Back alignment and function description

>sp\|P48020\|HMDH1_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum GN=HMG1 PE=2 SV=1	Back alignment and function description

>sp\|Q01559\|HMDH_NICSY 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris GN=HMGR PE=2 SV=1	Back alignment and function description

>sp\|P48021\|HMDH_CAMAC 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Camptotheca acuminata PE=3 SV=1	Back alignment and function description

>sp\|P48022\|HMDH2_SOLLC 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum lycopersicum GN=HMG2 PE=3 SV=1	Back alignment and function description

>sp\|Q9XEL8\|HMDH2_CAPAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Capsicum annuum GN=HMGR2 PE=2 SV=1	Back alignment and function description

>sp\|Q03163\|HMDH_CATRO 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Catharanthus roseus GN=HMGR PE=2 SV=1	Back alignment and function description

>sp\|O64966\|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
357240555		564	3-hydroxy-3-methylglutaryl coenzyme A re	0.967	0.833	0.816	0.0
357593593		562	3-hydroxy-3-methylglutaryl coenzyme A re	0.969	0.838	0.828	0.0
255539334		576	hmg-CoA reductase, putative [Ricinus com	0.948	0.800	0.815	0.0
4140371		548	3-hydroxy-3-methylglutaryl-coenzyme A re	0.952	0.844	0.805	0.0
164604972		575	hydroxymethylglutaryl-CoA reductase [Hev	0.934	0.789	0.807	0.0
123335		575	RecName: Full=3-hydroxy-3-methylglutaryl	0.934	0.789	0.807	0.0
51599128		575	3-hydroxy-3-methylglutaryl coenzyme A re	0.934	0.789	0.804	0.0
356501322		556	PREDICTED: 3-hydroxy-3-methylglutaryl-co	0.960	0.839	0.792	0.0
225457660		593	PREDICTED: 3-hydroxy-3-methylglutaryl-co	0.930	0.762	0.803	0.0
224065641		588	predicted protein [Populus trichocarpa]	0.969	0.801	0.762	0.0

>gi\|357240555\|gb\|AET72044.1\| 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/486 (81%), Positives = 442/486 (90%), Gaps = 16/486 (3%)

Query: 1   MDVRRRPLKVDDEVNKEKRPTSPTP---KASDALPLPLYLTNAIFFTLFFSVAYYLLHRW 57
           MDVRRRP K     + E+R T+P+P   KASDALPLPLYLTNAIFFTLFFSVAY+LLHRW
Sbjct: 1   MDVRRRPPKPSRVADDEQRTTTPSPQSPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRW 60

Query: 58  REKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSD 117
           R+KIR+STPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRA+ +AWDL+++ + 
Sbjct: 61  RDKIRSSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASNDAWDLDDEAAT 120

Query: 118 IISR------------PPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAA 165
           +I+             PP PI I+ LSS +DE +V+SV+DGSIPS++LESKLGDC+RAA 
Sbjct: 121 VIAARPPPTPLPKLVAPPEPI-ISVLSSVEDEKIVKSVVDGSIPSHSLESKLGDCKRAAL 179

Query: 166 IRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM 225
           IRR+ALQ +TGRSLQGLPLDGFDY+SI GQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM
Sbjct: 180 IRRKALQTVTGRSLQGLPLDGFDYESIQGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM 239

Query: 226 ATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNF 285
           ATTEGCLVAS NRGC+AIYASGGA+++LL+DGMTRAP+VRF++A RA+ELKFFLEDPNNF
Sbjct: 240 ATTEGCLVASANRGCRAIYASGGASTVLLKDGMTRAPVVRFSTAKRAAELKFFLEDPNNF 299

Query: 286 ETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDF 345
           +TLAVVFNRSSR ARL+ IQCSIAGKNLY RFCC+TGDAMGMNMVSKGVQNVLDFLQND+
Sbjct: 300 DTLAVVFNRSSRLARLRSIQCSIAGKNLYTRFCCSTGDAMGMNMVSKGVQNVLDFLQNDY 359

Query: 346 PDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLK 405
           PDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEA IKEEVV KVLKTNVA+LVELN LK
Sbjct: 360 PDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVASLVELNMLK 419

Query: 406 NLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVT 465
           NL GSAVAGALGGFNAHAANIVSAI++ATGQDPAQNVESSHCITMMEA+NDG+DLH+SVT
Sbjct: 420 NLTGSAVAGALGGFNAHAANIVSAIYLATGQDPAQNVESSHCITMMEAVNDGRDLHVSVT 479

Query: 466 MPSIEV 471
           MPSIEV
Sbjct: 480 MPSIEV 485

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357593593\|gb\|ABF56518.2\| 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 [Litchi chinensis]	Back alignment and taxonomy information

>gi\|255539334\|ref\|XP_002510732.1\| hmg-CoA reductase, putative [Ricinus communis] gi\|223551433\|gb\|EEF52919.1\| hmg-CoA reductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|4140371\|gb\|AAD03789.1\| 3-hydroxy-3-methylglutaryl-coenzyme A reductase [Morus alba]	Back alignment and taxonomy information

>gi\|164604972\|dbj\|BAF98282.1\| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]	Back alignment and taxonomy information

>gi|123335|sp|P29057.1|HMDH1_HEVBR RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 gi|16417954|gb|AAL18929.1|AF429388_1 hydroxymethylglutaryl coenzyme A reductase [Hevea brasiliensis] gi|18833|emb|CAA38467.1| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis] gi|18835|emb|CAA38469.1| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis] gi|34223773|gb|AAQ63055.1| 3-hydroxy-3-methylglutaryl-coenzyme A reductase [Hevea brasiliensis]

Back alignment and taxonomy information

>gi\|51599128\|gb\|AAU08214.1\| 3-hydroxy-3-methylglutaryl coenzyme A reductase [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|356501322\|ref\|XP_003519474.1\| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|225457660\|ref\|XP_002275827.1\| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224065641\|ref\|XP_002301898.1\| predicted protein [Populus trichocarpa] gi\|222843624\|gb\|EEE81171.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
TAIR\|locus:2827622		562	HMG2 "3-hydroxy-3-methylglutar	0.950	0.822	0.665	2.7e-164
DICTYBASE\|DDB_G0269142		552	hmgA "hmg CoA reductase A" [Di	0.732	0.644	0.536	4.9e-101
SGD\|S000004540		1054	HMG1 "HMG-CoA reductase" [Sacc	0.728	0.335	0.528	4.2e-95
ZFIN\|ZDB-GENE-040401-2		884	hmgcra "3-hydroxy-3-methylglut	0.683	0.375	0.546	1.4e-94
UNIPROTKB\|F1S2I4		887	HMGCR "3-hydroxy-3-methylgluta	0.736	0.403	0.517	1e-93
CGD\|CAL0001113		1073	HMG1 [Candida albicans (taxid:	0.693	0.314	0.527	2.7e-93
UNIPROTKB\|Q59VR2		1073	HMG1 "Putative uncharacterized	0.693	0.314	0.527	2.7e-93
UNIPROTKB\|E1C420		883	HMGCR "Uncharacterized protein	0.683	0.375	0.558	4.3e-93
UNIPROTKB\|F1P2Y5		875	HMGCR "Uncharacterized protein	0.683	0.379	0.558	4.3e-93
UNIPROTKB\|A7Z064		888	HMGCR "3-hydroxy-3-methylgluta	0.683	0.373	0.543	4.3e-93

TAIR\|locus:2827622 HMG2 "3-hydroxy-3-methylglutaryl-CoA reductase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
 Identities = 318/478 (66%), Positives = 380/478 (79%)

Query:     2 DVRRR-PLKVDDEVNKEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREK 60
             D+RRR P K + E         P  KASDALPLPLYLTN  F +LFF+  Y+LL RWREK
Sbjct:     3 DLRRRFPTKKNGEEISNVAVDPPLRKASDALPLPLYLTNTFFLSLFFATVYFLLSRWREK 62

Query:    61 IRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAW---DLEEDDSD 117
             IRNSTPLHVV LSEI A++  +ASFIYLLGF GID +  F S +  + W    +   +  
Sbjct:    63 IRNSTPLHVVDLSEICALIGFVASFIYLLGFCGIDLI--FRSSSDDDVWVNDGMIPCNQS 120

Query:   118 IISRPPAPI---SI-----TTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRRE 169
             +  R   PI   S+     + L S +DE++V+ VIDG+IPSY+LE+KLGDC+RAAAIRRE
Sbjct:   121 LDCREVLPIKPNSVDPPRESELDSVEDEEIVKLVIDGTIPSYSLETKLGDCKRAAAIRRE 180

Query:   170 ALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229
             A+Q++TG+SL GLPL+GFDY+SILGQCCEMPVGYVQIPVGIAGPLLLDG EYSVPMATTE
Sbjct:   181 AVQRITGKSLTGLPLEGFDYNSILGQCCEMPVGYVQIPVGIAGPLLLDGVEYSVPMATTE 240

Query:   230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289
             GCLVASTNRG KAI+ SGGA S+L++D MTRAP+VRF SA RA+ + F+L+DP+NFE L+
Sbjct:   241 GCLVASTNRGFKAIHLSGGAFSVLVKDAMTRAPVVRFPSARRAALVMFYLQDPSNFERLS 300

Query:   290 VVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349
             ++FN+SSRFARLQ I C+IAG+NLY RF C+TGDAMGMNMVSKGVQNVLDF++++FPDMD
Sbjct:   301 LIFNKSSRFARLQSITCTIAGRNLYPRFACSTGDAMGMNMVSKGVQNVLDFVKSEFPDMD 360

Query:   350 VIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNXXX 409
             VIGISGN+CSDKK +AVNWIEGRGK VVCEA IK E+V KVLKT+V  LVELNTLKN   
Sbjct:   361 VIGISGNYCSDKKASAVNWIEGRGKHVVCEAFIKAEIVEKVLKTSVEALVELNTLKNLVG 420

Query:   410 XXXXXXXXXFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMP 467
                      FNAH++NIVSA+FIATGQDPAQNVESSHC+TM+  + DG DLHISV+MP
Sbjct:   421 SAMAGSLGGFNAHSSNIVSAVFIATGQDPAQNVESSHCMTMI--LPDGDDLHISVSMP 476

GO:0004420 "hydroxymethylglutaryl-CoA reductase (NADPH) activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0015936 "coenzyme A metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016104 "triterpenoid biosynthetic process" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=IMP

GO:0042282 "hydroxymethylglutaryl-CoA reductase activity" evidence=ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

DICTYBASE\|DDB_G0269142 hmgA "hmg CoA reductase A" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

SGD\|S000004540 HMG1 "HMG-CoA reductase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040401-2 hmgcra "3-hydroxy-3-methylglutaryl-Coenzyme A reductase a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S2I4 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

CGD\|CAL0001113 HMG1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59VR2 HMG1 "Putative uncharacterized protein HMG1" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C420 HMGCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2Y5 HMGCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Z064 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41438	HMDH3_SOLTU	1, ., 1, ., 1, ., 3, 4	0.7248	0.9691	0.8205	N/A	no
Q00583	HMDH3_HEVBR	1, ., 1, ., 1, ., 3, 4	0.7015	0.9650	0.8003	N/A	no
Q01559	HMDH_NICSY	1, ., 1, ., 1, ., 3, 4	0.7020	0.9650	0.7764	N/A	no
P29057	HMDH1_HEVBR	1, ., 1, ., 1, ., 3, 4	0.8070	0.9341	0.7895	N/A	no
Q9XHL5	HMDH3_ORYSJ	1, ., 1, ., 1, ., 3, 4	0.6916	0.9156	0.7932	yes	no
P29058	HMDH2_HEVBR	1, ., 1, ., 1, ., 3, 4	0.9160	0.2695	0.6238	N/A	no
P34135	HMDH1_DICDI	1, ., 1, ., 1, ., 3, 4	0.5718	0.7304	0.6431	yes	no
P48020	HMDH1_SOLTU	1, ., 1, ., 1, ., 3, 4	0.7024	0.9670	0.7885	N/A	no
P48021	HMDH_CAMAC	1, ., 1, ., 1, ., 3, 4	0.7159	0.9691	0.7942	N/A	no
O64966	HMDH1_GOSHI	1, ., 1, ., 1, ., 3, 4	0.7075	0.9691	0.8051	N/A	no
P14891	HMDH1_ARATH	1, ., 1, ., 1, ., 3, 4	0.7435	0.9691	0.7956	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.34	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_II0017	hypothetical protein (588 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.70.604.1	SubName- Full=Putative uncharacterized protein; (379 aa)		•	•	0.915
	eugene3.00010972	SubName- Full=Putative uncharacterized protein; (465 aa)	•	•	•	0.907
	grail3.0018023901	3-hydroxy-3-methylglutaryl coenzyme A synthase (EC-2.3.3.10) (465 aa)	•	•	•	0.907
	gw1.III.1750.1	3-hydroxy-3-methylglutaryl coenzyme A synthase (253 aa)		•		0.900
	estExt_Genewise1_v1.C_LG_XIII1046	hypothetical protein (219 aa)		•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		486
cd00643		403	cd00643, HMG-CoA_reductase_classI, Class I hydroxy	0.0
pfam00368		370	pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coen	1e-173
TIGR00920		889	TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co	1e-153
TIGR00533		402	TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylgluta	1e-141
COG1257		436	COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase	1e-125
cd00365		376	cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-	7e-59
TIGR00532		393	TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-Co	9e-11
cd00644		417	cd00644, HMG-CoA_reductase_classII, Class II hydro	9e-08

>gnl\|CDD\|153081 cd00643, HMG-CoA_reductase_classI, Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

 Score =  551 bits (1423), Expect = 0.0
 Identities = 204/339 (60%), Positives = 252/339 (74%), Gaps = 8/339 (2%)

Query: 137 EDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQC 196
           E+++  +  G I  Y LE  L D  RA  IRR  L+K TG+SL+ LP   +DY  +LG+ 
Sbjct: 1   EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRN 60

Query: 197 CEMPVGYVQIPVGIAGPLLLDGF----EYSVPMATTEGCLVASTNRGCKAIYASGGAASM 252
            E  +GYVQ+PVG+AGPLL++G     E+ VPMATTEG LVASTNRGCKAI  SGGA + 
Sbjct: 61  IENVIGYVQVPVGVAGPLLINGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTR 120

Query: 253 LLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKN 312
           +L DGMTRAP+ RF SA  A+E K ++E+  NFE +  V   +SR ARLQ I+  IAG++
Sbjct: 121 VLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVAESTSRHARLQSIKPYIAGRS 178

Query: 313 LYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGR 372
           +Y+RF  TTGDAMGMNMV+K  +   D+++ +FPDM+VI +SGNFC+DKKP+A+NWIEGR
Sbjct: 179 VYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238

Query: 373 GKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFI 432
           GKSVV EATI  EVV +VLKT    LVE+N  KNL GSA+AG  GGFNAHAANIV+AIFI
Sbjct: 239 GKSVVAEATIPREVVKEVLKTTPEALVEVNIAKNLIGSAMAG-SGGFNAHAANIVAAIFI 297

Query: 433 ATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEV 471
           ATGQD AQ VESS+CIT ME   DG DL+ISVTMPS+EV
Sbjct: 298 ATGQDAAQVVESSNCITTMELTADG-DLYISVTMPSLEV 335

Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture. Length = 403

>gnl\|CDD\|201184 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase	Back alignment and domain information

>gnl\|CDD\|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>gnl\|CDD\|129624 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP)	Back alignment and domain information

>gnl\|CDD\|224177 COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|153080 cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>gnl\|CDD\|129623 TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-CoA reductase, degradative	Back alignment and domain information

>gnl\|CDD\|153082 cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		486
KOG2480		602	consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA)	100.0
cd00643		403	HMG-CoA_reductase_classI Class I hydroxymethylglut	100.0
TIGR00920		886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	100.0
TIGR00533		402	HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme	100.0
PF00368		373	HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A redu	100.0
COG1257		436	HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid me	100.0
TIGR00532		393	HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase,	100.0
cd00644		417	HMG-CoA_reductase_classII Class II hydroxymethylgl	100.0
cd00365		376	HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A	100.0
COG1257		436	HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid me	93.39

>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.5e-149  Score=1163.52  Aligned_cols=457  Identities=62%  Similarity=0.928  Sum_probs=429.5

Q ss_pred             CCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhH--hhhccCCCccccchhHHHHHHHH-HHHHHHHHhhcCccccccc
Q 011423           24 TPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWR--EKIRNSTPLHVVTLSEIAAIVSL-IASFIYLLGFFGIDFVQSF  100 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  100 (486)
                      ..++++.+|||+|+++..|+.|||+++|+++++|+  +|+|.|+|||++++++..+.... +++++|+++|++|+++|++
T Consensus        42 ~~~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  121 (602)
T KOG2480|consen   42 VCKASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSV  121 (602)
T ss_pred             cchhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhc
Confidence            45689999999999999999999999999999999  99999999999999999998888 9999999999999999999


Q ss_pred             cCCCCCccccc----ccCCCCCCC--CCCC---Cc-------c-cccCCCCCHHHHHHHHHcCCCCcccccccCCChhHh
Q 011423          101 ISRATPEAWDL----EEDDSDIIS--RPPA---PI-------S-ITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRA  163 (486)
Q Consensus       101 ~~~~~~~~~~~----~~~~~~~~~--~~~~---~~-------~-~~~~~~~~~~ei~~~v~~g~~~~~~les~l~d~~ra  163 (486)
                      +++...+.|..    ...+.+..+  .+|.   +.       . -...-+.+|+||+++|..|++|+|+|||+|+|++||
T Consensus       122 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~l~~~~~~~~~g~~~~~~~d~Eiv~lv~~G~~p~y~lEs~l~d~~Ra  201 (602)
T KOG2480|consen  122 ISDDDVESWVTDRTILCVSGRLVTFPSIPKPIRPLLEILNLFPSGQEVKSLSDEEIVQLVIAGKIPLYALESKLGDAERA  201 (602)
T ss_pred             cccccccccccccccccCCCcccccCCCCCCccchhhhcccCccccccccCChHHHHHHhhcCcccceeccccccchhhh
Confidence            98888887743    222222211  1111   11       0 111245689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC---CCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhhhh
Q 011423          164 AAIRREALQKMTGRSLQ---GLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGC  240 (486)
Q Consensus       164 ~~~RR~~l~~~tg~sl~---~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtEgsLVASanRGa  240 (486)
                      +.+||++|.+.++.+..   .+|+++|||+++.++||||+|||+||||||||||+|||++|||||||||||||||+||||
T Consensus       202 v~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~VPMATTEGaLVAStnRGc  281 (602)
T KOG2480|consen  202 VSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYYVPMATTEGALVASTNRGC  281 (602)
T ss_pred             HHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEEeeeccccchhhHhhccch
Confidence            99999999999998766   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEee
Q 011423          241 KAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCT  320 (486)
Q Consensus       241 Kai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~d  320 (486)
                      |+|+.+||+++++.+|+|||+||++|+++++|.++|.||+.||||+.|+++||++|||+|||+|++.++|+++|+||...
T Consensus       282 KaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq~i~~~iaG~~lyiRF~~~  361 (602)
T KOG2480|consen  282 KAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQSIHTTIAGRNLYIRFCTS  361 (602)
T ss_pred             hheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhheeeEEeecceeEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEecccchHHHHHHHHcCCHHHHHh
Q 011423          321 TGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVE  400 (486)
Q Consensus       321 TgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLkts~~al~e  400 (486)
                      ||||||||||+|++|+++.+|.++||+|++++||||||+||||+|+|||+||||+|+||++||.++|+++|||++++|+|
T Consensus       362 TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~Ip~~vvr~VLkt~v~aLve  441 (602)
T KOG2480|consen  362 TGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATIPGEVVRKVLKTTVEALVE  441 (602)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEeccHHHHHHHHccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeeeEEecCCCcEEEEEEeCceeeEeeeccccc
Q 011423          401 LNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNL  480 (486)
Q Consensus       401 ln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l  480 (486)
                      +|..||+.|||||||+||||+|++|+|+|||||||||+||+||||||+|.||... ++|||+|||||||+||||||||.|
T Consensus       442 ln~~KnliGSAmAGSvGGfNAHAANiVtAvFlAtGQDpAQnVeSSnCiT~Me~~~-d~DL~iSvtMPsIEVGTVGGGT~L  520 (602)
T KOG2480|consen  442 LNILKNLIGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLMEAST-DGDLYISVTMPSIEVGTVGGGTVL  520 (602)
T ss_pred             HHhhhhhhhhhhhccccCcchhHHHHHHHHHHHhCCChHHhcccchhhhhheecc-CCCeEEEEecccEEEEeecCcccc
Confidence            9999999999999999999999999999999999999999999999999999864 469999999999999999999988


Q ss_pred             c
Q 011423          481 L  481 (486)
Q Consensus       481 ~  481 (486)
                      .
T Consensus       521 ~  521 (602)
T KOG2480|consen  521 E  521 (602)
T ss_pred             C
Confidence            5

>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP)	Back alignment and domain information

>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase	Back alignment and domain information

>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	Back alignment and domain information

>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative	Back alignment and domain information

>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		486
1dq8_A		467	Complex Of The Catalytic Portion Of Human Hmg-Coa R		1e-100
2q1l_A		441	Design And Synthesis Of Pyrrole-Based, Hepatoselect		1e-100
3qae_A		458	3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Of		1e-04

>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa Reductase With Hmg And Coa Length = 467

Back alignment and structure

Iteration: 1

Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/335 (53%), Positives = 230/335 (68%), Gaps = 3/335 (0%) Query: 136 DEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPLDGFDYDSIL 193 D +++Q V IP+Y LE+ + R +IRR+ L K SLQ LP ++Y ++ Sbjct: 43 DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 102 Query: 194 GQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASML 253 G CCE +GY+ IPVG+AGPL LD E+ VPMATTEGCLVASTNRGC+AI GGA+S + Sbjct: 103 GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 162 Query: 254 LRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNL 313 L DGMTR P+VR A ++E+K +LE F + F+ +SRFARLQ + SIAG+NL Sbjct: 163 LADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNL 222 Query: 314 YIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRG 373 YIRF +GDAMGMNM+SKG + L L FP+M ++ +SGN+C+DKKPAA+NWIEGRG Sbjct: 223 YIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRG 282 Query: 374 KSVVCEATIKEEVVTKVLKTNVATLVELNTLKNXXXXXXXXXXXXFNAHAANIVSAIFIA 433 KSVVCEA I +VV +VLKT ++E+N KN +NAHAANIV+AI+IA Sbjct: 283 KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIA 342 Query: 434 TGQDPAQNVESSHCITMMEAIN-DGKDLHISVTMP 467 GQD AQNV SS+CIT+MEA +DL+IS TMP Sbjct: 343 CGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMP 377

PyMOL of 1dq8

>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors Length = 441

Back alignment and structure

>pdb|3QAE|A Chain A, 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Of Streptococcus Pneumoniae Length = 458

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		486
2r4f_A		441	3-hydroxy-3-methylglutaryl-coenzyme A reductase; o	1e-145
3qae_A		458	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	9e-99
1r31_A		428	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	7e-85

>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... Length = 441	Back alignment and structure

 Score =  422 bits (1087), Expect = e-145
 Identities = 190/348 (54%), Positives = 246/348 (70%), Gaps = 3/348 (0%)

Query: 127 SITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPL 184
           +        D +++Q V    IP+Y LE+ +    R  +IRR+ L K      SLQ LP 
Sbjct: 21  AEKGAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPY 80

Query: 185 DGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIY 244
             ++Y  ++G CCE  +GY+ IPVG+AGPL LD  E+ VPMATTEGCLVASTNRGC+AI 
Sbjct: 81  RDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIG 140

Query: 245 ASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHI 304
             GGA+S +L DGMTR P+VR   A  ++E+K +LE    F  +   F+ +SRFARLQ +
Sbjct: 141 LGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKL 200

Query: 305 QCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPA 364
             SIAG+NLYIRF   +GDAMGMNM+SKG +  L  L   FP+M ++ +SGN+C+DKKPA
Sbjct: 201 HTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPA 260

Query: 365 AVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAA 424
           A+NWIEGRGKSVVCEA I  +VV +VLKT    ++E+N  KNL GSA+AG++GG+NAHAA
Sbjct: 261 AINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAA 320

Query: 425 NIVSAIFIATGQDPAQNVESSHCITMMEAIN-DGKDLHISVTMPSIEV 471
           NIV+AI+IA GQD AQNV SS+CIT+MEA     +DL+IS TMPSIE+
Sbjct: 321 NIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEI 368

PyMOL of 2r4f

>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A Length = 458	Back alignment and structure

>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A* Length = 428	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		486
2r4f_A		441	3-hydroxy-3-methylglutaryl-coenzyme A reductase; o	100.0
1r31_A		428	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	100.0
3qae_A		458	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	100.0

>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...	Back alignment and structure

Probab=100.00  E-value=6.4e-120  Score=940.19  Aligned_cols=349  Identities=55%  Similarity=0.902  Sum_probs=341.5

Q ss_pred             CCCHHHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHH--hCCCCCCCCCCCCChhhhhccccccceEEeeeceee
Q 011423          133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKM--TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI  210 (486)
Q Consensus       133 ~~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~--tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGV  210 (486)
                      .++||||++++.+|++|+|+||+.++|++||+.+||++|++.  ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus        27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv  106 (441)
T 2r4f_A           27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV  106 (441)
T ss_dssp             SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred             cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence            458999999999999999999999999999999999999999  778899999999999999999999999999999999


Q ss_pred             ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 011423          211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV  290 (486)
Q Consensus       211 AGPLlInG~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~  290 (486)
                      ||||+|||++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|+++|++|++|++
T Consensus       107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~  186 (441)
T 2r4f_A          107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE  186 (441)
T ss_dssp             EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             HHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeee
Q 011423          291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIE  370 (486)
Q Consensus       291 ~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~  370 (486)
                      +++++||||||++|++++.|+++|+||.|||||||||||||+++|++|+||+++||++++++||||||+||||+|+|||+
T Consensus       187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~  266 (441)
T 2r4f_A          187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE  266 (441)
T ss_dssp             HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred             HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeee
Q 011423          371 GRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITM  450 (486)
Q Consensus       371 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~  450 (486)
                      ||||+|+||+++|++|++++++|++++++++|..||++|||+||++||||||+||||+||||||||||||+||||+|+|.
T Consensus       267 gRGk~V~ae~~i~~~vv~~vl~ts~~a~vd~~~aknl~gsa~ag~~gt~Nkh~aNgI~Av~lATGqD~a~~vEss~~~t~  346 (441)
T 2r4f_A          267 GRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL  346 (441)
T ss_dssp             CCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEE
T ss_pred             CCceEEEEEEecHHHHHHHHHCcCHHHHHHHHHHhhhhHHHhhccCCcCCCChHHHhHHHhhhcCCcHHHHHhhccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEec-CCCcEEEEEEeCceeeEeeecccccc
Q 011423          451 MEAIN-DGKDLHISVTMPSIEVVLSEVELNLL  481 (486)
Q Consensus       451 ~e~~~-dg~dL~~SvtLPSL~VGTVGGgt~l~  481 (486)
                      ||..+ ||+|||+|||||||+||||||||+|+
T Consensus       347 le~~~~~~~dL~~svtlPsL~VGTVGGgT~lp  378 (441)
T 2r4f_A          347 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLL  378 (441)
T ss_dssp             EEEESTTSCEEEEEEEEEEECCCSBSGGGGSH
T ss_pred             eeeeccCCCeEEEEEECCCceEEeecCcCCCH
Confidence            99886 55699999999999999999999974

PyMOL of 2r4f

>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*	Back alignment and structure

>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		486
d1dqaa1		117	d.58.20.1 (A:587-703) NAD-binding domain of HMG-Co	6e-62
d1dqaa4		292	d.179.1.1 (A:462-586,A:704-870) Substrate-binding	1e-58
d1dqaa4		292	d.179.1.1 (A:462-586,A:704-870) Substrate-binding	5e-32
d1r31a2		266	d.179.1.1 (A:3-110,A:221-378) Substrate-binding do	3e-47

>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 117	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: NAD-binding domain of HMG-CoA reductase
family: NAD-binding domain of HMG-CoA reductase
domain: NAD-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  195 bits (498), Expect = 6e-62
 Identities = 64/117 (54%), Positives = 84/117 (71%)

Query: 257 GMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIR 316
           GMTR P+VR   A  ++E+K +LE    F  +   F+ +SRFARLQ +  SIAG+NLYIR
Sbjct: 1   GMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIR 60

Query: 317 FCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRG 373
           F   +GDAMGMNM+SKG +  L  L   FP+M ++ +SGN+C+DKKPAA+NWIEGRG
Sbjct: 61  FQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRG 117

PyMOL of d1dqaa1

>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Length = 266	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		486
d1dqaa4		292	Substrate-binding domain of HMG-CoA reductase {Hum	100.0
d1r31a2		266	Substrate-binding domain of HMG-CoA reductase {Pse	100.0
d1dqaa1		117	NAD-binding domain of HMG-CoA reductase {Human (Ho	100.0
d1r31a1		110	NAD-binding domain of HMG-CoA reductase {Pseudomon	99.81
d1r31a2		266	Substrate-binding domain of HMG-CoA reductase {Pse	97.39
d3bypa1		82	Putative Zinc transporter CzrB {Thermus thermophil	86.62

>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Substrate-binding domain of HMG-CoA reductase
superfamily: Substrate-binding domain of HMG-CoA reductase
family: Substrate-binding domain of HMG-CoA reductase
domain: Substrate-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-77  Score=593.72  Aligned_cols=232  Identities=56%  Similarity=0.854  Sum_probs=220.5

Q ss_pred             CCHHHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHHhCC--CCCCCCCCCCChhhhhccccccceEEeeeceeee
Q 011423          134 AQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIA  211 (486)
Q Consensus       134 ~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~--sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVA  211 (486)
                      ++||||+++|.+|++|+|+||+.|+|++||+.+||++|++.++.  ++++||+++|||+++.++||||+||++|||+|||
T Consensus         1 ~~d~e~~~~v~~g~i~~y~lE~~l~~~~~av~iRR~~~~~~~~~~~~l~~lp~~~~dy~~v~~~~~EN~IG~~~lPlGvA   80 (292)
T d1dqaa4           1 LSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVA   80 (292)
T ss_dssp             CCHHHHHHHHHHTTCCGGGHHHHSSSHHHHHHHHHHHHHTTCSSTTGGGGSCCTTCCHHHHTTTTCSSEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHcCCCchHHHHHhcCChHHHHHHHHHHHHHhhCCccchhhCCCCCcCHHHHhccCccceeeeEeccceee
Confidence            37999999999999999999999999999999999999999985  7999999999999999999999999999999999


Q ss_pred             cceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHH
Q 011423          212 GPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVV  291 (486)
Q Consensus       212 GPLlInG~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~  291 (486)
                      |||+|||++|+|||||||||||||+|||||+++.+||++++++.|                                   
T Consensus        81 gpl~InG~~y~VPMATeEgslVAS~nrGaK~i~~~GG~~~~v~~d-----------------------------------  125 (292)
T d1dqaa4          81 GPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLAD-----------------------------------  125 (292)
T ss_dssp             EEEEETTEEEEEEEECSCTTHHHHHHHHHHHHHHTTCBEEEEEEE-----------------------------------
T ss_pred             ccEEECCeEEEEeeeechhHHHHHhhHHHHHHHhcCCCEEEEehh-----------------------------------
Confidence            999999999999999999999999999999999999999876544                                   


Q ss_pred             HhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeec
Q 011423          292 FNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEG  371 (486)
Q Consensus       292 an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~g  371 (486)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (292)
T d1dqaa4         126 --------------------------------------------------------------------------------  125 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeee
Q 011423          372 RGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMM  451 (486)
Q Consensus       372 RGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~  451 (486)
                        |.++||+++++++++++|+++++++++++..+|++||+++|+++|||||+||||+|||||||||||+++|||||+|.+
T Consensus       126 --~~~~a~~~~~~~vv~~~Lk~~~e~l~~~~~~~nl~gsa~ag~~~g~N~~i~NgI~Av~lATGqD~a~v~~ss~a~t~~  203 (292)
T d1dqaa4         126 --KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLM  203 (292)
T ss_dssp             --EEEEEEEEECHHHHHHTTSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEEE
T ss_pred             --hhhhhhccCcHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccccchhHhhHHHHHHhhccchHHHHHHhhcceEEE
Confidence              346788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEec-CCCcEEEEEEeCceeeEeeeccccccc
Q 011423          452 EAIN-DGKDLHISVTMPSIEVVLSEVELNLLL  482 (486)
Q Consensus       452 e~~~-dg~dL~~SvtLPSL~VGTVGGgt~l~~  482 (486)
                      |... +++|||+|+|||||+||||||||+|+.
T Consensus       204 ~~~~~~~~~L~~s~tlPsl~VGtVGGgT~l~~  235 (292)
T d1dqaa4         204 EASGPTNEDLYISCTMPSIEIGTVGGGTNLLP  235 (292)
T ss_dssp             EEETTTTCEEEEEEEEEEECCCSBSGGGGSHH
T ss_pred             EEEEcCCCCEEEEEEecceeeeeccCcccCch
Confidence            8774 567999999999999999999999764

PyMOL of d1dqaa4

>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}	Back information, alignment and structure

>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}	Back information, alignment and structure

>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}	Back information, alignment and structure

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure