Citrus Sinensis ID: 011429

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------

MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS

cccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEccccccccccccEEEEEcccHHHHHHHHHHHHHcccccccHHHHHHHHccccEEEEEEccccEEcccEEEEEEEEcccccccccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEcccEEEEEcEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEEEcccccccccccccccEEcccccccccccccEEEEcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccc

cccccccccEEEEEcccccccccHHccHHHHHHHHcccccccccccccHEcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEccccccccccHHHHHHHHHccEccEEHHHHHHHHHHHccEEEEccHHHHHHcHHHHHHHHcccccccHHHHHHEEEEcccEEEEEccccEEEccEEEEEEEEcccccccEEcccccccEEEEEEcccEEEEEEcccccccccccccEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEcccccEEEEcccEEEEEcccccEEEEEEEEEccccccccccEEEEEccccccEEEEEEEEEccccccEEEEEEEEccccccccccEEEcEEEEccccccccccEEEEccccEEEEEEEEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccc

msalsfsphlhininrnpkltpkrrakpnkiRVSLqttfpqatfsdpFVIQLAESledslpssssslpqplplqklrdsssqtllstpwpsrkdepfrftdtsmikssqiqpitrpsssldvstdaqfpsLVLIDGFiqnsalnlsnlpdgvyvgsLLGVSDGIMKRVSDFIsefqcgdlfwsingmgapdlgviyvpagckvenpiYLKYLSveggnvdskklpisnpRVVVLVEEGGEVGIIEEFvgkegndcywaNSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYelvevstggklsrhnvhvqqlgpdteteLSSFHLLVSDQTQDLHSRllldhprgycrQLHKCIVAHSlgqavfdgnvkvnryaqqtdagqLTRSlllepratvnvkpnlqiiaddvkcshgaaisdlEESQLFYFQARGIDLETARKALVFSFGaevierfpypsirNQVVSHVKNlmgttdvsfs

msalsfsphlhininrnpkltpkrraKPNKIRVSLQttfpqatfsDPFVIQLAESLEDSLPSSSSSLPqplplqklrdsssqtllstpwpsrkdepFRFTDTsmikssqiqpitrpssslDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGgnvdskklpisnPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLlepratvnvkpnLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKnlmgttdvsfs

MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDslpssssslpqplplqKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRvvvlveeggevgiieefvgkegNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS

*************************************TFPQATFSDPFVIQ***************************************************************************QFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQ*********LSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM********

**********************************************PFVIQLAESLEDSL************LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTT*****

MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESL*************PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIK****************STDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS

****SFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGT******

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		486	2.2.26 [Sep-21-2011]
Q9LQK7		475	Protein ABCI7, chloroplas	yes	no	0.942	0.964	0.682	0.0
Q55792		453	UPF0051 protein slr0076 O	N/A	no	0.792	0.849	0.348	1e-62
P77689		423	FeS cluster assembly prot	N/A	no	0.732	0.841	0.272	7e-31
Q49682		392	UPF0051 protein ML0594 OS	yes	no	0.366	0.454	0.301	1e-16
O53153		397	UPF0051 protein Rv1462/MT	yes	no	0.5	0.612	0.277	3e-16
P59973		397	UPF0051 protein Mb1497 OS	yes	no	0.5	0.612	0.274	9e-16
Q9ZS97		557	UPF0051 protein ABCI8, ch	no	no	0.543	0.473	0.25	9e-16
O32162		465	FeS cluster assembly prot	yes	no	0.512	0.535	0.249	1e-14
Q8CTA3		465	UPF0051 protein SE_0610 O	yes	no	0.516	0.539	0.231	5e-14
Q5HQP8		465	UPF0051 protein SERP0500	yes	no	0.516	0.539	0.231	8e-14

>sp\|Q9LQK7\|AB7I_ARATH Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1	Back alignment and function desciption

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/469 (68%), Positives = 378/469 (80%), Gaps = 11/469 (2%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + V       QA+FSDPFV+QLAESLEDSL +S SS      
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
           LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct: 67  LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
           PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPRV VLVEEGGE+GI+EEFVG
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
           K+    YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query: 370 QAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE 429
           QAVFDGNV+VNR+AQQT+AGQLTRSLLL+PRATVN+KPNLQIIADDVKCSHGAAISDLEE
Sbjct: 367 QAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATVNIKPNLQIIADDVKCSHGAAISDLEE 426

Query: 430 SQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM 478
            QLFYFQARGIDLETAR+AL+ SFG+EVIE+FP   IR+Q  +HVK L+
Sbjct: 427 DQLFYFQARGIDLETARRALISSFGSEVIEKFPNREIRDQARNHVKGLL 475

Arabidopsis thaliana (taxid: 3702)

>sp\|Q55792\|Y076_SYNY3 UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0076 PE=3 SV=1	Back alignment and function description

>sp\|P77689\|SUFD_ECOLI FeS cluster assembly protein SufD OS=Escherichia coli (strain K12) GN=sufD PE=1 SV=1	Back alignment and function description

>sp\|Q49682\|Y594_MYCLE UPF0051 protein ML0594 OS=Mycobacterium leprae (strain TN) GN=ML0594 PE=3 SV=1	Back alignment and function description

>sp\|O53153\|Y1462_MYCTU UPF0051 protein Rv1462/MT1509 OS=Mycobacterium tuberculosis GN=Rv1462 PE=3 SV=1	Back alignment and function description

>sp\|P59973\|Y1497_MYCBO UPF0051 protein Mb1497 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1497 PE=3 SV=1	Back alignment and function description

>sp\|Q9ZS97\|AB8I_ARATH UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1	Back alignment and function description

>sp\|O32162\|SUFB_BACSU FeS cluster assembly protein SufB OS=Bacillus subtilis (strain 168) GN=sufB PE=3 SV=1	Back alignment and function description

>sp\|Q8CTA3\|Y610_STAES UPF0051 protein SE_0610 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0610 PE=3 SV=1	Back alignment and function description

>sp\|Q5HQP8\|Y500_STAEQ UPF0051 protein SERP0500 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0500 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
225427242		495	PREDICTED: protein ABCI7, chloroplastic-	0.954	0.937	0.697	0.0
297742116		480	unnamed protein product [Vitis vinifera]	0.954	0.966	0.697	0.0
147775510		593	hypothetical protein VITISV_028794 [Viti	0.962	0.789	0.693	0.0
449461525		496	PREDICTED: protein ABCI7, chloroplastic-	0.973	0.953	0.668	0.0
255588981		484	Protein sufD, putative [Ricinus communis	0.967	0.971	0.713	0.0
18398463		475	protein ABCI7 [Arabidopsis thaliana] gi\|	0.942	0.964	0.682	0.0
297851692		476	hypothetical protein ARALYDRAFT_473442 [	0.944	0.964	0.682	0.0
21554655		475	unknown [Arabidopsis thaliana]	0.942	0.964	0.680	0.0
224138876		456	predicted protein [Populus trichocarpa]	0.919	0.980	0.747	1e-179
359475767		527	PREDICTED: LOW QUALITY PROTEIN: protein	0.948	0.874	0.686	1e-175

>gi\|225427242\|ref\|XP_002278544.1\| PREDICTED: protein ABCI7, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/492 (69%), Positives = 407/492 (82%), Gaps = 28/492 (5%)

Query: 1   MSALSFSPHLHININRNPKL----------TPKRRAKPNKIRVSLQTTFPQATFSDPFVI 50
           M+A   SPHL +N    PKL          TPK R+ P KIR         A FSDPFV+
Sbjct: 16  MAATLLSPHLLLN----PKLSIQNSASKFPTPKSRSTP-KIR---------AAFSDPFVL 61

Query: 51  QLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
           Q+AESLEDSL SSS+S P PL  QKLRD+SSQT+LSTPWPSRKDEPFRFTDTS+I+ SQ+
Sbjct: 62  QIAESLEDSLSSSSTSSPPPL--QKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQV 119

Query: 111 QPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-SDGIMKRVS 169
            PI+ P +S+ +STD QFP+L ++DG I  S  NLS LP GV+VGSL  + S+ I K+VS
Sbjct: 120 TPISHPPTSIAISTDTQFPNLSIVDGHIVYSLSNLSQLPTGVFVGSLSSLPSETITKKVS 179

Query: 170 DFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229
           +F++ F+ GDLFWS+NG+G PD+ V+YVPAGC+VE P+++ Y SVEGG++ SKKLP+SNP
Sbjct: 180 EFVANFE-GDLFWSLNGLGTPDMAVVYVPAGCRVEMPLHIVYYSVEGGDIGSKKLPVSNP 238

Query: 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKW 289
           RV VLVEEGGE+G+IEE+VG   N CYWAN+V EVVIG+G KV+HSY+Q+QSL+AAHIKW
Sbjct: 239 RVFVLVEEGGEIGVIEEYVGVGENKCYWANTVTEVVIGEGAKVKHSYIQSQSLSAAHIKW 298

Query: 290 TAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349
           T+V+Q ++S YEL+EVSTGGKLSRHNV++QQ+GPDT TELS+FHL V DQTQDLHSRL+L
Sbjct: 299 TSVQQGSSSSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDQTQDLHSRLVL 358

Query: 350 DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNL 409
           DHPRGY RQLHKCIVAHSLGQAVFDGN+KVNRYAQ+TDAGQLTRSLLLEPRATVNVKPNL
Sbjct: 359 DHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNRYAQRTDAGQLTRSLLLEPRATVNVKPNL 418

Query: 410 QIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQ 469
           QIIADDVKCSHGAAISDLEE+QLFYF ARGIDLETARKAL+FSFG EVIER PY SIR +
Sbjct: 419 QIIADDVKCSHGAAISDLEENQLFYFLARGIDLETARKALIFSFGGEVIERLPYSSIRKK 478

Query: 470 VVSHVKNLMGTT 481
           V +H+K L+  T
Sbjct: 479 VETHIKALLEPT 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297742116\|emb\|CBI33903.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147775510\|emb\|CAN69419.1\| hypothetical protein VITISV_028794 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449461525\|ref\|XP_004148492.1\| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus] gi\|449521999\|ref\|XP_004168016.1\| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255588981\|ref\|XP_002534787.1\| Protein sufD, putative [Ricinus communis] gi\|223524572\|gb\|EEF27596.1\| Protein sufD, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|18398463|ref|NP_564404.1| protein ABCI7 [Arabidopsis thaliana] gi|75180162|sp|Q9LQK7.1|AB7I_ARATH RecName: Full=Protein ABCI7, chloroplastic; AltName: Full=ABC transporter I family member 7; Short=ABC transporter ABCI.7; Short=AtABCI7; AltName: Full=Non-intrinsic ABC protein 6; AltName: Full=Plastid SufD-like protein; Flags: Precursor gi|8920626|gb|AAF81348.1|AC007767_28 Contains an uncharacterized protein family (UPF0051) domain PF|01458 [Arabidopsis thaliana] gi|115646721|gb|ABJ17094.1| At1g32500 [Arabidopsis thaliana] gi|332193373|gb|AEE31494.1| protein ABCI7 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297851692\|ref\|XP_002893727.1\| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata] gi\|297339569\|gb\|EFH69986.1\| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|21554655\|gb\|AAM63647.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224138876\|ref\|XP_002326712.1\| predicted protein [Populus trichocarpa] gi\|222834034\|gb\|EEE72511.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359475767\|ref\|XP_003631753.1\| PREDICTED: LOW QUALITY PROTEIN: protein ABCI7, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		486
TAIR\|locus:2033734		475	ABCI7 "AT1G32500" [Arabidopsis	0.942	0.964	0.631	1.1e-153
UNIPROTKB\|Q60A79		434	sufD "FeS assembly protein Suf	0.415	0.465	0.370	5.6e-34
UNIPROTKB\|Q83BX9		426	sufD "SufD" [Coxiella burnetii	0.790	0.901	0.272	3e-30
TIGR_CMR\|CBU_1358		426	CBU_1358 "conserved hypothetic	0.790	0.901	0.272	3e-30
UNIPROTKB\|P77689		423	sufD "SufD component of SufBCD	0.763	0.877	0.270	1.6e-29
TIGR_CMR\|SPO_2017		426	SPO_2017 "FeS assembly protein	0.440	0.502	0.278	2.9e-17
GENEDB_PFALCIPARUM\|PF11_0044		1462	PF11_0044 "hypothetical protei	0.508	0.168	0.261	6.8e-16
UNIPROTKB\|Q8IIW9		1462	PF11_0044 "Iron-sulfur assembl	0.508	0.168	0.261	6.8e-16
UNIPROTKB\|O53153		397	MT1509 "UPF0051 protein Rv1462	0.458	0.561	0.276	2.9e-14
UNIPROTKB\|P67125		846	MT1508 "UPF0051 protein Rv1461	0.417	0.239	0.259	8.9e-11

TAIR\|locus:2033734 ABCI7 "AT1G32500" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 296/469 (63%), Positives = 350/469 (74%)

Query:    13 NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDXXXXXXXXXXXXXX 72
             N++  PKL   RR     + V  Q     A+FSDPFV+QLAESLED              
Sbjct:    15 NLSSKPKLKSNRRTTSTSVSVRAQ-----ASFSDPFVLQLAESLEDSLSASPSSSLPLQ- 68

Query:    73 XXKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
               ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct:    69 --RIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query:   130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
             + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct:   127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query:   190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRXXXXXXXXXXXXXXXXXXX 249
             PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPR                   
Sbjct:   187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query:   250 XXXNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
                   YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct:   247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query:   310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
             KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct:   307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query:   370 QAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE 429
             QAVFDGNV+VNR+AQQT+AGQLTRSLLL+PRATVN+KPNLQIIADDVKCSHGAAISDLEE
Sbjct:   367 QAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATVNIKPNLQIIADDVKCSHGAAISDLEE 426

Query:   430 SQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM 478
              QLFYFQARGIDLETAR+AL+ SFG+EVIE+FP   IR+Q  +HVK L+
Sbjct:   427 DQLFYFQARGIDLETARRALISSFGSEVIEKFPNREIRDQARNHVKGLL 475

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;RCA;IDA

GO:0006810 "transport" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009536 "plastid" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB\|Q60A79 sufD "FeS assembly protein SufD" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

UNIPROTKB\|Q83BX9 sufD "SufD" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1358 CBU_1358 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

UNIPROTKB\|P77689 sufD "SufD component of SufBCD Fe-S cluster scaffold complex" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2017 SPO_2017 "FeS assembly protein SufD" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF11_0044 PF11_0044 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IIW9 PF11_0044 "Iron-sulfur assembly protein, sufD, putative" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|O53153 MT1509 "UPF0051 protein Rv1462/MT1509" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|P67125 MT1508 "UPF0051 protein Rv1461/MT1508" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQK7	AB7I_ARATH	No assigned EC number	0.6823	0.9423	0.9642	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015786001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (480 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002047001	SubName- Full=Chromosome undetermined scaffold_125, whole genome shotgun sequence; (321 aa)	•	•	•	•	•	•		0.993
	GSVIVG00017304001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (463 aa)	•	•	•			•		0.937
	GSVIVG00005318001	SubName- Full=Chromosome undetermined scaffold_1017, whole genome shotgun sequence; (554 aa)	•	•	•	•	•	•	•	0.935
	GSVIVG00002729001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (155 aa)	•					•		0.755
	GSVIVG00021623001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (133 aa)	•		•			•		0.516
	GSVIVG00019378001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (112 aa)	•					•		0.512
	GSVIVG00010743001	SubName- Full=Chromosome chr10 scaffold_282, whole genome shotgun sequence; Flags- Fragment; (72 aa)		•						0.506
	GSVIVG00017707001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (381 aa)	•					•		0.454
	GSVIVG00020811001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (145 aa)	•					•		0.449
	GSVIVG00011471001	SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (454 aa)	•					•		0.434

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		486
pfam01458		230	pfam01458, UPF0051, Uncharacterized protein family	5e-74
TIGR01981		275	TIGR01981, sufD, FeS assembly protein SufD	3e-73
COG0719		412	COG0719, SufB, Cysteine desulfurase activator SufB	7e-67
PRK10948		424	PRK10948, PRK10948, cysteine desulfurase activator	1e-47
TIGR01980		448	TIGR01980, sufB, FeS assembly protein SufB	3e-17
CHL00085		485	CHL00085, ycf24, putative ABC transporter	1e-09
PRK11814		486	PRK11814, PRK11814, cysteine desulfurase activator	2e-05

>gnl\|CDD\|216514 pfam01458, UPF0051, Uncharacterized protein family (UPF0051)	Back alignment and domain information

 Score =  232 bits (595), Expect = 5e-74
 Identities = 89/227 (39%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 227 SNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAH 286
             PR +++VEEG EV IIE        D    N V E+++G+G +++++ +QN+   + H
Sbjct: 6   QFPRNLIIVEEGAEVTIIEGCASPGAGD-GLHNGVTEIIVGEGARLKYTKIQNEGKGSIH 64

Query: 287 IKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSR 346
              T VR E  +  E   VS GGKLSR++  V   G   E EL+  +L   DQ  D H++
Sbjct: 65  FATTRVRLEEDATLESTSVSLGGKLSRNDPDVDLNGEGAEAELNGVYLAKGDQHVDTHTK 124

Query: 347 LLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVK 406
           +  + P    R L+K ++     + VF G +KV + AQ+TD  Q  R+LLL  +A V+ K
Sbjct: 125 VRHNGPNTRSRILYKGVLKDR-SRGVFRGKIKVEKGAQKTDGHQECRNLLLSDKARVDTK 183

Query: 407 PNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 453
           P L+I ADDVKCSHGA +  L+E QLFY  +RG+  E A++ L+  F
Sbjct: 184 PELEIYADDVKCSHGATVGQLDEEQLFYLMSRGLSEEEAKRLLIRGF 230

Length = 230

>gnl\|CDD\|233666 TIGR01981, sufD, FeS assembly protein SufD	Back alignment and domain information

>gnl\|CDD\|223791 COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|236804 PRK10948, PRK10948, cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

>gnl\|CDD\|131035 TIGR01980, sufB, FeS assembly protein SufB	Back alignment and domain information

>gnl\|CDD\|214359 CHL00085, ycf24, putative ABC transporter	Back alignment and domain information

>gnl\|CDD\|236990 PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		486
PRK10948		424	cysteine desulfurase activator complex subunit Suf	100.0
TIGR01980		448	sufB FeS assembly protein SufB. This protein, SufB	100.0
CHL00085		485	ycf24 putative ABC transporter	100.0
PRK11814		486	cysteine desulfurase activator complex subunit Suf	100.0
TIGR01981		366	sufD FeS assembly protein SufD, group 1. This prot	100.0
COG0719		412	SufB Cysteine desulfurase activator SufB [Posttran	100.0
PF01458		229	UPF0051: Uncharacterized protein family (UPF0051);	100.0
PF01458		229	UPF0051: Uncharacterized protein family (UPF0051);	98.45
CHL00085		485	ycf24 putative ABC transporter	97.82
PRK10948		424	cysteine desulfurase activator complex subunit Suf	97.78
PRK11814		486	cysteine desulfurase activator complex subunit Suf	97.74
TIGR01981		366	sufD FeS assembly protein SufD, group 1. This prot	97.73
TIGR01980		448	sufB FeS assembly protein SufB. This protein, SufB	97.67
COG0719		412	SufB Cysteine desulfurase activator SufB [Posttran	97.52
PF01774		209	UreD: UreD urease accessory protein; InterPro: IPR	82.06

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.3e-86  Score=697.40  Aligned_cols=390  Identities=25%  Similarity=0.346  Sum_probs=344.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCChhhhhccCCCCCC-CCCC---CCCCC-CCCCCCeEEEECcEEecccccCCCCC
Q 011429           75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS---SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP  149 (486)
Q Consensus        75 ~~R~~a~~~~~~~~~P~~k~E~WkyT~l~~l~~~~~~~~~-~~~~---~~~~~-~~~~~~~~vfvnG~~~~~ls~~~~lp  149 (486)
                      ++|++||+.|+++|||++|+|+|||||++.+....+.+.. ....   ...++ +.+.+ +++|+||.+.+.+|+.. +|
T Consensus        28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvfvnG~~~~~ls~~~-~~  105 (424)
T PRK10948         28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAV-RLVFVDGRFSPALSDST-EG  105 (424)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCce-EEEEECCEEchhhCccc-CC
Confidence            8999999999999999999999999999999876553211 1111   01122 22233 59999999999998843 33


Q ss_pred             CCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccc
Q 011429          150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP  229 (486)
Q Consensus       150 ~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~  229 (486)
                      + |.++++. +...     +..   ....++|++||+|++++|++||||+|+.+++||+|+++.++..+   ....+.++
T Consensus       106 ~-v~v~~~~-a~~~-----~~~---~~~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~---~~~~~~~~  172 (424)
T PRK10948        106 P-YQVSIND-DRQG-----LPA---AIQPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAG---EELNTAHY  172 (424)
T ss_pred             C-eEEEEch-hhhh-----ccc---cccccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCc---cccccccc
Confidence            4 7777754 3222     111   11247999999999999999999999999999999988655311   00125689


Q ss_pred             eEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEECC
Q 011429          230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG  309 (486)
Q Consensus       230 r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg  309 (486)
                      |++|++|+||+++|||+|.+.++ ..+|+|.++||++++||+|+|+++|.++.+++|+.+.++.++++|++++..+.+||
T Consensus       173 r~lI~~e~~a~~tiie~~~s~~~-~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~  251 (424)
T PRK10948        173 RHHLDLAEGAEATVIEHFVSLNE-ARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGA  251 (424)
T ss_pred             eEEEEECCCCEEEEEEEeecCCC-CceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCC
Confidence            99999999999999999998643 46799999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCccCccE
Q 011429          310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAG  389 (486)
Q Consensus       310 ~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~T~a~  389 (486)
                      +++|+++.+.|.|++|+++++|++++.++|++|+++.|.|.+|+|+|++++|||+. |+|++||+|+|+|.++||+|+|+
T Consensus       252 ~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~~~A~~t~a~  330 (424)
T PRK10948        252 AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVAQHAIKTDGQ  330 (424)
T ss_pred             ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEecCCcCcccE
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             EEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHH
Q 011429          390 QLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQ  469 (486)
Q Consensus       390 q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~  469 (486)
                      |.|++||||++|+++|+|+|||++|||+|+||||||+||||||||||||||++++|++|||+||+.|++++||++.+|++
T Consensus       331 q~~~~LLLs~~A~~~t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~~A~~Llv~gF~~evl~~i~~~~lr~~  410 (424)
T PRK10948        331 MTNNNLLLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAAELTEAIRDEALKQQ  410 (424)
T ss_pred             EeecEEEECCCcceEecceEEEecCCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 011429          470 VVSHVKNLMGTT  481 (486)
Q Consensus       470 l~~~i~~~l~~~  481 (486)
                      +.+.|++||.+.
T Consensus       411 l~~~i~~~l~~~  422 (424)
T PRK10948        411 VLARIGQRLPGG  422 (424)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999653

>TIGR01980 sufB FeS assembly protein SufB	Back alignment and domain information

>CHL00085 ycf24 putative ABC transporter	Back alignment and domain information

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

>TIGR01981 sufD FeS assembly protein SufD, group 1	Back alignment and domain information

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron	Back alignment and domain information

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron	Back alignment and domain information

>CHL00085 ycf24 putative ABC transporter	Back alignment and domain information

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional	Back alignment and domain information

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional	Back alignment and domain information

>TIGR01981 sufD FeS assembly protein SufD, group 1	Back alignment and domain information

>TIGR01980 sufB FeS assembly protein SufB	Back alignment and domain information

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		486
2zu0_A		423	Crystal Structure Of Sufc-Sufd Complex Involved In		3e-28
1vh4_A		435	Crystal Structure Of A Stabilizer Of Iron Transport		3e-28

>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 423

Back alignment and structure

Iteration: 1

Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 5/169 (2%) Query: 308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 365 GG + RHN Q G ++ ++S + V ++ D +R L+H +G+C RQLHK IV+ Sbjct: 249 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 306 Query: 366 HSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAIS 425 G+AVF+G + V ++A +TD +LL+ A V+ KP L+I ADDVKCSHGA + Sbjct: 307 DK-GRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVG 365 Query: 426 DLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHV 474 +++ Q+FY ++RGI+ + A++ ++++F AE+ E ++ QV++ + Sbjct: 366 RIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARI 414

PyMOL of 2zu0

>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter Length = 435

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		486
1vh4_A		435	SUFD protein; structural genomics, protein binding	1e-122
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	6e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Length = 435	Back alignment and structure

 Score =  364 bits (935), Expect = e-122
 Identities = 103/429 (24%), Positives = 191/429 (44%), Gaps = 26/429 (6%)

Query: 59  SLPSSSSSLPQ--------PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
            LP+SS++L Q                    Q LL T  P+RK E +++T    + +SQ 
Sbjct: 5   GLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQF 64

Query: 111 QPITRPSSSLDVST---DAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKR 167
             I    S               LV +DG    +   LS+  +G      +         
Sbjct: 65  VSIAGEISPQQRDALALTLDSVRLVFVDGRYVPA---LSDATEGSGYEVSI-------ND 114

Query: 168 VSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPIS 227
               + +    ++F  +    A  +  I V  G +   P+ L +++     V  +++  +
Sbjct: 115 DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQ---GVAGEEVNTA 171

Query: 228 NPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI 287
           + R  + + EG E  +IE FV    +  ++  +   + +     ++H  L  ++  + H 
Sbjct: 172 HYRHHLDLAEGAEATVIEHFVS-LNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHF 230

Query: 288 KWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRL 347
               +     +         GG + RHN   Q  G ++   ++S  + V ++  D  + L
Sbjct: 231 AHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWL 290

Query: 348 LLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKP 407
             +      RQLHK IV+   G+AVF+G + V ++A +TD      +LL+   A V+ KP
Sbjct: 291 EHNKGFCNSRQLHKTIVSDK-GRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKP 349

Query: 408 NLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIR 467
            L+I ADDVKCSHGA +  +++ Q+FY ++RGI+ + A++ ++++F AE+ E      ++
Sbjct: 350 QLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLK 409

Query: 468 NQVVSHVKN 476
            QV++ +  
Sbjct: 410 QQVLARIGQ 418

PyMOL of 1vh4

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Length = 429	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		486
1vh4_A		435	SUFD protein; structural genomics, protein binding	100.0
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	100.0
1vh4_A		435	SUFD protein; structural genomics, protein binding	98.12
4dn7_A		429	ABC transporter, ATP-binding protein; structural g	98.07

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*	Back alignment and structure

Probab=100.00  E-value=4e-87  Score=704.77  Aligned_cols=394  Identities=25%  Similarity=0.349  Sum_probs=352.5

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhhhhccCCCCCCCCCC-----CCCCCCCCCCCeEEEECcEEecccccC
Q 011429           71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL  145 (486)
Q Consensus        71 ~~l~~~R~~a~~~~~~~~~P~~k~E~WkyT~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~vfvnG~~~~~ls~~  145 (486)
                      .||.++|++||+.|+++|||++|.|+||||||+.+....+.+......     ...++ .+.. +++|+||.+.+.+++.
T Consensus        25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~~  102 (435)
T 1vh4_A           25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSDA  102 (435)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSCC
T ss_pred             chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeecccc
Confidence            579999999999999999999999999999999998877644321111     01122 2333 4899999999887652


Q ss_pred             CCCCCCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCc
Q 011429          146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP  225 (486)
Q Consensus       146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~  225 (486)
                       .+|+||+++++.+      ++|+....  . .|+|++||+|++++|+|||||+|+++++||+++|+.++.+..   ...
T Consensus       103 -~~~~Gv~~~~~~~------~~~~~~~~--~-~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~~---~~~  169 (435)
T 1vh4_A          103 -TEGSGYEVSINDD------RQGLPDAI--Q-AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGE---EVN  169 (435)
T ss_dssp             -CTTSSCEEEEESC------CTTCCCCS--S-CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSS---CEE
T ss_pred             -ccCCCeEEEecch------hhhhhccc--C-chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCccc---ccc
Confidence             3689999999976      34554322  2 399999999999999999999999999999998775432100   003


Q ss_pred             cccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEE
Q 011429          226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV  305 (486)
Q Consensus       226 ~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v  305 (486)
                      .+++|++|++|+||+++|||+|.++.. ..+++++++||++++||+|+|+.+|+|+.+++++..+++.++++|+++|+.+
T Consensus       170 ~~~~r~lIi~eegs~v~iie~~~~~~~-~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (435)
T 1vh4_A          170 TAHYRHHLDLAEGAEATVIEHFVSLND-ARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSF  248 (435)
T ss_dssp             EEEEEEEEEECTTCEEEEEEEEEESSS-SCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred             eeeeEEEEEECCCCEEEEEEEeccCCc-ccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEE
Confidence            579999999999999999999998743 4689999999999999999999999999999999999999999999999999


Q ss_pred             EECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCcc
Q 011429          306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQ  385 (486)
Q Consensus       306 ~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~  385 (486)
                      .+||+++|+++.+.|.|+||.++++|++++.++|++|+++.++|.+|+|+|++++|||+. |+|+++|+|+|+|.++|++
T Consensus       249 ~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~~A~~  327 (435)
T 1vh4_A          249 LLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQHAIK  327 (435)
T ss_dssp             ECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECTTCTT
T ss_pred             EECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEecCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             CccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChh
Q 011429          386 TDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPS  465 (486)
Q Consensus       386 T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~  465 (486)
                      |+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||+.+++++||++.
T Consensus       328 t~a~~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~eA~~Liv~gF~~~vi~~i~~e~  407 (435)
T 1vh4_A          328 TDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEG  407 (435)
T ss_dssp             EEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CeeEEEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 011429          466 IRNQVVSHVKNLMGTT  481 (486)
Q Consensus       466 lr~~l~~~i~~~l~~~  481 (486)
                      +|+++.+.|+.+|+..
T Consensus       408 l~~~l~~~i~~~l~~~  423 (435)
T 1vh4_A          408 LKQQVLARIGQRLPGG  423 (435)
T ss_dssp             HHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999999753

PyMOL of 1vh4

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}	Back alignment and structure

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*	Back alignment and structure

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		486
d1vh4a_		413	b.80.6.1 (A:) Stabilizer of iron transporter SufD	3e-51

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Length = 413	Back information, alignment and structure


class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

 Score =  177 bits (449), Expect = 3e-51
 Identities = 99/401 (24%), Positives = 186/401 (46%), Gaps = 20/401 (4%)

Query: 82  QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLD---VSTDAQFPSLVLIDGFI 138
           Q LL T  P+RK E +++T    + +SQ   I    S      ++       LV +DG  
Sbjct: 26  QQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRY 85

Query: 139 QNSALNLSNLPDGVYVG-SLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYV 197
             +   LS+  +G     S+     G+   +   +        F  +    A  +  I V
Sbjct: 86  VPA---LSDATEGSGYEVSINDDRQGLPDAIQAEV--------FLHLTESLAQSVTHIAV 134

Query: 198 PAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYW 257
             G +   P+ L +++     V  +++  ++ R  + + EG E  +IE FV    +  ++
Sbjct: 135 KRGQRPAKPLLLMHIT---QGVAGEEVNTAHYRHHLDLAEGAEATVIEHFV-SLNDARHF 190

Query: 258 ANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVH 317
             +   + +     ++H  L  ++  + H     +     +         GG + RHN  
Sbjct: 191 TGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTS 250

Query: 318 VQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNV 377
            Q  G ++   ++S  + V ++  D  + L  +      RQLHK IV+   G+AVF+G +
Sbjct: 251 TQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDK-GRAVFNGLI 309

Query: 378 KVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQA 437
            V ++A +TD      +LL+   A V+ KP L+I ADDVKCSHGA +  +++ Q+FY ++
Sbjct: 310 NVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRS 369

Query: 438 RGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM 478
           RGI+ + A++ ++++F AE+ E      ++ QV++ +   +
Sbjct: 370 RGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRL 410

PyMOL of d1vh4a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		486
d1vh4a_		413	Stabilizer of iron transporter SufD {Escherichia c	100.0
d1vh4a_		413	Stabilizer of iron transporter SufD {Escherichia c	97.95

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-84  Score=675.10  Aligned_cols=394  Identities=24%  Similarity=0.345  Sum_probs=348.3

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhhhhccCCCCCCCCCCC----CCCCCCCCCCeEEEECcEEecccccCC
Q 011429           71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSS----LDVSTDAQFPSLVLIDGFIQNSALNLS  146 (486)
Q Consensus        71 ~~l~~~R~~a~~~~~~~~~P~~k~E~WkyT~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~vfvnG~~~~~ls~~~  146 (486)
                      .+..+.|+++|+.|.++|||++|+|.||||+|+.|....+.+.....+.    ......+.. ++||+||++.+.+|+..
T Consensus        15 ~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivfvnG~~~~~ls~~~   93 (413)
T d1vh4a_          15 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSV-RLVFVDGRYVPALSDAT   93 (413)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSE-EEEEETTEECGGGSCCC
T ss_pred             CcchHHHHHHHHHHHHcCCCCCCCcCccCCCHHHHhccCCcccCCccCchhhcccccccCce-EEEEECCEEchhcccCc
Confidence            3566779999999999999999999999999999988776443322210    001112333 49999999999887643


Q ss_pred             CCCCCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCcc
Q 011429          147 NLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPI  226 (486)
Q Consensus       147 ~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~  226 (486)
                       .+.|+.+....+...        . ......++|.+||.|++++|++|+||+|+++++||+|+|+.++..+   ....+
T Consensus        94 -~~~~i~i~~~~~~~~--------~-~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~---~~~~~  160 (413)
T d1vh4a_          94 -EGSGYEVSINDDRQG--------L-PDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAG---EEVNT  160 (413)
T ss_dssp             -TTSSCEEEEESCCTT--------C-CCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSS---SCEEE
T ss_pred             -ccCCeEEechHhhhh--------c-ccchhhhhhhhhhhhccccceeEeeccceEecccceeeEeeccccc---ccccc
Confidence             367887765554321        0 1111378999999999999999999999999999999988654321   11236


Q ss_pred             ccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEE
Q 011429          227 SNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVS  306 (486)
Q Consensus       227 ~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~  306 (486)
                      .+||++|++++||+++|+|.|.+.+. ..+|+|.++||++++||+|+|+.+|+++.++.++..+++.++++|.|.++.+.
T Consensus       161 ~~~r~~I~v~ena~v~iiE~~~~~~~-~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~  239 (413)
T d1vh4a_         161 AHYRHHLDLAEGAEATVIEHFVSLND-ARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFL  239 (413)
T ss_dssp             EEEEEEEEECTTCEEEEEEEEEESSS-SCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEE
T ss_pred             cceeeeeeecccchhhhhhhcccccc-ccceecceeEEEecccceeeehhhhhhcccccccceeeeecccccceeeeecc
Confidence            78999999999999999999998653 47899999999999999999999999999999999999999999999999999


Q ss_pred             ECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCccC
Q 011429          307 TGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQT  386 (486)
Q Consensus       307 ~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~T  386 (486)
                      +||.++|+++++.|.|+||.+.++|++++.++|++|+++.+.|.+|+|+|+|++|||+. |+|++||+|+|+|.++|++|
T Consensus       240 ~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~-d~s~~vf~G~i~V~~~A~~t  318 (413)
T d1vh4a_         240 LGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQHAIKT  318 (413)
T ss_dssp             CCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECTTCTTE
T ss_pred             cccchhhccchhhccccccccceeeccccccchhhhhhhhhhccccccchhhhhhcccc-ccceeEEeeeecccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             ccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhH
Q 011429          387 DAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSI  466 (486)
Q Consensus       387 ~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~l  466 (486)
                      +|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||+.|++++||++.+
T Consensus       319 ~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~  398 (413)
T d1vh4a_         319 DGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGL  398 (413)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             hhHHhhhhhcccCCceEEecceEEEecCCeeEEeeeeccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 011429          467 RNQVVSHVKNLMGT  480 (486)
Q Consensus       467 r~~l~~~i~~~l~~  480 (486)
                      |+++.+.|++||..
T Consensus       399 ~~~~~~~i~~~l~~  412 (413)
T d1vh4a_         399 KQQVLARIGQRLPG  412 (413)
T ss_dssp             HHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999864

PyMOL of d1vh4a_

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure