Citrus Sinensis ID: 011435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
Protein Sequence
MKGTHLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYGDDSYRF
Secondary Structure (PSIPRED)
ccccEEEHHHHHHHHHHHcccccccccccEEEccccEEEEEcccccEEEcccccEEEEEcccEEEEEEccccccccccEEEEcccccEEEEEccccEEEEEcccccccccEEEEEEccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEEEEEcEEEEEEEcccccEEEcccccccEEccccccEEEEcccccccccccccccccccccccccHHcccccEEEEEcccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEccccccccEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHccccHcccccccEEEccccEEEEEccccEEEEEccccEEEEEcccccccccccccccccccEEEEcccccEEEEEccccEEEEEccccccccEEEEEEEccccccccccccccHcEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEccccccccccccHHHHcccccccEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHcHccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEEcccccccccccccccccEEEEcccccccccEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKGTHLLLTLTLLIAFTLQfqahaapagplIKHLTSLLKWttrssskapqadgnvlqfENGYLVETVIegneigvvpykirvsedgelfavdevnsnivkitpplsqysrgrlvagsfqgytghvdgkpnearfnhpkgvtmddkgnlyVADTLNLAIRKIGdagvttiaggksnvagfrdgpsedakfsndfdvvyvrptcsLLVIDRGNAALRQISlnqddceyqynsisptdILMVVGAVLVGYVTCMLqqgfgpfffsrtqqpsesefneETEIKelsnkekpipivesmkeepgwpsfgQLIIDLSKLALEAMGSMFlnfvpfrfrssgtkgnltplrdtlrmpedeaappvvqrqksavplsethqvrtpgtgdkypdmkppkiksasfkdsslstkhrsSKRQEYAEfygsgevpppysksksqkertrhrqrdksgelvygvsgmepkpvemkpvdydnlkfdhynmrskygddsyrf
Flexible Loop (DISEMBL)
MKGTHLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRssskapqadgnvlQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKitpplsqysrgRLVAGSFQGytghvdgkpnearfNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNeeteikelsnkekpiPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPpvvqrqksavplsethqvrtpgtgdkypdmkppkiksasfkdsslstkhrsskRQEYAefygsgevpppysksksqkertrhrqrdksgelvygvsgmepkpvemkpvdydnlkfdhynmrskygddsyrf
Low Complexity Region (SEG)
MKGthllltltlliaftlQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYGDDSYRF
Disordered region (IsUnstruct)
****HLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTT**********GNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVD************GVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGF********KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFS************************************GWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFR***********************************************************************************************************************************************************
Disordered Region (DISOPRED)
***THLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPS**********************************FGQLIIDLSKLALEAMGSMFLNFV*******************LRMPEDEAA******************************************************************************************ELVYGVSGMEP*PVEMKPVDYDNLKFDHYNMRSKY*******
Disordered Region (DISEMBL)
MKGTHLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWT********QADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRT****************LSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDE****************************KYPDMKPPKIKS*******************YAEFYGSG************************GELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYGDDSYRF
Disordered Region (DISPRO)
*KGTHLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSR**********************KPIPIVES*KEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRS**TKGNLTPLRDTLRMPEDEAAPPVV************************************************************************************SGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYGDDSYRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGTHLLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYGDDSYRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	486	2.2.26 [Sep-21-2011]
Q5ZI67	727	NHL repeat-containing pro	yes	no	0.240	0.160	0.309	0.0008

>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 75  VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF 134
           + P K+ V + GE   + +   + + +T        G+++       +G  DG+ +EA F
Sbjct: 219 LFPGKVTVDKSGERLVIADTGHHRILVT-----LKNGQILHTIGGPNSGRKDGRFSEAAF 273

Query: 135 NHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG-GKSNVAGFRDGPSEDAKFSN 191
           N P+GV + +   +YVADT N  IRKI      VTT+AG G   V        E+   S+
Sbjct: 274 NSPQGVAIKNN-VIYVADTENHLIRKIDLELEIVTTVAGIGIQGVDKEGGAKGEEQPISS 332

Query: 192 DFDVVY 197
            +DVV+
Sbjct: 333 PWDVVF 338

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
255567088	484	conserved hypothetical protein [Ricinus	0.985	0.989	0.761	0.0
356549639	487	PREDICTED: uncharacterized protein LOC10	0.973	0.971	0.723	0.0
225461726	484	PREDICTED: uncharacterized protein LOC10	0.979	0.983	0.727	0.0
357452081	493	hypothetical protein MTR_2g075860 [Medic	0.973	0.959	0.682	0.0
224117004	460	predicted protein [Populus trichocarpa]	0.936	0.989	0.688	0.0
449438911	480	PREDICTED: uncharacterized protein LOC10	0.950	0.962	0.666	0.0
224117390	495	predicted protein [Populus trichocarpa]	0.948	0.931	0.65	0.0
42572439	493	NHL domain-containing protein [Arabidops	0.942	0.929	0.663	1e-173
297834352	489	NHL repeat-containing protein [Arabidops	0.942	0.936	0.663	1e-173
22331093	492	NHL domain-containing protein [Arabidops	0.940	0.928	0.661	1e-171

>gi|255567088|ref|XP_002524526.1| conserved hypothetical protein [Ricinus communis] gi|223536200|gb|EEF37853.1| conserved hypothetical protein [Ricinus communis]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/491 (76%), Positives = 410/491 (83%), Gaps = 12/491 (2%)

Query: 1   MKGTHLL----LTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVL 56
           M+ +HL     L LTL +AF LQFQAHAAPAGPLIKH +S LKWT RSSSK PQ+DGNVL
Sbjct: 1   MRRSHLFYFAPLLLTLFLAFNLQFQAHAAPAGPLIKHFSSFLKWTARSSSKTPQSDGNVL 60

Query: 57  QFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAG 116
           QFE+GYLVETV+EGNEIGVVPYKIRVSEDGEL+AVDEVNSNIVKITPPLSQYSR RLVAG
Sbjct: 61  QFEDGYLVETVVEGNEIGVVPYKIRVSEDGELYAVDEVNSNIVKITPPLSQYSRARLVAG 120

Query: 117 SFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNV 176
           SFQGY GHVDGK NEARFNHPKG+TMDDKGN+YVADTLNLAIRKIGDAGVTTIAGGKSN 
Sbjct: 121 SFQGYKGHVDGKSNEARFNHPKGITMDDKGNVYVADTLNLAIRKIGDAGVTTIAGGKSNT 180

Query: 177 AGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDI 236
           AG+RDGPSEDAKFS DFDVVYV  TCSLLV+DRGN ALRQISLNQ+DC+YQ +SI+ TD+
Sbjct: 181 AGYRDGPSEDAKFSTDFDVVYVHSTCSLLVVDRGNVALRQISLNQEDCDYQSSSITVTDL 240

Query: 237 LMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKE 296
           LMVVGAV  GYVTCMLQQGFGP FFS+TQ  SES      EI E  + EKP PI  SMKE
Sbjct: 241 LMVVGAVFTGYVTCMLQQGFGPSFFSKTQHFSES------EILEHQSMEKPTPITGSMKE 294

Query: 297 EPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPP 356
           EP WPSFGQL+IDLSKL LEA+  MFL  +P   RS+G++  LTPL+DTLRMPEDE  PP
Sbjct: 295 EPRWPSFGQLMIDLSKLTLEALADMFLYLIPSWLRSNGSRKGLTPLKDTLRMPEDEVEPP 354

Query: 357 VVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFY 416
            V RQ  +VPLSET QV  P   DKY +MKPPKIKSASFKD SLS+KHRSSKRQEYAEFY
Sbjct: 355 SVHRQSISVPLSETRQVHNPNASDKYSEMKPPKIKSASFKDPSLSSKHRSSKRQEYAEFY 414

Query: 417 GSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMR 476
           GSGE+P    +SKS KE+TRHRQRDKSGE+    +G EPKPV MK VDYDN KFDHYNMR
Sbjct: 415 GSGEMPSS-GRSKSHKEKTRHRQRDKSGEVAPAATGAEPKPVNMKHVDYDNPKFDHYNMR 473

Query: 477 SKYGD-DSYRF 486
           SKYG  +SY+F
Sbjct: 474 SKYGSGNSYQF 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549639|ref|XP_003543199.1| PREDICTED: uncharacterized protein LOC100797841 [Glycine max]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/485 (72%), Positives = 412/485 (84%), Gaps = 12/485 (2%)

Query: 6   LLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVE 65
           L + + L   F+L  Q+HAAPAGPLIKH++SL+KWT RS+SK P +DGNVLQFENGY+VE
Sbjct: 8   LFVLIALAPTFSLHLQSHAAPAGPLIKHISSLIKWT-RSTSKTPHSDGNVLQFENGYVVE 66

Query: 66  TVIEGNEIGVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGH 124
           TV+EGNEIGVVPY+IRVSE DGELFAVD +NSNIV+ITPPLSQYSRGRLVAGSFQGYTGH
Sbjct: 67  TVVEGNEIGVVPYRIRVSEEDGELFAVDAINSNIVRITPPLSQYSRGRLVAGSFQGYTGH 126

Query: 125 VDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPS 184
           VDGKP++ARFNHPKG+T+DDKGN+YVADT NLAIRKIGDAGVTTIAGGKSNVAG+RDGPS
Sbjct: 127 VDGKPSDARFNHPKGITVDDKGNVYVADTQNLAIRKIGDAGVTTIAGGKSNVAGYRDGPS 186

Query: 185 EDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVL 244
           EDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL+Q+DC+YQ NSIS TDIL VVGAV+
Sbjct: 187 EDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLDQEDCDYQSNSISSTDILTVVGAVI 246

Query: 245 VGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFG 304
           VGY TCMLQQGFG  FFS+TQQPS+ +F      K L++ EK +PI+ES KEEPGWPSFG
Sbjct: 247 VGYATCMLQQGFGSSFFSKTQQPSQKQF------KGLASNEKHMPILESSKEEPGWPSFG 300

Query: 305 QLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSA 364
           QLI+DLSKL+LEA+ S F+ F+P  FR S +K  LTPL+D L MPED+  PP+V RQ + 
Sbjct: 301 QLIVDLSKLSLEALASTFIQFIPSHFRPSNSKRGLTPLKDRLVMPEDDVPPPLVNRQNAQ 360

Query: 365 --VPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVP 422
              PL+E   V TP   +KY +MKPPKIKS+SFKD S+S+KHRSS+R EYAEFYGS E+ 
Sbjct: 361 GHTPLTENRMVHTPTIAEKYSEMKPPKIKSSSFKDPSMSSKHRSSRRPEYAEFYGSSEI- 419

Query: 423 PPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYG-D 481
           PPY+KSKSQKER RHRQR+KSGE+V G  G E KPVE + VD++N KFDHY+MR+KY  +
Sbjct: 420 PPYTKSKSQKERPRHRQREKSGEVVMGAVGAEAKPVETRAVDHNNPKFDHYSMRTKYASE 479

Query: 482 DSYRF 486
           +++RF
Sbjct: 480 ETFRF 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461726|ref|XP_002285515.1| PREDICTED: uncharacterized protein LOC100245328 [Vitis vinifera] gi|302142876|emb|CBI20171.3| unnamed protein product [Vitis vinifera]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/491 (72%), Positives = 414/491 (84%), Gaps = 15/491 (3%)

Query: 2   KGTHLLLTLTLLIAFTLQFQAHAAPA-GPLIKHLTSLLKWTTRSSSKAPQADGNVLQFEN 60
           K    L+ LTL+  F+LQF+A AAP  GP ++H +SLLKWT RSSSKAP +DG+VLQFE+
Sbjct: 3   KSLLFLIILTLVFTFSLQFRAQAAPPLGPFVRHFSSLLKWT-RSSSKAPHSDGHVLQFED 61

Query: 61  GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQG 120
           GYLVETV+EGNE+GVVP+ IRVSEDGELFAVD V +NIV+ITPPLSQYSR RLVAGSFQG
Sbjct: 62  GYLVETVVEGNELGVVPHSIRVSEDGELFAVDAVKNNIVRITPPLSQYSRARLVAGSFQG 121

Query: 121 YTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFR 180
           +TGHVDGKP++ARFN PKGVTMDDKGN+YVADT NLAIRKIGD+GVTTIAGGKSNVAG+R
Sbjct: 122 HTGHVDGKPSDARFNGPKGVTMDDKGNVYVADTSNLAIRKIGDSGVTTIAGGKSNVAGYR 181

Query: 181 DGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVV 240
           DGPSEDAKFS+DFDVVYVRPTCSLLV+DRGNAALRQISLNQ+DC+YQ +SIS TDI MV+
Sbjct: 182 DGPSEDAKFSSDFDVVYVRPTCSLLVVDRGNAALRQISLNQEDCDYQNSSISATDIFMVI 241

Query: 241 GAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEP-- 298
           GAV+VGY +C+LQ+GFGP  FS+TQ  SESEF ++        KEKP PIVES+KEEP  
Sbjct: 242 GAVMVGYASCLLQKGFGPSAFSKTQH-SESEFEDQL------IKEKPTPIVESIKEEPDA 294

Query: 299 GWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVV 358
           GWPSFGQLIIDLSK  LEA+  +FL F+P RF  +  +  LTPL+D L MPEDEA PP+ 
Sbjct: 295 GWPSFGQLIIDLSKFTLEALTGIFLYFIPSRFMPTRARKGLTPLKDHLIMPEDEADPPLA 354

Query: 359 QRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGS 418
           Q+Q++  PLSET Q  TP T +KY +MKPPKIKS SFKD SLS+KHRSSKRQEYAEFY S
Sbjct: 355 QKQRAPPPLSETRQAHTPNTSEKYSEMKPPKIKSYSFKDPSLSSKHRSSKRQEYAEFYHS 414

Query: 419 GEVPPPYS--KSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMR 476
           GEVPPPY+  +SKSQKER+RHRQRDKSGE+ +G  G E KPVE+K VDYD+ KFDHYN+R
Sbjct: 415 GEVPPPYTQVRSKSQKERSRHRQRDKSGEM-FGAVGAESKPVEIKAVDYDDPKFDHYNIR 473

Query: 477 SKYG-DDSYRF 486
           SKYG DDS+RF
Sbjct: 474 SKYGSDDSFRF 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452081|ref|XP_003596317.1| hypothetical protein MTR_2g075860 [Medicago truncatula] gi|355485365|gb|AES66568.1| hypothetical protein MTR_2g075860 [Medicago truncatula]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/494 (68%), Positives = 397/494 (80%), Gaps = 21/494 (4%)

Query: 4   THLLLTLTLLI---AFTLQFQ-AHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFE 59
           TH LL  TL++    F+L FQ  HAAPAGPLIKHL+SL+KWT  +++K P +DGNVLQFE
Sbjct: 7   THSLLFYTLIVLVSIFSLHFQPTHAAPAGPLIKHLSSLIKWTRSATTKTPHSDGNVLQFE 66

Query: 60  NGYLVETVIEGNEIGVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSF 118
           NGY+VETV+EGNEIGV+PY+IRVSE DGELFAVDE+NSNIV+ITPPLSQYSRGRLVAGSF
Sbjct: 67  NGYVVETVVEGNEIGVIPYRIRVSEEDGELFAVDEINSNIVRITPPLSQYSRGRLVAGSF 126

Query: 119 QGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAG 178
           QGYT HVDGKP++ARFNHPKG+TMDDKGN+YVADT NLAIRKIGDAGVTTIAGGKSNVAG
Sbjct: 127 QGYTDHVDGKPSDARFNHPKGITMDDKGNVYVADTQNLAIRKIGDAGVTTIAGGKSNVAG 186

Query: 179 FRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILM 238
           +RDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR+I L+Q+DC+YQ +SIS TDIL+
Sbjct: 187 YRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRKIILDQEDCDYQSSSISSTDILI 246

Query: 239 VVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEP 298
           VVGAVLVGY TCMLQQGFG  FFS+T+   +       E K   + +K +PI ES KE+P
Sbjct: 247 VVGAVLVGYATCMLQQGFGSSFFSKTRSSGQ-------EFKGRESNDKRMPIPESSKEDP 299

Query: 299 GWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVV 358
           GWPSFGQLI DLSKL+LEA+ S F  F+P  F+ +  K  LTPL+D L MPEDE  PP+V
Sbjct: 300 GWPSFGQLIADLSKLSLEALASAFTQFMPSHFKFNSRKTGLTPLKDRLVMPEDEVQPPLV 359

Query: 359 QRQKSAVPLSETH---QVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEF 415
           +R+ + V ++E     QV T    +KY + KPPK+KS+SFKD S   KHRSSKR EYAEF
Sbjct: 360 KRKTTPVTVTENRQMPQVHTATITEKYSEAKPPKVKSSSFKDPS---KHRSSKRSEYAEF 416

Query: 416 YGSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMK-PVDYDNLKFDHYN 474
           YGSGEVP  Y+KSKSQKER RHR R+KSGE+V+  +G E KPVE +  VD+ N KFD Y+
Sbjct: 417 YGSGEVPSSYAKSKSQKERPRHRHREKSGEVVFPTNGAEAKPVEPRAAVDHSNSKFDRYS 476

Query: 475 MRSK--YGDDSYRF 486
           MR+      +S+RF
Sbjct: 477 MRTGGYVPGESFRF 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117004|ref|XP_002317450.1| predicted protein [Populus trichocarpa] gi|222860515|gb|EEE98062.1| predicted protein [Populus trichocarpa]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/491 (68%), Positives = 388/491 (79%), Gaps = 36/491 (7%)

Query: 1   MKGTHLLLTLTLLI---AFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQ 57
           M+ +H   TL L +   A T QFQAHAAP                         D NVLQ
Sbjct: 1   MRRSHFSYTLVLAVLSLACTFQFQAHAAPP------------------------DENVLQ 36

Query: 58  FENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGS 117
           FE+GYLVETV++GN +GVVPYKIR+SEDGEL+AVDEVNSN+VKITPPLSQYSR RLVAGS
Sbjct: 37  FEDGYLVETVVKGNAMGVVPYKIRLSEDGELYAVDEVNSNVVKITPPLSQYSRARLVAGS 96

Query: 118 FQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVA 177
           FQGYTGH+DGKPNE RFNHP+G+TMDDKGN+YVAD+LN AIRKIGDAGVTTIAGGKSNVA
Sbjct: 97  FQGYTGHIDGKPNEVRFNHPRGLTMDDKGNIYVADSLNHAIRKIGDAGVTTIAGGKSNVA 156

Query: 178 GFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPT-DI 236
           GFRDGPSEDAKFSNDFDVVYV  TCSLLV+DRGNAALRQISLNQ+DC+YQ +S + T D+
Sbjct: 157 GFRDGPSEDAKFSNDFDVVYVHSTCSLLVVDRGNAALRQISLNQEDCDYQSSSFTMTEDV 216

Query: 237 LMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKE 296
           LMVVGAVL+GY TCMLQ GFG    SR QQ SESE+      KE S+KEKPIPIV++MKE
Sbjct: 217 LMVVGAVLIGYATCMLQLGFGSSSSSRMQQSSESEY------KEKSSKEKPIPIVDNMKE 270

Query: 297 EPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPP 356
           EP WPSFGQL IDLSKLALEA+  + L+FVP  ++  G +  LTPL+D+L MP+DE  PP
Sbjct: 271 EPKWPSFGQLFIDLSKLALEALVGILLSFVPSWYKPGGARKGLTPLKDSLIMPDDEVEPP 330

Query: 357 VVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFY 416
            VQRQ +  P+SE  QV+TP T DKY +MK PKIKSASFKD S  +KHRSSK+QEYAEFY
Sbjct: 331 SVQRQSTPAPVSENRQVQTPTTSDKYSEMKLPKIKSASFKDPSPLSKHRSSKQQEYAEFY 390

Query: 417 GSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMR 476
           GSGEV P + +SKS KE++RHRQRDKSGE+V+G  G EPKP EM PVDY++ KF+HYN R
Sbjct: 391 GSGEV-PSHGRSKSHKEKSRHRQRDKSGEVVFGAVGAEPKPAEMNPVDYNSPKFNHYNNR 449

Query: 477 SKYGDDS-YRF 486
           SKYG DS YRF
Sbjct: 450 SKYGSDSLYRF 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438911|ref|XP_004137231.1| PREDICTED: uncharacterized protein LOC101210502 [Cucumis sativus]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/480 (66%), Positives = 390/480 (81%), Gaps = 18/480 (3%)

Query: 6   LLLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSK---APQADGNVLQFENGY 62
            ++++  ++  TLQ Q +A PAGPLIKHL+S +KWT RSS K   AP +DGNVLQFENGY
Sbjct: 7   FVISIIFVLFLTLQIQVNATPAGPLIKHLSSFVKWT-RSSYKSLPAPPSDGNVLQFENGY 65

Query: 63  LVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYT 122
           LV TV+EGNEIGV+P+KI VS+DGELF VD VNSNIVKITPPLS+Y+R RLVAGSFQ +T
Sbjct: 66  LVGTVVEGNEIGVLPHKIHVSKDGELFVVDSVNSNIVKITPPLSKYTRARLVAGSFQSHT 125

Query: 123 GHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDG 182
           GH+DGKPN+ARFNHP+GVT+DDKGN+YVADTLNLAIRKIGDAGVTTIAGGKSNV G+RDG
Sbjct: 126 GHIDGKPNDARFNHPRGVTVDDKGNVYVADTLNLAIRKIGDAGVTTIAGGKSNVVGYRDG 185

Query: 183 PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGA 242
           P EDAKFSNDFDV+YVR TCSLLVIDRGNAA+RQISLNQ+DCEYQ +SIS +D+LM++GA
Sbjct: 186 PGEDAKFSNDFDVMYVRSTCSLLVIDRGNAAIRQISLNQEDCEYQDSSISNSDVLMIIGA 245

Query: 243 VLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPS 302
           VL GY T M+Q+GFG    S+T  P E+E+ E+    E S+      +++S+KE+PGWPS
Sbjct: 246 VLAGYATYMIQRGFGTSNVSQTNPPLETEYREKPYKPESSS------VMDSVKEDPGWPS 299

Query: 303 FGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQR-Q 361
           FG+LIIDLSKLALEA+ S+FL+ VP RFR+  T+  LTPL+D+LRMPEDE   P VQ  Q
Sbjct: 300 FGRLIIDLSKLALEAVASIFLSVVPARFRARNTRKGLTPLKDSLRMPEDEPEQPTVQMLQ 359

Query: 362 KSAVPLSETHQVRTPGTGDKYPD-MKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGE 420
           ++ VPL+ET Q       D +P+ MKP K+ S+SFKD SL +KHRSSKRQE+A+FY SGE
Sbjct: 360 RTPVPLTETRQAHV-NARDPFPELMKPSKLNSSSFKDPSLQSKHRSSKRQEHADFYRSGE 418

Query: 421 VPPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPVEMKPVDYDNLKFDHYNMRSKYG 480
           +PPPYS+SKSQKER RHRQR+KS E+ YG  G      E+KP DYDN K++HYN+R+KYG
Sbjct: 419 IPPPYSRSKSQKERPRHRQREKSAEISYGAVGS-----ELKPADYDNPKYEHYNIRNKYG 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117390|ref|XP_002331700.1| predicted protein [Populus trichocarpa] gi|222874306|gb|EEF11437.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/520 (65%), Positives = 389/520 (74%), Gaps = 59/520 (11%)

Query: 1   MKGTHL----LLTLTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTR-SSSKAPQADGNV 55
           M+ +H     +L L L +A T QFQAHAAP  PLIKHL+SLLKWTT  +SSK P +DGNV
Sbjct: 1   MRRSHFYSTFILALLLSVACTFQFQAHAAPPAPLIKHLSSLLKWTTTVASSKTPHSDGNV 60

Query: 56  LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVA 115
           LQFE+GYLVETV+EGN +GVVPYKIRVSEDGEL+AVDEVNSN+VKITPPLSQYSR RL A
Sbjct: 61  LQFEDGYLVETVVEGNAMGVVPYKIRVSEDGELYAVDEVNSNVVKITPPLSQYSRARLAA 120

Query: 116 GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSN 175
           GSFQGYTGH+DGKPNEARFNHP+G+TMDDKGN+YVADTLNLAIRKIGDAGVTTIAGGKSN
Sbjct: 121 GSFQGYTGHIDGKPNEARFNHPRGLTMDDKGNIYVADTLNLAIRKIGDAGVTTIAGGKSN 180

Query: 176 VAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTD 235
           VAGFRDGPSEDAKFSNDFDVVY+  TCSLLV+DRGNAALRQISLNQ+DC+YQ      T 
Sbjct: 181 VAGFRDGPSEDAKFSNDFDVVYLHSTCSLLVVDRGNAALRQISLNQEDCDYQSKCTRKTT 240

Query: 236 I-------------------LMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEET 276
           I                   +MVVGAVL+GY TCMLQQGFG  FFSR +Q      + ++
Sbjct: 241 IESTRLVSKTRCWGVLFDYVIMVVGAVLIGYATCMLQQGFGSSFFSRMKQ------SSDS 294

Query: 277 EIKELSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTK 336
           E K+ S+KEKPIPI+E+MKEEP WPSFGQL+IDLSKLALEA+  + L FVP   R    +
Sbjct: 295 EFKKKSSKEKPIPIMENMKEEPKWPSFGQLLIDLSKLALEALVGILLCFVPSWNRPGEAR 354

Query: 337 GNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMKPPKIKSASFK 396
             LTPL+D+L +PED+  PP VQRQ +  P+SE+ QV TP T DKY + KPPKIKSASFK
Sbjct: 355 TGLTPLKDSLTLPEDKVEPPSVQRQSTPAPVSESRQVHTPTTSDKYLEGKPPKIKSASFK 414

Query: 397 DSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKERTRHRQRDKSGELVYGVSGM--- 453
           D SL +KH SSKRQEYA FYGSGEVP                     GE   G++ +   
Sbjct: 415 DPSLLSKHWSSKRQEYAGFYGSGEVP-------------------SHGEARTGLTPLKDS 455

Query: 454 ------EPKPVEMKPVDYDNLKFDHYNMRSKYG-DDSYRF 486
                 +PKP EMK VDY++ KF+HYN+RSKYG D SYRF
Sbjct: 456 LTLPEDKPKPAEMKHVDYESPKFEHYNIRSKYGPDSSYRF 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572439|ref|NP_974315.1| NHL domain-containing protein [Arabidopsis thaliana] gi|332642057|gb|AEE75578.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 326/491 (66%), Positives = 379/491 (77%), Gaps = 33/491 (6%)

Query: 10  LTLLIAFTLQ---FQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVET 66
            TL I FTL    FQA AAP+G LIKH++S+LKWTT SSSK  Q+D NVLQFENGYLVET
Sbjct: 22  FTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVET 81

Query: 67  VIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVD 126
           V+EGN+IGVVPYKIRVS+DGEL+AVDE+NSNI+KITPPLSQYSRGRLVAGSFQG TGH D
Sbjct: 82  VVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHAD 141

Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSED 186
           GKP+EARFNHP+GVTMDDKGN+YVADTLNLAIRKIGD+GVTTIAGGKSN+AG+RDGPSED
Sbjct: 142 GKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSED 201

Query: 187 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYN-SISPTDILMVVGAVLV 245
           AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL+++DC+YQ + SIS TDIL+V+GAVL+
Sbjct: 202 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLI 261

Query: 246 GYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQ 305
           GY TCMLQQGFG  FFS+TQ  SE+ + EE   KE     +P+      KEEPGWPSFGQ
Sbjct: 262 GYATCMLQQGFGNSFFSKTQVGSETSYEEEHPGKE--KLSRPVHEKTITKEEPGWPSFGQ 319

Query: 306 LIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAV 365
           L+ DL KLALE + S   + VP RF+   T  NL PL+D L MPEDE  PP VQR  +  
Sbjct: 320 LLTDLCKLALEFITS---HLVPARFQ---TNPNLRPLKDRLIMPEDEQEPPRVQRHTAPA 373

Query: 366 PLSETHQVRTPGTGDKYPDMKPPKIKSAS-FKDSSLSTK--HR-SSKRQEYAEFYGSGEV 421
           P+SE+     P   D YP+ K PK++S+S  KD +LS+   HR SSKRQ+YA+FY SGEV
Sbjct: 374 PISESRHAHLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEV 433

Query: 422 PPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPV---EMKPVDYDN-LKFDHYNMR- 476
             P    K  KER+R R RDK+ E        EPKP     +KPV+Y N  KFDHYNMR 
Sbjct: 434 AQP----KIHKERSRRRHRDKTTE-------TEPKPTPSDTVKPVEYSNSSKFDHYNMRS 482

Query: 477 SKYGDDS-YRF 486
           SKYG ++ +RF
Sbjct: 483 SKYGPETPFRF 493

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834352|ref|XP_002885058.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330898|gb|EFH61317.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 324/488 (66%), Positives = 375/488 (76%), Gaps = 30/488 (6%)

Query: 10  LTLLIAFTLQFQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIE 69
            TL I FT  FQA AAP+G LIKH++ +LKWTT SSSK  Q+D NVLQFENGYLVETV+E
Sbjct: 21  FTLWIVFTFPFQAQAAPSGSLIKHMSWVLKWTTGSSSKISQSDTNVLQFENGYLVETVVE 80

Query: 70  GNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKP 129
           GNEIGVVPYKIRVS DGEL+AVDE+NSNI+KITPPLSQYSRGRLVAGSFQG TGH DGKP
Sbjct: 81  GNEIGVVPYKIRVSHDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKP 140

Query: 130 NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKF 189
           +EARFNHP+GVTMDDKGN+YV DTLNLAIRKIGD+GVTTIAGGKSN+AG+RDGPSEDAKF
Sbjct: 141 SEARFNHPRGVTMDDKGNVYVGDTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKF 200

Query: 190 SNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYN-SISPTDILMVVGAVLVGYV 248
           SNDFDVVYVR TCSLLVIDRGNAALRQISL+ +DC+YQ + SIS TDIL+V+GAVL+GY 
Sbjct: 201 SNDFDVVYVRSTCSLLVIDRGNAALRQISLSDEDCDYQDDSSISLTDILLVIGAVLIGYA 260

Query: 249 TCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQLII 308
           TC+LQQGFG  FFS+TQ  SE+ F EE   KE      P+   +  KEEPGWPSFGQLII
Sbjct: 261 TCLLQQGFGNSFFSKTQLESETSFEEEHPGKE--KLSLPVHETKVTKEEPGWPSFGQLII 318

Query: 309 DLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLS 368
           DL KLAL+ + S   + VP RF +S    NL PL+D L+MPEDE  PP VQR  +  P+S
Sbjct: 319 DLCKLALDFITS---HLVPTRFTTS---HNLRPLKDRLKMPEDEQEPPRVQRHTAPAPIS 372

Query: 369 ETHQVRTPGTGDKYPDMKPPKIKSAS-FKDSSLS-TKHR--SSKRQEYAEFYGSGEVPPP 424
           E+     P   D YP+ K PK++S+S  KD +LS +KH   SSKRQ+YA+FY SGEV PP
Sbjct: 373 ESRHAHLPKADDSYPEHKTPKLRSSSVMKDPALSASKHHRSSSKRQDYAQFYASGEVAPP 432

Query: 425 YSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPV---EMKPVDYDN-LKFDHYNMR-SKY 479
               K  KER+R R RDK+ E        EPK      +KPV+Y N  KFDHYNMR SKY
Sbjct: 433 ----KIHKERSRRRHRDKTTE-------TEPKLTPSDTVKPVEYSNSSKFDHYNMRSSKY 481

Query: 480 GDDS-YRF 486
           G ++ +RF
Sbjct: 482 GPETPFRF 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331093|ref|NP_188104.2| NHL domain-containing protein [Arabidopsis thaliana] gi|20260314|gb|AAM13055.1| unknown protein [Arabidopsis thaliana] gi|25083516|gb|AAN72090.1| unknown protein [Arabidopsis thaliana] gi|332642056|gb|AEE75577.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 325/491 (66%), Positives = 378/491 (76%), Gaps = 34/491 (6%)

Query: 10  LTLLIAFTLQ---FQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVET 66
            TL I FTL    FQA AAP+G LIKH++S+LKWTT SSSK  Q+D NVLQFENGYLVET
Sbjct: 22  FTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVET 81

Query: 67  VIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVD 126
           V+EGN+IGVVPYKIRVS+DGEL+AVDE+NSNI+KITPPLSQYSRGRLVAGSFQG TGH D
Sbjct: 82  VVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHAD 141

Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSED 186
           GKP+EARFNHP+GVTMDDKGN+YVADTLNLAIRKIGD+GVTTIAGGKSN+AG+RDGPSED
Sbjct: 142 GKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSED 201

Query: 187 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYN-SISPTDILMVVGAVLV 245
           AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL+++DC+YQ + SIS TDIL+V+GAVL+
Sbjct: 202 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLI 261

Query: 246 GYVTCMLQQGFGPFFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQ 305
           GY TCMLQQGFG  FFS+T   SE+ + EE   KE     +P+      KEEPGWPSFGQ
Sbjct: 262 GYATCMLQQGFGNSFFSKTVG-SETSYEEEHPGKE--KLSRPVHEKTITKEEPGWPSFGQ 318

Query: 306 LIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAV 365
           L+ DL KLALE + S   + VP RF+   T  NL PL+D L MPEDE  PP VQR  +  
Sbjct: 319 LLTDLCKLALEFITS---HLVPARFQ---TNPNLRPLKDRLIMPEDEQEPPRVQRHTAPA 372

Query: 366 PLSETHQVRTPGTGDKYPDMKPPKIKSAS-FKDSSLSTK--HR-SSKRQEYAEFYGSGEV 421
           P+SE+     P   D YP+ K PK++S+S  KD +LS+   HR SSKRQ+YA+FY SGEV
Sbjct: 373 PISESRHAHLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEV 432

Query: 422 PPPYSKSKSQKERTRHRQRDKSGELVYGVSGMEPKPV---EMKPVDYDN-LKFDHYNMR- 476
             P    K  KER+R R RDK+ E        EPKP     +KPV+Y N  KFDHYNMR 
Sbjct: 433 AQP----KIHKERSRRRHRDKTTE-------TEPKPTPSDTVKPVEYSNSSKFDHYNMRS 481

Query: 477 SKYGDDS-YRF 486
           SKYG ++ +RF
Sbjct: 482 SKYGPETPFRF 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.921	0.908	0.669	1.4e-158
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.913	0.872	0.362	1.7e-68
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.806	0.719	0.393	5.8e-66
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.746	0.481	0.359	4.8e-55
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.407	0.495	0.425	2.2e-34
TAIR|locus:2010728	1055	AT1G56500 [Arabidopsis thalian	0.292	0.134	0.306	0.0002

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
 Identities = 320/478 (66%), Positives = 373/478 (78%)

Query:    20 FQAHAAPAGPLIKHLTSLLKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYK 79
             FQA AAP+G LIKH++S+LKWTT SSSK  Q+D NVLQFENGYLVETV+EGN+IGVVPYK
Sbjct:    35 FQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYK 94

Query:    80 IRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKG 139
             IRVS+DGEL+AVDE+NSNI+KITPPLSQYSRGRLVAGSFQG TGH DGKP+EARFNHP+G
Sbjct:    95 IRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRG 154

Query:   140 VTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR 199
             VTMDDKGN+YVADTLNLAIRKIGD+GVTTIAGGKSN+AG+RDGPSEDAKFSNDFDVVYVR
Sbjct:   155 VTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKFSNDFDVVYVR 214

Query:   200 PTCSLLVIDRGNAALRQISLNQDDCEYQYNS-ISPTDILMVVGAVLVGYVTCMLQQGFGP 258
             PTCSLLVIDRGNAALRQISL+++DC+YQ +S IS TDIL+V+GAVL+GY TCMLQQGFG 
Sbjct:   215 PTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGN 274

Query:   259 FFFSRTQQPSESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSFGQLIIDLSKLALEAM 318
              FFS+TQ  SE+ + EE   KE     +P+      KEEPGWPSFGQL+ DL KLALE +
Sbjct:   275 SFFSKTQVGSETSYEEEHPGKE--KLSRPVHEKTITKEEPGWPSFGQLLTDLCKLALEFI 332

Query:   319 GSMFLNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGT 378
              S   + VP RF+   T  NL PL+D L MPEDE  PP VQR  +  P+SE+     P  
Sbjct:   333 TS---HLVPARFQ---TNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISESRHAHLPKA 386

Query:   379 GDKYPDMKPPKIKSAS-FKDSSLSTK--HR-SSKRQEYAEFYGSGEVPPPYSKSKSQKER 434
              D YP+ K PK++S+S  KD +LS+   HR SSKRQ+YA+FY SGEV  P    K  KER
Sbjct:   387 DDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEVAQP----KIHKER 442

Query:   435 TRHRQRDKSGELVYGVSGMEPKPVE---MKPVDYDNL-KFDHYNMRS-KYGDDS-YRF 486
             +R R RDK+ E        EPKP     +KPV+Y N  KFDHYNMRS KYG ++ +RF
Sbjct:   443 SRRRHRDKTTET-------EPKPTPSDTVKPVEYSNSSKFDHYNMRSSKYGPETPFRF 493

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 174/480 (36%), Positives = 270/480 (56%)

Query:    28 GPLIKHLTSLLKW--TTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSED 85
             G +  H +SL+KW  + ++++K   A  ++++FENGY VETV +G+++G+ PY I V  +
Sbjct:    34 GFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYSIEVLPN 93

Query:    86 GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK 145
             GEL  +D  NSNI KI+  LS YSR RLV GS +GY GHVDG+  +A+ NHPKG+T+DD+
Sbjct:    94 GELLILDSENSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKGLTVDDR 153

Query:   146 GNLYVADTLNLAIRKIGDAGVTTIAGGKS-NVAGFRDGPSEDAKFSNDFDVVYVRPTCSL 204
             GN+YVADT+N AIRKI + GVTTIAGGK+    G  DGPSEDAKFSNDFDVVYV  +CSL
Sbjct:   154 GNIYVADTVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYVGSSCSL 213

Query:   205 LVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRT 264
             LVIDRGN A+R+I L+ DDC YQY S  P  I ++V A   GY+  +LQ+  G    S  
Sbjct:   214 LVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGSIVSSHN 273

Query:   265 QQPSESEFNEETEIKELSNKEKP-IPIVESM---KEEPGWPSFGQLIIDLSKLALEAM-- 318
              Q     F  + + K + +     IP  +     +EE    S G+L+ +  +  +E +  
Sbjct:   274 DQEM---FEADPDQKPMKHSRPSLIPAGDEQLEKQEETFVVSLGKLVSNAWESVMEILRK 330

Query:   319 ---GSMFLNFVPFRFRSSGTKGNLT-PLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVR 374
                G+ F  +     +S+    +   P++++  + +++  PPV  R  +  P  +T+   
Sbjct:   331 KQTGTSFQQYHGTTKQSAAFSTSTPWPIQESFVIRDEDGPPPVEPRNPT--P-RKTYAFM 387

Query:   375 TPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKER 434
             +    +K   ++  +   +S+ D+    + +  ++Q + +     +    + +  S    
Sbjct:   388 SKDA-EKMQQLRQSRAFYSSW-DAEFPNQQQQQQKQ-HQKHQHQQQQQQQHRRHYSSIPH 444

Query:   435 TRHRQ-RDKSGELVYG---------VSGMEPKPVE----MKPVDYDNLKFDHYNMRSKYG 480
             T + Q  +KS E+V+G         V+  +PKP+E    M      NL +  +++   YG
Sbjct:   445 TYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNNNTQQNLHYRSHSVSYPYG 504

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 166/422 (39%), Positives = 239/422 (56%)

Query:    33 HLTSLLKW----TTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGEL 88
             H TSLLKW    + ++++K      ++++FENGY VETV++G+++G+ PY I+V  +GEL
Sbjct:    99 HGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVLDGSKLGIEPYSIQVLSNGEL 158

Query:    89 FAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNL 148
               +D  NSNI +I+  LS YSR RLV GS +GY GHVDG+  +AR N+PKG+T+DD+GN+
Sbjct:   159 LILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLNNPKGLTVDDRGNI 218

Query:   149 YVADTLNLAIRKIGDAGVTTIAGGKS-NVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVI 207
             YVADT+N AIRKI +AGVTTIAGGK     G  DGPSEDAKFSNDFDVVY+  +CSLLVI
Sbjct:   219 YVADTVNNAIRKISEAGVTTIAGGKMVRGGGHVDGPSEDAKFSNDFDVVYLGSSCSLLVI 278

Query:   208 DRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQP 267
             DRGN A+R+I L+ DDC  QY S  P  I ++V AV  GY+  +LQ+         T Q 
Sbjct:   279 DRGNQAIREIQLHFDDCADQYGSGFPLGIAVLVAAVFFGYMLALLQRRLSSIVSYHTDQE 338

Query:   268 SESEFNEETEIKELSNKEKPIPIVESMKEEPGWPSF-GQLIIDLSK---LALEAMGSMF- 322
                   ++  IK +    +P  I+   ++E    SF G L I +S     ++E    MF 
Sbjct:   339 VFEAVPDQDPIKPV----RPPLILTGDEQEKQEESFLGTLQIFISNAWVFSVELFSGMFP 394

Query:   323 ---------LNFVPFRFRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQV 373
                      LNF     + S       P++++  +   +  PPV  R  +A P  + +  
Sbjct:   395 GLRKKQTVGLNFNHQETKHSAFSTTSWPIQESFVIHNKDEPPPVESR--NATP-GKIYPF 451

Query:   374 RTPGTGDKYPDMKPPKIKSASFKDSSLSTKHRSSKRQEYAEFYGSGEVPPPYSKSKSQKE 433
              +    +K   ++  +    S  D+    + +  K Q+Y   + S     PY+  +   E
Sbjct:   452 MSKDATEKMQQLRQSRALYRSL-DAEFLQEQQQEKHQQYHHRHHS---TIPYTLYEQSSE 507

Query:   434 RT 435
             +T
Sbjct:   508 KT 509

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 143/398 (35%), Positives = 229/398 (57%)

Query:    27 AGPLIKHLTSL-LKWTTRSSSKAPQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSED 85
             A  L K L SL    TT +++K+  +  +++++E+GY +ETV +G+++G+ PY I VS +
Sbjct:    42 ASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNMETVFDGSKLGIEPYAIEVSPN 101

Query:    86 G-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD 144
             G EL  +D  NSNI KI+ PLS+Y + +L++GS +GYTGHVDGK  EAR N P+G+ MDD
Sbjct:   102 GGELIVLDSENSNIHKISMPLSRYGKPKLLSGSQEGYTGHVDGKLKEARMNRPRGLAMDD 161

Query:   145 KGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSL 204
             +GN+YVADT+N+AIRKI D GV+TIA G     G ++   E  +FS+DFD++YV  +CSL
Sbjct:   162 RGNIYVADTINMAIRKISDDGVSTIAAGGRWSGGSKE---ESMRFSDDFDLIYVSSSCSL 218

Query:   205 LVIDRGNAALRQISLNQDDCEYQYNSISPTDI--LMVVGAVLVGYVTCMLQQGFGPFFFS 262
             LVIDRGN  +++I L+  DC           +   ++V AV  GY+  +L +     F S
Sbjct:   219 LVIDRGNQLIKEIQLHDHDCSQPEPDTDSLHLGTALLVAAVFFGYMLALLVRRVRSLF-S 277

Query:   263 RTQQPSESEFNEETEIKELSNKEK---PI--PIV----ESMKEEPGWPSFGQLIIDLSKL 313
              +   ++S+ +  T    ++  ++   P+  P++    ES KEE    S G+L++     
Sbjct:   278 SSSHDTKSKRHVATPSMTMAPYQRYPRPVRQPLIPPQHESEKEEGFLGSLGKLVVKTGSS 337

Query:   314 ALEAM-GSMFLNFVPFRFRS--SGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSET 370
               E M GS   N +P  F       + N  P++++  +PE++  PP ++ +    P  + 
Sbjct:   338 VSEMMSGSR--NVIPPNFHQYHHQQEPNQWPVQESFAIPEEDG-PPALEPRSGTNP--DK 392

Query:   371 HQVRTPGTG---------DKYPDMKPPKIK-SASFKDS 398
               +R  GT          D+Y + +   +  +ASF+D+
Sbjct:   393 PYLRAQGTNQNRSYYQDYDQYQNQQKRNVNDTASFEDN 430

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/207 (42%), Positives = 120/207 (57%)

Query:    53 GNVLQFENGYLVETVIEGNEIGVVPYKIR-VSEDGELFAVDEVNSNIVKITPPLSQYSRG 111
             G ++  E GY V TV++G++ G+ PY I  +     L  +D   S     + PLS  S  
Sbjct:    21 GKIV-LEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVI 79

Query:   112 RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIA 170
                AG   G +GHVDGK   +RF+ P+G  +D KGN+YVAD  N AIRKI  +G VTTIA
Sbjct:    80 NRFAGD--GSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIA 137

Query:   171 GGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNS 230
             GG S   G RDGP+++A FS+DF++ +V   C LLV D GN  +RQI+L ++DC    +S
Sbjct:   138 GGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHS 197

Query:   231 ISPTDILMVVGAVLVGYVTCMLQQGFG 257
                T  L  +G VL    +C+L    G
Sbjct:   198 NLGTYSLWSIGIVL----SCILGVAIG 220

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 49/160 (30%), Positives = 73/160 (45%)

Query:    77 PYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYT------GHVDGKP 129
             P  I +  D  E +  D  +S+I  +     Q    RL+AG    ++      G  DG  
Sbjct:   741 PSGISLGPDLKEAYIADSESSSIRALD---LQTGGSRLLAGGDPYFSENLFKFGDNDGVG 797

Query:   130 NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG-GKSNVAGFRDGPSED 186
              E    HP GV   + G +Y+ D+ N  I+K+      V T+AG GK   AGF+DG  + 
Sbjct:   798 AEVLLQHPLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGK---AGFKDGKVKG 854

Query:   187 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ-DDCE 225
             A+ S    +  +     L V D  N+ +R I LN+ +D E
Sbjct:   855 AQLSEPAGLA-ITENGRLFVADTNNSLIRYIDLNKGEDSE 893


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      486       471   0.00099  118 3  11 23  0.45    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  262 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.71u 0.10s 47.81t   Elapsed:  00:00:02
  Total cpu time:  47.71u 0.10s 47.81t   Elapsed:  00:00:02
  Start:  Fri May 10 11:29:35 2013   End:  Fri May 10 11:29:37 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027848001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (484 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	486
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	3e-10
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	1e-05
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	2e-04
pfam01436	28	pfam01436, NHL, NHL repeat	4e-04

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 123 GHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFR 180
           G  DG  +E    HP GV     G +YVAD+ N  I+K+  A   VTT+AG  +  AGF+
Sbjct: 792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG--TGKAGFK 849

Query: 181 DGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD 223
           DG +  A+ S    +        L V D  N+ +R + LN+ +
Sbjct: 850 DGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGE 891

Length = 1057

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  +  ++DG+++  D  N  I K+ P      R   +AG+  G  G  DGK  +A+ + 
Sbjct: 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATK---RVTTLAGT--GKAGFKDGKALKAQLSE 860

Query: 137 PKGVTMDDKGNLYVADTLNLAIR 159
           P G+ + + G L+VADT N  IR
Sbjct: 861 PAGLALGENGRLFVADTNNSLIR 883

Length = 1057

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 120 GYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG--VTTIAGGKSNV 176
           G  G  DG   +A FN P+G+  + K N LYVADT N A+R+I      V T+AG  +  
Sbjct: 609 GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKG 668

Query: 177 AGFRDG 182
           + ++ G
Sbjct: 669 SDYQGG 674

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 134 FNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           FN P GV +D  G++YVAD+ N  ++  
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	486
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.48
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.42
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.29
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.98
COG3391	381	Uncharacterized conserved protein [Function unknow	98.67
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.57
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.54
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.5
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.36
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.36
COG3391	381	Uncharacterized conserved protein [Function unknow	98.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.29
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.25
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.16
PRK11028	330	6-phosphogluconolactonase; Provisional	98.11
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.11
PRK11028	330	6-phosphogluconolactonase; Provisional	98.06
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.01
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.74
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.67
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.31
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.29
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.12
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.1
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.99
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.97
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.94
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.88
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.51
PRK02888	635	nitrous-oxide reductase; Validated	96.4
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.37
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.29
COG3211	616	PhoX Predicted phosphatase [General function predi	95.87
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.49
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.47
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.35
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	95.34
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.06
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.95
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.9
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.6
KOG1215	877	consensus Low-density lipoprotein receptors contai	93.84
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.73
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.45
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.28
PRK02888	635	nitrous-oxide reductase; Validated	93.11
KOG0266	456	consensus WD40 repeat-containing protein [General	92.91
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.44
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	91.88
COG3211	616	PhoX Predicted phosphatase [General function predi	91.49
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.67
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	90.57
KOG0266	456	consensus WD40 repeat-containing protein [General	90.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.78
PRK03629	429	tolB translocation protein TolB; Provisional	89.7
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	89.62
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	89.42
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	89.39
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.12
smart00284	255	OLF Olfactomedin-like domains.	87.32
PRK04792	448	tolB translocation protein TolB; Provisional	87.0
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	86.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	86.41
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	86.31
PRK01742	429	tolB translocation protein TolB; Provisional	86.16
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	84.41
PRK02889	427	tolB translocation protein TolB; Provisional	83.99
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	83.73
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	83.67
KOG1215	877	consensus Low-density lipoprotein receptors contai	83.42
PTZ00421	493	coronin; Provisional	82.56
PRK03629	429	tolB translocation protein TolB; Provisional	82.35
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	82.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	81.85
PRK05137	435	tolB translocation protein TolB; Provisional	81.72
PRK04792	448	tolB translocation protein TolB; Provisional	81.63
PRK04922	433	tolB translocation protein TolB; Provisional	81.57
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	80.64
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	80.45
PRK00178	430	tolB translocation protein TolB; Provisional	80.27
PRK05137	435	tolB translocation protein TolB; Provisional	80.15
PRK04043	419	tolB translocation protein TolB; Provisional	80.12

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.70  E-value=4.7e-16  Score=181.13  Aligned_cols=142  Identities=34%  Similarity=0.465  Sum_probs=117.6

Q ss_pred             CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEeccc------CCccccCCCCccccccCCcceEEEcCCC
Q 011435           74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSF------QGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~------~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      +..|.||+++++|+ |||+|..+++|++++.++.   ...+++|..      ....|..+|....+.|++|.||++|++|
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg---~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG  815 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTG---GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG  815 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC---cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence            46899999999987 9999999999999998743   234444421      1123434555556789999999999999


Q ss_pred             CEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          147 NLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       147 ~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +|||||..|++|++||.++  +.+++|.  +..||.||....+.|+.|.+|+ ++++|+|||+|.+|++|++|+++.
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCC
Confidence            9999999999999999876  7888875  5568888888889999999998 788999999999999999999975

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.66  E-value=3.2e-15  Score=174.22  Aligned_cols=143  Identities=27%  Similarity=0.401  Sum_probs=112.9

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      +.+|.||++|. +|+|||+|..+++|++++.+|.    ....+|. .|..|..+|.+..+.|+.|.||++|++|+ ||||
T Consensus       567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence            36899999997 5789999999999999999853    3444443 35567778888889999999999999877 9999


Q ss_pred             eCCCCEEEEEcCCC--ceEEcCCCCCCCC--cCCC-CccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          152 DTLNLAIRKIGDAG--VTTIAGGKSNVAG--FRDG-PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       152 D~~n~rIrkid~~G--v~tiaGg~~g~~G--~~DG-~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                      |+.|++|++||..+  +++++|.+  ..|  +.+| ......|+.|++|++...++.|||+|.++++|++++.....
T Consensus       642 Dt~n~~Ir~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        642 DTENHALREIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             eCCCceEEEEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            99999999999765  78888752  222  2222 22234589999998544489999999999999999987543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.48  E-value=1.6e-12  Score=127.08  Aligned_cols=116  Identities=22%  Similarity=0.305  Sum_probs=88.1

Q ss_pred             cCccceeEEEccCCeEEEEECCC--------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435           73 IGVVPYKIRVSEDGELFAVDEVN--------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD  144 (486)
Q Consensus        73 ~~~~P~GlAVd~dG~LYVaD~~n--------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~  144 (486)
                      ....|+++++|++|+|||+|...        ++|+++++++    ....+..                .|..|+||++++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~----------------~~~~pNGi~~s~  143 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVAD----------------GLGFPNGIAFSP  143 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEE----------------EESSEEEEEEET
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC----eEEEEec----------------CcccccceEECC
Confidence            56789999999999999999865        5799999873    2333332                266899999999


Q ss_pred             CCC-EEEEeCCCCEEEEEcCCC----c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEE
Q 011435          145 KGN-LYVADTLNLAIRKIGDAG----V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ  216 (486)
Q Consensus       145 dG~-LYVAD~~n~rIrkid~~G----v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~  216 (486)
                      +|+ |||+|+.+++|++++.+.    +   ..++...             .....|.|++ +|.+|+|||++.++++|.+
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~pDG~~-vD~~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-------------GGPGYPDGLA-VDSDGNLWVADWGGGRIVV  209 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-------------SSSCEEEEEE-EBTTS-EEEEEETTTEEEE
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcC-------------CCCcCCCcce-EcCCCCEEEEEcCCCEEEE
Confidence            997 999999999999998642    2   2222110             0013488897 8999999999999999999


Q ss_pred             EECCCC
Q 011435          217 ISLNQD  222 (486)
Q Consensus       217 id~~G~  222 (486)
                      ++++|.
T Consensus       210 ~~p~G~  215 (246)
T PF08450_consen  210 FDPDGK  215 (246)
T ss_dssp             EETTSC
T ss_pred             ECCCcc
Confidence            999986

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.42  E-value=3.2e-12  Score=144.60  Aligned_cols=209  Identities=23%  Similarity=0.339  Sum_probs=137.3

Q ss_pred             CCCCcEEEccCCcEEEEEecCc---------ccCccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCc--ccccEEEecc
Q 011435           50 QADGNVLQFENGYLVETVIEGN---------EIGVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQ--YSRGRLVAGS  117 (486)
Q Consensus        50 ~~~gsvv~~~~G~~vetv~~G~---------~~~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~--~~~~~~vaG~  117 (486)
                      ..+|+++.-+-+|+.+...+|+         ..-..-+-||+|| ||.|||+|+..++|+|+..-...  -....+++|.
T Consensus       373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~  452 (1899)
T KOG4659|consen  373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD  452 (1899)
T ss_pred             cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence            3456665444444444443433         2224557899998 99999999999999999642111  1235678886


Q ss_pred             c------CCccccCCCC-ccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCC--C-CcCCC-Ccc
Q 011435          118 F------QGYTGHVDGK-PNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNV--A-GFRDG-PSE  185 (486)
Q Consensus       118 ~------~G~~G~~dG~-~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~--~-G~~DG-~~~  185 (486)
                      .      ...||  ||. +.+|+|..|.||++|.+|+||+||.  .+||+||.+| |+++.|.....  + .+..+ ...
T Consensus       453 Ge~Clp~desCG--DGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~  528 (1899)
T KOG4659|consen  453 GEVCLPADESCG--DGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLV  528 (1899)
T ss_pred             CcCccccccccC--cchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchh
Confidence            3      22366  565 6899999999999999999999995  7899999999 88888764322  0 11111 245


Q ss_pred             ccccCCCceeEEEcCCCeEEEEeCC-------CCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcc
Q 011435          186 DAKFSNDFDVVYVRPTCSLLVIDRG-------NAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGP  258 (486)
Q Consensus       186 ~a~f~~P~gIa~vd~~G~LYVaD~g-------n~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~  258 (486)
                      +.+|..|+++|+.+-++.|||.|..       +++|+.|.-....|...+...... -.....++...-.+++  +..|-
T Consensus       529 ~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s-kla~H~tl~~~r~Iav--g~~G~  605 (1899)
T KOG4659|consen  529 DLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSAS-KLADHRTLLIQRDIAV--GTDGA  605 (1899)
T ss_pred             heeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhh-hhhhhhhhhhhhceee--cCCce
Confidence            6688999999977778999999954       677776666666777765433222 2223334444444444  34444


Q ss_pred             eEEeecC
Q 011435          259 FFFSRTQ  265 (486)
Q Consensus       259 ~~~a~~~  265 (486)
                      ++++.++
T Consensus       606 lyvaEsD  612 (1899)
T KOG4659|consen  606 LYVAESD  612 (1899)
T ss_pred             EEEEecc
Confidence            4444443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.29  E-value=2.1e-11  Score=138.13  Aligned_cols=139  Identities=24%  Similarity=0.446  Sum_probs=112.2

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccC-----CccccCCCCccccccCCcceEEEcCCCCE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQ-----GYTGHVDGKPNEARFNHPKGVTMDDKGNL  148 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~-----G~~G~~dG~~~~a~Ln~P~GIavD~dG~L  148 (486)
                      -+|..||||| |+.|||.|  +|-|++|+.+    .++++++|.+.     +........+.++.+-.|..|||..+|.|
T Consensus       533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l  606 (1899)
T KOG4659|consen  533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL  606 (1899)
T ss_pred             ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence            6999999998 88899999  6899999998    56788888741     11112222346777888999999999999


Q ss_pred             EEEeCCC---CEEEEEcCCC-ceEEcCCCCCCC--------CcC--CCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435          149 YVADTLN---LAIRKIGDAG-VTTIAGGKSNVA--------GFR--DGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL  214 (486)
Q Consensus       149 YVAD~~n---~rIrkid~~G-v~tiaGg~~g~~--------G~~--DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI  214 (486)
                      |||+++.   ||||++..+| +..+||..+.+.        .|+  |..+.+|+|+.|..+| |.++|.|||||.+|-||
T Consensus       607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence            9999875   6789999999 899999865321        121  4578999999999998 89999999999999999


Q ss_pred             EEEECC
Q 011435          215 RQISLN  220 (486)
Q Consensus       215 r~id~~  220 (486)
                      +++...
T Consensus       686 r~Vs~~  691 (1899)
T KOG4659|consen  686 RKVSAR  691 (1899)
T ss_pred             hhhhhc
Confidence            988644

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.24  E-value=3.6e-10  Score=110.44  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=100.4

Q ss_pred             ceeEEEc-cCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVS-EDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd-~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      |.|++++ ++|.|||++..+  +.+++..+.   ....++....          ....++.|+++++|++|+|||+|...
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g---~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG--IAVVDPDTG---KVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC--EEEEETTTT---EEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             CceEEEEccCCEEEEEEcCc--eEEEecCCC---cEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence            9999999 789999999754  444476543   3454444211          01257889999999999999999865


Q ss_pred             --------CEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 011435          156 --------LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEY  226 (486)
Q Consensus       156 --------~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~  226 (486)
                              ++|+++++++ +..+..                .+..|+||++..+...|||+|+.+++|++++.+......
T Consensus       107 ~~~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~  170 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPDGKVTVVAD----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL  170 (246)
T ss_dssp             BCTTCGGSEEEEEEETTSEEEEEEE----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred             CccccccccceEEECCCCeEEEEec----------------CcccccceEECCcchheeecccccceeEEEeccccccce
Confidence                    5799999997 555443                267899999655444799999999999999997431111


Q ss_pred             cccCCCCcceEEE-EeeeeecceEeeeccCCcceEEeecCC
Q 011435          227 QYNSISPTDILMV-VGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       227 ~~~~~~~~~i~t~-~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      .       ....+ -.....|+...+..+..|+++++....
T Consensus       171 ~-------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  171 S-------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             E-------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             e-------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            0       01111 111112455555567888999987643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.3e-08  Score=104.34  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             CccceeEEEccCCeEEEEECC-----------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE
Q 011435           74 GVVPYKIRVSEDGELFAVDEV-----------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM  142 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~-----------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav  142 (486)
                      .+.|+++.++++|.+||.|..           .+.|+++++.+..   .+.+.+                .+..|||||+
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~----------------~~~~~NGla~  170 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDD----------------DLTIPNGLAF  170 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecC----------------cEEecCceEE
Confidence            488999999999999999987           2469999986432   333333                2568999999


Q ss_pred             cCCCC-EEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECC
Q 011435          143 DDKGN-LYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLN  220 (486)
Q Consensus       143 D~dG~-LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~  220 (486)
                      ++||. |||+|+..++|++++-+-.   .+...+...+.+-.   ..=..|-|++ +|.+|+||++...+ .+|.+++++
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~---~g~~~~~~~~~~~~---~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPA---TGPIGGRRGFVDFD---EEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcc---cCccCCcceEEEcc---CCCCCCCceE-EeCCCCEEEecccCCceEEEECCC
Confidence            99995 9999999999999976520   00000000110000   0012477887 89999999755555 499999999


Q ss_pred             CC
Q 011435          221 QD  222 (486)
Q Consensus       221 G~  222 (486)
                      |.
T Consensus       244 G~  245 (307)
T COG3386         244 GK  245 (307)
T ss_pred             Cc
Confidence            86

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.98  E-value=3.4e-08  Score=103.08  Aligned_cols=162  Identities=17%  Similarity=0.233  Sum_probs=101.8

Q ss_pred             CcEEEEEecCcccCccceeEEEccCCeEEEEECCC------------CEEEEEcC-CCC-cccccEEEecccCCccccCC
Q 011435           61 GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVN------------SNIVKITP-PLS-QYSRGRLVAGSFQGYTGHVD  126 (486)
Q Consensus        61 G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n------------~rI~kid~-~g~-~~~~~~~vaG~~~G~~G~~d  126 (486)
                      |+.++.++++.. ...|.+|++|++|+|||++..+            ++|++++. ++. ...+.++++.          
T Consensus         1 Gf~~~l~A~~p~-~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~----------   69 (367)
T TIGR02604         1 GFKVTLFAAEPL-LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE----------   69 (367)
T ss_pred             CcEEEEEECCCc-cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec----------
Confidence            455666665533 4689999999999999998522            48888864 211 1112334443          


Q ss_pred             CCccccccCCcceEEEcCCCCEEEEeCCCCEEEEE-cCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEE
Q 011435          127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI-GDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV  198 (486)
Q Consensus       127 G~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrki-d~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v  198 (486)
                            .++.|+||++.++| |||++.  .+|+++ +.++       .+.++.+..      .+.  ......+++++ +
T Consensus        70 ------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~------~~~--~~~~~~~~~l~-~  131 (367)
T TIGR02604        70 ------ELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFG------GQI--NNHHHSLNSLA-W  131 (367)
T ss_pred             ------CCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccC------CCC--CcccccccCce-E
Confidence                  26789999999998 999985  578888 4433       223332211      000  00123477887 7


Q ss_pred             cCCCeEEEEeCCC-------------------CeEEEEECCCCceeecccCCCCcceEEEEeee-eecceEeeeccCCcc
Q 011435          199 RPTCSLLVIDRGN-------------------AALRQISLNQDDCEYQYNSISPTDILMVVGAV-LVGYVTCMLQQGFGP  258 (486)
Q Consensus       199 d~~G~LYVaD~gn-------------------~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~-~~Gy~l~l~~~~~g~  258 (486)
                      +++|.|||++..+                   +.|.++++++..             ..+.+.+ -.++++++.  ..|.
T Consensus       132 gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-------------~e~~a~G~rnp~Gl~~d--~~G~  196 (367)
T TIGR02604       132 GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-------------LRVVAHGFQNPYGHSVD--SWGD  196 (367)
T ss_pred             CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-------------EEEEecCcCCCccceEC--CCCC
Confidence            8999999988732                   467777777642             2233333 345777774  5678


Q ss_pred             eEEeecCC
Q 011435          259 FFFSRTQQ  266 (486)
Q Consensus       259 ~~~a~~~~  266 (486)
                      +++++.+.
T Consensus       197 l~~tdn~~  204 (367)
T TIGR02604       197 VFFCDNDD  204 (367)
T ss_pred             EEEEccCC
Confidence            88876643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=1.8e-06  Score=90.83  Aligned_cols=119  Identities=20%  Similarity=0.360  Sum_probs=89.3

Q ss_pred             ccceeEEEccCC-eEEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435           75 VVPYKIRVSEDG-ELFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV  150 (486)
Q Consensus        75 ~~P~GlAVd~dG-~LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV  150 (486)
                      ..|.+++++++| .+||+|.  .++.|.+||..+...... ...|.                  .|.|+++|++|+ +||
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~------------------~P~~~a~~p~g~~vyv  176 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN------------------TPTGVAVDPDGNKVYV  176 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC------------------CcceEEECCCCCeEEE
Confidence            369999999988 5999999  579999999875432111 22221                  689999999999 999


Q ss_pred             EeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCC--CeEEEEECCCC
Q 011435          151 ADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGN--AALRQISLNQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn--~rIr~id~~G~  222 (486)
                      +|..+++|..||..+....-+..         ......+..|.+++ ++++|. +||++..+  ++|.+++....
T Consensus       177 ~~~~~~~v~vi~~~~~~v~~~~~---------~~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         177 TNSDDNTVSVIDTSGNSVVRGSV---------GSLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             EecCCCeEEEEeCCCcceecccc---------ccccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence            99999999999988733321110         01123467899998 677775 99999998  79999998864

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.64  E-value=6e-07  Score=89.62  Aligned_cols=143  Identities=17%  Similarity=0.265  Sum_probs=97.3

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEe-cccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .|+.|+.++||.||+++...+.|-++|+.++   ++.++. |.     |           .+|.||.+++||+.||+|++
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~-----G-----------a~Phgiv~gpdg~~Witd~~  123 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGS-----G-----------ASPHGIVVGPDGSAWITDTG  123 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCC---ceEEEecCC-----C-----------CCCceEEECCCCCeeEecCc
Confidence            4999999999999999999999999999864   344443 32     1           27999999999999999998


Q ss_pred             CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCC
Q 011435          155 NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSIS  232 (486)
Q Consensus       155 n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~  232 (486)
                      + .|.|+|+..  ++++--..         ...++.|+.+    +.|+.|+||++... +---++|+...+.        
T Consensus       124 ~-aI~R~dpkt~evt~f~lp~---------~~a~~nlet~----vfD~~G~lWFt~q~-G~yGrLdPa~~~i--------  180 (353)
T COG4257         124 L-AIGRLDPKTLEVTRFPLPL---------EHADANLETA----VFDPWGNLWFTGQI-GAYGRLDPARNVI--------  180 (353)
T ss_pred             c-eeEEecCcccceEEeeccc---------ccCCCcccce----eeCCCccEEEeecc-ccceecCcccCce--------
Confidence            7 999999865  66663321         1122334332    47999999999863 3333455443211        


Q ss_pred             CcceEEEEeeeeecceEeeeccCCcceEEeecC
Q 011435          233 PTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQ  265 (486)
Q Consensus       233 ~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~  265 (486)
                         -+..+--+.-+|++|..  -.|.++.+.+.
T Consensus       181 ---~vfpaPqG~gpyGi~at--pdGsvwyasla  208 (353)
T COG4257         181 ---SVFPAPQGGGPYGICAT--PDGSVWYASLA  208 (353)
T ss_pred             ---eeeccCCCCCCcceEEC--CCCcEEEEecc
Confidence               11112223345888884  56777777664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.7e-06  Score=88.78  Aligned_cols=129  Identities=17%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             CCCCcEEEccCCcEEEEEecCcccCccceeEEEccCC-eEEEEECCCCEEEEEcCC---CCccccc-EEEecccCCcccc
Q 011435           50 QADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDG-ELFAVDEVNSNIVKITPP---LSQYSRG-RLVAGSFQGYTGH  124 (486)
Q Consensus        50 ~~~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~---g~~~~~~-~~vaG~~~G~~G~  124 (486)
                      ...++++.+..+..++++..+.  ...|+|||+++|| .||++|+..++|++++.+   +...+.. .+...   ...  
T Consensus       140 ~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~---~~~--  212 (307)
T COG3386         140 RPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD---EEP--  212 (307)
T ss_pred             CCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc---CCC--
Confidence            3456788877444444444442  2359999999999 599999999999999876   2221111 11111   011  


Q ss_pred             CCCCccccccCCcceEEEcCCCCEEEEeCCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC
Q 011435          125 VDGKPNEARFNHPKGVTMDDKGNLYVADTLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT  201 (486)
Q Consensus       125 ~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~  201 (486)
                                -.|.|+++|.+|+||++-..+ .+|.+++++|  +..+.--                -..|..+++-.++
T Consensus       213 ----------G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP----------------~~~~t~~~FgG~~  266 (307)
T COG3386         213 ----------GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP----------------VKRPTNPAFGGPD  266 (307)
T ss_pred             ----------CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECC----------------CCCCccceEeCCC
Confidence                      269999999999999655444 4999999999  4444321                1245566655543


Q ss_pred             -CeEEEEeCCC
Q 011435          202 -CSLLVIDRGN  211 (486)
Q Consensus       202 -G~LYVaD~gn  211 (486)
                       +.|||+-...
T Consensus       267 ~~~L~iTs~~~  277 (307)
T COG3386         267 LNTLYITSARS  277 (307)
T ss_pred             cCEEEEEecCC
Confidence             4788887655

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.57  E-value=1.3e-06  Score=91.39  Aligned_cols=124  Identities=14%  Similarity=0.225  Sum_probs=83.9

Q ss_pred             EEEecCcccCccceeEEEccCCeEEEEECCCCEEEEE-cCCCC--cccccEEEecccCCccccCCCCccccccCCcceEE
Q 011435           65 ETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI-TPPLS--QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT  141 (486)
Q Consensus        65 etv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~ki-d~~g~--~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa  141 (486)
                      +.+.++   +..|.||++.++| |||++.  .+|+++ +.++.  ..+..++++.......        ......+++++
T Consensus        65 ~vfa~~---l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--------~~~~~~~~~l~  130 (367)
T TIGR02604        65 NVFAEE---LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQI--------NNHHHSLNSLA  130 (367)
T ss_pred             EEeecC---CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCC--------CcccccccCce
Confidence            444444   3469999999998 999974  478888 44432  2223344443211100        00134689999


Q ss_pred             EcCCCCEEEEeCCC-------------------CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC
Q 011435          142 MDDKGNLYVADTLN-------------------LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP  200 (486)
Q Consensus       142 vD~dG~LYVAD~~n-------------------~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~  200 (486)
                      +++||.|||++..+                   +.|++++++|  +..++.+                +.+|+|++ .++
T Consensus       131 ~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G----------------~rnp~Gl~-~d~  193 (367)
T TIGR02604       131 WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG----------------FQNPYGHS-VDS  193 (367)
T ss_pred             ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC----------------cCCCccce-ECC
Confidence            99999999988732                   5689999887  5555543                67899998 688


Q ss_pred             CCeEEEEeCCCCeEEEEEC
Q 011435          201 TCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       201 ~G~LYVaD~gn~rIr~id~  219 (486)
                      +|+||++|.++....++..
T Consensus       194 ~G~l~~tdn~~~~~~~i~~  212 (367)
T TIGR02604       194 WGDVFFCDNDDPPLCRVTP  212 (367)
T ss_pred             CCCEEEEccCCCceeEEcc
Confidence            9999999987766555553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.54  E-value=4.7e-07  Score=93.98  Aligned_cols=148  Identities=18%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             ccceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           75 VVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        75 ~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      -.|-||+++..| +|||||..- -+++|++.|..   ...+++..       +|    ..+...+++.||++|.||++|+
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS  179 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS  179 (376)
T ss_pred             CCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence            479999999876 899999765 58999998754   44555432       22    2456678999999999999998


Q ss_pred             C-----------------CCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435          154 L-----------------NLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL  214 (486)
Q Consensus       154 ~-----------------n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI  214 (486)
                      .                 ++|+.++|+.. + +.+.                ..|..|+|+++..+...|.|++....||
T Consensus       180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl----------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri  243 (376)
T KOG1520|consen  180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL----------------DGLYFPNGLALSPDGSFVLVAETTTARI  243 (376)
T ss_pred             ccccchhheEEeeecCCCccceEEecCcccchhhhh----------------hcccccccccCCCCCCEEEEEeecccee
Confidence            5                 34555665554 2 2222                2377899999666666899999999999


Q ss_pred             EEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEee
Q 011435          215 RQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSR  263 (486)
Q Consensus       215 r~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~  263 (486)
                      .++-+.|....          -..+...++.||...+-.+.-|..+++-
T Consensus       244 ~rywi~g~k~g----------t~EvFa~~LPG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  244 KRYWIKGPKAG----------TSEVFAEGLPGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             eeeEecCCccC----------chhhHhhcCCCCCcceeECCCCCEEEEE
Confidence            99999985220          0123333456666555555555555543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.50  E-value=1.4e-07  Score=62.78  Aligned_cols=28  Identities=46%  Similarity=0.815  Sum_probs=26.4

Q ss_pred             cCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 011435          134 FNHPKGVTMDDKGNLYVADTLNLAIRKI  161 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~n~rIrki  161 (486)
                      |+.|.|||+|++|+|||||+.|+||++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.40  E-value=1.2e-05  Score=80.63  Aligned_cols=168  Identities=17%  Similarity=0.228  Sum_probs=103.2

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEE---------------------EecccCCccccCCCCc---
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRL---------------------VAGSFQGYTGHVDGKP---  129 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~---------------------vaG~~~G~~G~~dG~~---  129 (486)
                      +..|+||.+++||..||+|..+ .|.|+++......+..+                     +.|+ .|..|.-|=..   
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i  180 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVI  180 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcccCce
Confidence            3579999999999999999987 89999985432111111                     0111 12222111000   


Q ss_pred             ---cccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEE
Q 011435          130 ---NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLL  205 (486)
Q Consensus       130 ---~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LY  205 (486)
                         ...+=..|+|||+.+||.+|++....+.|.+||+-. ...+.-..+       +     .-+.-..| .+|+.|.+|
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~-------~-----~~~gsRri-wsdpig~~w  247 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN-------A-----LKAGSRRI-WSDPIGRAW  247 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC-------c-----cccccccc-ccCccCcEE
Confidence               011123689999999999999999999999999754 211111100       0     00011234 489999999


Q ss_pred             EEeCCCCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEeecCCCC
Q 011435          206 VIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPS  268 (486)
Q Consensus       206 VaD~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~~~  268 (486)
                      +++.+++++.+|++.-..          .+-.-+-|...-+|.+-+  |..|-+++++.+...
T Consensus       248 ittwg~g~l~rfdPs~~s----------W~eypLPgs~arpys~rV--D~~grVW~sea~aga  298 (353)
T COG4257         248 ITTWGTGSLHRFDPSVTS----------WIEYPLPGSKARPYSMRV--DRHGRVWLSEADAGA  298 (353)
T ss_pred             EeccCCceeeEeCccccc----------ceeeeCCCCCCCcceeee--ccCCcEEeeccccCc
Confidence            999999999999987431          111122334445566444  777778877776533

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.36  E-value=3.2e-05  Score=79.98  Aligned_cols=127  Identities=16%  Similarity=0.186  Sum_probs=81.8

Q ss_pred             CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      +..|..|++++||. +||++...+.|.+++.+... +..+.+........+. .      .-+.|.+|++++||+ |||+
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~-~------~~~~~~~i~ispdg~~lyvs  262 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGF-T------GENAPAEIAISPDGRFLYVS  262 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTS-C------SSSSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccc-c------ccCCceeEEEecCCCEEEEE
Confidence            46799999999987 99999999999888765211 1222211110000010 1      124799999999998 9999


Q ss_pred             eCCCCEEEEEcCC---C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          152 DTLNLAIRKIGDA---G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       152 D~~n~rIrkid~~---G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.+.+.|..|+.+   | ++.+.--.             ..-..|.++++..+...|||++...+.|..|+.+.
T Consensus       263 nr~~~sI~vf~~d~~~g~l~~~~~~~-------------~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATGTLTLVQTVP-------------TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             ECTTTEEEEEEECTTTTTEEEEEEEE-------------ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             eccCCEEEEEEEecCCCceEEEEEEe-------------CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            9999998887642   3 33321100             00135899985444457999999999999988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.36  E-value=1.5e-06  Score=73.59  Aligned_cols=69  Identities=19%  Similarity=0.366  Sum_probs=52.6

Q ss_pred             eeEEEccC-CeEEEEEC-----------------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcce
Q 011435           78 YKIRVSED-GELFAVDE-----------------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKG  139 (486)
Q Consensus        78 ~GlAVd~d-G~LYVaD~-----------------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~G  139 (486)
                      ++|+|+.+ |.|||+|+                 .++|++++++.+.   +.++++..                |..|+|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~---~~~vl~~~----------------L~fpNG   61 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK---ETTVLLDG----------------LYFPNG   61 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT---EEEEEEEE----------------ESSEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC---eEEEehhC----------------CCccCe
Confidence            47899998 99999996                 3479999999864   35666653                778999


Q ss_pred             EEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435          140 VTMDDKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       140 IavD~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                      |++++|+. |+||++..+||.|+-..|
T Consensus        62 Vals~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   62 VALSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEcCCCCEEEEEeccCceEEEEEEeC
Confidence            99999999 999999999999986544

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.9e-05  Score=83.14  Aligned_cols=139  Identities=20%  Similarity=0.230  Sum_probs=98.9

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      ++++...+.+..++..|.    .|.+++++++|+ +|++|..+++|..|+.++..     +.-+...         ....
T Consensus       143 svid~~t~~~~~~~~vG~----~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-----v~~~~~~---------~~~~  204 (381)
T COG3391         143 SVIDAATNKVTATIPVGN----TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-----VVRGSVG---------SLVG  204 (381)
T ss_pred             EEEeCCCCeEEEEEecCC----CcceEEECCCCCeEEEEecCCCeEEEEeCCCcc-----eeccccc---------cccc
Confidence            446666677777766665    489999999999 99999999999999976422     1102100         0123


Q ss_pred             ccCCcceEEEcCCCC-EEEEeCCC--CEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          133 RFNHPKGVTMDDKGN-LYVADTLN--LAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~~n--~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      .+..|.+++++++|+ +||++..+  +.|.++|...-..++...           ....+ .|.++++.+....+||++.
T Consensus       205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-----------~~~~~-~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-----------PVGSG-APRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-----------ccccC-CCCceeECCCCCEEEEEec
Confidence            466899999999999 99999987  699999977621111110           11234 6888886555558999999


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      ..+.+..++....
T Consensus       273 ~~~~V~vid~~~~  285 (381)
T COG3391         273 QGGTVSVIDGATD  285 (381)
T ss_pred             CCCeEEEEeCCCC
Confidence            9899999998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.29  E-value=1.5e-05  Score=82.44  Aligned_cols=125  Identities=19%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ...|+.+.+++||+ |||+|.+.++|++++.+... +.... .....-..|           ..|..|+++++|+ +||+
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~-~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTP-VDSIKVPPG-----------SGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEE-EEEEECSTT-----------SSEEEEEE-TTSSEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEE-eeccccccC-----------CCCcEEEEcCCcCEEEEe
Confidence            35789999999987 99999999999998876432 11111 111000111           2699999999998 9999


Q ss_pred             eCCCCEEEEEcCC---C-ce---EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          152 DTLNLAIRKIGDA---G-VT---TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       152 D~~n~rIrkid~~---G-v~---tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +...+.|..++.+   | ++   ++.-..   .++.       .-+.|.+|++..+...|||++++.+.|..|+++.
T Consensus       210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---~~~~-------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  210 NELSNTVSVFDYDPSDGSLTEIQTISTLP---EGFT-------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEESCE---TTSC-------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             cCCCCcEEEEeecccCCceeEEEEeeecc---cccc-------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            9999999888644   3 22   222110   0111       1136889985444447999999999999999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.25  E-value=4.7e-06  Score=92.48  Aligned_cols=117  Identities=19%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             CccceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435           74 GVVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA  151 (486)
                      +.+|+|||||--+ ++|.+|+.+.+|-+-.++|+. .++.+..                 .|-+|.+|++|+ .|+||-+
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~-rkvLf~t-----------------dLVNPR~iv~D~~rgnLYwt 1128 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE-RKVLFYT-----------------DLVNPRAIVVDPIRGNLYWT 1128 (1289)
T ss_pred             CCCccceeeeeccceeeeeccccchhheeecCCce-eeEEEee-----------------cccCcceEEeecccCceeec
Confidence            4689999999654 599999999999988888764 2222222                 266899999999 8899999


Q ss_pred             eCC--CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          152 DTL--NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       152 D~~--n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |+.  |-.|-..+.|| -..|.-.              ..+..|+|+.+..-...|-.+|.+|+|+.-+..+|.
T Consensus      1129 DWnRenPkIets~mDG~NrRilin--------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~ 1188 (1289)
T KOG1214|consen 1129 DWNRENPKIETSSMDGENRRILIN--------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT 1188 (1289)
T ss_pred             cccccCCcceeeccCCccceEEee--------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCC
Confidence            986  66788888888 3333221              225569999976667788899999999999999974

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.16  E-value=6.6e-06  Score=69.67  Aligned_cols=68  Identities=16%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             ceEEEcCC-CCEEEEeCC-----------------CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEE
Q 011435          138 KGVTMDDK-GNLYVADTL-----------------NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVY  197 (486)
Q Consensus       138 ~GIavD~d-G~LYVAD~~-----------------n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~  197 (486)
                      ++|+|+.+ |.||++|..                 ++|+.++|+..  ++.++.+                |..|+||++
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~----------------L~fpNGVal   64 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG----------------LYFPNGVAL   64 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE----------------ESSEEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC----------------CCccCeEEE
Confidence            58999998 999999984                 57999999988  5566654                778999995


Q ss_pred             EcCCCeEEEEeCCCCeEEEEECCC
Q 011435          198 VRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       198 vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ..+...|+|++...+||.|+-+.|
T Consensus        65 s~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   65 SPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cCCCCEEEEEeccCceEEEEEEeC
Confidence            444446999999999999999876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.11  E-value=0.00016  Score=73.54  Aligned_cols=125  Identities=13%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecc-cCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGS-FQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~-~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|++++++++|+ |||++...+.|..++.+..  +........ .....|           ..|.+++++++|. |||+
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~~~~~~~g-----------~~p~~~~~~pdg~~lyv~  192 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPAEVTTVEG-----------AGPRHMVFHPNQQYAYCV  192 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC--CcccccCCCceecCCC-----------CCCceEEECCCCCEEEEE
Confidence            4689999999986 8999999999999987531  111000000 000001           2599999999998 8999


Q ss_pred             eCCCCEEEEEcCC---C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          152 DTLNLAIRKIGDA---G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       152 D~~n~rIrkid~~---G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      +...+.|..++.+   | ++.+ ......+   ...   ..-..|.++++ +++| .|||+++..+.|..|+.+
T Consensus       193 ~~~~~~v~v~~~~~~~~~~~~~-~~~~~~p---~~~---~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        193 NELNSSVDVWQLKDPHGEIECV-QTLDMMP---ADF---SDTRWAADIHI-TPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             ecCCCEEEEEEEeCCCCCEEEE-EEEecCC---CcC---CCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEe
Confidence            9988999887753   3 2221 1100000   000   00124556774 4555 699999999999998875

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.11  E-value=4.6e-06  Score=55.51  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=25.2

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEE
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKI  101 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~ki  101 (486)
                      ..|.||+++++|+|||+|.+||||.++
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            469999999999999999999999885

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.06  E-value=6.6e-05  Score=76.38  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..|.+|+++++|+ ||++....+.|..++.+..  +.........             .....|.+++++++|+ |||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~-------------~~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII-------------EGLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec-------------cCCCcccEeEeCCCCCEEEEee
Confidence            3699999999997 8999888888888876421  1111111110             0124689999999987 89999


Q ss_pred             CCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          153 TLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       153 ~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .+.+.|..+|.+.   +.......  .. .       ..=..|.++++......|||++...+.|..++.+
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~--~~-~-------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAE--VT-T-------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCc--ee-c-------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            9999999987543   21100000  00 0       0013488898654445799999999999999986

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.01  E-value=9.7e-05  Score=82.44  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=90.0

Q ss_pred             CccceeEEEcc-CCeEEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY  149 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY  149 (486)
                      +.+|.+|++|+ .|+||.+|+.  |-.|-+.++||..   -++++..               .+.-|+||++|+.-. |-
T Consensus      1110 LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~N---rRilin~---------------DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1110 LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGEN---RRILINT---------------DIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred             ccCcceEEeecccCceeeccccccCCcceeeccCCcc---ceEEeec---------------ccCCCCCceeCcccceee
Confidence            56899999998 7889999984  5569999998753   3444442               245799999999765 88


Q ss_pred             EEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435          150 VADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC  224 (486)
Q Consensus       150 VAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~  224 (486)
                      -+|.+++|+--+.++|  -.++.                ..|.+|++|+ .+. .++|.+|+..++|.-+++.+...
T Consensus      1172 WvDAGt~rleC~~p~g~gRR~i~----------------~~LqYPF~it-sy~-~~fY~TDWk~n~vvsv~~~~~~~ 1230 (1289)
T KOG1214|consen 1172 WVDAGTKRLECTLPDGTGRRVIQ----------------NNLQYPFSIT-SYA-DHFYHTDWKRNGVVSVNKHSGQF 1230 (1289)
T ss_pred             EEecCCcceeEecCCCCcchhhh----------------hcccCceeee-ecc-ccceeeccccCceEEeecccccc
Confidence            9999999999999998  23332                2378999997 444 45999999999999999987533

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.92  E-value=0.00026  Score=73.90  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=66.1

Q ss_pred             CCcceEEEcCCC-CEEEEeCCCCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435          135 NHPKGVTMDDKG-NLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       135 n~P~GIavD~dG-~LYVAD~~n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      .+|.||+++..| +|||||.+ --+.+|++.| . +.++...           ....+...+++. ++++|.||++|+..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~-----------~G~~~kf~N~ld-I~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEA-----------EGKPFKFLNDLD-IDPEGVVYFTDSSS  181 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccc-----------cCeeeeecCcee-EcCCCeEEEecccc
Confidence            389999999987 89999986 5688999988 4 3333321           224466677887 56799999999764


Q ss_pred             -----------------CeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCc
Q 011435          212 -----------------AALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFG  257 (486)
Q Consensus       212 -----------------~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g  257 (486)
                                       +|+.++|+...            ....+...+.|..++++..++--
T Consensus       182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK------------~~~VLld~L~F~NGlaLS~d~sf  232 (376)
T KOG1520|consen  182 KYDRRDFVFAALEGDPTGRLFRYDPSTK------------VTKVLLDGLYFPNGLALSPDGSF  232 (376)
T ss_pred             ccchhheEEeeecCCCccceEEecCccc------------chhhhhhcccccccccCCCCCCE
Confidence                             44444444432            11234555678888888765543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.74  E-value=0.004  Score=60.40  Aligned_cols=119  Identities=14%  Similarity=0.202  Sum_probs=75.8

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      .|..++++++|. ||++....+.|..++.....  ....+....   .+.      ...-..|.+|+++++|+ +|++..
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccc------ccccCCccceEECCCCCEEEEEcC
Confidence            578899999998 56665557789999986432  011111100   000      00112588999999998 689887


Q ss_pred             CCCEEEEEcCCC--ce-EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          154 LNLAIRKIGDAG--VT-TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~G--v~-tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+++|.++|...  +. .+..+                 ..+.++++......||++...++.|.+++....
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLLVG-----------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEeC-----------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            788999998765  22 22111                 135678754444467777777889999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.72  E-value=0.0042  Score=67.13  Aligned_cols=93  Identities=15%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             EccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435           57 QFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH  136 (486)
Q Consensus        57 ~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~  136 (486)
                      ....++.++++++|   +..|.+|++.+||+|||+....++|++++.++.   ....+.+.. ..       ........
T Consensus        15 ~~p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~-~v-------~~~~ge~G   80 (454)
T TIGR03606        15 AASENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLP-EI-------VNDAQHNG   80 (454)
T ss_pred             cCCCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCC-ce-------eccCCCCc
Confidence            34567788888876   457999999999999999987789999986542   122333321 00       00011346


Q ss_pred             cceEEEcCCC-------CEEEEeCC---------CCEEEEEcC
Q 011435          137 PKGVTMDDKG-------NLYVADTL---------NLAIRKIGD  163 (486)
Q Consensus       137 P~GIavD~dG-------~LYVAD~~---------n~rIrkid~  163 (486)
                      +.|||++++-       .|||+-+.         ..+|.|+..
T Consensus        81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l  123 (454)
T TIGR03606        81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTY  123 (454)
T ss_pred             eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEe
Confidence            7899998753       59998421         467877753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.67  E-value=0.0029  Score=66.62  Aligned_cols=136  Identities=18%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++......+.++..|..   -+.++++.+||. +||++. .+.|.+||+..... ..++-+|.               
T Consensus        19 ~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~-v~~i~~G~---------------   78 (369)
T PF02239_consen   19 AVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKV-VATIKVGG---------------   78 (369)
T ss_dssp             EEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSE-EEEEE-SS---------------
T ss_pred             EEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC-CCeEEEEECCcccE-EEEEecCC---------------
Confidence            4567777778888776543   156688889997 999975 57999999975431 11222332               


Q ss_pred             ccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435          133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD  208 (486)
                         .|.||++++||+ |||++...+.|..+|...   +.+|..+...  .  ++     .-++..+|.........+|+-
T Consensus        79 ---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--~--~~-----~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   79 ---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--V--DG-----PESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             ---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE---T--TT-----S---EEEEEE-SSSSEEEEEE
T ss_pred             ---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc--c--cc-----cCCCceeEEecCCCCEEEEEE
Confidence               589999999998 999999999999999776   4555332100  0  00     112344564333333455556


Q ss_pred             CCCCeEEEEECCC
Q 011435          209 RGNAALRQISLNQ  221 (486)
Q Consensus       209 ~gn~rIr~id~~G  221 (486)
                      ...++|+.++...
T Consensus       147 kd~~~I~vVdy~d  159 (369)
T PF02239_consen  147 KDTGEIWVVDYSD  159 (369)
T ss_dssp             TTTTEEEEEETTT
T ss_pred             ccCCeEEEEEecc
Confidence            7778899888653

...

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.41  E-value=0.0017  Score=67.30  Aligned_cols=163  Identities=13%  Similarity=0.062  Sum_probs=88.0

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC----CCEEE
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK----GNLYV  150 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d----G~LYV  150 (486)
                      ..|.+|++.+||.|||++. .++|++++.++..   ...+..... .        .........|||++++    +.|||
T Consensus         2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~-v--------~~~~~~gllgia~~p~f~~n~~lYv   68 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPE-V--------FADGERGLLGIAFHPDFASNGYLYV   68 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TT-T--------BTSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred             CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccc-c--------cccccCCcccceeccccCCCCEEEE
Confidence            4699999999999999998 8899999976532   122322110 0        0111235789999994    78999


Q ss_pred             EeCCC--------CEEEEEcC--CC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC------
Q 011435          151 ADTLN--------LAIRKIGD--AG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR------  209 (486)
Q Consensus       151 AD~~n--------~rIrkid~--~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~------  209 (486)
                      +-+..        .+|.++..  +.     .+++.......         ....-.-..|+ ++++|.|||+--      
T Consensus        69 ~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~---------~~~~H~g~~l~-fgpDG~LYvs~G~~~~~~  138 (331)
T PF07995_consen   69 YYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDT---------SSGNHNGGGLA-FGPDGKLYVSVGDGGNDD  138 (331)
T ss_dssp             EEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTGG
T ss_pred             EEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCC---------CCCCCCCcccc-CCCCCcEEEEeCCCCCcc
Confidence            98742        46766643  21     12222111100         00011123465 789999999852      


Q ss_pred             -------CCCeEEEEECCCCceee---cccCCCCcceEEEEeeee-ecceEeeeccCC-cceEEeecC
Q 011435          210 -------GNAALRQISLNQDDCEY---QYNSISPTDILMVVGAVL-VGYVTCMLQQGF-GPFFFSRTQ  265 (486)
Q Consensus       210 -------gn~rIr~id~~G~~~~~---~~~~~~~~~i~t~~g~~~-~Gy~l~l~~~~~-g~~~~a~~~  265 (486)
                             ..+.|.+|+.+|..-.-   .+......   .+.+.++ ..+.+++  +.. |.+++++..
T Consensus       139 ~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~---~i~A~GlRN~~~~~~--d~~tg~l~~~d~G  201 (331)
T PF07995_consen  139 NAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADS---EIYAYGLRNPFGLAF--DPNTGRLWAADNG  201 (331)
T ss_dssp             GGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTT---TEEEE--SEEEEEEE--ETTTTEEEEEEE-
T ss_pred             cccccccccceEEEecccCcCCCCCccccCCCceE---EEEEeCCCccccEEE--ECCCCcEEEEccC
Confidence                   24679999998851110   00001111   2233333 4466666  444 888887653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.0079  Score=62.24  Aligned_cols=147  Identities=16%  Similarity=0.261  Sum_probs=87.9

Q ss_pred             cCccceeEEEccCCe-EEEEECCCCEEEEEcCCC--CcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435           73 IGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPL--SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L  148 (486)
Q Consensus        73 ~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g--~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L  148 (486)
                      .+..|.-|++-++|. .|+..--++.|.++.-+.  ..+....++.--...+.|          -+.-..|.+++||. |
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGrFL  258 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGRFL  258 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC----------CCceeEEEECCCCCEE
Confidence            346799999999999 799888888877665543  221122222221222222          23446899999999 9


Q ss_pred             EEEeCCCCEEE--EEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 011435          149 YVADTLNLAIR--KIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE  225 (486)
Q Consensus       149 YVAD~~n~rIr--kid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~  225 (486)
                      |++|++-+.|.  ++|+++ ...+.+.-+          ..+  ..|.+..+.....-|+++....+.|.+|..+..   
T Consensus       259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~----------teg--~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~---  323 (346)
T COG2706         259 YASNRGHDSIAVFSVDPDGGKLELVGITP----------TEG--QFPRDFNINPSGRFLIAANQKSDNITVFERDKE---  323 (346)
T ss_pred             EEecCCCCeEEEEEEcCCCCEEEEEEEec----------cCC--cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC---
Confidence            99999988766  456765 322222110          111  236666644555567777777777888777653   


Q ss_pred             ecccCCCCcceEEEEee-eeecceEeee
Q 011435          226 YQYNSISPTDILMVVGA-VLVGYVTCML  252 (486)
Q Consensus       226 ~~~~~~~~~~i~t~~g~-~~~Gy~l~l~  252 (486)
                              .+-.+..+. ...+..+|+.
T Consensus       324 --------TG~L~~~~~~~~~p~Pvcv~  343 (346)
T COG2706         324 --------TGRLTLLGRYAVVPEPVCVK  343 (346)
T ss_pred             --------CceEEecccccCCCCcEEEE
Confidence                    122233333 4466777774

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.31  E-value=0.0017  Score=64.13  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=58.7

Q ss_pred             cceeEEEccCCe-EEEEECCCCEE--EEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNI--VKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI--~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      =|+||++|.|-. .|+.|+.|..|  +.+|..++.....+++..--...         .-.--.|.|+++|.+|+||||-
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---------~~e~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---------PFESLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---------CcCCCCCCcceEccCCcEEEEE
Confidence            489999997655 89999999999  44446655444444444321000         0012258999999999999999


Q ss_pred             CCCCEEEEEcCCC
Q 011435          153 TLNLAIRKIGDAG  165 (486)
Q Consensus       153 ~~n~rIrkid~~G  165 (486)
                      ...++|+++|+..
T Consensus       230 ~ng~~V~~~dp~t  242 (310)
T KOG4499|consen  230 FNGGTVQKVDPTT  242 (310)
T ss_pred             ecCcEEEEECCCC
Confidence            9999999999865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.30  E-value=0.015  Score=56.37  Aligned_cols=125  Identities=18%  Similarity=0.217  Sum_probs=77.9

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ++...+..+.++..+    ..|.+++++++|. ||++....+.|+.++..+..   .....-     .+           
T Consensus        16 ~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~-----~~-----------   72 (300)
T TIGR03866        16 IDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLP-----SG-----------   72 (300)
T ss_pred             EECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEecc-----CC-----------
Confidence            445556655555432    2378999999987 78888888899999976421   111110     00           


Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-  209 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~-  209 (486)
                      ..|..++++++|+ ||++....+.|+.+|...   +..+..+                 ..|.+++ .+++|.++++.. 
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~~~~~~-~~~dg~~l~~~~~  134 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----------------VEPEGMA-VSPDGKIVVNTSE  134 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------------CCcceEE-ECCCCCEEEEEec
Confidence            1366889999988 788877778999999765   2222111                 1356776 566676555444 


Q ss_pred             CCCeEEEEECCC
Q 011435          210 GNAALRQISLNQ  221 (486)
Q Consensus       210 gn~rIr~id~~G  221 (486)
                      ....+..++...
T Consensus       135 ~~~~~~~~d~~~  146 (300)
T TIGR03866       135 TTNMAHFIDTKT  146 (300)
T ss_pred             CCCeEEEEeCCC
Confidence            344566667654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.29  E-value=0.00073  Score=67.54  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=45.8

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ..|.++++++ .|+|||....+.+|+.+|.+|...+...+..    |..|      ....+.+|.|||+|++|+|||+..
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----g~~g------l~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----GFHG------LSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----TGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----cccC------cccccCCccEEEECCCCCEEEEcC
Confidence            5799999997 6889999999999999998865322111111    2222      234688999999999999999986


Q ss_pred             CCCEEEEE
Q 011435          154 LNLAIRKI  161 (486)
Q Consensus       154 ~n~rIrki  161 (486)
                      - |..++|
T Consensus       241 p-Nlfy~f  247 (248)
T PF06977_consen  241 P-NLFYRF  247 (248)
T ss_dssp             T-TEEEEE
T ss_pred             C-ceEEEe
Confidence            4 466665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.14  E-value=0.0046  Score=61.85  Aligned_cols=121  Identities=12%  Similarity=0.168  Sum_probs=65.4

Q ss_pred             ceeEEEccC-CeEEEEECCCC-EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeC
Q 011435           77 PYKIRVSED-GELFAVDEVNS-NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~d-G~LYVaD~~n~-rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~  153 (486)
                      -+|||+|+. +.||++--..- +|+.+...... .........     ...+   ....+..|.+|++|+ .|+|||-..
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~-----~~~~---~~~~~~d~S~l~~~p~t~~lliLS~  190 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQ-----DLDD---DKLFVRDLSGLSYDPRTGHLLILSD  190 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-H-----HHH----HT--SS---EEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeecccc-----cccc---ccceeccccceEEcCCCCeEEEEEC
Confidence            589999985 55888754433 57777641100 011111110     0000   122456799999999 667999999


Q ss_pred             CCCEEEEEcCCC-c-eEE--cCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435          154 LNLAIRKIGDAG-V-TTI--AGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI  217 (486)
Q Consensus       154 ~n~rIrkid~~G-v-~ti--aGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i  217 (486)
                      .+.+|..+|.+| + ..+  ..+..         .....+..|-||| .|++|+|||+...| +..+|
T Consensus       191 es~~l~~~d~~G~~~~~~~L~~g~~---------gl~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  191 ESRLLLELDRQGRVVSSLSLDRGFH---------GLSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             TTTEEEEE-TT--EEEEEE-STTGG---------G-SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred             CCCeEEEECCCCCEEEEEEeCCccc---------CcccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence            999999999999 3 322  22110         1224577899998 68999999999866 55555

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.12  E-value=0.0076  Score=63.23  Aligned_cols=111  Identities=15%  Similarity=0.117  Sum_probs=72.7

Q ss_pred             CeEEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC-------
Q 011435           86 GELFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT-------  153 (486)
Q Consensus        86 G~LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-------  153 (486)
                      ..+||.|..    .++|.+||.+...      +.|...  .|           ..|.|+ +++||. ||||.+       
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~------v~g~i~--~G-----------~~P~~~-~spDg~~lyva~~~~~R~~~   72 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGR------VLGMTD--GG-----------FLPNPV-VASDGSFFAHASTVYSRIAR   72 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCE------EEEEEE--cc-----------CCCcee-ECCCCCEEEEEecccccccc
Confidence            359999987    3899999987432      222211  11           168997 999988 999999       


Q ss_pred             --CCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 011435          154 --LNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQD  222 (486)
Q Consensus       154 --~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G~  222 (486)
                        ..+.|.+||......++.-..+      ..........|..+++..++..|||++.. .+.|.+||+...
T Consensus        73 G~~~d~V~v~D~~t~~~~~~i~~p------~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658        73 GKRTDYVEVIDPQTHLPIADIELP------EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             CCCCCEEEEEECccCcEEeEEccC------CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence              8899999998773332211000      00011124467778744444479999966 899999998864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.10  E-value=0.019  Score=58.79  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=78.6

Q ss_pred             eeEEEccC---CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC-
Q 011435           78 YKIRVSED---GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT-  153 (486)
Q Consensus        78 ~GlAVd~d---G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-  153 (486)
                      .|+|+-..   ..||.+|..+++|-++|..-.   .+ .+.|.+      .|=. ..+. ..|.+|..- .|+|||+=. 
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~---~~-~~~g~F------~DP~-iPag-yAPFnIqni-g~~lyVtYA~  207 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR---PP-PLPGSF------IDPA-LPAG-YAPFNVQNL-GGTLYVTYAQ  207 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCccc---cc-cCCCCc------cCCC-CCCC-CCCcceEEE-CCeEEEEEEe
Confidence            56776532   359999999999999986521   11 222321      1111 1112 258888765 578999732 


Q ss_pred             ------------CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc-----CCCeEEEEeCCCCeE
Q 011435          154 ------------LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-----PTCSLLVIDRGNAAL  214 (486)
Q Consensus       154 ------------~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd-----~~G~LYVaD~gn~rI  214 (486)
                                  +.+-|-+||.+|  +.+++.+              ..|+.|+||+...     -.|.|+|.+-+.++|
T Consensus       208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~--------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I  273 (336)
T TIGR03118       208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS--------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTI  273 (336)
T ss_pred             cCCcccccccCCCcceEEEEcCCCcEEEEeccC--------------CcccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence                        245788888888  5667544              4599999998422     367899999999999


Q ss_pred             EEEECC
Q 011435          215 RQISLN  220 (486)
Q Consensus       215 r~id~~  220 (486)
                      -.||..
T Consensus       274 naFD~~  279 (336)
T TIGR03118       274 NAYDPQ  279 (336)
T ss_pred             EEecCC
Confidence            999986

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.03  E-value=0.0093  Score=65.74  Aligned_cols=85  Identities=26%  Similarity=0.333  Sum_probs=55.1

Q ss_pred             CcccCccceeEEEcc-CCeEEEEECCCC-------------------EEEEEcCCCCc------ccccEEEecccCCccc
Q 011435           70 GNEIGVVPYKIRVSE-DGELFAVDEVNS-------------------NIVKITPPLSQ------YSRGRLVAGSFQGYTG  123 (486)
Q Consensus        70 G~~~~~~P~GlAVd~-dG~LYVaD~~n~-------------------rI~kid~~g~~------~~~~~~vaG~~~G~~G  123 (486)
                      |...+..|+||++++ +|.|||+-+.++                   .|+++.+++..      .....+++|.......
T Consensus       345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~  424 (524)
T PF05787_consen  345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG  424 (524)
T ss_pred             ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc
Confidence            334457899999997 688999987666                   79999887541      0112233333111111


Q ss_pred             cCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ...+......|+.|.+|++|++|+|||+.-.
T Consensus       425 ~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  425 NGSNKCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             cccCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence            1112224567999999999999999998643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.99  E-value=0.016  Score=60.77  Aligned_cols=99  Identities=14%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             CCCcEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCC
Q 011435           51 ADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQG  120 (486)
Q Consensus        51 ~~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G  120 (486)
                      +.-.|++...+.++.++..|..    |.++ +++||. ||||.+         ..+.|.++|..+... ..++..+.   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~---   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPE---   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCC---
Confidence            3445688888888888887754    9997 999987 999999         888999999874321 11122221   


Q ss_pred             ccccCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC
Q 011435          121 YTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG  165 (486)
Q Consensus       121 ~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G  165 (486)
                             +........|..+++++||+ |||++.. .+.|-++|...
T Consensus        98 -------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~  137 (352)
T TIGR02658        98 -------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG  137 (352)
T ss_pred             -------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence                   00111245788999999998 9999976 89999999776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.97  E-value=0.0069  Score=62.69  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             cceeEEEccC----CeEEEEECCC--------CEEEEEcCCCC--cccccEEEe-cccCCccccCCCCccccccCCcceE
Q 011435           76 VPYKIRVSED----GELFAVDEVN--------SNIVKITPPLS--QYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGV  140 (486)
Q Consensus        76 ~P~GlAVd~d----G~LYVaD~~n--------~rI~kid~~g~--~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GI  140 (486)
                      ...|||++++    +.|||+-+..        ++|.++..+..  .....++++ +... .         ......-.+|
T Consensus        50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~---------~~~~H~g~~l  119 (331)
T PF07995_consen   50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD-T---------SSGNHNGGGL  119 (331)
T ss_dssp             SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEE
T ss_pred             CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC-C---------CCCCCCCccc
Confidence            4789999984    8899987632        47877765432  112222332 3211 0         0112244679


Q ss_pred             EEcCCCCEEEEeCC-------------CCEEEEEcCCCceEEcCCCCCCCCcC----CCCccccccCCCceeEEEcCCCe
Q 011435          141 TMDDKGNLYVADTL-------------NLAIRKIGDAGVTTIAGGKSNVAGFR----DGPSEDAKFSNDFDVVYVRPTCS  203 (486)
Q Consensus       141 avD~dG~LYVAD~~-------------n~rIrkid~~Gv~tiaGg~~g~~G~~----DG~~~~a~f~~P~gIa~vd~~G~  203 (486)
                      ++++||.|||+=..             .+.|.+|+++|.  +....   +-+.    +...-..-|.+|.++++...+|+
T Consensus       120 ~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~--~p~dn---P~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~  194 (331)
T PF07995_consen  120 AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS--IPADN---PFVGDDGADSEIYAYGLRNPFGLAFDPNTGR  194 (331)
T ss_dssp             EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS--B-TTS---TTTTSTTSTTTEEEE--SEEEEEEEETTTTE
T ss_pred             cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc--CCCCC---ccccCCCceEEEEEeCCCccccEEEECCCCc
Confidence            99999999998432             357889988872  11100   0000    00001123678999995444499


Q ss_pred             EEEEeCCCC
Q 011435          204 LLVIDRGNA  212 (486)
Q Consensus       204 LYVaD~gn~  212 (486)
                      ||++|.+..
T Consensus       195 l~~~d~G~~  203 (331)
T PF07995_consen  195 LWAADNGPD  203 (331)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEccCCC
Confidence            999997754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.94  E-value=0.033  Score=60.37  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             cceeEEEccC-------CeEEEEEC---------CCCEEEEEcCCC--CcccccE-EEecccCCccccCCCCccccccCC
Q 011435           76 VPYKIRVSED-------GELFAVDE---------VNSNIVKITPPL--SQYSRGR-LVAGSFQGYTGHVDGKPNEARFNH  136 (486)
Q Consensus        76 ~P~GlAVd~d-------G~LYVaD~---------~n~rI~kid~~g--~~~~~~~-~vaG~~~G~~G~~dG~~~~a~Ln~  136 (486)
                      .+.|||++|+       +.|||+-+         ...+|.|+..+.  ....... ++.+.. ....           +.
T Consensus        80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP-~~~~-----------H~  147 (454)
T TIGR03606        80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP-AGND-----------HN  147 (454)
T ss_pred             ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC-CCCC-----------cC
Confidence            4689999865       35999842         246888887542  1111222 333321 1111           12


Q ss_pred             cceEEEcCCCCEEEEeCCC--------------------------------CEEEEEcCCCceEEcCCCCCCCCcCCCC-
Q 011435          137 PKGVTMDDKGNLYVADTLN--------------------------------LAIRKIGDAGVTTIAGGKSNVAGFRDGP-  183 (486)
Q Consensus       137 P~GIavD~dG~LYVAD~~n--------------------------------~rIrkid~~Gv~tiaGg~~g~~G~~DG~-  183 (486)
                      =..|++++||.|||+--..                                +.|.||+++|-  +..+..    |.++. 
T Consensus       148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGs--iP~dNP----f~~g~~  221 (454)
T TIGR03606       148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGS--IPKDNP----SINGVV  221 (454)
T ss_pred             CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCC--CCCCCC----ccCCCc
Confidence            3478899999999963322                                25777777761  110000    11110 


Q ss_pred             --ccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          184 --SEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       184 --~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                        .-.--+.+|.+++ .+++|.||++|.+-.
T Consensus       222 ~eIyA~G~RNp~Gla-~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       222 SHIFTYGHRNPQGLA-FTPDGTLYASEQGPN  251 (454)
T ss_pred             ceEEEEeccccceeE-ECCCCCEEEEecCCC
Confidence              0011267899998 577999999998753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.88  E-value=0.014  Score=60.38  Aligned_cols=134  Identities=22%  Similarity=0.285  Sum_probs=78.7

Q ss_pred             ccceeEEEccCCeEEEEECCC------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-
Q 011435           75 VVPYKIRVSEDGELFAVDEVN------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-  147 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-  147 (486)
                      ..++||+++++|.+||++-+.      ++|++++.+|.......+-..-.....+. .+   ...=....|||+.++|. 
T Consensus        85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~-~~---~~~N~G~E~la~~~dG~~  160 (326)
T PF13449_consen   85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT-SG---RRNNRGFEGLAVSPDGRT  160 (326)
T ss_pred             CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc-cc---ccCCCCeEEEEECCCCCE
Confidence            378999998899999999999      99999999865421111111100000000 00   00011457999999999 


Q ss_pred             EEEEeCCC---------------CEEEEEcCC--C--ceEEcCCCCCCCCcC-CCCccccccCCCceeEEEcCCCeEEEE
Q 011435          148 LYVADTLN---------------LAIRKIGDA--G--VTTIAGGKSNVAGFR-DGPSEDAKFSNDFDVVYVRPTCSLLVI  207 (486)
Q Consensus       148 LYVAD~~n---------------~rIrkid~~--G--v~tiaGg~~g~~G~~-DG~~~~a~f~~P~gIa~vd~~G~LYVa  207 (486)
                      ||++-...               .||.++|..  +  ...++        |. |.......-..+.++++ -+++.|+|.
T Consensus       161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~--------y~ld~~~~~~~~~~isd~~a-l~d~~lLvL  231 (326)
T PF13449_consen  161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYA--------YPLDPPPTAPGDNGISDIAA-LPDGRLLVL  231 (326)
T ss_pred             EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEE--------EeCCccccccCCCCceeEEE-ECCCcEEEE
Confidence            88875432               466677654  2  22221        11 11111112345678875 456779999


Q ss_pred             eCC-------CCeEEEEECCC
Q 011435          208 DRG-------NAALRQISLNQ  221 (486)
Q Consensus       208 D~g-------n~rIr~id~~G  221 (486)
                      ++.       ..+|+++++.+
T Consensus       232 ER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  232 ERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             EccCCCCccceEEEEEEEccc
Confidence            988       35688888764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.75  E-value=0.028  Score=57.31  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=46.1

Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC--CCeEEEE
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP--TCSLLVI  207 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~--~G~LYVa  207 (486)
                      .-.|+++|++|+||++|...++|.+.++++      +.+++-.             ...|..|.++. ++.  +|.|||.
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-------------~~~l~~pd~~~-i~~~~~g~L~v~  252 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-------------PRTLQWPDGLK-IDPEGDGYLWVL  252 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------CC-GSSEEEEE-E-T--TS-EEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-------------Cceeeccceee-eccccCceEEEE
Confidence            347999999999999999999999999987      3455432             13488999997 678  8999998


Q ss_pred             eC
Q 011435          208 DR  209 (486)
Q Consensus       208 D~  209 (486)
                      -.
T Consensus       253 sn  254 (287)
T PF03022_consen  253 SN  254 (287)
T ss_dssp             E-
T ss_pred             EC
Confidence            73

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.51  E-value=0.028  Score=55.85  Aligned_cols=79  Identities=13%  Similarity=0.206  Sum_probs=55.5

Q ss_pred             ccCCcceEEEcCCCC-EEEEeCCCCEEEEEc--C-CC-c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeE
Q 011435          133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIG--D-AG-V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSL  204 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid--~-~G-v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~L  204 (486)
                      .+.-|+||++|.+-. .|+.|+.|..|-.+|  - .| +   ..+..-..       .  ....-..|.|++ +|.+|+|
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk-------~--~~~e~~~PDGm~-ID~eG~L  225 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK-------S--QPFESLEPDGMT-IDTEGNL  225 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc-------C--CCcCCCCCCcce-EccCCcE
Confidence            456799999998766 899999999995555  2 23 2   11211100       0  001112488997 7999999


Q ss_pred             EEEeCCCCeEEEEECCC
Q 011435          205 LVIDRGNAALRQISLNQ  221 (486)
Q Consensus       205 YVaD~gn~rIr~id~~G  221 (486)
                      ||+-...++|.++++..
T Consensus       226 ~Va~~ng~~V~~~dp~t  242 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTT  242 (310)
T ss_pred             EEEEecCcEEEEECCCC
Confidence            99999999999999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.51  E-value=0.22  Score=52.52  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=83.9

Q ss_pred             CcEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEE-ecccCCccccCCCCcc
Q 011435           53 GNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLV-AGSFQGYTGHVDGKPN  130 (486)
Q Consensus        53 gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~v-aG~~~G~~G~~dG~~~  130 (486)
                      -+++++..+.++.++..|..    |.|+++++||+ ||+++...+.|..+|..+..  ....+ .+.   ..+  ++   
T Consensus        60 vsviD~~~~~~v~~i~~G~~----~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~---~~~--~~---  125 (369)
T PF02239_consen   60 VSVIDLATGKVVATIKVGGN----PRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGG---MPV--DG---  125 (369)
T ss_dssp             EEEEETTSSSEEEEEE-SSE----EEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--E---E-T--TT---
T ss_pred             EEEEECCcccEEEEEecCCC----cceEEEcCCCCEEEEEecCCCceeEecccccc--ceeeccccc---ccc--cc---
Confidence            35588888888888877655    99999999998 89999999999999976432  12222 121   000  00   


Q ss_pred             ccccCCcceEEEcCCCCEEE-EeCCCCEEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-
Q 011435          131 EARFNHPKGVTMDDKGNLYV-ADTLNLAIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-  203 (486)
Q Consensus       131 ~a~Ln~P~GIavD~dG~LYV-AD~~n~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-  203 (486)
                        .-.+..+|...+....|| +-...++|+.+|...     ++.+.-+                 ..|.|.. .+++|+ 
T Consensus       126 --~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-----------------~~~~D~~-~dpdgry  185 (369)
T PF02239_consen  126 --PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-----------------RFPHDGG-FDPDGRY  185 (369)
T ss_dssp             --S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------TTEEEEE-E-TTSSE
T ss_pred             --cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----------------ccccccc-cCcccce
Confidence              112456787777777554 556678999998543     2233211                 2477876 577764 


Q ss_pred             EEEEeCCCCeEEEEECCCC
Q 011435          204 LLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       204 LYVaD~gn~rIr~id~~G~  222 (486)
                      ++++....+.|..+|....
T Consensus       186 ~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTT
T ss_pred             eeecccccceeEEEeeccc
Confidence            6777777888999997754

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.40  E-value=0.068  Score=59.74  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=60.3

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCce-EEcCCCCCCCCcCCCCcccc-ccCCCceeEEEcCCCeEEEEeCCC
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGVT-TIAGGKSNVAGFRDGPSEDA-KFSNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv~-tiaGg~~g~~G~~DG~~~~a-~f~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      ++|.||++++||. +||+....+.|-+||...+. .|++..    .+.+-...+. .=..|...+ .|.+|+.|++-.-.
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----~~~~~vvaevevGlGPLHTa-FDg~G~aytslf~d  395 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----KPRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFLD  395 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----CccceEEEeeccCCCcceEE-ECCCCCEEEeEeec
Confidence            5899999999999 99999989999999976622 222210    0000000000 012477887 58889999999999


Q ss_pred             CeEEEEECCCCceeecc
Q 011435          212 AALRQISLNQDDCEYQY  228 (486)
Q Consensus       212 ~rIr~id~~G~~~~~~~  228 (486)
                      .+|.+++++.....+.+
T Consensus       396 sqv~kwn~~~a~~~~~g  412 (635)
T PRK02888        396 SQIVKWNIEAAIRAYKG  412 (635)
T ss_pred             ceeEEEehHHHHHHhcc
Confidence            99999998865444433

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.053  Score=57.79  Aligned_cols=133  Identities=22%  Similarity=0.327  Sum_probs=82.7

Q ss_pred             ccceeEEEccC-CeEEEEECCCCEE------EEEcCCCCcccccEEEecccCCccccC--CCCc----c-----ccccCC
Q 011435           75 VVPYKIRVSED-GELFAVDEVNSNI------VKITPPLSQYSRGRLVAGSFQGYTGHV--DGKP----N-----EARFNH  136 (486)
Q Consensus        75 ~~P~GlAVd~d-G~LYVaD~~n~rI------~kid~~g~~~~~~~~vaG~~~G~~G~~--dG~~----~-----~a~Ln~  136 (486)
                      .+|.|+++++. |.||++|.+...+      -.+ ..|..|+......|.  ...|..  ++..    .     -+.--.
T Consensus       239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~--~~~g~~~~~~~~~~~~~~p~~~~~~h~A  315 (399)
T COG2133         239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQ--NYDGRAIPDGTVVAGAIQPVYTWAPHIA  315 (399)
T ss_pred             CCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCc--ccCccccCCCcccccccCCceeeccccc
Confidence            48999999996 9999999876333      222 334445555444442  111110  1111    0     111134


Q ss_pred             cceEEEcC-C------CCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435          137 PKGVTMDD-K------GNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       137 P~GIavD~-d------G~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD  208 (486)
                      |.||++-. +      |.++|+....-.+.+.+++| ...+..+      +..+    ..-.+|-||+ +.+||.|||+|
T Consensus       316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~------fl~~----d~~gR~~dV~-v~~DGallv~~  384 (399)
T COG2133         316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG------FLSG----DLGGRPRDVA-VAPDGALLVLT  384 (399)
T ss_pred             cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEE------EEec----CCCCcccceE-ECCCCeEEEee
Confidence            68999984 2      68999998777777788887 2222211      1000    0014789997 89999999999


Q ss_pred             CC-CCeEEEEECCC
Q 011435          209 RG-NAALRQISLNQ  221 (486)
Q Consensus       209 ~g-n~rIr~id~~G  221 (486)
                      .. +++|+|+...+
T Consensus       385 D~~~g~i~Rv~~~~  398 (399)
T COG2133         385 DQGDGRILRVSYAG  398 (399)
T ss_pred             cCCCCeEEEecCCC
Confidence            87 77999998764

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.34  E-value=0.045  Score=60.42  Aligned_cols=92  Identities=21%  Similarity=0.411  Sum_probs=59.6

Q ss_pred             ccccCCcceEEEcC-CCCEEEEeCCCC-------------------EEEEEcCCC---------c--eEEcCCCCCCCCc
Q 011435          131 EARFNHPKGVTMDD-KGNLYVADTLNL-------------------AIRKIGDAG---------V--TTIAGGKSNVAGF  179 (486)
Q Consensus       131 ~a~Ln~P~GIavD~-dG~LYVAD~~n~-------------------rIrkid~~G---------v--~tiaGg~~g~~G~  179 (486)
                      ...|++|.||++++ +|.||||-+.+.                   +|+++++++         .  ..++|........
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            45799999999999 678999988766                   788887653         1  1122211101111


Q ss_pred             CCCCccccccCCCceeEEEcCCCeEEEEeCCCCe---EEEEECCCCc
Q 011435          180 RDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA---LRQISLNQDD  223 (486)
Q Consensus       180 ~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r---Ir~id~~G~~  223 (486)
                      ..+......|++|-+|+ ++++|+|||++-++..   |.-...+|..
T Consensus       426 ~~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~~~~~~l~g~t~~G~~  471 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLA-FDPDGNLWIQEDGGGSNNNLPGVTPDGEV  471 (524)
T ss_pred             ccCcccCCCcCCCCceE-ECCCCCEEEEeCCCCCCcccccccccCce
Confidence            12233456799999998 6889999999865443   4455555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.17  Score=52.64  Aligned_cols=122  Identities=16%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~  154 (486)
                      ++..-++|+|+ |+++|-+..+|..++.+-+   .... +....-..|           ..|.-|++.++|. .|+....
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg---~L~~-~~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~EL  211 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDG---KLTP-ADPAEVKPG-----------AGPRHIVFHPNGKYAYLVNEL  211 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccC---cccc-ccccccCCC-----------CCcceEEEcCCCcEEEEEecc
Confidence            56677889996 8999999999999887621   1111 111001112           1599999999999 7999988


Q ss_pred             CCEEEEE--cCC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKI--GDA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrki--d~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      |+.|.++  ++. | +..+---...-..|.+       -+.-..|. +.++| .||++|++.+.|..|..+.
T Consensus       212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-------~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-------TNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             CCEEEEEEEcCCCceEEEeeeeccCccccCC-------CCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9988765  443 3 3332111111112221       11223566 45555 7999999999998888764

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.87  E-value=0.1  Score=57.37  Aligned_cols=81  Identities=23%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             CccceeEEEcc-CCeEEEEECCCC----------------EEEEEcCCCCc------ccccEEEecccCCccccCCCCcc
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNS----------------NIVKITPPLSQ------YSRGRLVAGSFQGYTGHVDGKPN  130 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~----------------rI~kid~~g~~------~~~~~~vaG~~~G~~G~~dG~~~  130 (486)
                      ...|++|++.+ .|+||++.+.|.                .|+|+-+.+.-      ....-+.+|...-..+.......
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            47899999997 578999988765                47777665320      11122334432111111111123


Q ss_pred             ccccCCcceEEEcCCCCEEEEeCC
Q 011435          131 EARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus       131 ~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ...|+.|.+|++|+.|+|||+.-+
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg  519 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDG  519 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecC
Confidence            367999999999999999998643

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.49  E-value=0.048  Score=39.53  Aligned_cols=41  Identities=24%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             CeEEEEECCCC-EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435           86 GELFAVDEVNS-NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD  144 (486)
Q Consensus        86 G~LYVaD~~n~-rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~  144 (486)
                      |.||.+|...+ .|.+.+.+|+.   .++++..               .+.+|.|||||.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSN---RRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTS---EEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCC---eEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 99999999864   3444432               277999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.47  E-value=0.84  Score=47.15  Aligned_cols=134  Identities=7%  Similarity=0.006  Sum_probs=71.2

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCC-----CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCE
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPP-----LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNL  148 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~-----g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~L  148 (486)
                      +.+|.||++.+.|.+||+|...+....++.+     +.....+.++-+    ..|       ...-..|+||++......
T Consensus        22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~----~~~-------~~~~~~PTGiVfN~~~~F   90 (336)
T TIGR03118        22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPA----PPP-------LAAEGTPTGQVFNGSDTF   90 (336)
T ss_pred             ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecC----CCC-------CCCCCCccEEEEeCCCce
Confidence            5689999999999999999999988888876     322111111111    111       011225999999865443


Q ss_pred             EEEeCCC---CEEEEEcCCC-ceEEcCCCCCC---CC---cCCCCccccccCCCceeEEE--cCCCeEEEEeCCCCeEEE
Q 011435          149 YVADTLN---LAIRKIGDAG-VTTIAGGKSNV---AG---FRDGPSEDAKFSNDFDVVYV--RPTCSLLVIDRGNAALRQ  216 (486)
Q Consensus       149 YVAD~~n---~rIrkid~~G-v~tiaGg~~g~---~G---~~DG~~~~a~f~~P~gIa~v--d~~G~LYVaD~gn~rIr~  216 (486)
                      -|.....   .+-.....+| |+-........   ..   +.++. ..+.+   .|+|+.  ...+.||.+|-.+++|.+
T Consensus        91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~IDV  166 (336)
T TIGR03118        91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRIDV  166 (336)
T ss_pred             EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCceEE
Confidence            3443221   1112223444 43333211100   00   00110 00110   245532  224689999999999999


Q ss_pred             EECCCC
Q 011435          217 ISLNQD  222 (486)
Q Consensus       217 id~~G~  222 (486)
                      ||..-.
T Consensus       167 Fd~~f~  172 (336)
T TIGR03118       167 FKGSFR  172 (336)
T ss_pred             ecCccc
Confidence            987654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.35  E-value=0.53  Score=50.34  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=73.9

Q ss_pred             eeEEEccCCeEEEEECCC-------------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435           78 YKIRVSEDGELFAVDEVN-------------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD  144 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n-------------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~  144 (486)
                      ..|++++||.|||+=..+             +.|++++.++.      ...+. ++.    ......-.+++|.|+++++
T Consensus       180 ~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~------~~~d~-p~~----~~~i~s~G~RN~qGl~w~P  248 (399)
T COG2133         180 GRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGI------IPADN-PFP----NSEIWSYGHRNPQGLAWHP  248 (399)
T ss_pred             ccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcc------cccCC-CCC----CcceEEeccCCccceeecC
Confidence            358889999999874333             34555555421      11111 000    0111233478999999999


Q ss_pred             C-CCEEEEeCCCCEEEEEcCCCceEEcCCCC----------CCCCcC--CCCccccc----------cCCCceeEEEcCC
Q 011435          145 K-GNLYVADTLNLAIRKIGDAGVTTIAGGKS----------NVAGFR--DGPSEDAK----------FSNDFDVVYVRPT  201 (486)
Q Consensus       145 d-G~LYVAD~~n~rIrkid~~Gv~tiaGg~~----------g~~G~~--DG~~~~a~----------f~~P~gIa~vd~~  201 (486)
                      . |.||++|.+...+  +-.|.++.+.-++.          ...+..  ++. ..+.          -..|.|+++.+.+
T Consensus       249 ~tg~Lw~~e~g~d~~--~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~-~~~~~~~p~~~~~~h~ApsGmaFy~G~  325 (399)
T COG2133         249 VTGALWTTEHGPDAL--RGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGT-VVAGAIQPVYTWAPHIAPSGMAFYTGD  325 (399)
T ss_pred             CCCcEEEEecCCCcc--cCcccccccccCCccCCceeccCcccCccccCCCc-ccccccCCceeeccccccceeEEecCC
Confidence            5 8999999887655  22222222211100          000110  110 0011          1236889876654


Q ss_pred             ------CeEEEEeCCCCeEEEEECCCC
Q 011435          202 ------CSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       202 ------G~LYVaD~gn~rIr~id~~G~  222 (486)
                            +.|+|+.-+...+.+++++|.
T Consensus       326 ~fP~~r~~lfV~~hgsw~~~~~~~~g~  352 (399)
T COG2133         326 LFPAYRGDLFVGAHGSWPVLRLRPDGN  352 (399)
T ss_pred             cCccccCcEEEEeecceeEEEeccCCC
Confidence                  789999999988888888875

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=95.34  E-value=0.037  Score=38.76  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             ccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435          133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                      .+..|+|||+|+.+. ||.+|...+.|.+.+.+|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            367899999999654 999999999999998776

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.28  E-value=0.056  Score=55.09  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCccc-ccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEe
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYS-RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~-~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD  152 (486)
                      .-.|+++|++|+||+++...+.|.++++++.... ...+++-.             ...|..|.+++++.  +|.|||.-
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-------------~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-------------PRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-------------CceeeccceeeeccccCceEEEEE
Confidence            3579999999999999999999999999863211 23445532             22388999999999  99999986


Q ss_pred             CCCCEEEEE
Q 011435          153 TLNLAIRKI  161 (486)
Q Consensus       153 ~~n~rIrki  161 (486)
                         +++.++
T Consensus       254 ---nrl~~~  259 (287)
T PF03022_consen  254 ---NRLQRF  259 (287)
T ss_dssp             ----S--SS
T ss_pred             ---CcchHh
Confidence               444443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.06  E-value=0.87  Score=46.10  Aligned_cols=107  Identities=13%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             cceeEEEccCCeEEEEECCCC--EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           76 VPYKIRVSEDGELFAVDEVNS--NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~--rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      +..|+.++.+|.||.+....+  +|+++++++..   +....--....+              -.||++- ++.||.--+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~---~~~~~~l~~~~F--------------gEGit~~-~d~l~qLTW  107 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK---VLQSVPLPPRYF--------------GEGITIL-GDKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS---EEEEEE-TTT----------------EEEEEEE-TTEEEEEES
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc---EEEEEECCcccc--------------ceeEEEE-CCEEEEEEe
Confidence            578999988999999986544  79999988643   221111111122              2699998 457999999


Q ss_pred             CCCEEEEEcCCCc---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          154 LNLAIRKIGDAGV---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       154 ~n~rIrkid~~Gv---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .++...++|.+.+   .++.-.                 ...+|++ . .+..||++| |+.+|+.+|+.
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y~-----------------~EGWGLt-~-dg~~Li~SD-GS~~L~~~dP~  157 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPYP-----------------GEGWGLT-S-DGKRLIMSD-GSSRLYFLDPE  157 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE-S-----------------SS--EEE-E-CSSCEEEE--SSSEEEEE-TT
T ss_pred             cCCeEEEEccccceEEEEEecC-----------------CcceEEE-c-CCCEEEEEC-CccceEEECCc
Confidence            9999999999884   333211                 0235776 2 345677777 46788888875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.01  E-value=0.87  Score=46.10  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=70.8

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .+-+||++- ++.||..-+.++...++|+++-     . ..+++. +.|            ..-|||.|. ..||++|. 
T Consensus        90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-----~-~~~~~~-y~~------------EGWGLt~dg-~~Li~SDG-  147 (264)
T PF05096_consen   90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-----K-KIGTFP-YPG------------EGWGLTSDG-KRLIMSDG-  147 (264)
T ss_dssp             --EEEEEEE-TTEEEEEESSSSEEEEEETTTT-----E-EEEEEE--SS------------S--EEEECS-SCEEEE-S-
T ss_pred             ccceeEEEE-CCEEEEEEecCCeEEEEccccc-----e-EEEEEe-cCC------------cceEEEcCC-CEEEEECC-
Confidence            357899986 5589999999999999998732     1 112210 011            234999773 46999995 


Q ss_pred             CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .++|+.+|+..   +.++....       +|    ..+..=+.+-++  +|.||---..+.+|.+||+..
T Consensus       148 S~~L~~~dP~~f~~~~~i~V~~-------~g----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  148 SSRLYFLDPETFKEVRTIQVTD-------NG----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             SSEEEEE-TTT-SEEEEEE-EE-------TT----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT
T ss_pred             ccceEEECCcccceEEEEEEEE-------CC----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC
Confidence            78999999987   23332210       11    112334556665  688999889999999999885

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.95  E-value=0.67  Score=47.87  Aligned_cols=30  Identities=20%  Similarity=0.515  Sum_probs=28.6

Q ss_pred             CcceEEEcCCCCEEEEeCCC------CEEEEEcCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLN------LAIRKIGDAG  165 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n------~rIrkid~~G  165 (486)
                      .+.||+++++|.+||++.+.      ++|++++.+|
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G  121 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG  121 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence            68999998899999999999      9999999998

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.90  E-value=0.087  Score=44.45  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=26.4

Q ss_pred             cCCcceEEEcCCCC-EEEEeCCCCEEEEEc
Q 011435          134 FNHPKGVTMDDKGN-LYVADTLNLAIRKIG  162 (486)
Q Consensus       134 Ln~P~GIavD~dG~-LYVAD~~n~rIrkid  162 (486)
                      |..|+||++|++++ ||||+...+.|+++.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            77899999999887 999999999998875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.60  E-value=1.3  Score=45.48  Aligned_cols=148  Identities=15%  Similarity=0.216  Sum_probs=78.3

Q ss_pred             cCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCC--cc--cccEEEecccCC-ccccCCCCc----
Q 011435           59 ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLS--QY--SRGRLVAGSFQG-YTGHVDGKP----  129 (486)
Q Consensus        59 ~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~--~~--~~~~~vaG~~~G-~~G~~dG~~----  129 (486)
                      -.|.++.++.--.  ...|++|+.-.+|..-++|-...+++++..+-.  ..  ....+-.|...+ .+|+ .|-+    
T Consensus       115 ~~GdlirtiPL~g--~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf-EGlA~d~~  191 (316)
T COG3204         115 KEGDLIRTIPLTG--FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF-EGLAWDPV  191 (316)
T ss_pred             cCCceEEEecccc--cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc-eeeecCCC
Confidence            3455555554211  357999999888888889998888877765421  10  000122232221 2332 1111    


Q ss_pred             ----cccc--------------------------------cCCcceEEEcC-CCCEEEEeCCCCEEEEEcCCC-c-e--E
Q 011435          130 ----NEAR--------------------------------FNHPKGVTMDD-KGNLYVADTLNLAIRKIGDAG-V-T--T  168 (486)
Q Consensus       130 ----~~a~--------------------------------Ln~P~GIavD~-dG~LYVAD~~n~rIrkid~~G-v-~--t  168 (486)
                          --++                                ++.=.|+.+|+ +|+|+|--...+++..+|.+| + .  .
T Consensus       192 ~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls  271 (316)
T COG3204         192 DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS  271 (316)
T ss_pred             CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence                0000                                12223445554 444555554556777777777 2 2  1


Q ss_pred             EcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          169 IAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       169 iaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      +.++..   |      -...+..+-||| .|++|+|||+-.-| .-.+|..+
T Consensus       272 L~~g~~---g------L~~dipqaEGia-mDd~g~lYIvSEPn-lfy~F~~~  312 (316)
T COG3204         272 LTKGNH---G------LSSDIPQAEGIA-MDDDGNLYIVSEPN-LFYRFTPQ  312 (316)
T ss_pred             eccCCC---C------CcccCCCcceeE-ECCCCCEEEEecCC-cceecccC
Confidence            222211   1      123355788998 79999999988665 34455443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.60  E-value=0.1  Score=53.33  Aligned_cols=75  Identities=16%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             eeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      .|+.+|+ .|+|+|.....++|+.++.+|...+......    |.+|.      ....-+|.|||+|++|+|||+-.- +
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~----g~~gL------~~dipqaEGiamDd~g~lYIvSEP-n  304 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK----GNHGL------SSDIPQAEGIAMDDDGNLYIVSEP-N  304 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc----CCCCC------cccCCCcceeEECCCCCEEEEecC-C
Confidence            3566664 5678887778888999998865422222222    33442      234568999999999999998643 3


Q ss_pred             EEEEEcC
Q 011435          157 AIRKIGD  163 (486)
Q Consensus       157 rIrkid~  163 (486)
                      .-++|.+
T Consensus       305 lfy~F~~  311 (316)
T COG3204         305 LFYRFTP  311 (316)
T ss_pred             cceeccc
Confidence            4445543

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=93.84  E-value=0.32  Score=56.81  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|+++|- .+++|.+|..+..|.+.+.+++.   ..+++..               .+..|..+++++ .|.+|.+|
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd  541 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD  541 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence            4699999996 66799999999999999877542   3344442               135799999999 77799999


Q ss_pred             CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC-eEEEEECCCCce
Q 011435          153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA-ALRQISLNQDDC  224 (486)
Q Consensus       153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~-rIr~id~~G~~~  224 (486)
                      ++ ..+|.+-..+|  ...+...               .+..|+++++.-.+..+|.+|.... .|.+++.+|...
T Consensus       542 ~~~~~~i~ra~~dg~~~~~l~~~---------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r  602 (877)
T KOG1215|consen  542 WGQPPRIERASLDGSERAVLVTN---------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR  602 (877)
T ss_pred             CCCCchhhhhcCCCCCceEEEeC---------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCce
Confidence            98 45787777888  3333221               1457999998778889999999888 799999998644

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.73  E-value=2.4  Score=44.05  Aligned_cols=121  Identities=17%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCccccc--EEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRG--RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~--~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      +-+.|++ .++.+|++.+.-+.+-.+++.-+..-..  ..+..-.+         ...+.|   ||+|++ ||. -||+-
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~---------eDRCHL---NGlA~~-~g~p~yVTa  169 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAP---------EDRCHL---NGMALD-DGEPRYVTA  169 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCc---------cCceee---cceeee-CCeEEEEEE
Confidence            4588999 6789999999999999999875431111  11111000         011234   599998 566 78764


Q ss_pred             CCCC---EEEEEc-CC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC-CC
Q 011435          153 TLNL---AIRKIG-DA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN-QD  222 (486)
Q Consensus       153 ~~n~---rIrkid-~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~-G~  222 (486)
                      .+..   .=+|-+ .+ | +.-+..+.          ....-|..|.+--+  -+|+|||+|.+.+.|.++|++ |.
T Consensus       170 ~~~sD~~~gWR~~~~~gG~vidv~s~e----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~  234 (335)
T TIGR03032       170 LSQSDVADGWREGRRDGGCVIDIPSGE----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGK  234 (335)
T ss_pred             eeccCCcccccccccCCeEEEEeCCCC----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCc
Confidence            3211   111111 11 2 22222110          00112566766654  368999999999999999997 53

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.45  E-value=0.23  Score=34.65  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=30.8

Q ss_pred             ccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          188 KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       188 ~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+..|+++++....+.||.+|...+.|.+.+.+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            36779999977777899999999999999999974

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.28  E-value=0.3  Score=50.53  Aligned_cols=72  Identities=21%  Similarity=0.350  Sum_probs=48.9

Q ss_pred             CCcEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccc
Q 011435           52 DGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNE  131 (486)
Q Consensus        52 ~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~  131 (486)
                      .|.+++..++.++   .+|   +..|++.-+ .+|.|||+|++.+.|.++|++++   +...++--    .|        
T Consensus       186 gG~vidv~s~evl---~~G---LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G---~~e~Va~v----pG--------  243 (335)
T TIGR03032       186 GGCVIDIPSGEVV---ASG---LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAG---KFQPVAFL----PG--------  243 (335)
T ss_pred             CeEEEEeCCCCEE---EcC---ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCC---cEEEEEEC----CC--------
Confidence            3444566555333   233   346888888 68999999999999999999732   34444432    22        


Q ss_pred             cccCCcceEEEcCCCCEEEE
Q 011435          132 ARFNHPKGVTMDDKGNLYVA  151 (486)
Q Consensus       132 a~Ln~P~GIavD~dG~LYVA  151 (486)
                          .|.||++.  |++.|.
T Consensus       244 ----~~rGL~f~--G~llvV  257 (335)
T TIGR03032       244 ----FTRGLAFA--GDFAFV  257 (335)
T ss_pred             ----CCccccee--CCEEEE
Confidence                58999998  776655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.11  E-value=0.29  Score=54.84  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcc------cccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQY------SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~------~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      .+|+||+++|||. +|++.-..+.|.+||...-..      .--.+++++..  -|           ..|...++|++|+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vG-----------lGPLHTaFDg~G~  387 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LG-----------LGPLHTAFDGRGN  387 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cC-----------CCcceEEECCCCC
Confidence            4699999999998 899988888999999763210      00012333211  11           2699999999999


Q ss_pred             EEEEeCCCCEEEEEcCCC-ceEEcC
Q 011435          148 LYVADTLNLAIRKIGDAG-VTTIAG  171 (486)
Q Consensus       148 LYVAD~~n~rIrkid~~G-v~tiaG  171 (486)
                      .|++=.....|.+.|.+. +..+.|
T Consensus       388 aytslf~dsqv~kwn~~~a~~~~~g  412 (635)
T PRK02888        388 AYTTLFLDSQIVKWNIEAAIRAYKG  412 (635)
T ss_pred             EEEeEeecceeEEEehHHHHHHhcc
Confidence            999988889999998765 444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.91  E-value=2.3  Score=46.03  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.++++.+||.+.++-.....|..+|..... ...+++.|.                -+.-+.++++++|+++++=...+
T Consensus       206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D~  268 (456)
T KOG0266|consen  206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDDG  268 (456)
T ss_pred             eeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----------------CCceEEEEecCCCCEEEEecCCC
Confidence            4678898999988888888888888872110 123444443                22458999999999888888889


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                      .|+..|..+   +..+.+..       +         .-.+++ ...+|+++++-..++.|+.+|.....
T Consensus       269 tvriWd~~~~~~~~~l~~hs-------~---------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHS-------D---------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             cEEEEeccCCeEEEeeeccC-------C---------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence            999988765   44444321       1         123455 67888888888889999999998765

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.44  E-value=1  Score=37.95  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=27.3

Q ss_pred             cCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          189 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       189 f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      |..|+||++......|||++...+.|.++..+
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            78899999655567999999999999998765

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.93  E-value=2.6  Score=44.90  Aligned_cols=79  Identities=22%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE--cC--CCCEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM--DD--KGNLY  149 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav--D~--dG~LY  149 (486)
                      ..++|+++|. .|.|||++-. .-|++++.+-......+.++-. .+ .+         ......||++  ..  +|.|+
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~-~g-~~---------l~aDvEGlaly~~~~g~gYLi  275 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASA-DG-DG---------LVADVEGLALYYGSDGKGYLI  275 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEB-SS-SS---------B-S-EEEEEEEE-CCC-EEEE
T ss_pred             CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecc-cc-cc---------cccCccceEEEecCCCCeEEE
Confidence            5799999996 6889999965 5899998763321122333211 01 01         1224678888  33  45699


Q ss_pred             EEeCCCCEEEEEcCCC
Q 011435          150 VADTLNLAIRKIGDAG  165 (486)
Q Consensus       150 VAD~~n~rIrkid~~G  165 (486)
                      |++.+++...+++..+
T Consensus       276 vSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  276 VSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999998765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=91.88  E-value=8.9  Score=42.21  Aligned_cols=110  Identities=23%  Similarity=0.301  Sum_probs=69.0

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      .-.+|+.+..|+|+.+.+.+ .+.+++..++.+..-.++                 ..=.+|.|+|+.++|.+.|.-...
T Consensus       365 qI~~~~~~~~~~~~t~g~Dd-~l~~~~~~~~~~t~~~~~-----------------~lg~QP~~lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  365 QIKGMAASESGELFTIGWDD-TLRVISLKDNGYTKSEVV-----------------KLGSQPKGLAVLSDGGTAVVACIS  426 (603)
T ss_pred             eEEEEeecCCCcEEEEecCC-eEEEEecccCccccccee-----------------ecCCCceeEEEcCCCCEEEEEecC
Confidence            35688888778888887654 788887653322111100                 011389999999998744443333


Q ss_pred             CEEEEEc-CCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIG-DAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid-~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                       .|..+. ..+++++--+                 ..|..+| +.++++..+.--..+.|..+.+.|.
T Consensus       427 -~iv~l~~~~~~~~~~~~-----------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~  475 (603)
T KOG0318|consen  427 -DIVLLQDQTKVSSIPIG-----------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGD  475 (603)
T ss_pred             -cEEEEecCCcceeeccc-----------------cccceEE-EcCCCCEEEEecccceEEEEEecCC
Confidence             344444 4445555322                 1355676 6788877777777788999998885

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=91.49  E-value=2.6  Score=46.72  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             ccccCCcceEEEcC-CCCEEEEeCCCC----------------EEEEEcCCC-----------ceEEcCCCCCCC-CcCC
Q 011435          131 EARFNHPKGVTMDD-KGNLYVADTLNL----------------AIRKIGDAG-----------VTTIAGGKSNVA-GFRD  181 (486)
Q Consensus       131 ~a~Ln~P~GIavD~-dG~LYVAD~~n~----------------rIrkid~~G-----------v~tiaGg~~g~~-G~~D  181 (486)
                      ...|.+|.+|++.+ .|.+|++.+.|.                +|.++-+.+           +...+|...... +++.
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~  492 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA  492 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence            55689999999998 667999999876                355553321           223333322111 1211


Q ss_pred             CCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          182 GPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       182 G~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                      .... .-|++|.+|+ +|+.|+|||+.-++.
T Consensus       493 ~~~~-~~f~~PDnl~-fD~~GrLWi~TDg~~  521 (616)
T COG3211         493 NINA-NWFNSPDNLA-FDPWGRLWIQTDGSG  521 (616)
T ss_pred             Cccc-ccccCCCceE-ECCCCCEEEEecCCC
Confidence            1112 5699999997 799999999986654

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.67  E-value=6.2  Score=40.54  Aligned_cols=130  Identities=14%  Similarity=0.137  Sum_probs=73.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEc----CCCCEEEE
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD----DKGNLYVA  151 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~LYVA  151 (486)
                      .-+.|..+.+|+++|+-...+.|++|++.++   ++.-..|...+  +  |=.+....|..-.+..+-    .++.|-|-
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG---~I~W~lgG~~~--~--df~~~~~~f~~QHdar~~~~~~~~~~IslF  217 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTG---KIIWRLGGKRN--S--DFTLPATNFSWQHDARFLNESNDDGTISLF  217 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCC---cEEEEeCCCCC--C--cccccCCcEeeccCCEEeccCCCCCEEEEE
Confidence            3467888899999999999999999996542   23323332101  1  101122234433444443    45666666


Q ss_pred             eC----------CCCEEEEEcCCC--ceEEcCCC-CCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435          152 DT----------LNLAIRKIGDAG--VTTIAGGK-SNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       152 D~----------~n~rIrkid~~G--v~tiaGg~-~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id  218 (486)
                      |.          ..++|..+|+..  ++.+..-. ....-++.          -.|-+=.=++|+++|.....+++..++
T Consensus       218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~----------~~G~~Q~L~nGn~li~~g~~g~~~E~~  287 (299)
T PF14269_consen  218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSP----------SQGSAQRLPNGNVLIGWGNNGRISEFT  287 (299)
T ss_pred             cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCccccc----------CCCcceECCCCCEEEecCCCceEEEEC
Confidence            65          345777888766  22222110 00000100          011111336799999999999999999


Q ss_pred             CCCC
Q 011435          219 LNQD  222 (486)
Q Consensus       219 ~~G~  222 (486)
                      .+|+
T Consensus       288 ~~G~  291 (299)
T PF14269_consen  288 PDGE  291 (299)
T ss_pred             CCCC
Confidence            9996

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=90.57  E-value=0.57  Score=33.88  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             CCEEEEeCCCC-EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc
Q 011435          146 GNLYVADTLNL-AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR  199 (486)
Q Consensus       146 G~LYVAD~~n~-rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd  199 (486)
                      |+||.+|...+ +|.+.+.+|  ..++...               .+..|.+|| +|
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------------~l~~P~gia-VD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------------DLQHPEGIA-VD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEES---------------STSSEEEEE-EE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------------CCCCcCEEE-EC
Confidence            57999999999 999999999  4555432               278899998 54

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.02  E-value=31  Score=37.26  Aligned_cols=131  Identities=18%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             EEc-cCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQF-ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~-~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      .+. .++..+.++. |...  .-+++++.++|+++++-...+.|+..+..+..  -...+.+.       .+        
T Consensus       230 wd~~~~~~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h-------s~--------  289 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGH-------SD--------  289 (456)
T ss_pred             eeccCCCeEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeecc-------CC--------
Confidence            444 3334444444 4332  35899999999999998888999999886421  12233332       11        


Q ss_pred             CCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ce----EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          135 NHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VT----TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       135 n~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~----tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                       .=+++++.++|+++++-..++.|+.+|..+ ..    ++.+..              .-. |.--+...+++...++-.
T Consensus       290 -~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--------------~~~-~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  290 -GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE--------------NSA-PVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             -ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC--------------CCC-ceeEEEECCCCcEEEEec
Confidence             236889999999777767789999999776 31    232221              011 333334677887777777


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      .++.++.+++...
T Consensus       354 ~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  354 LDRTLKLWDLRSG  366 (456)
T ss_pred             CCCeEEEEEccCC
Confidence            7778888777754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.78  E-value=1.1  Score=31.33  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=17.6

Q ss_pred             CC-eEEEEECCCCEEEEEcCCC
Q 011435           85 DG-ELFAVDEVNSNIVKITPPL  105 (486)
Q Consensus        85 dG-~LYVaD~~n~rI~kid~~g  105 (486)
                      +| .|||++...+.|..||...
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~   23 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTAT   23 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCC
Confidence            44 4999999999999999853

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK03629 tolB translocation protein TolB; Provisional

Probab=89.70  E-value=19  Score=38.61  Aligned_cols=73  Identities=23%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435           78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D  152 (486)
Q Consensus        78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D  152 (486)
                      ..+++++||+ | |+++. +...|+.++.+++.   .+.+...    .+            .-..+++++||. |+++ +
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~~l~~~----~~------------~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASF----PR------------HNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eEEccCC----CC------------CcCCeEECCCCCEEEEEEc
Confidence            5678999997 4 44432 34568888876432   2222211    01            112468999997 6655 3


Q ss_pred             C-CCCEEEEEcCCC--ceEE
Q 011435          153 T-LNLAIRKIGDAG--VTTI  169 (486)
Q Consensus       153 ~-~n~rIrkid~~G--v~ti  169 (486)
                      . ++..|+.+|.++  +..+
T Consensus       263 ~~g~~~I~~~d~~tg~~~~l  282 (429)
T PRK03629        263 KTGSLNLYVMDLASGQIRQV  282 (429)
T ss_pred             CCCCcEEEEEECCCCCEEEc
Confidence            2 345788888765  4444

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=89.62  E-value=1.4  Score=43.71  Aligned_cols=112  Identities=20%  Similarity=0.339  Sum_probs=59.2

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCc---c--cccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQ---Y--SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~---~--~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      ..|++|+.|.||.++. ++.|+|.......   +  +..+.+.+               ...+...-|..+++|.||+.+
T Consensus        84 ~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~---------------~GW~~f~~vfa~~~GvLY~i~  147 (229)
T PF14517_consen   84 KFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGG---------------TGWNDFDAVFAGPNGVLYAIT  147 (229)
T ss_dssp             SEEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE----------------SSGGGEEEEEE-TTS-EEEEE
T ss_pred             eEEEecCCccEEEecc-ccceeeccCCCccCcchhhccceeccc---------------CCCccceEEEeCCCccEEEEc
Confidence            4799999999999886 5688888764321   0  01122222               124556789999999999999


Q ss_pred             CCCCEEEEE-cCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLNLAIRKI-GDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n~rIrki-d~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+. ++.+. .+++       .+++.++.    +          +..+.-| ...++|+||.+ ..++.|.|......
T Consensus       148 ~dg-~~~~~~~p~~~~~~W~~~s~~v~~~----g----------w~~~~~i-~~~~~g~L~~V-~~~G~lyr~~~p~~  208 (229)
T PF14517_consen  148 PDG-RLYRRYRPDGGSDRWLSGSGLVGGG----G----------WDSFHFI-FFSPDGNLWAV-KSNGKLYRGRPPQN  208 (229)
T ss_dssp             TTE--EEEE---SSTT--HHHH-EEEESS----S----------GGGEEEE-EE-TTS-EEEE--ETTEEEEES---S
T ss_pred             CCC-ceEEeCCCCCCCCccccccceeccC----C----------cccceEE-eeCCCCcEEEE-ecCCEEeccCCccc
Confidence            654 77766 3333       23333321    1          2223445 47889999999 56688888776653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=89.42  E-value=17  Score=33.37  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....+.+++++.++++...++.|..++.....  ....+.+                .-.....+++++++.++++-..+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRG----------------HTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--EEEEecc----------------CCCcEEEEEEcCcCCEEEEEcCC
Confidence            35778888888888877767888888875211  1111111                01246789999988877766657


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...   +..+....                .....++ ..+++ .|+++.. ++.|+.++...
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~----------------~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~  208 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHT----------------GEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLST  208 (289)
T ss_pred             CcEEEEEccccccceeEecCc----------------cccceEE-ECCCcCEEEEecC-CCcEEEEECCC
Confidence            8888888753   33332210                1234555 45555 4544444 77788888764

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=89.39  E-value=0.3  Score=34.80  Aligned_cols=19  Identities=32%  Similarity=0.646  Sum_probs=16.6

Q ss_pred             CcceEEEcCCCCEEEEeCC
Q 011435          136 HPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~  154 (486)
                      .+.+|++|++|||||+=..
T Consensus        14 ~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eEEEEEECCCCCEEEEEee
Confidence            6899999999999998543

SBBP stands for Seven Bladed Beta Propeller.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.12  E-value=6.3  Score=42.04  Aligned_cols=75  Identities=23%  Similarity=0.375  Sum_probs=47.9

Q ss_pred             CcceEEEcC-CCCEEEEeCCCCEEEEEcCC--C--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCCeEEE
Q 011435          136 HPKGVTMDD-KGNLYVADTLNLAIRKIGDA--G--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLV  206 (486)
Q Consensus       136 ~P~GIavD~-dG~LYVAD~~n~rIrkid~~--G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G~LYV  206 (486)
                      .|.|+++|. .|.|||++.. ..||+++.+  +  . +.++... +     ++..     .-.-||++.   +..|.|+|
T Consensus       209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~-g-----~~l~-----aDvEGlaly~~~~g~gYLiv  276 (381)
T PF02333_consen  209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD-G-----DGLV-----ADVEGLALYYGSDGKGYLIV  276 (381)
T ss_dssp             -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS-S-----SSB------S-EEEEEEEE-CCC-EEEEE
T ss_pred             cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc-c-----cccc-----cCccceEEEecCCCCeEEEE
Confidence            789999998 6679999974 789999754  2  1 2221110 0     0110     112456653   33568999


Q ss_pred             EeCCCCeEEEEECCCC
Q 011435          207 IDRGNAALRQISLNQD  222 (486)
Q Consensus       207 aD~gn~rIr~id~~G~  222 (486)
                      ++-+++...+++..+.
T Consensus       277 SsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  277 SSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEGGGTEEEEEESSTT
T ss_pred             EcCCCCeEEEEecCCC
Confidence            9999999999998864

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00284 OLF Olfactomedin-like domains

Probab=87.32  E-value=8.2  Score=39.01  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             eEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC--EEEEeCCCC
Q 011435           79 KIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN--LYVADTLNL  156 (486)
Q Consensus        79 GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~~n~  156 (486)
                      |-+| -+|.||.--.....|.|+|..+........+-+     .|+.+--.-.-.=..=.++|+|.+|-  ||-+...++
T Consensus        78 G~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~-----a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g  151 (255)
T smart00284       78 GVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG-----AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG  151 (255)
T ss_pred             cEEE-ECceEEEEecCCccEEEEECCCCcEEEEEecCc-----cccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence            4444 468999988788899999997543211111111     11100000000001235899999886  666655444


Q ss_pred             E--EEEEcCCC
Q 011435          157 A--IRKIGDAG  165 (486)
Q Consensus       157 r--Irkid~~G  165 (486)
                      .  |-|+|+..
T Consensus       152 ~ivvSkLnp~t  162 (255)
T smart00284      152 KIVISKLNPAT  162 (255)
T ss_pred             CEEEEeeCccc
Confidence            4  45999887

>PRK04792 tolB translocation protein TolB; Provisional

Probab=87.00  E-value=32  Score=37.12  Aligned_cols=69  Identities=17%  Similarity=0.082  Sum_probs=39.6

Q ss_pred             eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435           78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D  152 (486)
Q Consensus        78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D  152 (486)
                      ...++++||+ | |+++. +...|+.++.+++.   ...+...    .|            .-...++++||+ |+++ +
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~~lt~~----~g------------~~~~~~wSPDG~~La~~~~  281 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---REKVTSF----PG------------INGAPRFSPDGKKLALVLS  281 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eEEecCC----CC------------CcCCeeECCCCCEEEEEEe
Confidence            3567889987 4 44443 34478888876532   2222211    01            012468889988 6554 3


Q ss_pred             C-CCCEEEEEcCCC
Q 011435          153 T-LNLAIRKIGDAG  165 (486)
Q Consensus       153 ~-~n~rIrkid~~G  165 (486)
                      . ++..|+++|.++
T Consensus       282 ~~g~~~Iy~~dl~t  295 (448)
T PRK04792        282 KDGQPEIYVVDIAT  295 (448)
T ss_pred             CCCCeEEEEEECCC
Confidence            3 234688888765

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=86.53  E-value=1.1  Score=31.96  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=18.4

Q ss_pred             ccceeEEEccCCeEEEEECCCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNS   96 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~   96 (486)
                      ..+.+|++|++|++||+-..++
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeecC
Confidence            4689999999999999876543

SBBP stands for Seven Bladed Beta Propeller.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=86.41  E-value=26  Score=32.10  Aligned_cols=108  Identities=15%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      ..+.+.++++.+++-..++.|..++.....  ....+.+.                -.....++++++++++++...++.
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~~~~~~~~~~~  116 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGH----------------TSYVSSVAFSPDGRILSSSSRDKT  116 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCccc--ceEEEecc----------------CCcEEEEEEcCCCCEEEEecCCCe
Confidence            478888888655555557788888876321  11222211                114678899988888888776788


Q ss_pred             EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      |..++...   +..+.+.                -.....++ ..+++.++++-..++.|+.++..
T Consensus       117 i~~~~~~~~~~~~~~~~~----------------~~~i~~~~-~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200         117 IKVWDVETGKCLTTLRGH----------------TDWVNSVA-FSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             EEEEECCCcEEEEEeccC----------------CCcEEEEE-EcCcCCEEEEEcCCCcEEEEEcc
Confidence            99998763   3333211                01234454 34445555555556677777765

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=86.31  E-value=9.3  Score=38.00  Aligned_cols=110  Identities=23%  Similarity=0.412  Sum_probs=55.4

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCC---CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPP---LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~---g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .-|+..|+|.||...  ++.+++.++.   +.........+|.    .|       -..|.   .|++|++|.||..+. 
T Consensus        37 ~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~----g~-------W~~F~---~i~~d~~G~LYaV~~-   99 (229)
T PF14517_consen   37 RDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGD----GG-------WNSFK---FIFFDPTGVLYAVTP-   99 (229)
T ss_dssp             SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-----S--------GGG-S---EEEE-TTS-EEEEET-
T ss_pred             ceEEEcCCceEEEEE--CCceEEecCCccCcccccccCccccc----Cc-------cccee---EEEecCCccEEEecc-
Confidence            456778999999998  4488888432   1111122233332    11       12344   999999999998886 


Q ss_pred             CCEEEEEcCC---C---c----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE-ECCC
Q 011435          155 NLAIRKIGDA---G---V----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI-SLNQ  221 (486)
Q Consensus       155 n~rIrkid~~---G---v----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i-d~~G  221 (486)
                      ++.+.+...-   +   .    +.|.+     .|+.|           ...++.+++|.||..+.+. ++.+. .+.+
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~-----~GW~~-----------f~~vfa~~~GvLY~i~~dg-~~~~~~~p~~  160 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGG-----TGWND-----------FDAVFAGPNGVLYAITPDG-RLYRRYRPDG  160 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE------SSGGG-----------EEEEEE-TTS-EEEEETTE--EEEE---SS
T ss_pred             ccceeeccCCCccCcchhhccceeccc-----CCCcc-----------ceEEEeCCCccEEEEcCCC-ceEEeCCCCC
Confidence            5677776532   1   1    22211     22222           2345689999999999665 66666 4444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=86.16  E-value=18  Score=38.50  Aligned_cols=74  Identities=24%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435           78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D  152 (486)
Q Consensus        78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D  152 (486)
                      ..+++++||+ | |+++. .+..|+.++..++.   ...+...    .|            +-..+++++||+ |+++ +
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~---~~~l~~~----~g------------~~~~~~wSPDG~~La~~~~  267 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA---RKVVASF----RG------------HNGAPAFSPDGSRLAFASS  267 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc---eEEEecC----CC------------ccCceeECCCCCEEEEEEe
Confidence            5678999997 4 44432 33578888876432   2223221    11            112478999998 5554 3


Q ss_pred             -CCCCEEEEEcCCC--ceEEc
Q 011435          153 -TLNLAIRKIGDAG--VTTIA  170 (486)
Q Consensus       153 -~~n~rIrkid~~G--v~tia  170 (486)
                       .++-.|+.+|.++  +..+.
T Consensus       268 ~~g~~~Iy~~d~~~~~~~~lt  288 (429)
T PRK01742        268 KDGVLNIYVMGANGGTPSQLT  288 (429)
T ss_pred             cCCcEEEEEEECCCCCeEeec
Confidence             2334678888665  44443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.95  E-value=16  Score=40.04  Aligned_cols=123  Identities=18%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             EEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEE-Ee------
Q 011435           80 IRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYV-AD------  152 (486)
Q Consensus        80 lAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYV-AD------  152 (486)
                      +-..++|+|++...  +++..+|..|..... ..+.+   +          ...|+  .++...++|++++ +.      
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~-~~l~~---~----------~~~~H--HD~~~l~nGn~L~l~~~~~~~~  214 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWE-YDLPG---G----------YYDFH--HDIDELPNGNLLILASETKYVD  214 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT--EEEE-EE--T---T----------EE-B---S-EEE-TTS-EEEEEEETTEE-
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCCEEEe-eecCC---c----------ccccc--cccEECCCCCEEEEEeeccccc
Confidence            45567888777664  688888887542111 11111   0          01233  4888999999443 33      


Q ss_pred             ------CCCCEEEEEcCCC-c-eEEcCCCCC---CC------CcCC--CCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          153 ------TLNLAIRKIGDAG-V-TTIAGGKSN---VA------GFRD--GPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       153 ------~~n~rIrkid~~G-v-~tiaGg~~g---~~------G~~D--G~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                            .....|..+|.+| + ...--....   ..      .+.+  +........+-+.|.+...+++|+|+-+....
T Consensus       215 ~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~  294 (477)
T PF05935_consen  215 EDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSA  294 (477)
T ss_dssp             TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-E
T ss_pred             CCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceE
Confidence                  1146788999888 3 222111000   00      0011  11122233456788877779999999999999


Q ss_pred             EEEEECC
Q 011435          214 LRQISLN  220 (486)
Q Consensus       214 Ir~id~~  220 (486)
                      |.+|+..
T Consensus       295 V~~Id~~  301 (477)
T PF05935_consen  295 VIKIDYR  301 (477)
T ss_dssp             EEEEE-T
T ss_pred             EEEEECC
Confidence            9999944

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=84.41  E-value=44  Score=34.65  Aligned_cols=87  Identities=9%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~  133 (486)
                      ..+.+.+..-++.+. |...  .=..|.+.|-++.|++-+....|+.+|.....   ...+                 -.
T Consensus        83 ryLsl~dNkylRYF~-GH~~--~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~---cqg~-----------------l~  139 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFP-GHKK--RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK---CQGL-----------------LN  139 (311)
T ss_pred             EEEEeecCceEEEcC-CCCc--eEEEEEecCCCCeEEecccCCeEEeeEecCCC---CceE-----------------Ee
Confidence            335566665555444 3322  24788899988999998888889888875221   0001                 11


Q ss_pred             cCCcceEEEcCCCCEEEEeCCCCEEEEEcC
Q 011435          134 FNHPKGVTMDDKGNLYVADTLNLAIRKIGD  163 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~n~rIrkid~  163 (486)
                      +..+.-+|+|++|.|+.+=.++..|..+|.
T Consensus       140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen  140 LSGRPIAAFDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             cCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence            334667899999988887777778988884

>PRK02889 tolB translocation protein TolB; Provisional

Probab=83.99  E-value=48  Score=35.35  Aligned_cols=68  Identities=24%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             eEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e-
Q 011435           79 KIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D-  152 (486)
Q Consensus        79 GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D-  152 (486)
                      .+++++||+ |+++..  .+..|+.++..++.   ...+...    .|            .-...++++||+ |+++ + 
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~~l~~~----~g------------~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RRVVANF----KG------------SNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EEEeecC----CC------------CccceEECCCCCEEEEEEcc
Confidence            567888987 544432  23568888876432   2333321    01            113578888887 5543 3 


Q ss_pred             CCCCEEEEEcCCC
Q 011435          153 TLNLAIRKIGDAG  165 (486)
Q Consensus       153 ~~n~rIrkid~~G  165 (486)
                      .++.+|+.+|.++
T Consensus       261 ~g~~~Iy~~d~~~  273 (427)
T PRK02889        261 DGNSQIYTVNADG  273 (427)
T ss_pred             CCCceEEEEECCC
Confidence            3456788888765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=83.73  E-value=41  Score=35.02  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=38.3

Q ss_pred             eeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE-EEe
Q 011435           78 YKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY-VAD  152 (486)
Q Consensus        78 ~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY-VAD  152 (486)
                      ..+++++||+ |+++...  +..|+.++.++..   ...+...    .+            .....+++++|. |+ ++|
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~----~~------------~~~~~~~s~dg~~l~~~s~  297 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNG----PG------------IDTEPSWSPDGKSIAFTSD  297 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCCC----CC------------CCCCEEECCCCCEEEEEEC
Confidence            4578889986 6665432  3468888876432   2222211    00            112346777887 43 444


Q ss_pred             CC-CCEEEEEcCCC
Q 011435          153 TL-NLAIRKIGDAG  165 (486)
Q Consensus       153 ~~-n~rIrkid~~G  165 (486)
                      .. ...|++++.++
T Consensus       298 ~~g~~~iy~~d~~~  311 (417)
T TIGR02800       298 RGGSPQIYMMDADG  311 (417)
T ss_pred             CCCCceEEEEECCC
Confidence            33 34788888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.67  E-value=11  Score=43.25  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=74.6

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      .-..++..+||.+.++-...+.|.+.+...+..  ..++...                -+.-+++.+..+|+..++-...
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteH----------------ts~Vt~v~f~~~g~~llssSLD  413 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEH----------------TSGVTAVQFTARGNVLLSSSLD  413 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccC----------------CCceEEEEEEecCCEEEEeecC
Confidence            347889999999999999999999998763321  1111111                1124689999999999999999


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLN  220 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~  220 (486)
                      ++||.+|...   ..|+..-.            ..+|   ..++ +|+.|.|.++-..+ -.|.+++..
T Consensus       414 GtVRAwDlkRYrNfRTft~P~------------p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~q  466 (893)
T KOG0291|consen  414 GTVRAWDLKRYRNFRTFTSPE------------PIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQ  466 (893)
T ss_pred             CeEEeeeecccceeeeecCCC------------ceee---eEEE-EcCCCCEEEeeccceEEEEEEEee
Confidence            9999999765   55654321            1222   2455 78888877776543 345555543

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=83.42  E-value=11  Score=44.05  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             ccceeEEEcc-CCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC-CCEEEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVA  151 (486)
                      ..|..+++++ .|.+|.+|++ ..+|.+-.++|..   ..++..               ..+..|+||++|-. ..+|-+
T Consensus       523 ~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~---~~~l~~---------------~~~~~p~glt~d~~~~~~yw~  584 (877)
T KOG1215|consen  523 DLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSE---RAVLVT---------------NGILWPNGLTIDYETDRLYWA  584 (877)
T ss_pred             CCccceeeccccCeeEEecCCCCchhhhhcCCCCC---ceEEEe---------------CCccCCCcceEEeecceeEEE
Confidence            4699999997 6779999987 4578887777653   222221               11457999999984 459999


Q ss_pred             eCCCC-EEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          152 DTLNL-AIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       152 D~~n~-rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |.... .|.+++.+| ...+..              ...+..|.+++.  -.+.+|..|..+..+.+......
T Consensus       585 d~~~~~~i~~~~~~g~~r~~~~--------------~~~~~~p~~~~~--~~~~iyw~d~~~~~~~~~~~~~~  641 (877)
T KOG1215|consen  585 DAKLDYTIESANMDGQNRRVVD--------------SEDLPHPFGLSV--FEDYIYWTDWSNRAISRAEKHKG  641 (877)
T ss_pred             cccCCcceeeeecCCCceEEec--------------cccCCCceEEEE--ecceeEEeeccccceEeeecccC
Confidence            99887 788888888 222211              133567888874  45789999999987777776643

>PTZ00421 coronin; Provisional

Probab=82.56  E-value=83  Score=34.69  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             eeEEEcc-CCeEEEEECCCCEEEEEcCCCCccc-----ccEEEecccCCccccCCCCccccccCCcceEEEcCCC-CEEE
Q 011435           78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYS-----RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLYV  150 (486)
Q Consensus        78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~-----~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYV  150 (486)
                      .++++++ +++++++-..++.|..++.......     ....+.|       +         -..-..|++++++ ++++
T Consensus        79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEEE
Confidence            6888988 7887777777888888876422100     0111111       1         1134578898865 5666


Q ss_pred             EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +=..++.|+..|...   +.++.+..       +         .-..++ ..++|.++++-..++.|+.+|+..
T Consensus       143 Sgs~DgtVrIWDl~tg~~~~~l~~h~-------~---------~V~sla-~spdG~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        143 SAGADMVVNVWDVERGKAVEVIKCHS-------D---------QITSLE-WNLDGSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcCCC-------C---------ceEEEE-EECCCCEEEEecCCCEEEEEECCC
Confidence            655678888888654   33432210       0         123454 345666666666677777777653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=82.35  E-value=60  Score=34.74  Aligned_cols=68  Identities=21%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             eEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E-EEEeC
Q 011435           79 KIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L-YVADT  153 (486)
Q Consensus        79 GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L-YVAD~  153 (486)
                      .+++++||+ |+++..  ++..|+.++.++..   .+.+...        .        ......++++||+ | |++|.
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~--------~--------~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDG--------R--------SNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCC--------C--------CCcCceEECCCCCEEEEEeCC
Confidence            468889997 665532  33468888886532   2222211        0        0234678899998 4 66664


Q ss_pred             C-CCEEEEEcCCC
Q 011435          154 L-NLAIRKIGDAG  165 (486)
Q Consensus       154 ~-n~rIrkid~~G  165 (486)
                      . ..+|++++.++
T Consensus       308 ~g~~~Iy~~d~~~  320 (429)
T PRK03629        308 AGRPQVYKVNING  320 (429)
T ss_pred             CCCceEEEEECCC
Confidence            3 45788888765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=82.17  E-value=40  Score=35.30  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcCC
Q 011435          139 GVTMDDKGNLYVADTLNLAIRKIGDA  164 (486)
Q Consensus       139 GIavD~dG~LYVAD~~n~rIrkid~~  164 (486)
                      +++++ +|.|||.+. ++.++.+|.+
T Consensus       115 ~~~v~-~~~v~v~~~-~g~l~ald~~  138 (394)
T PRK11138        115 GVTVA-GGKVYIGSE-KGQVYALNAE  138 (394)
T ss_pred             ccEEE-CCEEEEEcC-CCEEEEEECC
Confidence            45666 567999874 5788999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=81.85  E-value=35  Score=35.52  Aligned_cols=69  Identities=23%  Similarity=0.131  Sum_probs=39.5

Q ss_pred             eeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           78 YKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        78 ~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ...++++||+ |+++...  .+.|++++..+..   ...+...    .+            ....+++++||+ |+++..
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~~~~~~----~~------------~~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---REKVASF----PG------------MNGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEeecC----CC------------CccceEECCCCCEEEEEEC
Confidence            3456888987 5444433  3578888876432   2222211    01            123468888887 665533


Q ss_pred             --CCCEEEEEcCCC
Q 011435          154 --LNLAIRKIGDAG  165 (486)
Q Consensus       154 --~n~rIrkid~~G  165 (486)
                        ++..|+.++.++
T Consensus       254 ~~~~~~i~~~d~~~  267 (417)
T TIGR02800       254 KDGNPDIYVMDLDG  267 (417)
T ss_pred             CCCCccEEEEECCC
Confidence              245688888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=81.72  E-value=36  Score=36.30  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH  136 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~  136 (486)
                      +|.....+..+...   -..+++.+||+ | |+++. ++..|+.++..++.   ...+...    .|            .
T Consensus       190 dg~~~~~lt~~~~~---v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~----~g------------~  247 (435)
T PRK05137        190 DGANVRYLTDGSSL---VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNF----PG------------M  247 (435)
T ss_pred             CCCCcEEEecCCCC---eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecC----CC------------c
Confidence            44444444443321   24577889997 4 44443 34679999986532   2333321    01            1


Q ss_pred             cceEEEcCCCC-EEEE-eC-CCCEEEEEcCCC
Q 011435          137 PKGVTMDDKGN-LYVA-DT-LNLAIRKIGDAG  165 (486)
Q Consensus       137 P~GIavD~dG~-LYVA-D~-~n~rIrkid~~G  165 (486)
                      -...++++||+ |+++ +. ++..|+.+|.++
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            12557788887 4443 32 345688888665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=81.63  E-value=23  Score=38.24  Aligned_cols=68  Identities=16%  Similarity=0.147  Sum_probs=38.8

Q ss_pred             eEEEccCCe-EEEE-EC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E-EEEeC
Q 011435           79 KIRVSEDGE-LFAV-DE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L-YVADT  153 (486)
Q Consensus        79 GlAVd~dG~-LYVa-D~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L-YVAD~  153 (486)
                      .+++++||+ |+++ +. ++..|+.++.++..   .+.+...                .......++++||. | |.++.
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~----------------~~~~~~p~wSpDG~~I~f~s~~  326 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRH----------------RAIDTEPSWHPDGKSLIFTSER  326 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccC----------------CCCccceEECCCCCEEEEEECC
Confidence            567888887 6554 32 23368888876432   2222211                01234567888887 4 44443


Q ss_pred             -CCCEEEEEcCCC
Q 011435          154 -LNLAIRKIGDAG  165 (486)
Q Consensus       154 -~n~rIrkid~~G  165 (486)
                       ++..|+++|.++
T Consensus       327 ~g~~~Iy~~dl~~  339 (448)
T PRK04792        327 GGKPQIYRVNLAS  339 (448)
T ss_pred             CCCceEEEEECCC
Confidence             345788888764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=81.57  E-value=50  Score=35.23  Aligned_cols=69  Identities=12%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             eeEEEccCCe-EEE-EECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           78 YKIRVSEDGE-LFA-VDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        78 ~GlAVd~dG~-LYV-aD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ..+++++||. |++ +|.. ...|+.++.++..   ...+.-.     |           .....++++++|+ |+++..
T Consensus       295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~-----g-----------~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQ-----G-----------NYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecC-----C-----------CCccCEEECCCCCEEEEEEC
Confidence            4567888887 444 4432 3358888765432   2222210     0           0123578899998 666543


Q ss_pred             C--CCEEEEEcCCC
Q 011435          154 L--NLAIRKIGDAG  165 (486)
Q Consensus       154 ~--n~rIrkid~~G  165 (486)
                      .  ...|..+|.++
T Consensus       356 ~~~~~~I~v~d~~~  369 (433)
T PRK04922        356 SGGQYRIAVMDLST  369 (433)
T ss_pred             CCCceeEEEEECCC
Confidence            3  34688888655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.64  E-value=3.8  Score=40.43  Aligned_cols=62  Identities=21%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCcccc-CCCCccccccCCcceEEEcCCC-CEEEEeC
Q 011435           85 DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGH-VDGKPNEARFNHPKGVTMDDKG-NLYVADT  153 (486)
Q Consensus        85 dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~-~dG~~~~a~Ln~P~GIavD~dG-~LYVAD~  153 (486)
                      ||.||.-=+...+|.||+++.+   ++...+.-    +|. ..-.+.....|-++|||.|+++ .+|++-.
T Consensus       185 dG~lyANVw~t~~I~rI~p~sG---rV~~widl----S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSG---RVVAWIDL----SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCC---cEEEEEEc----cCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            3555554455678999999853   34444332    110 0111123346789999999977 4888743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=80.45  E-value=36  Score=39.21  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe-CCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD-TLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD-~~n  155 (486)
                      -.++.+..+|++.++-+-.++|+.+|..-  |...+++..-            ...+|   .-||+|+.|.|.+|- ...
T Consensus       395 Vt~v~f~~~g~~llssSLDGtVRAwDlkR--YrNfRTft~P------------~p~Qf---scvavD~sGelV~AG~~d~  457 (893)
T KOG0291|consen  395 VTAVQFTARGNVLLSSSLDGTVRAWDLKR--YRNFRTFTSP------------EPIQF---SCVAVDPSGELVCAGAQDS  457 (893)
T ss_pred             eEEEEEEecCCEEEEeecCCeEEeeeecc--cceeeeecCC------------Cceee---eEEEEcCCCCEEEeeccce
Confidence            46788888999999988899999998752  2334444431            11122   379999999966654 445


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      -.|.+.+...   +..+.|-.        |+        -.++. .++.|++.++-+....||..+.=
T Consensus       458 F~IfvWS~qTGqllDiLsGHE--------gP--------Vs~l~-f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDILSGHE--------GP--------VSGLS-FSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             EEEEEEEeecCeeeehhcCCC--------Cc--------ceeeE-EccccCeEEeccccceEEEEEee
Confidence            6777777543   34444421        11        12344 56677777777777777776643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=80.27  E-value=83  Score=33.21  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE-Ee
Q 011435           78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV-AD  152 (486)
Q Consensus        78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD  152 (486)
                      ...++++||+ | |+++. .+..|++++.+++.   ...+...    .|            .-...++++||+ |++ ++
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~~l~~~----~g------------~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---REQITNF----EG------------LNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EEEccCC----CC------------CcCCeEECCCCCEEEEEEc
Confidence            5567889987 5 55543 23578888876432   2222211    01            112467888887 544 33


Q ss_pred             C-CCCEEEEEcCCC
Q 011435          153 T-LNLAIRKIGDAG  165 (486)
Q Consensus       153 ~-~n~rIrkid~~G  165 (486)
                      . ++..|+++|.++
T Consensus       263 ~~g~~~Iy~~d~~~  276 (430)
T PRK00178        263 KDGNPEIYVMDLAS  276 (430)
T ss_pred             cCCCceEEEEECCC
Confidence            2 345788888765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=80.15  E-value=57  Score=34.74  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=38.3

Q ss_pred             eeEEEccCCe-EEE-EEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           78 YKIRVSEDGE-LFA-VDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        78 ~GlAVd~dG~-LYV-aD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ...++++||+ |++ +|. +...|++++.++..   .+.+...        .+        .-...+++++|+ |+++..
T Consensus       293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~--------~~--------~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFG--------GG--------RYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             CceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecC--------CC--------cccCeEECCCCCEEEEEEc
Confidence            3467788887 444 432 23468888876532   2222210        00        112456888887 555543


Q ss_pred             C--CCEEEEEcCCC
Q 011435          154 L--NLAIRKIGDAG  165 (486)
Q Consensus       154 ~--n~rIrkid~~G  165 (486)
                      .  ..+|..++.++
T Consensus       354 ~~~~~~i~~~d~~~  367 (435)
T PRK05137        354 GGGQFSIGVMKPDG  367 (435)
T ss_pred             CCCceEEEEEECCC
Confidence            2  35788888766

>PRK04043 tolB translocation protein TolB; Provisional

Probab=80.12  E-value=56  Score=35.08  Aligned_cols=67  Identities=15%  Similarity=0.073  Sum_probs=37.0

Q ss_pred             EEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE-EeCC
Q 011435           80 IRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV-ADTL  154 (486)
Q Consensus        80 lAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD~~  154 (486)
                      ..+++||. |+++..  ++..|+.++.++..   .+.+...    .+            .-....+++||+ ||+ +|..
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~----~~------------~d~~p~~SPDG~~I~F~Sdr~  298 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNY----PG------------IDVNGNFVEDDKRIVFVSDRL  298 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccC----CC------------ccCccEECCCCCEEEEEECCC
Confidence            46788886 554432  34578888876532   2222211    00            001236888887 544 4433


Q ss_pred             -CCEEEEEcCCC
Q 011435          155 -NLAIRKIGDAG  165 (486)
Q Consensus       155 -n~rIrkid~~G  165 (486)
                       ...|+++|.++
T Consensus       299 g~~~Iy~~dl~~  310 (419)
T PRK04043        299 GYPNIFMKKLNS  310 (419)
T ss_pred             CCceEEEEECCC
Confidence             34788888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	486
3hrp_A	409	Crystal Structure Of Structural Genomics Protein Of		1e-06

>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of Unknown Function (np_812590.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 409

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPP-LSQYSRGRLVAGSFQGYTGHVDGKPNEARFN 135
           PY I    D   +  D+  S++ KITP    ++  G     + Q      DG   EA F 
Sbjct: 270 PYLIYYFVDSNFYXSDQNLSSVYKITPDGECEWFCGSATQKTVQ------DGLREEALFA 323
Query: 136 HPKGVTMDDKGNLYVADTL-NLAIRK--IGDAGVTTIAGGKSNVAGFRDGPSEDAKFSND 192
            P G T+D+ GN Y+ D      +RK  I D  V+T+A G+ +VA   DG   +A F+  
Sbjct: 324 QPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEATFNYP 382
Query: 193 FDVVY 197
           +D+ Y
Sbjct: 383 YDICY 387

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	486
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	5e-14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	9e-32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-06
3kya_A	496	Putative phosphatase; structural genomics, joint c	5e-25
3kya_A	496	Putative phosphatase; structural genomics, joint c	4e-16
3kya_A	496	Putative phosphatase; structural genomics, joint c	3e-04
3kya_A	496	Putative phosphatase; structural genomics, joint c	6e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	1e-12
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	8e-11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	8e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-08
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	7e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	6e-05
2p4o_A	306	Hypothetical protein; putative lactonase, structur	6e-04

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  127 bits (321), Expect = 1e-32
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 16/178 (8%)

Query: 51  ADGNVLQFENGYLVETVIEGNE------IGVVPYKIRVSEDGELFAVDEVNSNIVKITPP 104
           ++ N  +F       T+I+  E          PY I    D   +  D+  S++ KITP 
Sbjct: 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297

Query: 105 LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL-NLAIRKI-- 161
                      GS        DG   EA F  P G+T+D+ GN Y+ D      +RK+  
Sbjct: 298 ----GECEWFCGS-ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352

Query: 162 GDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 219
            D  V+T+AG + +VA   DG   +A F+  +D+          + +    A+R+ ++
Sbjct: 353 LDGYVSTVAG-QVDVASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAV 408

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 18/174 (10%)

Query: 51  ADGNVLQF--ENGYLVETVIEGN-EIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQ 107
               V  +   +G+    + +           + + E  E     + N N  +      +
Sbjct: 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251

Query: 108 YSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-V 166
            +   L+           +   +      P  +      N Y++D    ++ KI   G  
Sbjct: 252 VT---LIKQL--------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC 300

Query: 167 TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-GNAALRQISL 219
               G  +     +DG  E+A F+    +  V    +  ++D      LR++ +
Sbjct: 301 EWFCGS-ATQKTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDI 352

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 36/183 (19%)

Query: 59  ENGYLVETVIEGNEIGVVPYKIRVS----EDGELFAVDEVNSN-IVKITPPLSQYSRGRL 113
           E     + +++G+  G    K++V         L  V  +++N +  + P          
Sbjct: 27  EGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIK 86

Query: 114 V------------------------AGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLY 149
           V                        +GS     G+ DG    A+F +  G+       + 
Sbjct: 87  VIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFKYMWGIAAVGNNTVL 145

Query: 150 VADTLNLAIRKIG-DAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID 208
                +  +R I  D    T         GF+ G     K       +    T ++ V  
Sbjct: 146 AYQRDDPRVRLISVDDNKVTTVHP-----GFKGGKPAVTKDKQRVYSIGWEGTHTVYVYM 200

Query: 209 RGN 211
           + +
Sbjct: 201 KAS 203

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 39/174 (22%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITP-------------------------PLSQYSRG 111
            + I    +  + A    +  +  I+                            S    G
Sbjct: 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEG 192

Query: 112 ---RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG-V 166
                V     G+     G+           V +D+    LY  D+     R       V
Sbjct: 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252

Query: 167 TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220
           T I           +           + + Y     +  + D+  +++ +I+ +
Sbjct: 253 TLIKQL--------ELSGSLGTNPGPYLI-YYFVDSNFYMSDQNLSSVYKITPD 297

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  125 bits (315), Expect = 9e-32
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 52  DGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLS--QY 108
            G V +++      T +   +     + I+    G   + V      I++        + 
Sbjct: 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL 306

Query: 109 SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT---------MDDKGNLYVADTLNLAIR 159
           +   +V G  QG    VDG   +AR + P+  T           D+ + Y  D  N  IR
Sbjct: 307 TTPYIVCGQ-QGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365

Query: 160 KIGDAG-VTTIAG-GKSNVAGFRDG-PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ 216
            +   G VTT AG G +  +G+ DG   ++A+F++   +VY        + DR N  +R+
Sbjct: 366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425

Query: 217 ISLNQ 221
           I   +
Sbjct: 426 IGYEE 430

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 47/176 (26%)

Query: 61  GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSN-IVKITPPLS------------- 106
           G     ++ G   G    KI+V+  G+   V       +  + P  +             
Sbjct: 29  GLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDE 88

Query: 107 -------------QYSRGRLV---AGSFQGYTGH---VDGKPNE-ARFNHPKGVTMDDKG 146
                         Y +  LV    G+           DG  ++   F     ++ D K 
Sbjct: 89  GEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKN 148

Query: 147 N--LYVADTLNLAIRKI--GDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV 198
           +  LY+        R I      V+T+  G S V            ++++ D + +
Sbjct: 149 HNHLYLVGE-QHPTRLIDFEKEYVSTVYSGLSKVRTIC--------WTHEADSMII 195

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  106 bits (266), Expect = 5e-25
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 77  PYKIRVSEDGELFAVDEVNSN-IVKITP--PLSQYSRGRLVAGSFQGYTGHVDGKPNEAR 133
            ++I +   G+      +N++  ++        ++       G +   +G+ D    EAR
Sbjct: 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEAR 370

Query: 134 FNHP--------KGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAG-------GKSNVA 177
            N+P           T +++ + Y  D LN  +RK+   G V+T AG          N  
Sbjct: 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQW 430

Query: 178 GFRDG-PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC 224
           G  DG   E A+F +   +VY        V D+    +R IS+ Q++ 
Sbjct: 431 GTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 80.0 bits (196), Expect = 4e-16
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 75  VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRL--VAGSFQ-------GYTGHV 125
           V        E+ + + VD +N  + K+TP       G +   AG             G  
Sbjct: 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP------EGIVSTYAGRGASTSLADGNQWGTD 433

Query: 126 DGKP-NEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGP 183
           DG     ARF    G+  DD     YV D +   IR I       +AG +       + P
Sbjct: 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE-------NIP 486

Query: 184 SEDAKFSND 192
            +++   ++
Sbjct: 487 EDESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 8/161 (4%)

Query: 51  ADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSR 110
            D  V+  ++ Y+   V  G   G +   +   E+          S   K+        R
Sbjct: 55  KDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENAVTTTASTTFSYEKKMVVGTLCGYR 114

Query: 111 GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN--LYVADTLNLAIRKIGDAG--V 166
                  ++              F+    +  D      LY+    + AI+ I      +
Sbjct: 115 NNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML 174

Query: 167 TTIAG----GKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS 203
           ++         + +         +        ++       
Sbjct: 175 SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 12/172 (6%)

Query: 60  NGYLVETVIEGNEIGV-VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGR--LVAG 116
              ++ + +  N I       I  ++  E +A DE    IV I             ++  
Sbjct: 170 KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGDESPSVYIIKR 228

Query: 117 SFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYVADTLNLAIRKIGDAGV-TTIAGGKS 174
           +  G           A +    G T+    G LY        + ++       TI  G S
Sbjct: 229 NADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288

Query: 175 NVAGFRDGPSED------AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220
                ++ P+        A  S +F +               N    +   +
Sbjct: 289 WDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 34/158 (21%)

Query: 65  ETVIEGNEIGVV--PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYT 122
           +TV+    I     P  + V   G ++   E     V      S  +           + 
Sbjct: 12  QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFN 64

Query: 123 GHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDG 182
           G             P+G+ +D  G +YV D  N  +     +   T+        G  + 
Sbjct: 65  G----------LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----DGL-NY 109

Query: 183 PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220
           P            + V    ++ V DRGN  + +++  
Sbjct: 110 PEG----------LAVDTQGAVYVADRGNNRVVKLAAG 137

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 34/143 (23%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  + V   G ++  D  N+ +VK+               + Q                 
Sbjct: 152 PDGVAVDNSGNVYVTDTDNNRVVKLEA-----------ESNNQVVLP-------FTDITA 193

Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDV 195
           P G+ +D+ G +YV +     + K+      +T+        G  + P            
Sbjct: 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF----TGL-NTPLA---------- 238

Query: 196 VYVRPTCSLLVIDRGNAALRQIS 218
           V V    ++ V DRGN  + +++
Sbjct: 239 VAVDSDRTVYVADRGNDRVVKLT 261

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 52  DGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRG 111
           +  V+    G   +TV+  + +   P  + V   G ++  D  N+ +VK+          
Sbjct: 86  NNRVVTLAAGSNNQTVLPFDGLNY-PEGLAVDTQGAVYVADRGNNRVVKLAA-------- 136

Query: 112 RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI-GDAGVTTIA 170
                  Q               N P GV +D+ GN+YV DT N  + K+  ++    + 
Sbjct: 137 ---GSKTQTVLP-------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL 186

Query: 171 GG 172
             
Sbjct: 187 PF 188

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 35/145 (24%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  + V   G ++  D  N  +                   F G              N+
Sbjct: 69  PQGLAVDGAGTVYVTDFNNRVVTLAAG------SNNQTVLPFDG-------------LNY 109

Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDV 195
           P+G+ +D +G +YVAD  N  + K+       T+        G  + P            
Sbjct: 110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF----TGL-NDPDG---------- 154

Query: 196 VYVRPTCSLLVIDRGNAALRQISLN 220
           V V  + ++ V D  N  + ++   
Sbjct: 155 VAVDNSGNVYVTDTDNNRVVKLEAE 179

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 32/158 (20%)

Query: 35  TSLLKWTTRSSSKAPQ-----ADGNVL--QFENGYLVE-------TVIEGNEIGVVPYKI 80
               ++        P       +G++   Q     + +          +    G  P  I
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFI 151

Query: 81  RVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGV 140
            +  D  L+  +  N++I +IT                   TG ++  P       P G+
Sbjct: 152 TLGSDNALWFTENQNNSIGRITN------------------TGKLEEYPLPTNAAAPVGI 193

Query: 141 TMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAG 178
           T  + G L+  + +   I +I   G  +     +  A 
Sbjct: 194 TSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 28/131 (21%)

Query: 51  ADGNVL--QFENGYLVE-------TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI 101
            DG V   Q +   +            E          + VS  G+++  +   + I K+
Sbjct: 29  EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL 88

Query: 102 TPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           +             G F  Y             + P G+T    G+++        I K+
Sbjct: 89  SK-----------KGGFTEYPLP-------QPDSGPYGITEGLNGDIWFTQLNGDRIGKL 130

Query: 162 GDAG-VTTIAG 171
              G +     
Sbjct: 131 TADGTIYEYDL 141

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 30/140 (21%)

Query: 51  ADGNVL--QFENGYLVE-------TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI 101
           +D  +   + +N  +                    P  I    DG L+ V+ + + I +I
Sbjct: 155 SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214

Query: 102 TPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           T                   TG +           P  +T      ++  +     I +I
Sbjct: 215 TT------------------TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256

Query: 162 GDAGVTT---IAGGKSNVAG 178
            +        +    +   G
Sbjct: 257 TNDNTIQEYQLQTENAEPHG 276

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 15/142 (10%), Positives = 36/142 (25%), Gaps = 32/142 (22%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           PY I  SEDG+++      + I  +                    +G +           
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISSLDQ------------------SGRIKEFEVPTPDAK 63

Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVV 196
              + +   G+++  +     I K+   G  T        +G                 +
Sbjct: 64  VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYG--------------I 109

Query: 197 YVRPTCSLLVIDRGNAALRQIS 218
                  +         + +++
Sbjct: 110 TEGLNGDIWFTQLNGDRIGKLT 131

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 29/120 (24%)

Query: 51  ADGN--VLQFENGYLVE-------TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI 101
            DG    ++     +         +  +       P+ I   ++ E++  +   + I +I
Sbjct: 197 NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256

Query: 102 TPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           T              + Q Y    +          P G+T    G+++ A      I K+
Sbjct: 257 TN-----------DNTIQEYQLQTEN-------AEPHGITFGKDGSVWFALK-C-KIGKL 296

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 20/184 (10%)

Query: 42  TRSSSKAPQADGNVLQF--ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIV 99
            +     P  +  +L     N  ++++   G  +  +P+ + +  DG  +  D     + 
Sbjct: 58  YQQRGLGPIEEDTILVIDPNNAEILQS--SGKNLFYLPHGLSIDTDGNYWVTDVALHQVF 115

Query: 100 KITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD-DKGNLYVADT-LNLA 157
           K+ P        +       G +    G  ++  F  P  V ++   G ++V+D   N  
Sbjct: 116 KLDP------HSKEGPLLILGRSM-QPGS-DQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167

Query: 158 IRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ 216
           I +   +G   T  G +S+            +FS    +  V     L V DR N  ++ 
Sbjct: 168 IVQFSPSGKFVTQWGEESS-----GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222

Query: 217 ISLN 220
              +
Sbjct: 223 FKTD 226

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 15/149 (10%)

Query: 82  VSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGS-------FQGYTGHVDGKPNEARF 134
           +     L      +      +       + R +                 +     +  F
Sbjct: 31  LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF 90

Query: 135 NHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSND 192
             P G+++D  GN +V D     + K+         +  G+S   G     S+   F   
Sbjct: 91  YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-----SDQNHFCQP 145

Query: 193 FDVVYVRPTCSLLVID-RGNAALRQISLN 220
            DV     T ++ V D   N+ + Q S +
Sbjct: 146 TDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 17/94 (18%)

Query: 70  GNEIGVVPYK--IRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDG 127
           G  +  + Y      + +G+ +  D+       +             +G           
Sbjct: 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS----------SGEIIDVFK---- 285

Query: 128 KPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
            P    F+ P  +   + G +Y+ D     + K 
Sbjct: 286 -PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 22/145 (15%)

Query: 77  PYKIRV-SEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN 135
           P+ + +     +L   D  N  I                   F     H     N    +
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQCFKT----------DTKEFVREIKHASFGRNVFAIS 247

Query: 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDV 195
           +  G      G  Y  D   +    +  +    I   K     F D P +          
Sbjct: 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF-DMPHD---------- 296

Query: 196 VYVRPTCSLLVIDRGNAALRQISLN 220
           +      ++ + D     + + +L 
Sbjct: 297 IVASEDGTVYIGDAHTNTVWKFTLT 321

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 12/116 (10%)

Query: 116 GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--------VT 167
             F      +D            GV +D K NL +    +                  + 
Sbjct: 6   HDFH-VEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLG 64

Query: 168 TIAGGKSNVAGFRDGPSEDAKFSNDFDV---VYVRPTCSLLVIDRGNAALRQISLN 220
            I      V    +     +   N F +   + +    +  V D     + ++  +
Sbjct: 65  PIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPH 120

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 66  TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHV 125
                      PY I    +G+++  +   + I +IT             G  + Y    
Sbjct: 90  KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-----------DGKIREYELPN 138

Query: 126 DGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAG 178
            G       ++P  +T+     L+  +  N AI +I ++G  T     +  +G
Sbjct: 139 KG-------SYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASG 184

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 28/131 (21%)

Query: 51  ADGN--VLQFENGYLVE-------TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI 101
             G   + Q +   +         T             + +S DGE++  +   + I +I
Sbjct: 24  DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI 83

Query: 102 TPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           T             G  + YT            + P G+T    G+++  +     I +I
Sbjct: 84  TK-----------KGIIKEYTLPNPD-------SAPYGITEGPNGDIWFTEMNGNRIGRI 125

Query: 162 GDAG-VTTIAG 171
            D G +     
Sbjct: 126 TDDGKIREYEL 136

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 66  TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHV 125
              E    G  P  I +  D  L+  +  N+ I +IT            +G    +    
Sbjct: 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-----------SGDITEFKI-- 178

Query: 126 DGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGG 172
                    + P G+T  +   L+  + +   I +I  +G +T     
Sbjct: 179 -----PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIP 221

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 27/127 (21%)

Query: 51  ADGNVL--QFENGYLVE-------TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI 101
           +D  +   + +N  +         T  +       P  I    D  L+ V+ + + I +I
Sbjct: 150 SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209

Query: 102 TPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
           T                   +G +           P  +T     +L+  +     I ++
Sbjct: 210 TT------------------SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL 251

Query: 162 GDAGVTT 168
               +  
Sbjct: 252 TSNNIIE 258

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 18/102 (17%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           PY I VS+ G+++      + I  I                     G +   P       
Sbjct: 17  PYGITVSDKGKVWITQHKANMISCINL------------------DGKITEYPLPTPDAK 58

Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAG 178
              +T+   G ++  +     I +I   G+       +  + 
Sbjct: 59  VMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSA 100

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 14/87 (16%)

Query: 132 ARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSN 191
            +   P G+T+ DKG +++       I  I   G  T     +  A              
Sbjct: 12  NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMC---------- 61

Query: 192 DFDVVYVRPTCSLLVIDRGNAALRQIS 218
               + +     +   +     + +I+
Sbjct: 62  ----LTISSDGEVWFTENAANKIGRIT 84

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 20/96 (20%)

Query: 66  TVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHV 125
           T  +       P+ I      +L+  +   + I ++T                + Y    
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-----------NNIIEEYPI-- 262

Query: 126 DGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
                + +   P G+  D    ++ A   +  I K+
Sbjct: 263 -----QIKSAEPHGICFDG-ETIWFAMECD-KIGKL 291

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 19/97 (19%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  + V   G +  V+     ++                G+     G             
Sbjct: 123 PRGVTVDNKGRIIVVECKVMRVIIFDQ-----------NGNVLHKFGC------SKHLEF 165

Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG 171
           P GV ++DK  ++++D     ++     G  +  I G
Sbjct: 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 47/164 (28%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  + V++  E+F  D     +            G+ +     G          E   N+
Sbjct: 166 PNGVVVNDKQEIFISDNRAHCVKVFNY------EGQYL-RQIGG----------EGITNY 208

Query: 137 PKGVTMDDKGNLYVADTLNLA-IRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDF 193
           P GV ++  G + +AD  N   +      G  ++ +     +         +        
Sbjct: 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKH-----AQCFD-------- 255

Query: 194 DVVYVRPTCSLLVIDRGNAALR-QISLNQDDCEYQYNSISPTDI 236
             V +    S+++  +     R  I        Y+Y  ++P  +
Sbjct: 256 --VALMDDGSVVLASKDY---RLYI--------YRYVQLAPVGM 286

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 20/87 (22%)

Query: 77  PYKIRVSEDGELFAV--DEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF 134
           P ++ V  +     V        I                        G    K      
Sbjct: 79  PNRVAVVRNSGDIIVTERSPTHQIQIYNQ------------------YGQFVRKFGATIL 120

Query: 135 NHPKGVTMDDKGNLYVADTLNLAIRKI 161
            HP+GVT+D+KG + V +   + +   
Sbjct: 121 QHPRGVTVDNKGRIIVVECKVMRVIIF 147

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)

Query: 77  PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
           P  + V+   ++   D  N  I                 G F+   G       +++  +
Sbjct: 32  PSGVAVNAQNDIIVADTNNHRIQIFDK-----------EGRFKFQFGECG--KRDSQLLY 78

Query: 137 PKGVTMDDKGNL--YVADTLNLAIRKIGDAG--VTTIAGGKSN 175
           P  V +            +    I+     G  V         
Sbjct: 79  PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQ 121

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 131 EARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGV-TTIAGGKSNVAGFRDGPSEDAKF 189
           E +F  P GV ++ + ++ VADT N  I+     G      G           P+  A  
Sbjct: 26  EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV 85

Query: 190 SNDFDVVYV 198
            N  D++  
Sbjct: 86  RNSGDIIVT 94

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 32/130 (24%)

Query: 48  APQADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDG--ELFAVDEVNSNIVKITPPL 105
           A   DG +      ++     E  EI        ++ DG  ++ A  E   + +  T   
Sbjct: 38  ASAPDGTI------FVTN--HEVGEIV------SITPDGNQQIHATVEGKVSGLAFTSN- 82

Query: 106 SQYSRGRLVAGSFQGYTGHV------DGKP----NEARFNHPKGVTMDDKGNLYVADTLN 155
                G LVA  +   +  V      DG               G+T         AD+  
Sbjct: 83  -----GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYR 137

Query: 156 LAIRKIGDAG 165
            AI  I    
Sbjct: 138 GAIWLIDVVQ 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	486
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.83
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.8
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.71
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.54
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.44
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.44
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.4
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.33
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.27
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.24
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.02
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.01
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.98
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.93
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.9
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.88
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.86
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.83
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.71
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.65
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.48
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.48
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.43
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.4
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.3
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.26
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.24
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.23
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.19
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.18
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.09
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.08
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.07
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.06
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.02
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.84
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.77
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.74
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.74
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.67
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.62
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.52
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.48
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.19
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.11
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.09
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.07
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.01
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.97
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.89
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.89
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.78
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.64
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.6
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.47
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.23
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.04
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.89
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.84
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.73
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.53
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.39
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.38
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.14
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.0
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.41
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.21
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.15
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.99
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.86
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.84
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.64
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.63
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.56
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.5
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.43
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.28
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.25
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	92.92
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.84
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	92.79
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.65
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.64
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.61
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.4
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.37
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.23
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	92.05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	91.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	91.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.65
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	91.5
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	91.44
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.43
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.4
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.27
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.24
3ott_A	758	Two-component system sensor histidine kinase; beta	91.02
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	90.83
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.73
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	90.72
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	90.58
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	90.51
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.5
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.46
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.37
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	90.36
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	90.24
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	90.19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	90.17
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	89.99
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	89.76
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.67
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	89.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	89.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	89.04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	88.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	88.48
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	88.37
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	87.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	87.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	87.81
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	87.7
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	87.26
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	87.24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	87.21
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	86.8
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	86.57
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	86.48
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.44
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	86.0
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	85.91
2pm7_B	297	Protein transport protein SEC13, protein transport	85.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.34
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	85.31
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	84.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	84.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	84.33
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	84.22
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	84.18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	84.14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	84.02
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	83.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	83.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	83.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	83.39
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	83.25
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	83.24
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	83.08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	83.01
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	82.7
3jrp_A	379	Fusion protein of protein transport protein SEC13	82.69
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	82.05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	81.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	81.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	81.82
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	80.57
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	80.52
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	80.18

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=2.5e-22  Score=215.05  Aligned_cols=150  Identities=25%  Similarity=0.319  Sum_probs=125.7

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCc--ccccEEEecccCCccccCCCCccccccCCcc-eEEEc-------
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQ--YSRGRLVAGSFQGYTGHVDGKPNEARFNHPK-GVTMD-------  143 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~--~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD-------  143 (486)
                      ..|++|+++++|+ |||+|+.+|+|++++.++..  .....+++|. .|..|+.||.+..++|+.|. |+++|       
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~-~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG-YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB-TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC-CCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            4589999999998 99999999999999877532  1123678886 35677788988999999999 89998       


Q ss_pred             CCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCC-------CCCcCCC-CccccccCCCceeEEEcCC-CeEEEEeCCCCe
Q 011435          144 DKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSN-------VAGFRDG-PSEDAKFSNDFDVVYVRPT-CSLLVIDRGNAA  213 (486)
Q Consensus       144 ~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g-------~~G~~DG-~~~~a~f~~P~gIa~vd~~-G~LYVaD~gn~r  213 (486)
                      .+|+|||||+.|||||+|+++| +++++|....       .+||.|| ++..++|+.|.+|+ ++++ |+|||+|.+|+|
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMFYVHDQVGHT  467 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEEEEEeCCCCE
Confidence            7899999999999999999999 8999987431       1478888 88999999999998 5664 999999999999


Q ss_pred             EEEEECCCCceee
Q 011435          214 LRQISLNQDDCEY  226 (486)
Q Consensus       214 Ir~id~~G~~~~~  226 (486)
                      ||+|+++++.|.-
T Consensus       468 Irki~~~~~~~~~  480 (496)
T 3kya_A          468 IRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEECCCC---
T ss_pred             EEEEECCCCcccc
Confidence            9999999876544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.83  E-value=9.1e-20  Score=191.53  Aligned_cols=143  Identities=22%  Similarity=0.316  Sum_probs=121.4

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCCC--CcccccEEEecccCCccccCCCCccccccCCcceEEE---------c
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPL--SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM---------D  143 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g--~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav---------D  143 (486)
                      .+.+|+++++|+ |||+|..+++|++++.++  .......+++|. .+..|+.||....++|+.|.||++         |
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQ-HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEEC-TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEec-CCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            467899999998 999999999999998763  222345678875 255667778778899999999999         9


Q ss_pred             CCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCC-CCCCcCCC-CccccccCCCceeEEEc-CCCeEEEEeCCCCeEEEEEC
Q 011435          144 DKGNLYVADTLNLAIRKIGDAG-VTTIAGGKS-NVAGFRDG-PSEDAKFSNDFDVVYVR-PTCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       144 ~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~-g~~G~~DG-~~~~a~f~~P~gIa~vd-~~G~LYVaD~gn~rIr~id~  219 (486)
                      .+|+|||||+.|++|++|+++| +.+++|... ...||.|| .+..++|+.|.+|+ ++ ++|+|||+|.+|+||++|++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA-YDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEE-EECCCCEEEEEeCCCCEEEEEec
Confidence            9999999999999999999999 899998632 13678888 78889999999998 56 89999999999999999997


Q ss_pred             C
Q 011435          220 N  220 (486)
Q Consensus       220 ~  220 (486)
                      +
T Consensus       432 e  432 (433)
T 4hw6_A          432 E  432 (433)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.80  E-value=9.4e-19  Score=181.76  Aligned_cols=139  Identities=28%  Similarity=0.419  Sum_probs=119.5

Q ss_pred             ccce-eEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           75 VVPY-KIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        75 ~~P~-GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      ..|. +|++++ +|.|||+|..+++|++++.++.    ..+++|.. +..|+.+|....++|+.|.||++|++|+|||||
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            3477 999999 6899999999999999999853    56777752 245666776678899999999999999999999


Q ss_pred             C-CCCEEEEEc-CCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          153 T-LNLAIRKIG-DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       153 ~-~n~rIrkid-~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      . .+++|++++ .+| +.+++|.. +..|+.||.+..++|+.|.+|+ ++++|+|||+|.+|++|++|+++
T Consensus       341 ~~~~~~I~~~~~~~G~v~~~~g~~-~~~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVSTVAGQV-DVASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTTCEEEEEETTTTEEEEEEECT-TCBSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCEEEEEECCCCEEEEEeCCC-CCCCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence            9 999999999 788 88888753 3467888888889999999998 78889999999999999999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=2.9e-19  Score=187.28  Aligned_cols=144  Identities=27%  Similarity=0.438  Sum_probs=120.2

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCC--cccccEEEecccCCccccCCCCccccccCCcc-eEEE--------
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLS--QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK-GVTM--------  142 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~--~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIav--------  142 (486)
                      ..|.+|+++++|+ |||+|..+++|++++.++.  ......+++|. .+..|+.+|....++|+.|. |+++        
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQ-QGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEC-TTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEecc-CCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            4699999999999 9999999999999988753  22235677775 24556667777788999999 8999        


Q ss_pred             cCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCC-CCCCcCCC-CccccccCCCceeEEEcC-CCeEEEEeCCCCeEEEEE
Q 011435          143 DDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKS-NVAGFRDG-PSEDAKFSNDFDVVYVRP-TCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       143 D~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~-g~~G~~DG-~~~~a~f~~P~gIa~vd~-~G~LYVaD~gn~rIr~id  218 (486)
                      |++|+|||||+.|++|++|+++| +.+++|... +..||.|| .+..++|+.|.+|+ +++ +|.|||+|.+|+||++|+
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEEc
Confidence            46799999999999999999999 888888632 34577787 78889999999998 566 799999999999999999


Q ss_pred             CC
Q 011435          219 LN  220 (486)
Q Consensus       219 ~~  220 (486)
                      ++
T Consensus       428 ~e  429 (430)
T 3tc9_A          428 YE  429 (430)
T ss_dssp             EC
T ss_pred             cC
Confidence            76

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=7.9e-17  Score=172.57  Aligned_cols=140  Identities=15%  Similarity=0.168  Sum_probs=108.1

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCC-------CCcccc---------cEEEecccCCccccCCCCccccccCCc
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPP-------LSQYSR---------GRLVAGSFQGYTGHVDGKPNEARFNHP  137 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~-------g~~~~~---------~~~vaG~~~G~~G~~dG~~~~a~Ln~P  137 (486)
                      ..|.|+++++ +|.|||+|..+++|++++++       +.....         ...+.-.              ..-..|
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--------------~~~~~p  312 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--------------ADPSWE  312 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--------------SSSSCC
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--------------CCCCCc
Confidence            4699999999 78899999999999999986       322100         0011100              012368


Q ss_pred             ceEEEcCCCC-EEEEeCCCCEEEEEcCCC-c------eEEcCCCCCCCCcCCCCccccccCCCceeEEEc-------CCC
Q 011435          138 KGVTMDDKGN-LYVADTLNLAIRKIGDAG-V------TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-------PTC  202 (486)
Q Consensus       138 ~GIavD~dG~-LYVAD~~n~rIrkid~~G-v------~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd-------~~G  202 (486)
                      .+||+|++|+ |||||+.+|+|++++.++ .      ++++|. .+..||.||++..++|+.|.++++++       .+|
T Consensus       313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~-~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g  391 (496)
T 3kya_A          313 FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG-YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY  391 (496)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB-TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE
T ss_pred             eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC-CCCCcccCCcccccccCCCeEEEEEccccccccCCC
Confidence            9999999999 899999999999998776 2      577774 35678889999999999999444466       789


Q ss_pred             eEEEEeCCCCeEEEEECCCCceeeccc
Q 011435          203 SLLVIDRGNAALRQISLNQDDCEYQYN  229 (486)
Q Consensus       203 ~LYVaD~gn~rIr~id~~G~~~~~~~~  229 (486)
                      +|||+|.+|+|||+|+++|...++.+.
T Consensus       392 ~lyVaD~~N~rIr~i~~~G~v~TiaG~  418 (496)
T 3kya_A          392 DFYFVDRLNFCVRKVTPEGIVSTYAGR  418 (496)
T ss_dssp             EEEEEEGGGTEEEEECTTCBEEEEEES
T ss_pred             eEEEEECCCCEEEEEeCCCCEEEEecc
Confidence            999999999999999999865555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.71  E-value=1.7e-16  Score=166.57  Aligned_cols=173  Identities=12%  Similarity=0.089  Sum_probs=124.3

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCccccc-EEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRG-RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV  150 (486)
                      +..|.|+++|+ +|+|||+|..+++|+++++++..   . ..+...  +.            ...+.+|++|++|+ |||
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~---~~~~~~~~--~~------------~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT---LTEEEVMM--DT------------KGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC---EEEEEEEC--SC------------CSSCEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe---EEEEEecc--CC------------CCCcccEEEeCCCCEEEE
Confidence            46799999999 89999999999999999997322   2 222221  00            12467899999998 999


Q ss_pred             EeCCCCEEEEEcCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEE--------cCCCeEEEEeCCCCeEE
Q 011435          151 ADTLNLAIRKIGDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV--------RPTCSLLVIDRGNAALR  215 (486)
Q Consensus       151 AD~~n~rIrkid~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v--------d~~G~LYVaD~gn~rIr  215 (486)
                      +|..+++|++++.++       +.+++|. .+..||.||.+..++|+.|.+|+++        +.+|+|||+|.+|++|+
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQ-HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEEC-TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEec-CCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            999999999998653       2577764 2456888888888999999999843        89999999999999999


Q ss_pred             EEECCCCceeecccCC--CCc--ce-EEEEeeeeecceEeeecc-CCcceEEeecCC
Q 011435          216 QISLNQDDCEYQYNSI--SPT--DI-LMVVGAVLVGYVTCMLQQ-GFGPFFFSRTQQ  266 (486)
Q Consensus       216 ~id~~G~~~~~~~~~~--~~~--~i-~t~~g~~~~Gy~l~l~~~-~~g~~~~a~~~~  266 (486)
                      +|+++|...++.+.+.  ..+  +. ....+.+..+.++|+  + ..|.+++++..+
T Consensus       369 ~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giav--d~~~g~lyVaD~~n  423 (433)
T 4hw6_A          369 VLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAY--DMKRKCFYIGDCDN  423 (433)
T ss_dssp             EECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEE--ETTTTEEEEEEGGG
T ss_pred             EECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEE--ECCCCEEEEEeCCC
Confidence            9999987555554322  000  00 000001122445555  5 677888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.4e-16  Score=165.09  Aligned_cols=172  Identities=12%  Similarity=0.082  Sum_probs=123.1

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      +..|.++++|+ +|.|||+|..+++|+++++++..   ...+...     +         ....|+||++|++|+ |||+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~-----~---------~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTI-----Q---------DSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEEC-----S---------SSSCCEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEc-----C---------CCCcceeEEEcCCCCEEEEE
Confidence            45799999999 89999999999999999998532   2122221     0         123799999999999 9999


Q ss_pred             eCCCCEEEEEcCCC-------ceEEcCCCCCCCCcCCCCccccccCCCc-eeEEE--------cCCCeEEEEeCCCCeEE
Q 011435          152 DTLNLAIRKIGDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDF-DVVYV--------RPTCSLLVIDRGNAALR  215 (486)
Q Consensus       152 D~~n~rIrkid~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~-gIa~v--------d~~G~LYVaD~gn~rIr  215 (486)
                      |..+++|++++.++       +.+++|. .+..||.||....++|+.|. +++ +        |++|+|||+|++|++|+
T Consensus       288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          288 VVNQHYILRSDYDWKTKRLTTPYIVCGQ-QGAKDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEEC-TTCBCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             ECCCCEEEEEeCCcccccccceEEEecc-CCCCCCCCCCCcceEeCCCcceEE-EccccccccCCCCeEEEEECCCcEEE
Confidence            99999999998765       3566664 24567888888889999999 665 5        56799999999999999


Q ss_pred             EEECCCCceeecccCC--CCc--ce-EEEEeeeeecceEeeeccC-CcceEEeecCC
Q 011435          216 QISLNQDDCEYQYNSI--SPT--DI-LMVVGAVLVGYVTCMLQQG-FGPFFFSRTQQ  266 (486)
Q Consensus       216 ~id~~G~~~~~~~~~~--~~~--~i-~t~~g~~~~Gy~l~l~~~~-~g~~~~a~~~~  266 (486)
                      +|+.+|...++.+.+.  ...  +- ....+.+..+.++|+  +. .|.+++++..+
T Consensus       366 ~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav--d~~~g~lyVaD~~n  420 (430)
T 3tc9_A          366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY--DEERECFFIGDREN  420 (430)
T ss_dssp             EECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE--ETTTTEEEEEEGGG
T ss_pred             EECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE--ECCCCEEEEEECCC
Confidence            9999886554443311  100  00 000011224556666  44 57888887754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.1e-14  Score=144.86  Aligned_cols=153  Identities=19%  Similarity=0.355  Sum_probs=109.7

Q ss_pred             CcEEEcc--CCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcc
Q 011435           53 GNVLQFE--NGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPN  130 (486)
Q Consensus        53 gsvv~~~--~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~  130 (486)
                      +.++.+.  .|..+....  ...+..|.||++|++|+|||+|..+++|+++++++.. .....+ +. .+..|.     .
T Consensus        69 ~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~-~~-~~~~g~-----~  138 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSG--KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLIL-GR-SMQPGS-----D  138 (329)
T ss_dssp             CCEEEECTTTCCEEEEEC--TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEE-SB-TTBCCC-----S
T ss_pred             CcEEEEECCCCeEEeccC--CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEe-cc-cCCCCC-----C
Confidence            4454443  455554433  2335679999999999999999999999999998642 112333 22 122221     1


Q ss_pred             ccccCCcceEEEcC-CCCEEEEeC-CCCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC-CeEE
Q 011435          131 EARFNHPKGVTMDD-KGNLYVADT-LNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT-CSLL  205 (486)
Q Consensus       131 ~a~Ln~P~GIavD~-dG~LYVAD~-~n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~-G~LY  205 (486)
                      ...|+.|+||++|+ +|+|||||. .+++|++++.+| + .++.....     . .......|..|.+|+ ++++ |+||
T Consensus       139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~-----~-~~~~~~~~~~p~gia-~d~~~g~l~  211 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESS-----G-SSPRPGQFSVPHSLA-LVPHLDQLC  211 (329)
T ss_dssp             TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECC-----S-SSCCTTEESCEEEEE-EETTTTEEE
T ss_pred             ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCC-----C-CCCCCcccCCCcEEE-EECCCCEEE
Confidence            34688999999999 899999997 799999999999 3 44422110     0 122346789999998 5665 9999


Q ss_pred             EEeCCCCeEEEEECC-CC
Q 011435          206 VIDRGNAALRQISLN-QD  222 (486)
Q Consensus       206 VaD~gn~rIr~id~~-G~  222 (486)
                      |+|.++++|++++.+ |.
T Consensus       212 v~d~~~~~I~~~~~~~G~  229 (329)
T 3fvz_A          212 VADRENGRIQCFKTDTKE  229 (329)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EEECCCCEEEEEECCCCc
Confidence            999999999999998 65

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=2.6e-15  Score=155.85  Aligned_cols=175  Identities=18%  Similarity=0.199  Sum_probs=123.3

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc-eEEEcC-CCCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK-GVTMDD-KGNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD~-dG~LYV  150 (486)
                      +..|.++++++ +|.|||+|. +++|++++.++..   ..++++.  +..|.        .-..|. +|++|+ +|+|||
T Consensus       218 ~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~---~~~~~~~--~~~g~--------~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE---VTLIKQL--ELSGS--------LGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             CSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCC---EEEEEEC--CCCSC--------CCCSSCCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC---EEEEecc--cccCC--------CCCCccccEEEeCCCCEEEE
Confidence            46799999999 899999986 7799999987542   3444432  11110        012377 999999 688999


Q ss_pred             EeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-CCCeEEEEE-CCCCceeec
Q 011435          151 ADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-GNAALRQIS-LNQDDCEYQ  227 (486)
Q Consensus       151 AD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gn~rIr~id-~~G~~~~~~  227 (486)
                      +|..+++|++++.+| +.+++|.. ...|+.||.+..++|..|.+|+ ++++|+|||+|. ++++|++++ .+|...++.
T Consensus       284 ~d~~~~~I~~~~~~g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGECEWFCGSA-TQKTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECT-TCCSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             EeCCCCEEEEEecCCCEEEEEeCC-CCCCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence            999999999999999 77887753 3567888888889999999998 789999999999 999999999 666533333


Q ss_pred             ccCCCCc--ceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          228 YNSISPT--DILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       228 ~~~~~~~--~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      +..+...  +.....+....+.++|+.  ..|.+++++..+
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd--~~g~lyVad~~n  400 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYD--GEGGYWIAEAWG  400 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEEC--SSSEEEEEESTT
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEc--CCCCEEEEECCC
Confidence            2211100  000000002234566664  448888888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.57  E-value=1.6e-13  Score=136.29  Aligned_cols=125  Identities=21%  Similarity=0.283  Sum_probs=95.8

Q ss_pred             CccceeEEEccCCeEEEEECCCC------------------------EEEEEcCCCCcccccEEEecccCCccccCCCCc
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNS------------------------NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKP  129 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~------------------------rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~  129 (486)
                      +..|.|||+|++|+|||+|..++                        +|++++.+..   ......+             
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~-------------   86 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSG-------------   86 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEEC-------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccC-------------
Confidence            45699999999999999999884                        5888887532   2222222             


Q ss_pred             cccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCeE
Q 011435          130 NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCSL  204 (486)
Q Consensus       130 ~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~L  204 (486)
                       ...|+.|.||++|++|+|||+|..+++|++++.+|    +.++...  +..|.     ....|..|.+|+ +++ +|+|
T Consensus        87 -~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~~g~-----~~~~~~~P~~ia-~~~~~g~l  157 (329)
T 3fvz_A           87 -KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS--MQPGS-----DQNHFCQPTDVA-VEPSTGAV  157 (329)
T ss_dssp             -TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT--TBCCC-----STTCCSSEEEEE-ECTTTCCE
T ss_pred             -CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc--CCCCC-----CccccCCCcEEE-EeCCCCeE
Confidence             13478999999999999999999999999999987    2344221  11221     234688999998 676 8999


Q ss_pred             EEEeC-CCCeEEEEECCCCc
Q 011435          205 LVIDR-GNAALRQISLNQDD  223 (486)
Q Consensus       205 YVaD~-gn~rIr~id~~G~~  223 (486)
                      ||+|. ++++|++++.+|..
T Consensus       158 yv~d~~~~~~I~~~~~~g~~  177 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPSGKF  177 (329)
T ss_dssp             EEEECSSCCEEEEECTTSCE
T ss_pred             EEEeCCCCCeEEEEcCCCCE
Confidence            99997 89999999988863

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.54  E-value=4.6e-13  Score=136.07  Aligned_cols=116  Identities=14%  Similarity=0.153  Sum_probs=93.6

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++.+|..   .+++..               ..+..|+||++|+ +|.||++|
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------TTCSCEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---eEEEEe---------------CCCCCcceEEEecCcCeEEEec
Confidence            4799999996 78899999999999999998653   233321               1367899999997 67799999


Q ss_pred             CCC-CEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.+ ++|.+++.+| ..+....              ..+..|+||++...++.|||+|..+++|.+++.+|.
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~~--------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIAD--------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESCC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCEEEEEeCCCCCcEEEEE--------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            998 9999999998 3333221              136789999954478999999999999999999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.53  E-value=5.1e-13  Score=128.25  Aligned_cols=116  Identities=16%  Similarity=0.298  Sum_probs=93.8

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+|++|++|+|||+|..+++|++++.++..    ....+.             ...+..|.+|++|++|+|||+|..
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~----~~~~~~-------------~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV----LHKFGC-------------SKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCE----EEEEEC-------------TTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE----EEEeCC-------------CCccCCcEEEEECCCCCEEEEECC
Confidence            469999999999999999999999999987532    222221             123568999999999999999999


Q ss_pred             CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC-eEEEEECCCC
Q 011435          155 NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA-ALRQISLNQD  222 (486)
Q Consensus       155 n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~-rIr~id~~G~  222 (486)
                      +++|++++.+|  +.++...              ..+..|.+|+ ++++|+|||++..++ +|.+++.+|.
T Consensus       184 ~~~i~~~~~~g~~~~~~~~~--------------g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGGE--------------GITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             GTEEEEEETTCCEEEEESCT--------------TTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             CCEEEEEcCCCCEEEEEccC--------------CccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECCCCC
Confidence            99999999988  4555321              1256799997 788999999999986 9999998875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.51  E-value=8.9e-13  Score=136.62  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=93.7

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++++|..   .++++.               ..+..|.||++|+ +|.||++|
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~---------------~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFR---------------ENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEE---------------CSSCCEEEEEEETTTTEEEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEe---------------CCCCCcceEEEecccCeEEEEe
Confidence            5799999997 78899999999999999998653   233332               1367899999998 67799999


Q ss_pred             CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ++ +++|++++.+|  ..++..               ..+..|+||++...+++|||+|..+++|++++.+|.
T Consensus       221 ~~~~~~I~~~~~dG~~~~~~~~---------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          221 WGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             CSSSCCEEEEETTSCSCEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCEEEEEeCCCCccEEEEE---------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            87 58999999999  344432               136789999955478899999999999999999985

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.50  E-value=9.4e-13  Score=135.54  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++.+|..   .++++.               ..|..|+||++|+ +|.||++|
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~---------------~~l~~P~giavdp~~g~ly~td  220 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEEC---------------SSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeec---------------CCCCCCcEEEEEcCCCeEEEec
Confidence            4799999996 78899999999999999998643   233332               1367899999997 66799999


Q ss_pred             CCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.+ ++|++++.+|  ...+...               .+..|+||++...+++|||+|..+++|++++.+|.
T Consensus       221 ~~~~~~I~r~~~dG~~~~~~~~~---------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          221 WGNTPRIEASSMDGSGRRIIADT---------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             CSSSCEEEEEETTSCSCEEEECS---------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             cCCCCEEEEEeCCCCCcEEEEEC---------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            998 9999999998  3444321               26789999954478999999999999999999974

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.50  E-value=9.2e-13  Score=131.58  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=92.4

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++++|..   .++++.               ..+..|.||++|+ +|.||++|
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~---------------~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFR---------------ENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEE---------------CTTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc---eEEEEE---------------CCCCCcceEEeCCCCCEEEEEc
Confidence            5799999995 78899999999999999998642   233322               1256899999997 77799999


Q ss_pred             CCC-CEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .++ ++|.+++.+| . ..+..               ..+..|++|++...+++||++|..+++|.+++.+|.
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~---------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCeEEEEcCCCCCeEEEEE---------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            986 8999999998 3 33322               136789999954467899999999999999999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.49  E-value=9.3e-13  Score=148.37  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=94.4

Q ss_pred             CccceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435           74 GVVPYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA  151 (486)
                      +..|.|||||.. ++||++|..+++|.+++++|..   .++++.               ..|..|.|||||+ .|.||++
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---~~~l~~---------------~~l~~P~gIaVDp~~g~LYwt  531 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFR---------------ENGSKPRAIVVDPVHGFMYWT  531 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEE---------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---EEEEEe---------------CCCCCcceEEEecCCCCEEEe
Confidence            457999999975 5899999999999999998653   333332               1366899999998 4789999


Q ss_pred             eCCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          152 DTLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       152 D~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |+++ ++|.+++.+|  ..++..               ..|..|+||++...+++|||+|..+++|++++++|.
T Consensus       532 D~g~~~~I~~~~~dG~~~~~lv~---------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          532 DWGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCCeEEEEecCCCceEEEEe---------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            9987 8999999999  344432               236789999955478999999999999999999986

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.48  E-value=9.6e-13  Score=133.68  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             CccceeEEEcc-CCeEEEEECCC-CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVN-SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n-~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      +..|.||++|+ +|.||++|..+ ++|.+++.+|..   .++++.               ..+..|+|||+|+ ++.|||
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~---------------~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIAD---------------THLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEESCC---------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC---cEEEEE---------------CCCCCcceEEEeCCCCEEEE
Confidence            46799999997 78899999998 999999998642   222221               1367899999996 667999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE-CCCC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS-LNQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id-~~G~  222 (486)
                      +|+.+++|++++.+|  ..++...               .+..|.+|++  .++.||++|.++++|.+++ .+|.
T Consensus       220 aD~~~~~I~~~~~dG~~~~~~~~~---------------~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          220 VDAKHHVIERANLDGSHRKAVISQ---------------GLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS---------------SCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCEEEEEeCCCCceEEEEeC---------------CCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCC
Confidence            999999999999988  3444322               2568999985  4689999999999999999 4554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.47  E-value=1.6e-12  Score=131.01  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++++|..   .+++..               ..+..|+||++|+ +|.||++|
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---RKVLFW---------------QELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------SSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---EEEEEe---------------CCCCCccEEEEeCCCCEEEEEe
Confidence            4699999995 78899999999999999998643   233331               1367899999997 67899999


Q ss_pred             CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ++ +++|.+++.+|  ..++..               ..+..|+||++...+++||++|..+++|++++.+|.
T Consensus       141 ~~~~~~I~r~~~dG~~~~~~~~---------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSRFIIIN---------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCEEEEEEcCCCCeEEEEE---------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            86 79999999998  344432               126789999954468999999999999999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.47  E-value=2e-12  Score=142.07  Aligned_cols=114  Identities=13%  Similarity=0.114  Sum_probs=93.9

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. .|+||++|..+++|.+++++|+.   .++++.               ..|..|.|||+|+ +|.||++|
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---~~~l~~---------------~~l~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---RQVLVW---------------KDLDSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---CEEEEC---------------SSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---EEEEEe---------------CCCCCcccEEEccCCCeEEEeC
Confidence            4699999995 67899999999999999998753   233332               1367899999997 78899999


Q ss_pred             CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ++ +++|.+++.+|  ...++.                .+..|+||++...+++||++|..+++|.+++++|.
T Consensus       142 ~g~~~~I~r~~~dG~~~~~l~~----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          142 WGGKPKIDRAAMDGSERTTLVP----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCEEEEEeCCCCceEEEEC----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            87 78999999999  455542                26789999955557899999999999999999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=4.3e-12  Score=121.91  Aligned_cols=115  Identities=20%  Similarity=0.210  Sum_probs=90.2

Q ss_pred             ccceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.+|++|++ |.|||+|..+++|.+++.++..   ...+..               ..+..|+||++|+ +|.|||+|
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~---------------~~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFD---------------TGLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------SSCSSEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---EEEEEE---------------CCCCCccEEEEeeCCCEEEEEE
Confidence            47999999984 7899999999999999998642   223322               1256899999999 57799999


Q ss_pred             CC--CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TL--NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~--n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ..  +++|.+++.+|  ...+..               ..+..|++|++...++.|||+|.++++|.++++++.
T Consensus       141 ~~~~~~~I~~~~~dg~~~~~~~~---------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNRRILAQ---------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEEC---------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CCCCCcEEEEEecCCCCcEEEEE---------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence            87  68999999888  333321               125679999854446799999999999999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.44  E-value=3.4e-12  Score=139.96  Aligned_cols=115  Identities=12%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. .|+||++|..+++|.+++.+|..   .++++.               ..|+.|.+||+|+ +|.||++|
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~---~~~l~~---------------~~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM---RKILIS---------------EDLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------TTCCSEEEEEEETTTTEEEEEE
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---EEEEEE---------------CCCCCeeeEEEEcCCCcEEEec
Confidence            5799999995 78899999999999999998753   234432               1378999999998 58999999


Q ss_pred             CCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +++ .+|.+++.+|  ...+..               ..|..|+||++...+++|||+|.++++|++++++|.
T Consensus       454 ~g~~~~I~r~~~dG~~~~~l~~---------------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          454 WGEIPKIERAALDGSDRVVLVN---------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             CSSSCEEEEEETTSCSCEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             CCCCCEEEEEccCCCccEEEEe---------------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            875 8999999999  344432               237789999955468999999999999999999985

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.44  E-value=4.1e-12  Score=127.92  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=91.2

Q ss_pred             CccceeEEEcc-CCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      +..|.||++|+ +|.||++|.. +++|++++++|..   .++++.               ..+..|+|||+|+ ++.||+
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~---------------~~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIIN---------------SEIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEEC---------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEE---------------CCCCCccEEEEeccCCEEEE
Confidence            45799999997 6889999975 7899999998643   233332               1267899999997 667999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC-CCC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL-NQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~-~G~  222 (486)
                      +|+.+++|++++.+|  ..++..               ..+..|.+|+ ++ .+.||++|.++++|.++++ +|.
T Consensus       183 aD~~~~~I~~~d~dG~~~~~~~~---------------~~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          183 ADAKLNFIHKSNLDGTNRQAVVK---------------GSLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC---------------SCCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCEEEEEcCCCCceEEEec---------------CCCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCC
Confidence            999999999999998  445542               1267899998 45 5799999999999999998 454

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.43  E-value=1e-11  Score=119.15  Aligned_cols=115  Identities=17%  Similarity=0.302  Sum_probs=91.6

Q ss_pred             ccceeEEE-ccCCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           75 VVPYKIRV-SEDGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAV-d~dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      ..|.+|++ +++|+|||++.. +++|++++.++..    ....+.              ..+..|.+|++|++|+|||+|
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~----~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~  138 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF----VRKFGA--------------TILQHPRGVTVDNKGRIIVVE  138 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE----EEEECT--------------TTCSCEEEEEECTTSCEEEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcE----EEEecC--------------ccCCCceEEEEeCCCCEEEEE
Confidence            57999999 589999999975 7899999976432    222221              135689999999999999999


Q ss_pred             CCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ..+++|++++.+|  +.++...              ..+..|.+|+ ++++|+|||+|..+++|++++.++.
T Consensus       139 ~~~~~i~~~~~~g~~~~~~~~~--------------~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~  195 (286)
T 1q7f_A          139 CKVMRVIIFDQNGNVLHKFGCS--------------KHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQ  195 (286)
T ss_dssp             TTTTEEEEECTTSCEEEEEECT--------------TTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCC
T ss_pred             CCCCEEEEEcCCCCEEEEeCCC--------------CccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCC
Confidence            9999999999988  3444211              2356799997 7889999999999999999999875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.42  E-value=5.4e-12  Score=130.70  Aligned_cols=116  Identities=22%  Similarity=0.212  Sum_probs=91.2

Q ss_pred             CccceeEEEcc-CCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      +..|.||++|+ +|.||++|.+ +++|.+++++|..   .++++.               ..|..|+|||+|+ ++.||+
T Consensus       201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~~~---------------~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVT---------------ENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEEEC---------------SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEEEE---------------CCCCceEEEEEEeCCCEEEE
Confidence            45799999997 6889999986 4899999998753   233332               1367899999996 567999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC-CCC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL-NQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~-~G~  222 (486)
                      +|+.+++|++++.+|  ..++...             ...+..|.+|++  .++.||++|.++++|+++++ +|.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~-------------~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILED-------------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEEC-------------SSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESSSCC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeC-------------CCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCC
Confidence            999999999999998  4555422             134778999984  45799999999999999994 453

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.42  E-value=6.4e-12  Score=129.29  Aligned_cols=147  Identities=12%  Similarity=0.096  Sum_probs=107.9

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA  151 (486)
                      +..|.||++|+ +|.||++|..+++|++++++++.   ...++..               .+..|.|||+|. +|+||++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~---------------~~~~p~glavd~~~g~lY~~  176 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVST---------------GLESPGGLAVDWVHDKLYWT  176 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEEECS---------------SCSCCCCEEEETTTTEEEEE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEEEeC---------------CCCCccEEEEEeCCCeEEEE
Confidence            35699999995 78899999999999999998643   3333321               256899999996 6789999


Q ss_pred             eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECCCCceeecc
Q 011435          152 DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLNQDDCEYQY  228 (486)
Q Consensus       152 D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~G~~~~~~~  228 (486)
                      |..+++|.+++.+|  ..++..               ..+..|.+|++...+|.||++|.++ ++|.+++++|...    
T Consensus       177 d~~~~~I~~~~~dg~~~~~l~~---------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----  237 (386)
T 3v65_B          177 DSGTSRIEVANLDGAHRKVLLW---------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----  237 (386)
T ss_dssp             ETTTTEEEECBTTSCSCEEEEC---------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----
T ss_pred             cCCCCeEEEEeCCCCceEEeec---------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----
Confidence            99999999999998  334432               2367899998544688999999998 9999999998522    


Q ss_pred             cCCCCcceEEEEee-eeecceEeeeccCCcceEEeecCC
Q 011435          229 NSISPTDILMVVGA-VLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       229 ~~~~~~~i~t~~g~-~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                              .+++.. +..+.++++.. ..+.++.++...
T Consensus       238 --------~~~~~~~~~~PnGlavd~-~~~~lY~aD~~~  267 (386)
T 3v65_B          238 --------RIIADTHLFWPNGLTIDY-AGRRMYWVDAKH  267 (386)
T ss_dssp             --------EEEECSSCSCEEEEEEEG-GGTEEEEEETTT
T ss_pred             --------EEEEECCCCCeeeEEEeC-CCCEEEEEECCC
Confidence                    222222 22456666642 345677776543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.40  E-value=2e-11  Score=121.88  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=103.2

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcc-cccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQY-SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~-~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      +..|.||++|+ ++.||++|..+++|++++.++... .....+..               ..+..|.|||+|. +|+|||
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~---------------~~~~~p~glavd~~~~~ly~   93 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---------------RDIQAPDGLAVDWIHSNIYW   93 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---------------SSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe---------------CCCCCcCEEEEeecCCeEEE
Confidence            34699999997 578999999999999999875210 01122221               1366899999996 678999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECCCCceeec
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLNQDDCEYQ  227 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~G~~~~~~  227 (486)
                      +|..+++|.+++.+|  ..++..               ..+..|.+|++...+|.||++|.++ ++|.+++++|..... 
T Consensus        94 ~d~~~~~I~~~~~~g~~~~~~~~---------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-  157 (316)
T 1ijq_A           94 TDSVLGTVSVADTKGVKRKTLFR---------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-  157 (316)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEE---------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-
T ss_pred             EECCCCEEEEEeCCCCceEEEEE---------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-
Confidence            999999999999998  344432               1256899998433589999999986 899999999853221 


Q ss_pred             ccCCCCcceEEEE-eeeeecceEeeeccCCcceEEeecC
Q 011435          228 YNSISPTDILMVV-GAVLVGYVTCMLQQGFGPFFFSRTQ  265 (486)
Q Consensus       228 ~~~~~~~~i~t~~-g~~~~Gy~l~l~~~~~g~~~~a~~~  265 (486)
                                 ++ ..+..+.++++.. ..+.++.++..
T Consensus       158 -----------~~~~~~~~P~gla~d~-~~~~lY~~D~~  184 (316)
T 1ijq_A          158 -----------LVTENIQWPNGITLDL-LSGRLYWVDSK  184 (316)
T ss_dssp             -----------EECSSCSCEEEEEEET-TTTEEEEEETT
T ss_pred             -----------EEECCCCCceEEEEec-cCCEEEEEECC
Confidence                       11 1223455666642 34566666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=1.7e-11  Score=115.75  Aligned_cols=114  Identities=20%  Similarity=0.329  Sum_probs=89.9

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+|++|++|+|||+|. +++|+++++++..   ...+..               ..+..|.+|++|++|+|||+|..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~~~~~---------------~~~~~p~~i~~~~~g~l~v~~~~  127 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QTVLPF---------------DGLNYPEGLAVDTQGAVYVADRG  127 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CEECCC---------------CSCSSEEEEEECTTCCEEEEEGG
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---Eeeeec---------------CCcCCCcceEECCCCCEEEEECC
Confidence            5799999999999999998 8899999988543   111111               12557999999999999999999


Q ss_pred             CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          155 NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       155 n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +++|.+++... .......              ..+..|.+|+ ++++|+|||++..+++|.+++.++.
T Consensus       128 ~~~i~~~~~~~~~~~~~~~--------------~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          128 NNRVVKLAAGSKTQTVLPF--------------TGLNDPDGVA-VDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             GTEEEEECTTCCSCEECCC--------------CSCCSCCCEE-ECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             CCEEEEEECCCceeEeecc--------------ccCCCceeEE-EeCCCCEEEEECCCCEEEEEecCCC
Confidence            99999997655 2222111              1256789997 7889999999999999999999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.40  E-value=6.9e-12  Score=137.51  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. +|+||++|..+++|.+++.+|..   .++++.               ..|+.|.|||+|+ +|.||++|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~---~~~l~~---------------~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---RKVLFW---------------QELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------SSCSCCCCEEEETTTTEEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC---EEEEEe---------------CCCCCCceEEEecCCCeEEEec
Confidence            4699999998 67899999999999999999753   334432               1377899999998 57799999


Q ss_pred             CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ++ +.+|.+++.+|  ..++...               .+..|+||++...+++|||+|..+++|++++.+|.
T Consensus       146 ~g~~~~I~r~~~dG~~~~~l~~~---------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          146 WGEVPKIERAGMDGSSRFIIINS---------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CSSSCEEEEEETTSCSCEEEECS---------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             cCCCCEEEEEECCCCceEEEEeC---------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            87 67999999999  4444321               36789999965568999999999999999999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.39  E-value=1.5e-11  Score=118.08  Aligned_cols=113  Identities=14%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             cceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC-CCEEEEeC
Q 011435           76 VPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVAD~  153 (486)
                      .|+|+++|+ ++.||++|..+++|.+++.++..   ...+..               ..+..|.||++|++ |+|||+|.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~---------------~~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIR---------------QDLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEEC---------------TTCCCEEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEE---------------CCCCCccEEEEEecCCeEEEEEC
Confidence            589999998 57899999999999999998643   223322               12568999999984 67999999


Q ss_pred             CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCeEEEEeCC--CCeEEEEECCCC
Q 011435          154 LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCSLLVIDRG--NAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~LYVaD~g--n~rIr~id~~G~  222 (486)
                      .+++|.+++.+|  ...+...               .+..|.+|+ +++ +|.|||+|.+  +++|.+++.+|.
T Consensus        99 ~~~~I~~~~~~g~~~~~~~~~---------------~~~~P~~i~-vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           99 QLDRIEVAKMDGTQRRVLFDT---------------GLVNPRGIV-TDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             TTTEEEEEETTSCSCEEEECS---------------SCSSEEEEE-EETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CCCEEEEEEcCCCCEEEEEEC---------------CCCCccEEE-EeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            999999999988  3344321               256799998 555 7999999987  789999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.38  E-value=9.4e-12  Score=117.60  Aligned_cols=146  Identities=16%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+|++|++|+|||+|..+++|++++..+..    .....              ...+..|.+|++|++|+|||+|..
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~~~~~--------------~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLP--------------FTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS----CEECC--------------CCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCce----eEeec--------------cccCCCceeEEEeCCCCEEEEECC
Confidence            569999999999999999999999999754221    11111              123568999999999999999999


Q ss_pred             CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCCC
Q 011435          155 NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISP  233 (486)
Q Consensus       155 n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~~  233 (486)
                      +++|.+++.++ .......              ..+..|.+|+ ++++|+|||++..+++|.+++.++.......     
T Consensus       170 ~~~i~~~~~~~~~~~~~~~--------------~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-----  229 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPF--------------TDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----  229 (270)
T ss_dssp             GTEEEEECTTTCCEEECCC--------------SSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECC-----
T ss_pred             CCEEEEEecCCCceEeecc--------------cCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeec-----
Confidence            99999999887 2222111              1246789997 7889999999999999999999875322210     


Q ss_pred             cceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          234 TDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       234 ~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                            ........++++  +..|.++++....
T Consensus       230 ------~~~~~~p~~i~~--~~~g~l~v~~~~~  254 (270)
T 1rwi_B          230 ------FTGLNTPLAVAV--DSDRTVYVADRGN  254 (270)
T ss_dssp             ------CCSCSCEEEEEE--CTTCCEEEEEGGG
T ss_pred             ------cCCCCCceeEEE--CCCCCEEEEECCC
Confidence                  011112344555  4455688777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.36  E-value=1.7e-11  Score=138.11  Aligned_cols=119  Identities=16%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcc-cccEEEecccCCccccCCCCccccccCCcceEEEcCCC-CEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQY-SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~-~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYV  150 (486)
                      +..|.+|++|. ++.||++|..+++|++++.++... +...+++.               ..|..|.|||||..| +|||
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---------------~~l~~P~GLAvD~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---------------RDIQAPDGLAVDWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---------------SSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---------------cCCCCcceeeeeecCCcEEE
Confidence            35799999997 688999999999999999885321 12233333               136789999999755 7999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECCCC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLNQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~G~  222 (486)
                      +|..+++|++++.+|  ..+++.               ..|..|.+||+....|.|||+|.++ ++|.+++++|.
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~---------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFR---------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEE---------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             EecCCCeEEEEeCCCCeEEEEEe---------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            999999999999999  344432               2367799998544569999999987 89999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=9.1e-11  Score=111.51  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ...|.+|++|++|+|||++..++.|++++.++.    ...+..              ...+..|.+|++|++|+|||++.
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~--------------~~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNTGK----LEEYPL--------------PTNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTTCC----EEEEEC--------------SSTTCCEEEEEECTTSSEEEEET
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCCCc----EEEeeC--------------CCCCCCcceEEECCCCCEEEEcc
Confidence            357999999999999999999999999998642    222221              11245799999999999999999


Q ss_pred             CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435          154 LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC  224 (486)
Q Consensus       154 ~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~  224 (486)
                      .+++|.+++.+| +..+...              ..+..|.+|+ ++++|+|||++.++++|.++++++...
T Consensus       207 ~~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDIP--------------TPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQ  263 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECS--------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCEEEEEcCCCcEEEEECC--------------CCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEE
Confidence            999999999977 4444221              1245788997 788999999999999999999976533

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.34  E-value=3.3e-11  Score=132.36  Aligned_cols=145  Identities=13%  Similarity=0.140  Sum_probs=108.5

Q ss_pred             CccceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435           74 GVVPYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA  151 (486)
                      +..|.|||+|.. ++||++|..+++|.+++.+|..   ..++..               ..++.|.+||+|+ +|.||++
T Consensus       388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~---~~~l~~---------------~~l~~Pr~iavdp~~g~ly~t  449 (628)
T 4a0p_A          388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS---VGVVLK---------------GEQDRPRAVVVNPEKGYMYFT  449 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE---EEEEEE---------------CTTCCEEEEEEETTTTEEEEE
T ss_pred             cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe---EEEEEe---------------CCCCceeeEEEecCCCeEEEe
Confidence            457999999985 6799999999999999998642   223322               1367899999999 8999999


Q ss_pred             eCCCC--EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeec
Q 011435          152 DTLNL--AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQ  227 (486)
Q Consensus       152 D~~n~--rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~  227 (486)
                      |++++  +|.+++.+|  ..++...               .+..|++|++...+++||++|..+++|.+++++|..... 
T Consensus       450 D~g~~~~~I~r~~~dG~~~~~l~~~---------------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~-  513 (628)
T 4a0p_A          450 NLQERSPKIERAALDGTEREVLFFS---------------GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV-  513 (628)
T ss_dssp             EEETTEEEEEEEETTSCSCEEEECS---------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred             ecCCCCCeEEEEeCCCCCcEEEEec---------------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEE-
Confidence            99877  799999999  4445331               367899999655578999999999999999999853222 


Q ss_pred             ccCCCCcceEEEE-eeeeecceEeeeccCCcceEEeecCC
Q 011435          228 YNSISPTDILMVV-GAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       228 ~~~~~~~~i~t~~-g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                                 +. +.+..++++|+.  + +.++.++..+
T Consensus       514 -----------~~~~~~~~P~glav~--~-~~ly~tD~~~  539 (628)
T 4a0p_A          514 -----------LEDSNILQPVGLTVF--E-NWLYWIDKQQ  539 (628)
T ss_dssp             -----------EECSSCSCEEEEEEE--T-TEEEEEETTT
T ss_pred             -----------EEcCCCCCcEEEEEE--C-CEEEEEECCC
Confidence                       22 122234556653  3 6788887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=1.8e-10  Score=109.50  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=92.2

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+|++|++|+|||++..++.|+++++++.    ...+...              ..+..|.+|++|++|+|||++..
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTADGT----IYEYDLP--------------NKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTTSC----EEEEECS--------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCCCC----EEEccCC--------------CCCCCceeEEECCCCCEEEEecC
Confidence            56999999999999999998899999998732    2222210              12457999999999999999999


Q ss_pred             CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          155 NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       155 n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                      +++|.+++.++ +..+...              ..+..|.+|+ ++++|+|||++..+++|.+++.++..
T Consensus       166 ~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~  220 (300)
T 2qc5_A          166 NNSIGRITNTGKLEEYPLP--------------TNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEI  220 (300)
T ss_dssp             TTEEEEECTTCCEEEEECS--------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred             CCeEEEECCCCcEEEeeCC--------------CCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcE
Confidence            99999999977 4444321              1245788997 78899999999999999999997653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.33  E-value=3.2e-11  Score=119.16  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=89.2

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.||++++ +|+|||+|.. +.|+++++++.   ..+.++...       +    ...++.|++|++|+ +|+|||+|
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g---~~~~~~~~~-------~----~~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGG---HATQLATSV-------D----GVPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTCE---ECEEEESEE-------T----TEECSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCC---EEEEecccC-------C----CCcccccceEEEecCCCEEEEEC
Confidence            4699999997 8999999986 46999998743   244454321       1    13477899999999 99999999


Q ss_pred             CCC-----------------CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCC
Q 011435          153 TLN-----------------LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNA  212 (486)
Q Consensus       153 ~~n-----------------~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~  212 (486)
                      ..+                 ++|.++|+++  +..+..                .+..|++|+ ++++| .|||+|..++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------------~~~~p~gia-~~~dg~~lyv~d~~~~  207 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK----------------ELHVPGGAE-VSADSSFVLVAEFLSH  207 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE----------------EESCCCEEE-ECTTSSEEEEEEGGGT
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEecc----------------CCccCcceE-ECCCCCEEEEEeCCCC
Confidence            763                 6799999864  444432                256799998 67776 5999999999


Q ss_pred             eEEEEECCCC
Q 011435          213 ALRQISLNQD  222 (486)
Q Consensus       213 rIr~id~~G~  222 (486)
                      +|++|+.++.
T Consensus       208 ~I~~~~~~~~  217 (322)
T 2fp8_A          208 QIVKYWLEGP  217 (322)
T ss_dssp             EEEEEESSST
T ss_pred             eEEEEECCCC
Confidence            9999999863

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.27  E-value=6.9e-10  Score=105.35  Aligned_cols=116  Identities=17%  Similarity=0.224  Sum_probs=91.4

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ...|.+|++|++|.|||++..++.|.++++++.    ...+...              .....|.+|++|++|+|||++.
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~----~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITDDGK----IREYELP--------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEECS--------------STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECCCCC----EEEecCC--------------CCCCCCceEEEcCCCCEEEEeC
Confidence            357999999999999999998899999998532    2332211              1234799999999999999999


Q ss_pred             CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          154 LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .++.|.+++.+| +..+...              ..+..|.+++ ++++|+|||++..+++|.++++++.
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~--------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~  214 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIP--------------TPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGE  214 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS--------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCC
T ss_pred             CCCEEEEEcCCCcEEEeeCC--------------CCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCc
Confidence            889999999977 5444221              1245688997 7888999999999999999999664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.27  E-value=1.2e-11  Score=137.23  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             ccceeEEEc-cCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVS-EDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd-~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+| .+|+|||+|..+++|.++++++..   .++++.               ..+..|.||++|+ .|.||++|
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~---------------~~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFR---------------EQGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---EEEECC---------------CSSCCCCCEECCSSSSCCEECC
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---eEEEEe---------------CCCCCcceEEEccCCCcEEEcc
Confidence            469999999 478899999999999999998642   233332               1256899999998 67899999


Q ss_pred             CCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +++ ++|.+++.+|  ..++..               ..|..|+||++...+++|||+|..+++|.+++++|.
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~~---------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEESC---------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             cCCCCeEEEEeCCCCCeeEEEe---------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            876 8999999988  334432               236789999843356899999999999999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.24  E-value=1.1e-09  Score=104.08  Aligned_cols=115  Identities=19%  Similarity=0.210  Sum_probs=91.1

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+|++|++|+|||++..+++|+++++++.    ...+...              .....|.+|++|++|+|||++..
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~~  118 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI----IKEYTLP--------------NPDSAPYGITEGPNGDIWFTEMN  118 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEECS--------------STTCCEEEEEECTTSCEEEEETT
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCCc----EEEEeCC--------------CcCCCceeeEECCCCCEEEEecC
Confidence            56999999999999999998899999998732    3333210              12347999999999999999998


Q ss_pred             CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          155 NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       155 n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ++.|.++|++| +..+...              .....|.+++ .+++|+|||++..++.|.+++.++.
T Consensus       119 ~~~i~~~d~~g~~~~~~~~--------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~  172 (299)
T 2z2n_A          119 GNRIGRITDDGKIREYELP--------------NKGSYPSFIT-LGSDNALWFTENQNNAIGRITESGD  172 (299)
T ss_dssp             TTEEEEECTTCCEEEEECS--------------STTCCEEEEE-ECTTSCEEEEETTTTEEEEECTTCC
T ss_pred             CceEEEECCCCCEEEecCC--------------CCCCCCceEE-EcCCCCEEEEeCCCCEEEEEcCCCc
Confidence            99999999977 4444321              1134688997 7889999999999999999999664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.23  E-value=1.3e-10  Score=114.64  Aligned_cols=117  Identities=13%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ..|.||++++||+ |||+|..+++|++++.++...+...+++.                 +..|.||++|++|+||||+.
T Consensus       185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------~~gP~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------IPNPGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------CSSEEEEEECTTSCEEEEEE
T ss_pred             ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------CCCCCCeEECCCCCEEEEec
Confidence            5799999999987 99999999999999987533222222221                 11299999999999999997


Q ss_pred             C----------CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          154 L----------NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       154 ~----------n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .          +++|.+||++|  +..+...        +|    ..+..|.+++.  .+|+|||++..+++|.+++++.
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~--------~g----~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNILEVIPLP--------PP----FAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEEEEEECC--------TT----TTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred             CcccccccCCCccEEEEECCCCCEEEEEECC--------CC----CccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence            6          57899999999  3444321        11    12677888863  4789999999999999999875


Q ss_pred             C
Q 011435          222 D  222 (486)
Q Consensus       222 ~  222 (486)
                      .
T Consensus       314 ~  314 (322)
T 2fp8_A          314 K  314 (322)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=3.9e-10  Score=109.00  Aligned_cols=128  Identities=14%  Similarity=0.096  Sum_probs=96.2

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK  138 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~  138 (486)
                      .+..++.+..+.   ..|+|+++|++|+ ||++|..+++|+++++++.    ...+...                ...|.
T Consensus        16 ~~~~~~~l~~~~---~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~----------------~~~~~   72 (296)
T 3e5z_A           16 AGAEARRLADGF---TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHP----------------SHHQN   72 (296)
T ss_dssp             TTCCCEEEECCC---SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESS----------------CSSEE
T ss_pred             CCCcEEEEecCC---ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECC----------------CCCcc
Confidence            444555555543   3589999999998 9999999999999999753    2333321                23689


Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-------
Q 011435          139 GVTMDDKGNLYVADTLNLAIRKIGD-AG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-------  209 (486)
Q Consensus       139 GIavD~dG~LYVAD~~n~rIrkid~-~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~-------  209 (486)
                      +|++|++|+|||++..+++|.++|. +| +..+....           ....+..|++++ ++++|+|||+|.       
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-----------~~~~~~~~~~i~-~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF-----------EGKKLNSPNDVC-LAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE-----------TTEECCCCCCEE-ECTTSCEEEEECSHHHHCG
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc-----------CCCCCCCCCCEE-ECCCCCEEEECCccccccc
Confidence            9999999999999998899999998 66 55554321           113456789997 789999999976       


Q ss_pred             ----------CCCeEEEEECCCC
Q 011435          210 ----------GNAALRQISLNQD  222 (486)
Q Consensus       210 ----------gn~rIr~id~~G~  222 (486)
                                ..++|.+++.++.
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~g~  163 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPDGT  163 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTTSC
T ss_pred             cccccccccCCCcEEEEECCCCC
Confidence                      2468999998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.20  E-value=8e-11  Score=130.67  Aligned_cols=114  Identities=23%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             CccceeEEEcc-CCeEEEEECCC-CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC-CCEEE
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVN-SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYV  150 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n-~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYV  150 (486)
                      +..|.|||+|+ +|.||++|..+ ++|.+++++|..   .++++.               ..|..|+|||+|++ +.|||
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVT---------------ENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESC---------------SSCSSCCCEEECTTTCCEEE
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEe---------------CCCCCccEEEEeccCCEEEE
Confidence            45799999998 57899999876 899999988642   122221               13678999999974 67999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      +|..+++|++++.+|  ..+++..             ...+..|.+|+ ++. +.|||+|..+++|+++++.
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~-------------~~~~~~P~gla-vd~-~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILED-------------EKRLAHPFSLA-VFE-DKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCC-------------SSSCSSCCCCE-EET-TEEEEECSTTTCEEEEETT
T ss_pred             EecCCCeEEEEccCCCceEEEEec-------------CCcCCCceEeE-EEC-CEEEEEeCCCCeEEEEEcc
Confidence            999999999999988  4555431             13467899998 454 4899999999999999975

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.18  E-value=3e-10  Score=111.84  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|+|+++|++|+|||+|..+++|+++++++.    ...++..    .            ..|.||+++++|+|||||..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----~~~~~~~----~------------~~p~gia~~~dG~l~vad~~   91 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATV----E------------GKVSGLAFTSNGDLVATGWN   91 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEEC----S------------SEEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----eEEEEeC----C------------CCceeEEEcCCCcEEEEecc
Confidence            35999999999999999999999999999853    2333321    0            15999999999999999976


Q ss_pred             CC--EEEEEc-CCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          155 NL--AIRKIG-DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~--rIrkid-~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++  +|.+++ .+| +..++...              ....|++++ +..++.+||+|..+++|++++..+
T Consensus        92 ~~~~~v~~~d~~~g~~~~~~~~~--------------~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           92 ADSIPVVSLVKSDGTVETLLTLP--------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECT--------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcceEEEEcCCCCeEEEEEeCC--------------CccccCccc-ccCCCcEEEEECCCCeEEEEeCCC
Confidence            54  588887 455 66555321              123467776 567889999999999999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=6.7e-10  Score=108.75  Aligned_cols=126  Identities=12%  Similarity=0.111  Sum_probs=96.9

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK  138 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~  138 (486)
                      .+..++.+.++..   .++|++++++|+ ||++|..+++|+++++++.    ...+...                -+.|+
T Consensus        33 ~~~~~~~l~~~~~---~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----~~~~~~~----------------~~~~~   89 (305)
T 3dr2_A           33 GDARLLTLYDQAT---WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----VDVLLDA----------------TAFTN   89 (305)
T ss_dssp             TTCCCEEEECCCS---SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----EEEEEES----------------CSCEE
T ss_pred             CCCceEEEecCCc---CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----EEEEeCC----------------CCccc
Confidence            4556677777644   589999999998 9999999999999998642    3333321                12689


Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC--------
Q 011435          139 GVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR--------  209 (486)
Q Consensus       139 GIavD~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~--------  209 (486)
                      |+++|++|+|||++..+++|.+++.+| ++.++...           ....++.|++++ ++++|+|||+|.        
T Consensus        90 gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~-----------~~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           90 GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY-----------AGKRLNSPNDLI-VARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEE-----------TTEECSCCCCEE-ECTTSCEEEECCSGGGSCGG
T ss_pred             eeeECCCCCEEEEECCCCEEEEECCCCCEEEEEecc-----------CCCccCCCCCEE-ECCCCCEEEeCcCCCccccc
Confidence            999999999999999889999999988 66554321           113467899997 799999999985        


Q ss_pred             ---------CCCeEEEEECC
Q 011435          210 ---------GNAALRQISLN  220 (486)
Q Consensus       210 ---------gn~rIr~id~~  220 (486)
                               ..+.|.+++++
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSS
T ss_pred             cccccccccCCCeEEEEcCC
Confidence                     23678999885

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.16  E-value=2.6e-09  Score=103.11  Aligned_cols=115  Identities=20%  Similarity=0.284  Sum_probs=89.2

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC-
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT-  153 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-  153 (486)
                      ..|.+|+++++|+|||++..+++|.++++...   ....+....           ....++.|++|++|++|+|||+|. 
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g---~~~~~~~~~-----------~~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGG---EWESIADSF-----------EGKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECSTTC---CEEEEECEE-----------TTEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCCCC---cEEEEeecc-----------CCCCCCCCCCEEECCCCCEEEECCc
Confidence            45899999999999999998899999998432   334443321           012467899999999999999985 


Q ss_pred             ----------------CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEE
Q 011435          154 ----------------LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ  216 (486)
Q Consensus       154 ----------------~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~  216 (486)
                                      ..++|++++++| +..+...                +..|++++ .+++|+++|++..+++|++
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~----------------~~~~~gi~-~s~dg~~lv~~~~~~~i~~  197 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD----------------RVKPNGLA-FLPSGNLLVSDTGDNATHR  197 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC----------------CSSEEEEE-ECTTSCEEEEETTTTEEEE
T ss_pred             cccccccccccccccCCCcEEEEECCCCCEEEeecC----------------CCCCccEE-ECCCCCEEEEeCCCCeEEE
Confidence                            246899999887 5555432                45688998 6888877799999999999


Q ss_pred             EECC
Q 011435          217 ISLN  220 (486)
Q Consensus       217 id~~  220 (486)
                      ++.+
T Consensus       198 ~~~~  201 (296)
T 3e5z_A          198 YCLN  201 (296)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.15  E-value=1.7e-09  Score=105.80  Aligned_cols=115  Identities=12%  Similarity=0.261  Sum_probs=88.4

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC-
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT-  153 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~-  153 (486)
                      ..|.++++|++|+||+++..+++|.+++.++    ..+.++....           ...++.|++|++|++|+|||+|. 
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g----~~~~~~~~~~-----------~~~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADG----QAHLLVGRYA-----------GKRLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEECEET-----------TEECSCCCCEEECTTSCEEEECCS
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCC----CEEEEEeccC-----------CCccCCCCCEEECCCCCEEEeCcC
Confidence            4589999999999999999889999999874    3445543211           12478899999999999999984 


Q ss_pred             ----------------CCCEEEEEcCC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCC---
Q 011435          154 ----------------LNLAIRKIGDA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGN---  211 (486)
Q Consensus       154 ----------------~n~rIrkid~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn---  211 (486)
                                      ..+.|++++++ | +..+. .                +..|++++ .+++| .|||+|..+   
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----------------~~~p~gl~-~spdg~~lyv~~~~~~~~  212 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----------------LDHPNGLA-FSPDEQTLYVSQTPEQGH  212 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----------------ESSEEEEE-ECTTSSEEEEEECCC---
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----------------CCCCcceE-EcCCCCEEEEEecCCcCC
Confidence                            13679999984 4 55543 2                45689998 56666 599999974   


Q ss_pred             --CeEEEEECCCC
Q 011435          212 --AALRQISLNQD  222 (486)
Q Consensus       212 --~rIr~id~~G~  222 (486)
                        ++|++++.++.
T Consensus       213 ~~~~i~~~~~~~~  225 (305)
T 3dr2_A          213 GSVEITAFAWRDG  225 (305)
T ss_dssp             CCCEEEEEEEETT
T ss_pred             CCCEEEEEEecCC
Confidence              89999998753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.15  E-value=1.3e-09  Score=106.40  Aligned_cols=115  Identities=10%  Similarity=0.100  Sum_probs=86.4

Q ss_pred             CccceeEEEccCCeEEEEEC-----------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE
Q 011435           74 GVVPYKIRVSEDGELFAVDE-----------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM  142 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~-----------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav  142 (486)
                      ...|+++++|++|+|||++.           ..+.|+++++++.    ...+..                .+..|+||++
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~~~~~~----------------~~~~pngi~~  156 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH----VKKYFD----------------QVDISNGLDW  156 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC----EEEEEE----------------EESBEEEEEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC----EEEEee----------------ccccccceEE
Confidence            45689999999999999984           3458999998742    333332                2457999999


Q ss_pred             cCCCC-EEEEeCCCCEEEEEcC---CC-ce---EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435          143 DDKGN-LYVADTLNLAIRKIGD---AG-VT---TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL  214 (486)
Q Consensus       143 D~dG~-LYVAD~~n~rIrkid~---~G-v~---tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI  214 (486)
                      +++|+ |||+|+.+++|++++.   +| +.   .++.-.             .....|.+++ +|++|+|||++.++++|
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-------------~~~~~p~g~~-~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-------------KEEQIPDGMC-IDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-------------GGGCEEEEEE-EBTTSCEEEEEETTTEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-------------CCCCCCCeeE-ECCCCCEEEEEcCCCEE
Confidence            99997 9999999999999974   34 21   121100             0123588997 79999999999999999


Q ss_pred             EEEECC-CC
Q 011435          215 RQISLN-QD  222 (486)
Q Consensus       215 r~id~~-G~  222 (486)
                      .+++++ |.
T Consensus       223 ~~~d~~tG~  231 (297)
T 3g4e_A          223 IRLDPVTGK  231 (297)
T ss_dssp             EEECTTTCC
T ss_pred             EEEcCCCce
Confidence            999997 64

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.13  E-value=5.2e-10  Score=113.74  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             ccceeEEEccC----CeEEEEECCC-----CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC
Q 011435           75 VVPYKIRVSED----GELFAVDEVN-----SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK  145 (486)
Q Consensus        75 ~~P~GlAVd~d----G~LYVaD~~n-----~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d  145 (486)
                      ..|.||++++|    |.|||++..+     ++|.+++.++......+++.......         ....+.|.+|+++++
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~---------~~~~h~~~~l~~~pd  145 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR---------PHGLHSGGRIAFGPD  145 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC---------TTCCCCCCCEEECTT
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC---------CCCCcCCceEEECCC
Confidence            46999999997    8899999864     79999997643211222332211100         113557899999999


Q ss_pred             CCEEEEeCC-------------CCEEEEEcCCC-ceEEcCCCCCCCCcCC--CC---ccccccCCCceeEEEcC-CCeEE
Q 011435          146 GNLYVADTL-------------NLAIRKIGDAG-VTTIAGGKSNVAGFRD--GP---SEDAKFSNDFDVVYVRP-TCSLL  205 (486)
Q Consensus       146 G~LYVAD~~-------------n~rIrkid~~G-v~tiaGg~~g~~G~~D--G~---~~~a~f~~P~gIa~vd~-~G~LY  205 (486)
                      |.|||++..             .++|.+|+++| +-  .++     -|.+  +.   .-..-+.+|++++ +++ +|+||
T Consensus       146 G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p--~~n-----pf~~~~~~~~~i~a~G~rnp~g~a-~d~~~g~l~  217 (352)
T 2ism_A          146 GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA--PGN-----PFLGRRGARPEVYSLGHRNPQGLA-WHPKTGELF  217 (352)
T ss_dssp             SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC--TTC-----TTTTCTTSCTTEEEECCSEECCCE-ECTTTCCEE
T ss_pred             CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC--CCC-----cccCCCCCCccEEEEcCCCcccEE-EECCCCCEE
Confidence            999999742             36899999988 21  110     0100  00   0011256799998 566 89999


Q ss_pred             EEeCCCCe
Q 011435          206 VIDRGNAA  213 (486)
Q Consensus       206 VaD~gn~r  213 (486)
                      |+|.+.++
T Consensus       218 v~d~g~~~  225 (352)
T 2ism_A          218 SSEHGPSG  225 (352)
T ss_dssp             EEEECC--
T ss_pred             EEEcCCCC
Confidence            99998887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.05  E-value=3.1e-09  Score=104.53  Aligned_cols=106  Identities=15%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             CccceeEEEccCC-eEEEEECCCCEEEEEcCCCC-cccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEE
Q 011435           74 GVVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLS-QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA  151 (486)
Q Consensus        74 ~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~-~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA  151 (486)
                      +..|+||  ++|| .|||+|..+++|++++.++. ..+...+++                 .+..|.||++|++|+||||
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-----------------~~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-----------------EQTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-----------------ESCCCSSEEEBTTCCEEEE
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-----------------ccCCCCCeEECCCCCEEEE
Confidence            3578998  5555 69999999999999998631 111111111                 2457999999999999999


Q ss_pred             eCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCCeEEEEeCCC
Q 011435          152 DTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLVIDRGN  211 (486)
Q Consensus       152 D~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G~LYVaD~gn  211 (486)
                      |..+++|++|+++| +..+....             ..+..|.++++.   +..+.|||++.++
T Consensus       229 ~~~~~~V~~~~~~G~~~~~~~~~-------------~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          229 THIYNSVVRIAPDRSTTIIAQAE-------------QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CBTTCCEEEECTTCCEEEEECGG-------------GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             eCCCCeEEEECCCCCEEEEeecc-------------cccCCceEEEEecccCCCCEEEEECCCC
Confidence            99999999999998 54443210             125679999854   2347999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.02  E-value=8.3e-09  Score=105.22  Aligned_cols=171  Identities=13%  Similarity=0.107  Sum_probs=108.7

Q ss_pred             cCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc
Q 011435           59 ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK  138 (486)
Q Consensus        59 ~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~  138 (486)
                      ..++.++.+.++   +..|.+|++++||+|||+|.. ++|++++.++    . ..+.+..  .        ....+..|.
T Consensus        16 ~~~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G----~-~~~~~~~--v--------~~~g~~g~~   76 (354)
T 3a9g_A           16 EWKFKISEVASD---LEVPWSIAPLGGGRYLVTERP-GRLVLISPSG----K-KLVASFD--V--------ANVGEAGLL   76 (354)
T ss_dssp             CCCEEEEEEECS---CSCEEEEEEEETTEEEEEETT-TEEEEECSSC----E-EEEEECC--C--------CCSTTCSEE
T ss_pred             CCCeEEEEEeCC---CCCCeEEEEcCCCeEEEEeCC-CEEEEEeCCC----c-eEeeccc--e--------eecCCCcee
Confidence            345677777765   457999999999999999987 8999998653    3 3444321  0        011245799


Q ss_pred             eEEEcCC----CCEEEEeCC---C----CEEEEEcCCC----c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcC
Q 011435          139 GVTMDDK----GNLYVADTL---N----LAIRKIGDAG----V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP  200 (486)
Q Consensus       139 GIavD~d----G~LYVAD~~---n----~rIrkid~~G----v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~  200 (486)
                      ||+++++    |.|||++..   +    ++|.+++.++    +   .++..+..           ......|.+|+ +++
T Consensus        77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~-----------~~~~h~~~~l~-~~p  144 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP-----------GAYIHNGGRIR-FGP  144 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE-----------CCSSCCCCCEE-ECT
T ss_pred             eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC-----------CCCCcCCceEE-ECC
Confidence            9999996    889999974   3    7899998654    1   12211100           11234578887 789


Q ss_pred             CCeEEEEeCC-------------CCeEEEEECCCCceeecccCCCCcceEEEEeee-eecceEeeeccCCcceEEeecCC
Q 011435          201 TCSLLVIDRG-------------NAALRQISLNQDDCEYQYNSISPTDILMVVGAV-LVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       201 ~G~LYVaD~g-------------n~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~-~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      +|.|||++..             +++|.+|+++|..-   ...-+..  ..+...+ -.++.+++.. ..|.+++++...
T Consensus       145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p---~~npf~~--~~i~a~G~rnp~Gla~d~-~~g~l~v~d~g~  218 (354)
T 3a9g_A          145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP---ADNPFPN--SPIWSYGHRNPQGIDWHR-ASGVMVATEHGP  218 (354)
T ss_dssp             TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC---TTSSSTT--CCEEEECCSCCCEEEECT-TTCCEEEEECCS
T ss_pred             CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC---CCCCCCC--CcEEEEccCCcceEEEeC-CCCCEEEEecCC
Confidence            9999999632             36899999987421   1111101  1122222 2456777743 157788887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.01  E-value=4.2e-09  Score=104.82  Aligned_cols=131  Identities=13%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCC----------CEEEEEcCCCCcccccEEEecccCCccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVN----------SNIVKITPPLSQYSRGRLVAGSFQGYTGHV  125 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n----------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~  125 (486)
                      ++...+..+.++..+    ..|.+++++++|++||++..+          +.|++||+.+..   +.......   .|  
T Consensus       157 iD~~t~~~~~~i~~g----~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---v~~~~~~~---~g--  224 (328)
T 3dsm_A          157 IDTETDKVVDELTIG----IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---VEKQFKFK---LG--  224 (328)
T ss_dssp             EETTTTEEEEEEECS----SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---EEEEEECC---TT--
T ss_pred             EECCCCeEEEEEEcC----CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---EEEEEecC---CC--
Confidence            555566666555443    359999999999999999875          899999987432   22111110   01  


Q ss_pred             CCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCe
Q 011435          126 DGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCS  203 (486)
Q Consensus       126 dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~  203 (486)
                               ..|.+|+++++|+ |||++.   .|.++|..+-+... .     .+..     .....|.+|+ +++ +++
T Consensus       225 ---------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~-----~~~~-----~~~~~p~gi~-vdp~~g~  280 (328)
T 3dsm_A          225 ---------DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-R-----PFLE-----FRDTKYYGLT-VNPNNGE  280 (328)
T ss_dssp             ---------CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-S-----CSBC-----CCSSCEEEEE-ECTTTCC
T ss_pred             ---------CCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-e-----eeec-----CCCCceEEEE-EcCCCCe
Confidence                     2699999999776 999986   89999976511110 0     0000     0135799998 564 899


Q ss_pred             EEEEe----CCCCeEEEEECCCC
Q 011435          204 LLVID----RGNAALRQISLNQD  222 (486)
Q Consensus       204 LYVaD----~gn~rIr~id~~G~  222 (486)
                      |||++    ..+++|.+|+++|.
T Consensus       281 lyva~~~~y~~~~~V~v~d~~g~  303 (328)
T 3dsm_A          281 VYVADAIDYQQQGIVYRYSPQGK  303 (328)
T ss_dssp             EEEEECTTSSSEEEEEEECTTCC
T ss_pred             EEEEcccccccCCEEEEECCCCC
Confidence            99999    88999999999975

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.99  E-value=2.4e-08  Score=99.32  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=96.6

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~  133 (486)
                      .+++...+..+.++..    +..|.+|+++++|.|||++..++.|.++|+.+.... ..+-.|.            ....
T Consensus        67 ~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~-~~i~~g~------------~~~~  129 (328)
T 3dsm_A           67 FAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT-GYIECPD------------MDME  129 (328)
T ss_dssp             EEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE-EEEECTT------------CCTT
T ss_pred             EEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE-EEEEcCC------------cccc
Confidence            3466777777777743    346999999989999999977889999998753210 0111121            0123


Q ss_pred             cCCcceEEEcCCCCEEEEeCC-CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          134 FNHPKGVTMDDKGNLYVADTL-NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~-n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      +..|.+|+++ ++.|||++.+ ++.|.+||...   +.++..+                 ..|.+++ ++++|+|||++.
T Consensus       130 ~~~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-----------------~~p~~i~-~~~dG~l~v~~~  190 (328)
T 3dsm_A          130 SGSTEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-----------------IQPTSLV-MDKYNKMWTITD  190 (328)
T ss_dssp             TCBCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------------SCBCCCE-ECTTSEEEEEBC
T ss_pred             CCCcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------------CCccceE-EcCCCCEEEEEC
Confidence            5579999994 7789999984 89999999765   3444321                 2478897 688999999999


Q ss_pred             CC----------CeEEEEECCC
Q 011435          210 GN----------AALRQISLNQ  221 (486)
Q Consensus       210 gn----------~rIr~id~~G  221 (486)
                      ++          ++|.+|+...
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTT
T ss_pred             CCccCCccccCCceEEEEECCC
Confidence            86          8999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.98  E-value=8.5e-09  Score=104.74  Aligned_cols=172  Identities=13%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             EEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE
Q 011435           63 LVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM  142 (486)
Q Consensus        63 ~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav  142 (486)
                      .++.++++   +..|.+|++++||+|||+|.. ++|++++ ++    ....+++..  .        ....+..|.||++
T Consensus        22 ~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g----~~~~~~~~~--v--------~~~g~~~p~gia~   82 (352)
T 2ism_A           22 RVEEVVGG---LEVPWALAFLPDGGMLIAERP-GRIRLFR-EG----RLSTYAELS--V--------YHRGESGLLGLAL   82 (352)
T ss_dssp             CEEEEECC---CSCEEEEEECTTSCEEEEETT-TEEEEEE-TT----EEEEEEECC--C--------CCSTTCSEEEEEE
T ss_pred             EEEEEECC---CCCceEEEEcCCCeEEEEeCC-CeEEEEE-CC----CccEeecce--E--------eecCCCCceeEEE
Confidence            34455554   446999999999999999986 8999998 53    234444321  0        0112567999999


Q ss_pred             cCC----CCEEEEeCCC-----CEEEEEcCCC--c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435          143 DDK----GNLYVADTLN-----LAIRKIGDAG--V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       143 D~d----G~LYVAD~~n-----~rIrkid~~G--v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD  208 (486)
                      +++    |.|||+++.+     ++|.+++.++  +   ..+..+..         ........|.+|+ ++++|.|||++
T Consensus        83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p---------~~~~~~h~~~~l~-~~pdG~Lyv~~  152 (352)
T 2ism_A           83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIP---------ARPHGLHSGGRIA-FGPDGMLYVTT  152 (352)
T ss_dssp             CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEEC---------CCTTCCCCCCCEE-ECTTSCEEEEC
T ss_pred             CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCC---------CCCCCCcCCceEE-ECCCCCEEEEE
Confidence            997    7899999865     7999998664  2   22221100         0011244678897 78999999997


Q ss_pred             CC-------------CCeEEEEECCCCcee---ecccCCCCcceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          209 RG-------------NAALRQISLNQDDCE---YQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       209 ~g-------------n~rIr~id~~G~~~~---~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      ..             .++|.+|+++|..-.   +.+..+....+ ...| +-.++.+|+..+ .|.+++++...
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G-~rnp~g~a~d~~-~g~l~v~d~g~  223 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLG-HRNPQGLAWHPK-TGELFSSEHGP  223 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEEC-CSEECCCEECTT-TCCEEEEEECC
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEc-CCCcccEEEECC-CCCEEEEEcCC
Confidence            32             368999999873110   00000011111 1111 224566776431 47788887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=1.3e-08  Score=101.69  Aligned_cols=169  Identities=12%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             ccceeEEEcc-CCeEEEEEC---CCCEEEEEcCCCCcccccEEEecccCCc-c--c--cCCCCcc-----cc----ccCC
Q 011435           75 VVPYKIRVSE-DGELFAVDE---VNSNIVKITPPLSQYSRGRLVAGSFQGY-T--G--HVDGKPN-----EA----RFNH  136 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~---~n~rI~kid~~g~~~~~~~~vaG~~~G~-~--G--~~dG~~~-----~a----~Ln~  136 (486)
                      ..|.+|++|+ +|.+||+|.   .++.|++++.++..   ...+....... .  +  ..+|...     ..    -...
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  196 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG  196 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCceeceecc
Confidence            4689999996 578999999   88999999986432   22222110000 0  0  0111100     00    1146


Q ss_pred             cceEEEcCCCC-EEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEE
Q 011435          137 PKGVTMDDKGN-LYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR  215 (486)
Q Consensus       137 P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr  215 (486)
                      |+||+++++|+ ||++|...++|++++.+.+..  +......-+. ..........|.+++ +|++|+|||++..+++|.
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~g~pdgia-~d~~G~l~va~~~~~~V~  272 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN--LQLTDAELGS-KIERYSEKPICDGIS-IDKDHNIYVGDLAHSAIG  272 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC--TTCCHHHHHT-TCEEEEECCSCSCEE-ECTTCCEEEEEGGGTEEE
T ss_pred             cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC--CCCChhhhhc-ceEecccCCCCceEE-ECCCCCEEEEccCCCeEE
Confidence            89999999997 999999999999997421000  0000000000 000000123588997 789999999999999999


Q ss_pred             EEEC-CCCceeecccCCCCcceEEEEee--eeecceEeeeccCCcceEEeecC
Q 011435          216 QISL-NQDDCEYQYNSISPTDILMVVGA--VLVGYVTCMLQQGFGPFFFSRTQ  265 (486)
Q Consensus       216 ~id~-~G~~~~~~~~~~~~~~i~t~~g~--~~~Gy~l~l~~~~~g~~~~a~~~  265 (486)
                      +++. +|.             +.+++..  +..+.++|+..  .|.++++...
T Consensus       273 ~~d~~~G~-------------~~~~~~~~~~~~p~~va~~~--~g~l~v~~~~  310 (343)
T 2qe8_A          273 VITSADRA-------------YKLLVTDEKLSWTDSFNFGS--DGYLYFDCNQ  310 (343)
T ss_dssp             EEETTTTE-------------EEEEEECGGGSCEEEEEECT--TSCEEEEECC
T ss_pred             EEECCCCC-------------EEEEEECCceecCCeeEECC--CCcEEEEeCc
Confidence            9999 663             2223222  23456666654  3566665543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.93  E-value=1.5e-08  Score=97.43  Aligned_cols=121  Identities=13%  Similarity=0.193  Sum_probs=87.7

Q ss_pred             ccceeEEEccCCeEEEE-------ECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC-C
Q 011435           75 VVPYKIRVSEDGELFAV-------DEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-G  146 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVa-------D~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G  146 (486)
                      ..|.++++|++|+||++       |..+++|.++++.+.   ....+...  ...         .....|.+|++|++ |
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~--~~~---------~~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKP--EVN---------GYGGIPAGCQCDRDAN   83 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECC--EET---------TEECCEEEEEECSSSS
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC---cEEEEEec--ccC---------CCCCCCceEEEecCCC
Confidence            46999999999999999       888889999997543   23333210  000         01246999999999 9


Q ss_pred             CEEEEeCCCCEEEEEcCCC-ceEE-cCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-------------
Q 011435          147 NLYVADTLNLAIRKIGDAG-VTTI-AGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-------------  211 (486)
Q Consensus       147 ~LYVAD~~n~rIrkid~~G-v~ti-aGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-------------  211 (486)
                      +|||++..+ .|.++|.+| +..+ ....           ....+..|++++ ++++|+|||++..+             
T Consensus        84 ~l~v~~~~~-~l~~~d~~g~~~~~~~~~~-----------~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~~  150 (314)
T 1pjx_A           84 QLFVADMRL-GLLVVQTDGTFEEIAKKDS-----------EGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEETTT-EEEEEETTSCEEECCSBCT-----------TSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cEEEEECCC-CEEEEeCCCCEEEEEeccC-----------CCccccCCcCEE-ECCCCCEEEEecCcccccccccccccC
Confidence            999999754 899999887 4444 3210           012345789997 78999999999876             


Q ss_pred             --CeEEEEECCCC
Q 011435          212 --AALRQISLNQD  222 (486)
Q Consensus       212 --~rIr~id~~G~  222 (486)
                        ++|.+++.++.
T Consensus       151 ~~~~l~~~~~~g~  163 (314)
T 1pjx_A          151 KFGSIYCFTTDGQ  163 (314)
T ss_dssp             SCEEEEEECTTSC
T ss_pred             CCCeEEEECCCCC
Confidence              68999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.91  E-value=7.2e-08  Score=94.02  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcce
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKG  139 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~G  139 (486)
                      .+..+..+..+.   ..|.+++++++|+||+++..++.|+++++++..   ...+...               .-..|.+
T Consensus        33 ~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---~~~~~~~---------------~~~~~~~   91 (333)
T 2dg1_A           33 TAEPWLEISKKG---LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---IKRPFVS---------------HKANPAA   91 (333)
T ss_dssp             ECEEEEEEESSC---CCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---EEEEEEC---------------SSSSEEE
T ss_pred             ccceeEEEeccC---ccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---EEEEeeC---------------CCCCcce
Confidence            344455554432   358999999999999999999999999987532   2322210               0136899


Q ss_pred             EEEcCCCCEEEEeCCC----CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC---
Q 011435          140 VTMDDKGNLYVADTLN----LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG---  210 (486)
Q Consensus       140 IavD~dG~LYVAD~~n----~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g---  210 (486)
                      |++|++|+|||++..+    +.|+++|.++  +..+....             .....|++++ ++++|+|||++..   
T Consensus        92 i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~i~-~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           92 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------STAYCIDDMV-FDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-------------SSCCCEEEEE-ECTTSCEEEEECCCBT
T ss_pred             EEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-------------ccCCcccceE-ECCCCCEEEEeccccc
Confidence            9999999999999876    7999999877  44332210             0124578887 7889999999975   


Q ss_pred             ---CCeEEEEECCC
Q 011435          211 ---NAALRQISLNQ  221 (486)
Q Consensus       211 ---n~rIr~id~~G  221 (486)
                         +++|.+++.++
T Consensus       158 ~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          158 TNPLGGVYYVSPDF  171 (333)
T ss_dssp             TBCCEEEEEECTTS
T ss_pred             cCCCceEEEEeCCC
Confidence               57899998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.90  E-value=7.8e-08  Score=93.80  Aligned_cols=113  Identities=13%  Similarity=0.018  Sum_probs=84.3

Q ss_pred             cceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .++|+++++ +|.||++|..+++|+++++++..   ... ...                -..|.+|+++++|+|||+.  
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~-~~~----------------~~~~~~i~~~~dG~l~v~~--   71 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQR-VTM----------------DAPVSSVALRQSGGYVATI--   71 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEE-EEC----------------SSCEEEEEEBTTSSEEEEE--
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEE-EeC----------------CCceEEEEECCCCCEEEEE--
Confidence            489999998 57899999999999999987542   222 211                1258899999999999998  


Q ss_pred             CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-----------CCCeEEEEECCC
Q 011435          155 NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-----------GNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~-----------gn~rIr~id~~G  221 (486)
                      ++.|.++|.++  ++.++...           ....++.|++++ ++++|+|||++.           ..++|.+++.++
T Consensus        72 ~~~l~~~d~~~g~~~~~~~~~-----------~~~~~~~~~di~-~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           72 GTKFCALNWKEQSAVVLATVD-----------NDKKNNRFNDGK-VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             TTEEEEEETTTTEEEEEEECC-----------TTCSSEEEEEEE-ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             CCeEEEEECCCCcEEEEEecC-----------CCCCCCCCCCEE-ECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            57999999764  55554321           012356789997 799999999984           345788888876


Q ss_pred             C
Q 011435          222 D  222 (486)
Q Consensus       222 ~  222 (486)
                      .
T Consensus       140 ~  140 (297)
T 3g4e_A          140 H  140 (297)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.90  E-value=1.1e-08  Score=104.20  Aligned_cols=126  Identities=10%  Similarity=0.127  Sum_probs=81.1

Q ss_pred             ccceeEEEccC----CeEEEEECC---C----CEEEEEcCCCC--cccccEEEecccCCccccCCCCccccccCCcceEE
Q 011435           75 VVPYKIRVSED----GELFAVDEV---N----SNIVKITPPLS--QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT  141 (486)
Q Consensus        75 ~~P~GlAVd~d----G~LYVaD~~---n----~rI~kid~~g~--~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa  141 (486)
                      ..|.||+++++    |.|||++..   +    ++|.+++.++.  .....+++.....           ....+.|.+|+
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~-----------~~~~h~~~~l~  141 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP-----------GAYIHNGGRIR  141 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE-----------CCSSCCCCCEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC-----------CCCCcCCceEE
Confidence            45999999986    899999974   3    68999987653  1111222222111           11245789999


Q ss_pred             EcCCCCEEEEeCC-------------CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCeEEEE
Q 011435          142 MDDKGNLYVADTL-------------NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCSLLVI  207 (486)
Q Consensus       142 vD~dG~LYVAD~~-------------n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~LYVa  207 (486)
                      ++++|.|||++..             +++|++|+++|-  +....    -|.....-..-+.+|++++ +++ +|+|||+
T Consensus       142 ~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~--~p~~n----pf~~~~i~a~G~rnp~Gla-~d~~~g~l~v~  214 (354)
T 3a9g_A          142 FGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR--PPADN----PFPNSPIWSYGHRNPQGID-WHRASGVMVAT  214 (354)
T ss_dssp             ECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--CCTTS----SSTTCCEEEECCSCCCEEE-ECTTTCCEEEE
T ss_pred             ECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--CCCCC----CCCCCcEEEEccCCcceEE-EeCCCCCEEEE
Confidence            9999999999642             368999999882  00000    0000000011267899998 566 8999999


Q ss_pred             eCCCCe---EEEEE
Q 011435          208 DRGNAA---LRQIS  218 (486)
Q Consensus       208 D~gn~r---Ir~id  218 (486)
                      |.+.++   |.++.
T Consensus       215 d~g~~~~dei~~i~  228 (354)
T 3a9g_A          215 EHGPVGHDEVNIIL  228 (354)
T ss_dssp             ECCSSSCCEEEEEC
T ss_pred             ecCCCCCcEEEEec
Confidence            998865   55554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.89  E-value=2.8e-08  Score=95.54  Aligned_cols=118  Identities=17%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             ccceeEEEc----cCC-eEEEEECCCCEEEEEcCCC-CcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCE
Q 011435           75 VVPYKIRVS----EDG-ELFAVDEVNSNIVKITPPL-SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNL  148 (486)
Q Consensus        75 ~~P~GlAVd----~dG-~LYVaD~~n~rI~kid~~g-~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~L  148 (486)
                      ..|.+++++    ++| .|||+|..+++|++++.+. ........+... .   +        ..+..|.+|++|++|+|
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~---~--------~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-P---G--------THEGGADGMDFDEDNNL  239 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-C---C--------CSSCEEEEEEEBTTCCE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-C---C--------CCCCCCCceEECCCCCE
Confidence            358999999    999 4999999999999998641 110111122211 0   0        01146999999999999


Q ss_pred             EEEeCCCCEEEEEcCC-C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCC
Q 011435          149 YVADTLNLAIRKIGDA-G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       149 YVAD~~n~rIrkid~~-G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G  221 (486)
                      ||++..+++|.++|++ |  +..+...                ...|.+++ .+++|+ |||++..++.|.+++++.
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~----------------~~~~~~i~-~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRIRCP----------------FEKPSNLH-FKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECS----------------SSCEEEEE-ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEEeCC----------------CCCceeEE-ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999888999999988 6  3444221                14578888 478887 999999999999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.88  E-value=3.2e-08  Score=96.48  Aligned_cols=119  Identities=10%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             ccceeEEEccCCeEEEEECC------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-
Q 011435           75 VVPYKIRVSEDGELFAVDEV------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-  147 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-  147 (486)
                      ..|.++++|++|+|||++..      .+.|++++.++..   ...+..                .+..|++|+++++|+ 
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~----------------~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQ----------------NISVANGIALSTDEKV  195 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEE----------------EESSEEEEEECTTSSE
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE---EEEeec----------------CCCcccceEECCCCCE
Confidence            46899999999999999975      4689999987432   222222                134689999999997 


Q ss_pred             EEEEeCCCCEEEEEcC--CC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          148 LYVADTLNLAIRKIGD--AG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       148 LYVAD~~n~rIrkid~--~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |||++..+++|++++.  +|  +..+....     ....    .....|.+++ ++++|+|||++..+++|.++++++.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~-----~~~~----~~~~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATI-----PYYF----TGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEE-----EEEC----CSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceE-----EEec----CCCCCCCceE-ECCCCCEEEEEcCCCEEEEECCCCC
Confidence            9999998899999987  44  22221000     0000    0013578887 7899999999999999999999765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.88  E-value=1.5e-08  Score=103.37  Aligned_cols=132  Identities=20%  Similarity=0.191  Sum_probs=86.4

Q ss_pred             ccceeEEE---ccCCeEEE-EEC------------CCCEEEEEcCCCCcccccEEEecccCCccccCCC--CccccccCC
Q 011435           75 VVPYKIRV---SEDGELFA-VDE------------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDG--KPNEARFNH  136 (486)
Q Consensus        75 ~~P~GlAV---d~dG~LYV-aD~------------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG--~~~~a~Ln~  136 (486)
                      ..|.||.+   |++|.||| +|.            +.+.|+++|++++..++....+.-.    +..++  ......+..
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~----~~~~~~~~~~g~~~~~  138 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE----KVQDEFEKKAGKRPFG  138 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH----HHHHHHHHHHSSCCEE
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc----cccccccccccccccC
Confidence            35799999   79999998 562            3578999998732212233333210    00000  000002345


Q ss_pred             cceEEEcCCCCEEEEeCCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          137 PKGVTMDDKGNLYVADTLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       137 P~GIavD~dG~LYVAD~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      |++|++|++||+||+|+.. +.|+|++++|  +..+.-..          ........++||++.+....|+|++. .++
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~----------~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~  207 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES----------GNGGQRPGYSGITFDPHSNKLIAFGG-PRA  207 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC----------CCSSSCCSCSEEEEETTTTEEEEESS-SSS
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC----------CCcccccCcceEEEeCCCCEEEEEcC-CCe
Confidence            8999999999999999999 9999999999  33332110          01122456899996555557888887 999


Q ss_pred             EEEEECCC
Q 011435          214 LRQISLNQ  221 (486)
Q Consensus       214 Ir~id~~G  221 (486)
                      |.+|++..
T Consensus       208 L~~fD~~~  215 (334)
T 2p9w_A          208 LTAFDVSK  215 (334)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99999873

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=4.3e-09  Score=105.23  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=83.3

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .|.||++++||+ ||+++...++|++++.+....+...  .+.......      .......|.||++|++|+|||||..
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~------~~g~~g~pdgia~d~~G~l~va~~~  267 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT--DAELGSKIE------RYSEKPICDGISIDKDHNIYVGDLA  267 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC--HHHHHTTCE------EEEECCSCSCEEECTTCCEEEEEGG
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC--hhhhhcceE------ecccCCCCceEEECCCCCEEEEccC
Confidence            489999999995 9999999999999974210000000  000000000      0001226999999999999999999


Q ss_pred             CCEEEEEcC-CC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435          155 NLAIRKIGD-AG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       155 n~rIrkid~-~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id  218 (486)
                      +++|.++|+ +| +.+++..              ..+..|.+++ ++++|.|||++...+++..|.
T Consensus       268 ~~~V~~~d~~~G~~~~~~~~--------------~~~~~p~~va-~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          268 HSAIGVITSADRAYKLLVTD--------------EKLSWTDSFN-FGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             GTEEEEEETTTTEEEEEEEC--------------GGGSCEEEEE-ECTTSCEEEEECCGGGSGGGB
T ss_pred             CCeEEEEECCCCCEEEEEEC--------------CceecCCeeE-ECCCCcEEEEeCccccccccc
Confidence            999999999 78 6665532              1367899998 678899999998777665444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.83  E-value=9.1e-08  Score=98.41  Aligned_cols=146  Identities=13%  Similarity=0.129  Sum_probs=99.0

Q ss_pred             ccceeEEEcc--CC--eEEEEECC--CCE--EEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC
Q 011435           75 VVPYKIRVSE--DG--ELFAVDEV--NSN--IVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        75 ~~P~GlAVd~--dG--~LYVaD~~--n~r--I~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      ..|.||.+..  +|  .|||+|..  +++  |++++.++.    ..+.+.+..           ...|+.|+++++|++|
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----~~~~~~~~~-----------g~~~~~pND~~v~~~G  176 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLHLKTIR-----------HKLLPSVNDIVAVGPE  176 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEEEEEEC-----------CTTCSSEEEEEEEETT
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC----EEEEEeccc-----------cCCCCCCceEEEeCCC
Confidence            4899999965  46  49999987  344  666776643    334443321           1358899999999999


Q ss_pred             CEEEEeC-----------------CCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEe
Q 011435          147 NLYVADT-----------------LNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVID  208 (486)
Q Consensus       147 ~LYVAD~-----------------~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD  208 (486)
                      .+||++.                 ..++|++++++.++.++.+                +..|+||++ ++++ .|||+|
T Consensus       177 ~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~----------------l~~pNGia~-spDg~~lYvad  239 (355)
T 3sre_A          177 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG----------------FDFANGINI-SPDGKYVYIAE  239 (355)
T ss_dssp             EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE----------------ESSEEEEEE-CTTSSEEEEEE
T ss_pred             CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC----------------CcccCcceE-CCCCCEEEEEe
Confidence            9999875                 2468999988656655543                678999985 5555 899999


Q ss_pred             CCCCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccC-CcceEEee
Q 011435          209 RGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQG-FGPFFFSR  263 (486)
Q Consensus       209 ~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~-~g~~~~a~  263 (486)
                      +..++|++++.++.        +.... ..+..  +.|+...+..+. .|.++++-
T Consensus       240 t~~~~I~~~~~~~~--------g~l~~-~~~~~--~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          240 LLAHKIHVYEKHAN--------WTLTP-LRVLS--FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             GGGTEEEEEEECTT--------SCEEE-EEEEE--CSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEEECCC--------CcEec-CEEEe--CCCCCceEEEeCCCCcEEEEe
Confidence            99999999998742        00001 11111  135555555576 48888854

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.79  E-value=2e-07  Score=92.50  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=82.7

Q ss_pred             ccceeEEEccCCeEEEEECC------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-
Q 011435           75 VVPYKIRVSEDGELFAVDEV------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-  147 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-  147 (486)
                      ..+.++++|++|+|||++..      .+.|++++ ++    ....+..                .+..|++|+++++|+ 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g----~~~~~~~----------------~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG----KVTKLFA----------------DISIPNSICFSPDGTT  192 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT----EEEEEEE----------------EESSEEEEEECTTSCE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC----cEEEeeC----------------CCcccCCeEEcCCCCE
Confidence            45889999999999999863      46899998 53    2333322                133689999999997 


Q ss_pred             EEEEeCCCCEEEEEcCC---C-c----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435          148 LYVADTLNLAIRKIGDA---G-V----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       148 LYVAD~~n~rIrkid~~---G-v----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~  219 (486)
                      |||+|..+++|++++.+   | .    ..+...        +     .....|.+++ +|++|+|||++.++++|.++++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--------~-----~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS--------T-----GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC--------T-----TSSSEEEEEE-ECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEEC--------C-----CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEECC
Confidence            99999999999999854   3 1    111110        0     0113477886 7999999999998899999999


Q ss_pred             CCC
Q 011435          220 NQD  222 (486)
Q Consensus       220 ~G~  222 (486)
                      +|.
T Consensus       259 ~g~  261 (326)
T 2ghs_A          259 DGN  261 (326)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            775

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.76  E-value=9.4e-08  Score=98.29  Aligned_cols=110  Identities=18%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             ccCccceeEEEccCCeEEEEEC-----------------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           72 EIGVVPYKIRVSEDGELFAVDE-----------------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        72 ~~~~~P~GlAVd~dG~LYVaD~-----------------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ..++.|++++++++|.+||++.                 ..++|+++++.     ..++++..                |
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~~----------------l  220 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAEG----------------F  220 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-----CCEEEEEE----------------E
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-----eEEEeecC----------------C
Confidence            3467999999999999999874                 34689999873     34555432                6


Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCC--C-ce---EEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCeEEE
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDA--G-VT---TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCSLLV  206 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~--G-v~---tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~LYV  206 (486)
                      ..||||++++||+ |||||+..++|++++.+  | +.   .+ ..                -..|.+++ +|. +|+|||
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~----------------~g~PDGi~-vD~e~G~lwv  282 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF----------------DTLVDNIS-VDPVTGDLWV  282 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC----------------SSEEEEEE-ECTTTCCEEE
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC----------------CCCCceEE-EeCCCCcEEE
Confidence            6899999999996 99999999999999753  4 21   22 10                12488887 788 599999


Q ss_pred             Ee-CCCCeEEEEECC
Q 011435          207 ID-RGNAALRQISLN  220 (486)
Q Consensus       207 aD-~gn~rIr~id~~  220 (486)
                      +. .+..+|.+++++
T Consensus       283 a~~~~g~~v~~~~P~  297 (355)
T 3sre_A          283 GCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEESCHHHHHSCCTT
T ss_pred             EecCCceEEEEECCC
Confidence            76 454555555554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.71  E-value=9.5e-08  Score=97.12  Aligned_cols=139  Identities=9%  Similarity=-0.012  Sum_probs=90.6

Q ss_pred             ccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435           58 FENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH  136 (486)
Q Consensus        58 ~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~  136 (486)
                      .+.|+.+++++++   +..|.+|++++||+ |||++. .++|++++.++..   ...+++...         ........
T Consensus         4 ~p~g~~~~~va~~---l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~---~~~~~~~~~---------v~~~g~~g   67 (353)
T 2g8s_A            4 APATVNVEVLQDK---LDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGL---SAPLSGVPD---------VWAHGQGG   67 (353)
T ss_dssp             --CCSEEEEEEEE---ESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEE---CCCCBSCCC---------CCCSTTCS
T ss_pred             CCCCcEEEEEECC---CCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCce---eeEecCCcc---------cccCCCCC
Confidence            4567888888874   45799999999999 999997 4799999876431   111222100         00111336


Q ss_pred             cceEEEcC----CCCEEEEeCC-------CCEEEEEcCCC----c---eEEcCCCCCCCCcCCCCccccccCCCceeEEE
Q 011435          137 PKGVTMDD----KGNLYVADTL-------NLAIRKIGDAG----V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV  198 (486)
Q Consensus       137 P~GIavD~----dG~LYVAD~~-------n~rIrkid~~G----v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v  198 (486)
                      |.||++++    +|.|||+++.       .++|.+++.++    +   .++.....         ........+.+|+ +
T Consensus        68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---------~~~~~~h~~~~l~-~  137 (353)
T 2g8s_A           68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMP---------KLSTGNHFGGRLV-F  137 (353)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSS---------CCBSSSCCCCCEE-E
T ss_pred             ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECC---------CCCCCcccCccEE-E
Confidence            89999998    5889999875       46888886432    1   22221100         0011233577887 7


Q ss_pred             cCCCeEEEEeCC-------------CCeEEEEECCCC
Q 011435          199 RPTCSLLVIDRG-------------NAALRQISLNQD  222 (486)
Q Consensus       199 d~~G~LYVaD~g-------------n~rIr~id~~G~  222 (486)
                      +++|.|||+...             .++|.+|+++|.
T Consensus       138 ~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A          138 DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            899999999633             368999999874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.70  E-value=5e-07  Score=92.63  Aligned_cols=171  Identities=13%  Similarity=0.067  Sum_probs=105.8

Q ss_pred             cEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEE
Q 011435           62 YLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT  141 (486)
Q Consensus        62 ~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa  141 (486)
                      ..++++.+|   +..|.+|++++||.|||++...++|++++.++.   ....+.+.. ..        .......|.|||
T Consensus        22 ~~~~~va~g---L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g---~~~~v~~~~-~v--------~~~g~~GllGia   86 (347)
T 3das_A           22 KVLRTVATG---LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG---RKTELGEVP-GV--------SPSGEGGLLGIA   86 (347)
T ss_dssp             EEEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECT-TC--------CCBTTBSEEEEE
T ss_pred             ceeEEeecC---CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC---cEeeecccC-ce--------eecCCCCceeeE
Confidence            456677766   447999999999999999987899999987532   233333211 00        011245789999


Q ss_pred             EcC----CCCEEEEeC--CCCEEEEEcCCC----------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEE
Q 011435          142 MDD----KGNLYVADT--LNLAIRKIGDAG----------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLL  205 (486)
Q Consensus       142 vD~----dG~LYVAD~--~n~rIrkid~~G----------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LY  205 (486)
                      +++    +|.|||+.+  ..++|.++..++          ..+|.....         .  ...-....|+ .+++|.||
T Consensus        87 ~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p---------~--~~~H~g~~l~-fgpDG~Ly  154 (347)
T 3das_A           87 LSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP---------K--GVIHNGGRIA-FGPDKMLY  154 (347)
T ss_dssp             ECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC---------C--CSSCCCCCEE-ECTTSCEE
T ss_pred             eccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC---------C--CCCccCcccc-CCCCCCEE
Confidence            998    488999864  457899886433          122221100         0  1112345687 78999999


Q ss_pred             EEe-------------CCCCeEEEEECCCCceeecccCCCCcceEEEEeeee-ecceEeeeccCCcceEEeecCC
Q 011435          206 VID-------------RGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVL-VGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       206 VaD-------------~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~-~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      |+-             ...++|.||+++|..-   ...-+..  ..+.+.++ ..+.+++..  .|.+++++...
T Consensus       155 vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip---~~nPf~~--~~i~a~G~RNp~Gla~dp--~G~L~~~d~g~  222 (347)
T 3das_A          155 AGTGESGDTGLSQDRKSLGGKILRMTPDGEPA---PGNPFPG--SPVYSYGHRNVQGLAWDD--KQRLFASEFGQ  222 (347)
T ss_dssp             EECBCTTCGGGTTCTTCSTTCEEEECTTSSBC---TTCSSTT--CCEEEBCCSBCCEEEECT--TCCEEEEECCS
T ss_pred             EEECCCCCCccccCCCCCCCEEEEEeCCCCcc---CCCCCCC--CeEEeeCCCCcceEEECC--CCCEEEEecCC
Confidence            994             2358999999998521   1111111  12333333 356777754  58888888643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.69  E-value=9.5e-07  Score=86.40  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=87.5

Q ss_pred             ceeEEEccCCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ..++.+.+||+++|++.. +++|+.++++|......  -.+.  +         ....+..|.+++++++|+++|++..+
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~--~~~~--~---------~~~~~~~~~~v~~~~~G~~lv~~~~~  145 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT--EFET--G---------IERPHAQFRQINKNKKGNYLVPLFAT  145 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE--EECC--S---------CSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE--eccC--C---------CCcccccccCceECCCCCEEEEecCC
Confidence            467788899999999998 88999999986532111  1110  0         01234568899999999999999999


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC-CC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN-QD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~-G~  222 (486)
                      ++|..+|++|  +-++...                 ..|.+++ ...+|+++|++..+++|..++++ |+
T Consensus       146 ~~v~~~d~~G~~~w~~~~~-----------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          146 SEVREIAPNGQLLNSVKLS-----------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             TEEEEECTTSCEEEEEECS-----------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CEEEEECCCCCEEEEEECC-----------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            9999999999  4444321                 2466776 67889999999999999999999 65

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.68  E-value=2.5e-07  Score=97.76  Aligned_cols=179  Identities=12%  Similarity=0.112  Sum_probs=107.5

Q ss_pred             ccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc
Q 011435           58 FENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP  137 (486)
Q Consensus        58 ~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P  137 (486)
                      ...++.+++++++   +..|.+|++++||+|||++...++|++++.+.   +....++........       ......+
T Consensus        13 ~~~gf~~~~~a~~---l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~-------~~g~~Gl   79 (454)
T 1cru_A           13 KSENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVND-------ADGQNGL   79 (454)
T ss_dssp             CCTTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCC-------TTSSCSE
T ss_pred             CCCCeEEEEEECC---CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccc-------cCCCCce
Confidence            3457778888865   45799999999999999999878999998642   223444432110000       0012357


Q ss_pred             ceEEEcC----CCCEEEEeCC------------CCEEEEEcCCC----c---eEEcCCCCCCCCcCCCCccccccCCCce
Q 011435          138 KGVTMDD----KGNLYVADTL------------NLAIRKIGDAG----V---TTIAGGKSNVAGFRDGPSEDAKFSNDFD  194 (486)
Q Consensus       138 ~GIavD~----dG~LYVAD~~------------n~rIrkid~~G----v---~tiaGg~~g~~G~~DG~~~~a~f~~P~g  194 (486)
                      .|||+++    +|.|||+++.            .++|.+++.++    +   .++.....         .  ...-.+.+
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---------~--~~~H~~~~  148 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---------S--SKDHQSGR  148 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---------C--CSSCCEEE
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---------C--CCCCCCCe
Confidence            7999999    6789999964            46898886432    1   22221100         0  11234678


Q ss_pred             eEEEcCCCeEEEEeC--C------------------------------CCeEEEEECCCCceeecccCCCCcc-eEEEEe
Q 011435          195 VVYVRPTCSLLVIDR--G------------------------------NAALRQISLNQDDCEYQYNSISPTD-ILMVVG  241 (486)
Q Consensus       195 Ia~vd~~G~LYVaD~--g------------------------------n~rIr~id~~G~~~~~~~~~~~~~~-i~t~~g  241 (486)
                      |+ ++++|.|||+--  +                              .++|.||+++|..-   ...-+..+ ...+.+
T Consensus       149 l~-f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip---~~Npf~~~~~~ei~a  224 (454)
T 1cru_A          149 LV-IGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP---KDNPSFNGVVSHIYT  224 (454)
T ss_dssp             EE-ECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC---TTCCEETTEECSEEE
T ss_pred             Ee-ECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC---CCCCCCCCCcceEEE
Confidence            87 789999999842  1                              36899999987411   00000000 011222


Q ss_pred             eee-ecceEeeeccCCcceEEeecCC
Q 011435          242 AVL-VGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       242 ~~~-~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      .++ ..+.+|+..  .|.+++++...
T Consensus       225 ~G~RNp~gla~dp--~G~L~~~d~g~  248 (454)
T 1cru_A          225 LGHRNPQGLAFTP--NGKLLQSEQGP  248 (454)
T ss_dssp             BCCSEEEEEEECT--TSCEEEEEECS
T ss_pred             ECCCCcceEEECC--CCCEEEEecCC
Confidence            222 346666654  58888887643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.65  E-value=4.1e-07  Score=89.03  Aligned_cols=117  Identities=13%  Similarity=0.080  Sum_probs=89.5

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.+++++++|+++|++..+++|+.++++|..   ... .+.                -..|.+++++++|+++|++..
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~---~w~-~~~----------------~~~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFATSEVREIAPNGQL---LNS-VKL----------------SGTPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETTTTEEEEECTTSCE---EEE-EEC----------------SSCCCEEEECTTSCEEEECBT
T ss_pred             ccccCceECCCCCEEEEecCCCEEEEECCCCCE---EEE-EEC----------------CCCccceeEcCCCCEEEEeCC
Confidence            357889999999999999999999999998542   111 121                025889999999999999999


Q ss_pred             CCEEEEEcCC-C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC----------CCeEEEEECCC
Q 011435          155 NLAIRKIGDA-G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG----------NAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~-G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g----------n~rIr~id~~G  221 (486)
                      +++|..+|++ |  +-.+....  .        ...+|..|.+++ +.++|+|||++..          +.++..|+.+|
T Consensus       185 ~~~v~~~d~~tG~~~w~~~~~~--~--------~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          185 AHCFVQLNLESNRIVRRVNAND--I--------EGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             TSEEEEECTTTCCEEEEEEGGG--S--------BSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             CCeEEEEeCcCCcEEEEecCCC--C--------CCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            9999999998 7  45554210  0        112477788887 7889999999962          45799999988


Q ss_pred             C
Q 011435          222 D  222 (486)
Q Consensus       222 ~  222 (486)
                      +
T Consensus       254 ~  254 (276)
T 3no2_A          254 K  254 (276)
T ss_dssp             B
T ss_pred             C
Confidence            6

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.64  E-value=2.8e-07  Score=94.00  Aligned_cols=134  Identities=10%  Similarity=0.068  Sum_probs=88.5

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE---cCCCCEEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM---DDKGNLYV  150 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav---D~dG~LYV  150 (486)
                      .+|+++++|. +|.+||+|..+++|.++++++..   ...+  ...+...  +|    ....+|.||.+   |++|.|||
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~---~~~~--~~~~~s~--~g----~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS---HFNV--VIDGASS--NG----DGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC---EEEE--CCTTTCC--SS----CCSEEEEEEEESSSSSCCEEEE
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe---EEEE--ecCCccc--cC----CCcceeeEEEEeccCCCCcEEE
Confidence            3699999986 78899999999999999997432   1222  2222110  01    12336789999   78988888


Q ss_pred             -EeC------------CCCEEEEEcCC----C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-
Q 011435          151 -ADT------------LNLAIRKIGDA----G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-  211 (486)
Q Consensus       151 -AD~------------~n~rIrkid~~----G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-  211 (486)
                       +|.            +.+.|.++|.+    + ....+.-.....++.  ......+..+++++ +|.+|++||+|+.. 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~g~~~~~~nDva-vD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKAGKRPFGVVQSA-QDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHHSSCCEEEEEEE-ECTTSCEEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccccccccCCceeE-ECCCCCEEEeCCCCC
Confidence             663            35789999977    5 332222100000000  00001234588998 89999999999999 


Q ss_pred             CeEEEEECCCC
Q 011435          212 AALRQISLNQD  222 (486)
Q Consensus       212 ~rIr~id~~G~  222 (486)
                      +.|.+|+++|.
T Consensus       159 ~~I~rV~pdG~  169 (334)
T 2p9w_A          159 PAIARVSADGK  169 (334)
T ss_dssp             CEEEEECTTSC
T ss_pred             CeEEEEeCCCC
Confidence            99999999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.59  E-value=5.9e-06  Score=79.94  Aligned_cols=137  Identities=15%  Similarity=0.170  Sum_probs=88.7

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ++...+..+.++..+.    .|.+++++++|+ ||+++..++.|.+++..+..  ....+...    .+   ........
T Consensus        74 ~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~----~~---~~~~~~~~  140 (353)
T 3vgz_A           74 LDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE--VKGRLVLD----DR---KRTEEVRP  140 (353)
T ss_dssp             ECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEEESC----CC---CCCSSCCC
T ss_pred             EcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEEEEeCCCCe--eEEEEecC----CC---ccccccCC
Confidence            3444555555554433    489999999998 99999998999999987532  11122110    00   00001122


Q ss_pred             CCcceEEEcCCCC-EEEEeC-CCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          135 NHPKGVTMDDKGN-LYVADT-LNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~-~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      .+|.+++++++|+ |||++. .+++|+++|...   +..+...                -..|.++++......||+++.
T Consensus       141 ~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          141 LQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----------------GKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             CEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----------------CTTCCCCEEETTTTEEEEECT
T ss_pred             CCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC----------------CCccceEEECCCCCEEEEEcC
Confidence            3588999999988 999994 478899999865   3333211                123678875444456888876


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                       ++.|..++....
T Consensus       205 -~~~i~~~d~~~~  216 (353)
T 3vgz_A          205 -DGELITIDTADN  216 (353)
T ss_dssp             -TSEEEEEETTTT
T ss_pred             -CCeEEEEECCCC
Confidence             678999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.56  E-value=1.3e-06  Score=86.73  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCC--CC-cccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEE
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPP--LS-QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA  151 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~--g~-~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA  151 (486)
                      .|.++++++||+ ||++|..+++|++++.+  +. ......++... ..            ....|.||++|++|+|||+
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~------------~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-TG------------IKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TT------------SSSEEEEEEECTTSCEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC-CC------------CCCCCCeeEECCCCCEEEE
Confidence            589999999996 99999999999999864  22 11111222211 00            1125899999999999999


Q ss_pred             eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEE-cCCCeEEEEeCCC
Q 011435          152 DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV-RPTCSLLVIDRGN  211 (486)
Q Consensus       152 D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v-d~~G~LYVaD~gn  211 (486)
                      +..+++|.+++++|  +..+...                ...|.++++. +..+.|||+....
T Consensus       247 ~~~~~~v~~~d~~g~~~~~i~~~----------------~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          247 RWGEGAVDRYDTDGNHIARYEVP----------------GKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EETTTEEEEECTTCCEEEEEECS----------------CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EeCCCEEEEECCCCCEEEEEECC----------------CCCcEEEEEecCCCCEEEEEecCC
Confidence            98889999999988  3444321                1246788765 3446899998665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.49  E-value=1.5e-05  Score=77.00  Aligned_cols=113  Identities=11%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..|.++++++||+ ||+++. ++.|.++|.....   .......  +..+         .-..|.+|+++++|+ ||+++
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~---~~~~~~~--~~~~---------~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNA-DGELITIDTADNK---ILSRKKL--LDDG---------KEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECT-TSEEEEEETTTTE---EEEEEEC--CCSS---------SCCCEEEEEEETTTTEEEEEE
T ss_pred             CccceEEECCCCCEEEEEcC-CCeEEEEECCCCe---EEEEEEc--CCCC---------CCcccceEEECCCCCEEEEEe
Confidence            4589999999987 888876 6799999986432   1111110  0001         123578999999998 99999


Q ss_pred             CCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          153 TLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       153 ~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      ..++.|.++|...   +..+..                  ..|.++++ +++| .|||++..++.|..++...
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAA------------------PESLAVLF-NPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEEC------------------SSCCCEEE-ETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCEEEEEECCCCcEEEEEEc------------------CCCceEEE-CCCCCEEEEEECCCCeEEEEECCC
Confidence            9889999999755   333321                  12456775 4555 5999999999999999874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.48  E-value=4.9e-06  Score=82.26  Aligned_cols=131  Identities=10%  Similarity=0.056  Sum_probs=90.5

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccC-CccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQ-GYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~-G~~G~~dG~~~~a  132 (486)
                      .+++...|.++.++.-+..  .++.|++++ ++.||+++..+++|.++|.++.     +++. ++. + .+         
T Consensus        47 ~~iD~~tg~v~~~i~l~~~--~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~-----~v~~-~i~~g-~~---------  107 (266)
T 2iwa_A           47 RQVALQTGKVENIHKMDDS--YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTL-----SNIK-NFTHQ-MK---------  107 (266)
T ss_dssp             EEEETTTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEETTCSEEEEEETTTT-----EEEE-EEECC-SS---------
T ss_pred             EEEECCCCCEEEEEecCCC--cceEEEEEe-CCEEEEEEecCCEEEEEECCCC-----cEEE-EEECC-CC---------
Confidence            4478888888887764432  346788887 4589999999999999998742     2221 110 1 01         


Q ss_pred             ccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          133 RFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                         .+.||+.| .+.|||+| +.++|.+||+..   +.++.-+..           ...+..|+++.++  +|.||++..
T Consensus       108 ---~g~glt~D-g~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~-----------~~p~~~~nele~~--dg~lyvn~~  169 (266)
T 2iwa_A          108 ---DGWGLATD-GKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN-----------GHRVIRLNELEYI--NGEVWANIW  169 (266)
T ss_dssp             ---SCCEEEEC-SSSEEEEC-SSSEEEEECTTTCCEEEEEECEET-----------TEECCCEEEEEEE--TTEEEEEET
T ss_pred             ---CeEEEEEC-CCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC-----------CcccccceeEEEE--CCEEEEecC
Confidence               23455554 23599999 688999999987   344433210           0234568898866  689999999


Q ss_pred             CCCeEEEEECCC
Q 011435          210 GNAALRQISLNQ  221 (486)
Q Consensus       210 gn~rIr~id~~G  221 (486)
                      ..+.|.+||+..
T Consensus       170 ~~~~V~vID~~t  181 (266)
T 2iwa_A          170 QTDCIARISAKD  181 (266)
T ss_dssp             TSSEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence            999999999974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.48  E-value=1.1e-05  Score=78.95  Aligned_cols=124  Identities=16%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..|.++++++||+ ||+++..++.|..++.+... +....+... .....   +   ......|.+|+++++|+ |||++
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~-~~~~~---~---~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIV-KTIPA---D---YTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEE-ESSCT---T---CCSCCEEEEEEECTTSCEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeee-eecCC---C---CCCCCcceeEEECCCCCEEEEEe
Confidence            3688999999998 99999988998887765211 122111110 00000   0   01124689999999998 89999


Q ss_pred             CCCCEEEEEcCC--C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          153 TLNLAIRKIGDA--G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       153 ~~n~rIrkid~~--G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      ..++.|.+++.+  | +..+....             ..-..|.+++ ++++| .|||++..++.|..++.+
T Consensus       259 ~~~~~v~v~~~~~~g~~~~~~~~~-------------~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          259 RGYNTLAVFAVTADGHLTLIQQIS-------------TEGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ETTTEEEEEEECGGGCEEEEEEEE-------------CSSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCcEEEeEEEe-------------cCCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEe
Confidence            988998888754  3 22221100             0012478898 56666 599999999999888655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.45  E-value=2.4e-06  Score=83.64  Aligned_cols=125  Identities=19%  Similarity=0.198  Sum_probs=83.0

Q ss_pred             ccceeEEEccCCeEEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSEDGELFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|.+|++++||+||+++..  ++.|+.++.++..   .+.+...             ......|.+|+++++|+ ||++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~---~~~~~~~-------------~~~~~~p~~~a~spdg~~l~~~  103 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT---AHKLNTV-------------VAPGTPPAYVAVDEARQLVYSA  103 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE---EEEEEEE-------------EEESCCCSEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCc---EEEeeee-------------ecCCCCCEEEEECCCCCEEEEE
Confidence            46999999999999999864  5788888875322   2222110             00123799999999998 9999


Q ss_pred             eCCCCEEEEEcC--CC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          152 DTLNLAIRKIGD--AG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       152 D~~n~rIrkid~--~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      +..++.|..++.  +| +..+.....  .+  .++........|.+++ ++++|+||+++.++++|+.++.+
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~~--~~--~~p~~~~~~~~~~~~~-~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQH--SG--HGPRPEQDGSHIHYTD-LTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEEC--CC--CCSSTTCSSCCEEEEE-ECTTSCEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCeeecceeec--CC--CCCCccccCCCceEEE-ECCCCcEEEEeCCCCEEEEEEEC
Confidence            988888888774  34 322211000  00  0111111234577787 67888899999999999999987

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.44  E-value=3.9e-06  Score=85.99  Aligned_cols=125  Identities=17%  Similarity=0.152  Sum_probs=78.9

Q ss_pred             ccceeEEEcc----CCeEEEEEC--CCCEEEEEcCCCC-----cccccEEEecccCCccccCCCCccccccCCcceEEEc
Q 011435           75 VVPYKIRVSE----DGELFAVDE--VNSNIVKITPPLS-----QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD  143 (486)
Q Consensus        75 ~~P~GlAVd~----dG~LYVaD~--~n~rI~kid~~g~-----~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD  143 (486)
                      ..|.|||+++    +|.|||+.+  ..++|.|+..++.     ......++.-....           ........|+++
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-----------~~~H~g~~l~fg  148 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-----------GVIHNGGRIAFG  148 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-----------CSSCCCCCEEEC
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-----------CCCccCccccCC
Confidence            3589999998    488999764  5679999987641     11223333321111           112356789999


Q ss_pred             CCCCEEEEeC-------------CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          144 DKGNLYVADT-------------LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       144 ~dG~LYVAD~-------------~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      ++|.|||+-.             ..++|+||+++| +.  .++     -|.+...-..-+.+|.+++ .+++|.||++|.
T Consensus       149 pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip--~~n-----Pf~~~~i~a~G~RNp~Gla-~dp~G~L~~~d~  220 (347)
T 3das_A          149 PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA--PGN-----PFPGSPVYSYGHRNVQGLA-WDDKQRLFASEF  220 (347)
T ss_dssp             TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC--TTC-----SSTTCCEEEBCCSBCCEEE-ECTTCCEEEEEC
T ss_pred             CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc--CCC-----CCCCCeEEeeCCCCcceEE-ECCCCCEEEEec
Confidence            9999999942             357899999987 21  000     0100000111267899998 677999999998


Q ss_pred             CCC---eEEEEE
Q 011435          210 GNA---ALRQIS  218 (486)
Q Consensus       210 gn~---rIr~id  218 (486)
                      +..   .|.++.
T Consensus       221 g~~~~deln~i~  232 (347)
T 3das_A          221 GQDTWDELNAIK  232 (347)
T ss_dssp             CSSSCEEEEEEC
T ss_pred             CCCCCceeeEEc
Confidence            764   455554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.43  E-value=2.8e-06  Score=86.23  Aligned_cols=139  Identities=13%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             ccceeEEEccCCeEEEEECC-------------CCEEEEEcCCCCcccccEEEecccCCcccc--CCCCccccccCCcce
Q 011435           75 VVPYKIRVSEDGELFAVDEV-------------NSNIVKITPPLSQYSRGRLVAGSFQGYTGH--VDGKPNEARFNHPKG  139 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~-------------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~--~dG~~~~a~Ln~P~G  139 (486)
                      .+|.+|++++||.|||+...             .++|+||+++|+.      ..++.  ..+.  .........+.+|.|
T Consensus       130 h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~------p~~np--f~~~~~~~~~i~a~G~rnp~g  201 (353)
T 2g8s_A          130 HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI------PDDNP--FIKESGVRAEIWSYGIRNPQG  201 (353)
T ss_dssp             CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC------CTTCT--TTTSTTSCTTEEEECCSEEEE
T ss_pred             ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC------CCCCC--CcCCCCCCccEEEEcCcCccc
Confidence            45889999999999999643             3589999998642      11110  0000  000112234788999


Q ss_pred             EEEcC-CCCEEEEeCCCC---EEEEEcCCCce---EEcCCCC--C----------CCCcCCCCccccccCCCceeEEEcC
Q 011435          140 VTMDD-KGNLYVADTLNL---AIRKIGDAGVT---TIAGGKS--N----------VAGFRDGPSEDAKFSNDFDVVYVRP  200 (486)
Q Consensus       140 IavD~-dG~LYVAD~~n~---rIrkid~~Gv~---tiaGg~~--g----------~~G~~DG~~~~a~f~~P~gIa~vd~  200 (486)
                      |++|+ +|.||++|.+.+   .|.++...+-.   .+.++..  +          ..++..-...-.....|.|+++...
T Consensus       202 l~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g  281 (353)
T 2g8s_A          202 MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNS  281 (353)
T ss_dssp             EEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECC
T ss_pred             eEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECC
Confidence            99999 899999998753   56555543310   0011000  0          0000000000001236888886432


Q ss_pred             ------CCeEEEEeCCCCeEEEEECCC
Q 011435          201 ------TCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       201 ------~G~LYVaD~gn~rIr~id~~G  221 (486)
                            +|.|||+|..+++|+++++++
T Consensus       282 ~~fp~~~g~l~v~~~~~~~v~~~~~~~  308 (353)
T 2g8s_A          282 DKFPQWQQKLFIGALKDKDVIVMSVNG  308 (353)
T ss_dssp             SSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred             ccCcccCCcEEEEEccCCEEEEEEeCC
Confidence                  589999999999999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.40  E-value=3.3e-06  Score=83.49  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++...+.++.++..|     .|.|+.+.+||. ||++| +.++|.+||+.+... ..++.+|.    .|        .
T Consensus        89 ~viD~~t~~v~~~i~~g-----~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v-~~~I~Vg~----~~--------~  149 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ-----MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKL-IKKHNVKY----NG--------H  149 (266)
T ss_dssp             EEEETTTTEEEEEEECC-----SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCE-EEEEECEE----TT--------E
T ss_pred             EEEECCCCcEEEEEECC-----CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcE-EEEEEECC----CC--------c
Confidence            44666667777776554     255666666665 99999 678999999976431 11222331    01        1


Q ss_pred             ccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          133 RFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      .+..|+++.+. +|.||++....+.|.+||+..   +.+|.-++........   .......|+||++....+.|||+..
T Consensus       150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~---~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDE---GFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHT---TCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccc---cccccCceEEEEEcCCCCEEEEECC
Confidence            35578999988 789999999999999999865   3444321000000000   0112356899997666679999999


Q ss_pred             CCCeEEEEECCC
Q 011435          210 GNAALRQISLNQ  221 (486)
Q Consensus       210 gn~rIr~id~~G  221 (486)
                      ...+|.+|++..
T Consensus       226 ~~~~v~~i~l~~  237 (266)
T 2iwa_A          226 LWPKLFEIKLHL  237 (266)
T ss_dssp             TCSEEEEEEEEE
T ss_pred             CCCeEEEEEEec
Confidence            999999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.30  E-value=1.6e-05  Score=76.61  Aligned_cols=127  Identities=13%  Similarity=0.210  Sum_probs=87.2

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~  133 (486)
                      +++...+.....+..+   ...| ++++++||+ ||+++...+.|++++..+... ....+..                 
T Consensus        24 ~~d~~~~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~-----------------   81 (331)
T 3u4y_A           24 FFSTDTLEILNQITLG---YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQE-----------------   81 (331)
T ss_dssp             EEETTTCCEEEEEECC---CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEE-----------------
T ss_pred             EEeCcccceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEeccc-----------------
Confidence            3566677776666543   2246 999999997 999999889999999875431 0111111                 


Q ss_pred             cCCcce-EEEcCCCC-EEEEeCCCC--EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEE
Q 011435          134 FNHPKG-VTMDDKGN-LYVADTLNL--AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLL  205 (486)
Q Consensus       134 Ln~P~G-IavD~dG~-LYVAD~~n~--rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LY  205 (486)
                      -..|.. ++++++|+ ||+++..++  .|+++|.+.   +.++..+                 ..|.+++ ++++| .||
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~-~spdg~~l~  143 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-----------------YDAVGIA-ISPNGNGLI  143 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-----------------TTEEEEE-ECTTSSCEE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-----------------CCccceE-ECCCCCEEE
Confidence            125777 99999998 665544435  999999765   3333221                 2367887 56777 599


Q ss_pred             EEeCCCCe-EEEEECCC
Q 011435          206 VIDRGNAA-LRQISLNQ  221 (486)
Q Consensus       206 VaD~gn~r-Ir~id~~G  221 (486)
                      +++..++. |..++.+.
T Consensus       144 ~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A          144 LIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             EEEETTTTEEEEEEECT
T ss_pred             EEecCCCceEEEEEECC
Confidence            99998777 88887764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.30  E-value=2e-05  Score=77.69  Aligned_cols=118  Identities=13%  Similarity=0.216  Sum_probs=79.5

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..|.++++++||+ ||+++..++.|.+++.++.   ....+... ..         ....+..|.+|+++++|+ |||++
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g---~~~~~~~~-~~---------~~~~~~~~~~i~~spdg~~l~v~~  277 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG---MLDEIQTV-AA---------DTVNAQGSGDIHLSPDGKYLYASN  277 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETT---EEEEEEEE-ES---------CSSCCCCEEEEEECTTSSEEEEEE
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC---ceEEeEEE-ec---------CCCCCCCcccEEECCCCCEEEEEC
Confidence            4689999999997 9999988889999987532   22211110 00         011245688999999998 89999


Q ss_pred             CC-CCEEEEEcCC---C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          153 TL-NLAIRKIGDA---G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       153 ~~-n~rIrkid~~---G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      .. .+.|..++.+   | +..+....             . -..|.+++ ++++| .||+++..++.|..+..+
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~~~~~~-------------~-g~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTKVGYQL-------------T-GIHPRNFI-ITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEEEEEEE-------------C-SSCCCEEE-ECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEEEcCCCCcEEEeeEec-------------C-CCCCceEE-ECCCCCEEEEEECCCCCEEEEEEE
Confidence            88 7888876543   4 32221110             0 02578888 56666 599999888888886554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.26  E-value=6.2e-06  Score=86.99  Aligned_cols=118  Identities=9%  Similarity=0.079  Sum_probs=74.1

Q ss_pred             cceeEEEcc----CCeEEEEECC------------CCEEEEEcCCCC--cccccEEEecccCCccccCCCCccccccCCc
Q 011435           76 VPYKIRVSE----DGELFAVDEV------------NSNIVKITPPLS--QYSRGRLVAGSFQGYTGHVDGKPNEARFNHP  137 (486)
Q Consensus        76 ~P~GlAVd~----dG~LYVaD~~------------n~rI~kid~~g~--~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P  137 (486)
                      .+.|||+++    +|.|||+++.            .++|++++.+..  .....+++......           .....+
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-----------~~~H~~  146 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-----------SKDHQS  146 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-----------CSSCCE
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-----------CCCCCC
Confidence            356999998    7889999964            468999976432  11122333321111           123468


Q ss_pred             ceEEEcCCCCEEEEeCC--------------------------------CCEEEEEcCCC-c---eEEcCCCCCCCCcCC
Q 011435          138 KGVTMDDKGNLYVADTL--------------------------------NLAIRKIGDAG-V---TTIAGGKSNVAGFRD  181 (486)
Q Consensus       138 ~GIavD~dG~LYVAD~~--------------------------------n~rIrkid~~G-v---~tiaGg~~g~~G~~D  181 (486)
                      .+|++++||+|||+-..                                .++|.||+++| +   ..+.++. ...-|. 
T Consensus       147 ~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~-~~ei~a-  224 (454)
T 1cru_A          147 GRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGV-VSHIYT-  224 (454)
T ss_dssp             EEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTE-ECSEEE-
T ss_pred             CeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCC-cceEEE-
Confidence            99999999999999432                                36899999988 2   1111100 000111 


Q ss_pred             CCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          182 GPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       182 G~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                           .-+.+|.+++ .+++|.||++|.+..
T Consensus       225 -----~G~RNp~gla-~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          225 -----LGHRNPQGLA-FTPNGKLLQSEQGPN  249 (454)
T ss_dssp             -----BCCSEEEEEE-ECTTSCEEEEEECSS
T ss_pred             -----ECCCCcceEE-ECCCCCEEEEecCCC
Confidence                 1256899998 577899999997754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.24  E-value=4.3e-05  Score=73.63  Aligned_cols=125  Identities=12%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcc-cccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQY-SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~-~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|.++++++||+ ||+++..++.|.+++...... .....+..                 -..|.+|+++++|+ |||+
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----------------NNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----------------SSCCCCEEECTTSSEEEEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----------------CCCCceEEECCCCCEEEEE
Confidence            4599999999997 999999999999999864321 00111211                 13689999999999 9999


Q ss_pred             eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          152 DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       152 D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +...+.|.++|...  +..+........  .+.    ......+++++..+...|||+...++.|..++..+.
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGLL--IDP----RPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCC--CCC----GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EcCCCEEEEEECCCCceeeecccccccc--cCC----CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            98888999999764  322211000000  000    111122557754444469999999999999999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.23  E-value=2.2e-05  Score=77.29  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=78.5

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcCCCCccc----c-cEEE--ecccCCccccCCCCccccccCCcceEEEcCCCC-
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYS----R-GRLV--AGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-  147 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~----~-~~~v--aG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-  147 (486)
                      |+++++++||+ ||+++...+.|..++.+... +    . ....  .....           ...-..|.+++++++|+ 
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~-~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~  224 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNA-NADNKEKFLTKGTPEAFK-----------VAPGSGPRHLIFNSDGKF  224 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTC-CTTTCCCCEEEEEEEEEE-----------CCTTCCEEEEEECTTSSE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC-Ccccccceeeccccccee-----------cCCCCCCeEEEEcCCCCE
Confidence            47799999997 99999988888877654221 1    1 1110  00000           00123688999999998 


Q ss_pred             EEEEeCCCCEEEEEcCC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCC-CCeEEEEECC
Q 011435          148 LYVADTLNLAIRKIGDA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRG-NAALRQISLN  220 (486)
Q Consensus       148 LYVAD~~n~rIrkid~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g-n~rIr~id~~  220 (486)
                      |||++..++.|.+++.+ | +..+.....          ....+..|.+++ ++++| .||+++.+ +++|..++.+
T Consensus       225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~----------~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          225 AYLINEIGGTVIAFRYADGMLDEIQTVAA----------DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEETTTCEEEEEEEETTEEEEEEEEES----------CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEEEcCCCCeEEEEEecCCceEEeEEEec----------CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEc
Confidence            99999888999988854 3 322211000          011234577887 56666 59999999 8899998875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.19  E-value=0.00018  Score=68.79  Aligned_cols=121  Identities=11%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEE--EecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRL--VAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV  150 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~--vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV  150 (486)
                      ..|.+++++++|+ ||+++..++.|..++.+... +....  ......  .+       ......|.+|+++++|+ |||
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~--~~-------~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMP--EN-------FSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSC--TT-------CCSCCCEEEEEECTTSSEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccC--cc-------ccccCCccceEECCCCCEEEE
Confidence            4688999999998 89999888999999875311 11211  111100  00       11234678999999997 899


Q ss_pred             EeCCCCEEEEEcCC--C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          151 ADTLNLAIRKIGDA--G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       151 AD~~n~rIrkid~~--G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      ++..++.|.+++.+  +  ...+....              .-..|.+++ .+++| .||+++..++.|..++.+
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~--------------~~~~~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQP--------------TETQPRGFN-VDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEE--------------CSSSCCCEE-ECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeec--------------CCCccceEE-ECCCCCEEEEecCCCCeEEEEEEc
Confidence            99888999998865  2  22221100              001277887 45666 599999888888888554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.19  E-value=9.9e-06  Score=87.91  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             CccceeEEEcc-CCeEEEEECCC---------------------CEEEEEcCCCCc------ccccEEEecccCCcc---
Q 011435           74 GVVPYKIRVSE-DGELFAVDEVN---------------------SNIVKITPPLSQ------YSRGRLVAGSFQGYT---  122 (486)
Q Consensus        74 ~~~P~GlAVd~-dG~LYVaD~~n---------------------~rI~kid~~g~~------~~~~~~vaG~~~G~~---  122 (486)
                      +..|+++++++ +|+|||+-+.|                     +.|+++..++..      ...+.+++|......   
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            36899999997 78999986542                     679999764321      012224445421110   


Q ss_pred             -ccCCCCccccccCCcceEEEcCCCCEEE-EeCC-----------CCEEEEEcCC-C-ceEEcCCCCCCCCcCCCCcccc
Q 011435          123 -GHVDGKPNEARFNHPKGVTMDDKGNLYV-ADTL-----------NLAIRKIGDA-G-VTTIAGGKSNVAGFRDGPSEDA  187 (486)
Q Consensus       123 -G~~dG~~~~a~Ln~P~GIavD~dG~LYV-AD~~-----------n~rIrkid~~-G-v~tiaGg~~g~~G~~DG~~~~a  187 (486)
                       +...+......|+.|++|++|++|+||| +|..           ++.|++++++ | +..++.+.              
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------------  528 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------  528 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--------------
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--------------
Confidence             0001111245799999999999999999 7863           5689999985 5 77766421              


Q ss_pred             ccCCCceeEEEcCCCeEEEEe
Q 011435          188 KFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       188 ~f~~P~gIa~vd~~G~LYVaD  208 (486)
                      .+..|+|+++.++...|||+-
T Consensus       529 ~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             TTCEEEEEEECTTSSEEEEEE
T ss_pred             CCccccCCEECCCCCEEEEEE
Confidence            134689999766666888875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.18  E-value=0.0001  Score=72.35  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=90.4

Q ss_pred             CcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcc-cccEEEe---cccCCcccc------------
Q 011435           61 GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQY-SRGRLVA---GSFQGYTGH------------  124 (486)
Q Consensus        61 G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~-~~~~~va---G~~~G~~G~------------  124 (486)
                      |.+..++.-+.  ...++||+++++|.+||++-.+++|++++.+.... .....+.   +......|+            
T Consensus        58 g~v~~~i~l~g--~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L  135 (255)
T 3qqz_A           58 GDLIRTIPLDF--VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF  135 (255)
T ss_dssp             CCEEEEEECSS--CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE
T ss_pred             CCEEEEEecCC--CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE
Confidence            66666664221  24699999999999999998889988876432110 0001110   100000000            


Q ss_pred             -------------CCCC-----c---------cccccCCcceEEEcC-CCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCC
Q 011435          125 -------------VDGK-----P---------NEARFNHPKGVTMDD-KGNLYVADTLNLAIRKIGDAG-VTTIAGGKSN  175 (486)
Q Consensus       125 -------------~dG~-----~---------~~a~Ln~P~GIavD~-dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g  175 (486)
                                   .+|.     .         ....+..+.+|++|+ .|.|||....+++|..+|.+| +.....-.. 
T Consensus       136 ~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~-  214 (255)
T 3qqz_A          136 WFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTK-  214 (255)
T ss_dssp             EEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECST-
T ss_pred             EEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCC-
Confidence                         0010     0         011244678999998 566888888888999999888 322211100 


Q ss_pred             CCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          176 VAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       176 ~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                        |+   ......+..|.||+ +|++|+|||+...| .+++|...+
T Consensus       215 --g~---~~l~~~~~qpEGia-~d~~G~lyIvsE~n-~~y~f~~~~  253 (255)
T 3qqz_A          215 --GS---RGLSHNIKQAEGVA-MDASGNIYIVSEPN-RFYRFTPQS  253 (255)
T ss_dssp             --TG---GGCSSCCCSEEEEE-ECTTCCEEEEETTT-EEEEEEC--
T ss_pred             --cc---CCcccccCCCCeeE-ECCCCCEEEEcCCc-eEEEEEecC
Confidence              11   01123477899998 79999999998885 999998764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.14  E-value=8.5e-05  Score=72.52  Aligned_cols=132  Identities=18%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             CcEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           53 GNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        53 gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      -.+++...|.+..++.-...  .+..|++++ ++.||++++.+++|+++|.++.     ..+ +++. ..+         
T Consensus        45 v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl-----~~~-~ti~-~~~---------  105 (243)
T 3mbr_X           45 VRKVDLETGRILQRAEVPPP--YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATL-----TPR-ARFR-YPG---------  105 (243)
T ss_dssp             EEEEETTTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEESSSSEEEEEETTTT-----EEE-EEEE-CSS---------
T ss_pred             EEEEECCCCCEEEEEeCCCC--cceeEEEEe-CCEEEEEEeeCCEEEEEECCcC-----cEE-EEEe-CCC---------
Confidence            34578888888887754333  235777876 4689999999999999998642     221 1110 001         


Q ss_pred             ccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          133 RFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                         .+-||+.| .+.||++|. .++|+.+|+..   +.++.-+.       ++    ..+...+.+.++  +|.||+...
T Consensus       106 ---~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~-------~g----~~~~~lNeLe~~--~G~lyanvw  167 (243)
T 3mbr_X          106 ---EGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTA-------GG----RPLDNLNELEWV--NGELLANVW  167 (243)
T ss_dssp             ---CCCEEEEC-SSCEEEECS-SSEEEEECTTTCCEEEEEECEE-------TT----EECCCEEEEEEE--TTEEEEEET
T ss_pred             ---CceEEeeC-CCEEEEECC-CCeEEEEeCCCCeEEEEEEEcc-------CC----cccccceeeEEe--CCEEEEEEC
Confidence               34677766 357999995 88999999987   34443221       01    124455677654  789999999


Q ss_pred             CCCeEEEEECCC
Q 011435          210 GNAALRQISLNQ  221 (486)
Q Consensus       210 gn~rIr~id~~G  221 (486)
                      ..+.|.+||+..
T Consensus       168 ~s~~I~vIDp~t  179 (243)
T 3mbr_X          168 LTSRIARIDPAS  179 (243)
T ss_dssp             TTTEEEEECTTT
T ss_pred             CCCeEEEEECCC
Confidence            999999999874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.12  E-value=5.6e-05  Score=74.64  Aligned_cols=131  Identities=14%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~  133 (486)
                      .+++...|.++.++.-+..  .+..||+++. +.||+++..++++.++|+++..  ....+.-     .+          
T Consensus        68 ~~vD~~Tgkv~~~~~l~~~--~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~-----~~----------  127 (262)
T 3nol_A           68 RKVDIESGKTLQQIELGKR--YFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLR--QVRSFNY-----DG----------  127 (262)
T ss_dssp             EEECTTTCCEEEEEECCTT--CCEEEEEEET-TEEEEEESSSSEEEEEETTTCC--EEEEEEC-----SS----------
T ss_pred             EEEECCCCcEEEEEecCCc--cceeEEEEeC-CEEEEEEeeCCEEEEEECccCc--EEEEEEC-----CC----------
Confidence            3366667777766654332  2357788864 5899999999999999987432  1111110     00          


Q ss_pred             cCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC
Q 011435          134 FNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG  210 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  210 (486)
                        .+.|++.| .+.||++|. .++|+++|+..   +.+|.-+.       +|    ..+..++.+.++  +|.||+....
T Consensus       128 --eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~-------~g----~~~~~lNELe~~--~G~lyan~w~  190 (262)
T 3nol_A          128 --EGWGLTHN-DQYLIMSDG-TPVLRFLDPESLTPVRTITVTA-------HG----EELPELNELEWV--DGEIFANVWQ  190 (262)
T ss_dssp             --CCCCEEEC-SSCEEECCS-SSEEEEECTTTCSEEEEEECEE-------TT----EECCCEEEEEEE--TTEEEEEETT
T ss_pred             --CceEEecC-CCEEEEECC-CCeEEEEcCCCCeEEEEEEecc-------CC----ccccccceeEEE--CCEEEEEEcc
Confidence              34577776 356999995 78999999987   34443221       00    224556777765  6899999999


Q ss_pred             CCeEEEEECCC
Q 011435          211 NAALRQISLNQ  221 (486)
Q Consensus       211 n~rIr~id~~G  221 (486)
                      .+.|.+||+..
T Consensus       191 ~~~I~vIDp~t  201 (262)
T 3nol_A          191 TNKIVRIDPET  201 (262)
T ss_dssp             SSEEEEECTTT
T ss_pred             CCeEEEEECCC
Confidence            99999999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.09  E-value=3.6e-05  Score=76.19  Aligned_cols=128  Identities=11%  Similarity=0.045  Sum_probs=84.6

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      ++...|.++..+. ...  .+..||+++. +.||++++.+++|.++|.++.     .++ +++. ..+            
T Consensus        80 iD~~Tgkv~~~~l-~~~--~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl-----~~~-~ti~-~~~------------  136 (268)
T 3nok_A           80 LSLESAQPVWMER-LGN--IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP-----QRE-RTTR-YSG------------  136 (268)
T ss_dssp             CCSSCSSCSEEEE-CTT--CCEEEEEECS-SCEEEEESSSCEEEEEETTTT-----EEE-EEEE-CSS------------
T ss_pred             EECCCCcEEeEEC-CCC--cceeEEEEeC-CEEEEEEccCCEEEEEECCcC-----cEE-EEEe-CCC------------
Confidence            4555665555552 221  2357788864 479999999999999998642     222 1110 001            


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                      .+.||+.|. +.||++| +.++|+++|+..   +.+|.-+.       ++    ..+..++.+.++  +|.||+.....+
T Consensus       137 eGwGLt~Dg-~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~-------~g----~~v~~lNeLe~~--dG~lyanvw~s~  201 (268)
T 3nok_A          137 EGWGLCYWN-GKLVRSD-GGTMLTFHEPDGFALVGAVQVKL-------RG----QPVELINELECA--NGVIYANIWHSS  201 (268)
T ss_dssp             CCCCEEEET-TEEEEEC-SSSEEEEECTTTCCEEEEEECEE-------TT----EECCCEEEEEEE--TTEEEEEETTCS
T ss_pred             ceeEEecCC-CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC-------CC----cccccccccEEe--CCEEEEEECCCC
Confidence            346788763 4699999 589999999887   34443221       01    224556778765  789999999999


Q ss_pred             eEEEEECCC
Q 011435          213 ALRQISLNQ  221 (486)
Q Consensus       213 rIr~id~~G  221 (486)
                      .|.+||+..
T Consensus       202 ~I~vIDp~T  210 (268)
T 3nok_A          202 DVLEIDPAT  210 (268)
T ss_dssp             EEEEECTTT
T ss_pred             eEEEEeCCC
Confidence            999999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.09  E-value=2.3e-05  Score=82.28  Aligned_cols=96  Identities=11%  Similarity=0.000  Sum_probs=67.5

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCCccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQGYTG  123 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G  123 (486)
                      ++++...+.++.++..|.    .| ||++++||+ |||++.         ..+.|.+||..+... ..++.++.. +.  
T Consensus       102 sVID~~t~~vv~~I~vG~----~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~v~g~-~r--  172 (426)
T 3c75_H          102 FVIDGSTGRILGMTDGGF----LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIELPDA-PR--  172 (426)
T ss_dssp             EEEETTTTEEEEEEEECS----SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTC-CC--
T ss_pred             EEEECCCCEEEEEEECCC----CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEECCCc-cc--
Confidence            446677777777777664    49 999999998 999986         356799999875431 111222200 00  


Q ss_pred             cCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG  165 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G  165 (486)
                             ......|.++++++||+ |||++.. .+.|.+||...
T Consensus       173 -------~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          173 -------FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             -------CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             -------cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence                   00124799999999997 9999975 78999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.08  E-value=0.00038  Score=68.56  Aligned_cols=126  Identities=17%  Similarity=0.302  Sum_probs=88.7

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ++...+..+..+..+.    .+.+++++++|+ ||++....+.|..++..+..   .......                -
T Consensus        59 ~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~----------------~  115 (391)
T 1l0q_A           59 IDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTVKT----------------G  115 (391)
T ss_dssp             EETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEEC----------------S
T ss_pred             EECCCCeEEEEEECCC----CccceEECCCCCEEEEEECCCCEEEEEECCCCe---EEEEEeC----------------C
Confidence            4445555555544333    589999999988 88999888999999987432   1111110                0


Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeC
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR  209 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~  209 (486)
                      ..+.+++++++|+ ||++...++.|+.+|...   +..+..+                 ..|.++++ .++| .||++..
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~-~~dg~~l~~~~~  177 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-----------------RSPKGIAV-TPDGTKVYVANF  177 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-----------------SSEEEEEE-CTTSSEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-----------------CCcceEEE-CCCCCEEEEEeC
Confidence            1478999999998 889999899999999755   3333322                 13567774 5555 6889999


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      .++.|+.+++...
T Consensus       178 ~~~~v~~~d~~~~  190 (391)
T 1l0q_A          178 DSMSISVIDTVTN  190 (391)
T ss_dssp             TTTEEEEEETTTT
T ss_pred             CCCEEEEEECCCC
Confidence            9999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.07  E-value=6.6e-05  Score=74.09  Aligned_cols=141  Identities=11%  Similarity=0.066  Sum_probs=88.0

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      ++..+...+.++..+.    .+.|++.|. +.||++|. .++|.++|+.+... ..++-++.        +|    ..+.
T Consensus       112 ~D~~t~~~~~ti~~~~----eG~glt~dg-~~L~~SdG-s~~i~~iDp~T~~v-~~~I~V~~--------~g----~~~~  172 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDG----EGWGLTHND-QYLIMSDG-TPVLRFLDPESLTP-VRTITVTA--------HG----EELP  172 (262)
T ss_dssp             EETTTCCEEEEEECSS----CCCCEEECS-SCEEECCS-SSEEEEECTTTCSE-EEEEECEE--------TT----EECC
T ss_pred             EECccCcEEEEEECCC----CceEEecCC-CEEEEECC-CCeEEEEcCCCCeE-EEEEEecc--------CC----cccc
Confidence            4555566666655432    245666542 45999995 78999999975431 11122221        01    1345


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                      .++.+.+. +|.||++.+..+.|.+||+..  | .+|.-..    .+.+..........|+|||+....++|||+...=-
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~----L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG----ILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT----GGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc----CccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            67778877 789999999999999999865  3 3442210    00000001122457899998777889999998777


Q ss_pred             eEEEEECC
Q 011435          213 ALRQISLN  220 (486)
Q Consensus       213 rIr~id~~  220 (486)
                      ++.+|.+.
T Consensus       248 ~~~ev~~~  255 (262)
T 3nol_A          248 KVFEITLT  255 (262)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            78777754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.06  E-value=8.5e-05  Score=75.85  Aligned_cols=130  Identities=10%  Similarity=-0.028  Sum_probs=82.7

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCCccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQGYTG  123 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G  123 (486)
                      .+++...+.++.++..|.    .| +|++++||+ |||++.         ..+.|.+||..+... ..++-++.    .+
T Consensus        50 ~v~D~~t~~~~~~i~~g~----~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~----~~  119 (373)
T 2mad_H           50 WVLDAGSGSILGHVNGGF----LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPD----AP  119 (373)
T ss_pred             EEEECCCCeEEEEecCCC----CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCC----cc
Confidence            456777777777766653    48 999999997 999985         246789999863210 01111110    00


Q ss_pred             cCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC---ceE-EcCCCCCCCCcCCCCccccccCCCceeEE
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG---VTT-IAGGKSNVAGFRDGPSEDAKFSNDFDVVY  197 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G---v~t-iaGg~~g~~G~~DG~~~~a~f~~P~gIa~  197 (486)
                      .      ......|.++++++||+ |||++.. .+.|.+|| ..   +.+ +.                    .|.++.+
T Consensus       120 ~------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--------------------~~~~~~~  172 (373)
T 2mad_H          120 R------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--------------------SPTCYHI  172 (373)
T ss_pred             c------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------------------CCceEEE
Confidence            0      00014699999999998 9999865 68999999 66   233 21                    1222333


Q ss_pred             EcCCCeEEEEeCCCCeEEEEECC
Q 011435          198 VRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       198 vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .....++|++...++++..|+..
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~~  195 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEECC
Confidence            34445677777777777777773

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.04  E-value=0.00029  Score=70.13  Aligned_cols=129  Identities=16%  Similarity=0.103  Sum_probs=78.3

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCC-CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPP-LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~-g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|.++++++||+ ||++|.+.++|..++.+ ..   +...+ +......          .-..|.+|+++++|+ |||+
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g---~~~~~-~~~~~~~----------~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASG---EVELV-GSVDAPD----------PGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS---CEEEE-EEEECSS----------TTCCEEEEEECTTSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC---CEEEe-eeEecCC----------CCCCCCEeEECCCCCEEEEE
Confidence            4689999999997 89999888899999875 22   22211 1100000          012599999999997 8999


Q ss_pred             eCCCCEEEEEc--C-CC-ce----EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCC-----eEEEE
Q 011435          152 DTLNLAIRKIG--D-AG-VT----TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNA-----ALRQI  217 (486)
Q Consensus       152 D~~n~rIrkid--~-~G-v~----tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~-----rIr~i  217 (486)
                      +..++.|..++  . +| +.    ++.....+..+.. +..  .....|.++++++++| .||+++.+.+     +|..+
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD-PET--GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC-TTT--SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc-ccc--ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence            98888887764  3 34 32    1211100000000 000  0112477887245666 6999998765     88888


Q ss_pred             ECC
Q 011435          218 SLN  220 (486)
Q Consensus       218 d~~  220 (486)
                      +.+
T Consensus       288 ~~~  290 (365)
T 1jof_A          288 KLR  290 (365)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.02  E-value=0.00044  Score=68.10  Aligned_cols=126  Identities=17%  Similarity=0.332  Sum_probs=89.2

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ++...+..+..+..+.    .+.+++++++|. ||++...++.|..++.....   .......                -
T Consensus        17 ~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~---~~~~~~~----------------~   73 (391)
T 1l0q_A           17 IDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATVPA----------------G   73 (391)
T ss_dssp             EETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEEEC----------------S
T ss_pred             EECCCCeEEEEeecCC----CcceEEECCCCCEEEEECCCCCeEEEEECCCCe---EEEEEEC----------------C
Confidence            5556666666555432    389999999997 78998888999999986432   2111110                0


Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeC
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR  209 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~  209 (486)
                      ..+.+++++++|+ ||++...++.|+++|...   +..+...                 ..+.+++ ..++| .||++..
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------------~~~~~~~-~s~dg~~l~~~~~  135 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------------KSPLGLA-LSPDGKKLYVTNN  135 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEE-ECTTSSEEEEEET
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----------------CCcceEE-ECCCCCEEEEEeC
Confidence            1588999999998 889998889999999775   3333221                 1356777 45555 5889999


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      .++.|+.++....
T Consensus       136 ~~~~v~~~d~~~~  148 (391)
T 1l0q_A          136 GDKTVSVINTVTK  148 (391)
T ss_dssp             TTTEEEEEETTTT
T ss_pred             CCCEEEEEECCCC
Confidence            8999999998753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.02  E-value=0.00017  Score=70.33  Aligned_cols=144  Identities=17%  Similarity=0.141  Sum_probs=92.7

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~  133 (486)
                      .+++..+...+.++..+.    .+.||+.| .+.||++|. .++|..+|+.+... ..++-++.    .|        ..
T Consensus        88 ~v~D~~tl~~~~ti~~~~----~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~-~~~I~V~~----~g--------~~  148 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPG----EGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQ-VGSIKVTA----GG--------RP  148 (243)
T ss_dssp             EEEETTTTEEEEEEECSS----CCCEEEEC-SSCEEEECS-SSEEEEECTTTCCE-EEEEECEE----TT--------EE
T ss_pred             EEEECCcCcEEEEEeCCC----CceEEeeC-CCEEEEECC-CCeEEEEeCCCCeE-EEEEEEcc----CC--------cc
Confidence            346666777777776543    25666654 346999995 78999999975431 11122221    11        12


Q ss_pred             cCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC--c-eEEcCCCCCCCCcCCCCc-cccccCCCceeEEEcCCCeEEEEeC
Q 011435          134 FNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPS-EDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G--v-~tiaGg~~g~~G~~DG~~-~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      +...+.|... +|.||++.+..+.|.+||+..  | .+|.-.  +  .+.+... .......|+|||+....++|||+.-
T Consensus       149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~--~--l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQ--A--LVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECG--G--GSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECC--c--CccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4466778876 789999999999999999865  3 333221  0  0000000 0123457899998777889999998


Q ss_pred             CCCeEEEEECCC
Q 011435          210 GNAALRQISLNQ  221 (486)
Q Consensus       210 gn~rIr~id~~G  221 (486)
                      .=.++.+|.+..
T Consensus       224 ~wp~~~~v~~~~  235 (243)
T 3mbr_X          224 RWPMLYEIRLTP  235 (243)
T ss_dssp             TCSEEEEEEECC
T ss_pred             CCCcEEEEEEec
Confidence            878888888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.97  E-value=0.00026  Score=67.47  Aligned_cols=132  Identities=12%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      ++...+..+.++..+... ..|.++++++||+ ||+++...+.|.+++..+..  ....+...   ..+        ..-
T Consensus        16 ~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~---~~~--------~~~   81 (337)
T 1pby_B           16 IDTEKMAVDKVITIADAG-PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLS---TPE--------ERV   81 (337)
T ss_dssp             EETTTTEEEEEEECTTCT-TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECC---BTT--------EEE
T ss_pred             EECCCCcEEEEEEcCCCC-CCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcC---Ccc--------ccc
Confidence            566666666665533210 0389999999995 89999988999999986432  11112110   000        001


Q ss_pred             CCcceEEEcCCCC-EEEEeC-----------CCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc
Q 011435          135 NHPKGVTMDDKGN-LYVADT-----------LNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR  199 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~-----------~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd  199 (486)
                      ..|.+++++++|+ ||+++.           .++.|+++|..+   +..+..+                 ..|.+++ ++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~-~s  143 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----------------RQITMLA-WA  143 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----------------SSCCCEE-EC
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----------------CCcceeE-EC
Confidence            2588999999996 999962           358999999766   2333221                 1366777 45


Q ss_pred             CCCe-EEEEeCCCCeEEEEECCCC
Q 011435          200 PTCS-LLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       200 ~~G~-LYVaD~gn~rIr~id~~G~  222 (486)
                      ++|+ ||++   ++.|..+++...
T Consensus       144 ~dg~~l~~~---~~~i~~~d~~~~  164 (337)
T 1pby_B          144 RDGSKLYGL---GRDLHVMDPEAG  164 (337)
T ss_dssp             TTSSCEEEE---SSSEEEEETTTT
T ss_pred             CCCCEEEEe---CCeEEEEECCCC
Confidence            5554 8888   467888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.93  E-value=0.00076  Score=64.36  Aligned_cols=122  Identities=15%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEe-cccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|.+++++++|+ ||+++..++.|..++.+..  +....+. .......           -..|.+++++++|+ ||++
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDD--GHLVAQDPAEVTTVE-----------GAGPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT--SCEEEEEEEEEECST-----------TCCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEECCCCCEEEEecCCCCEEEEEEecCC--CceeeecccccccCC-----------CCCcceEEECCCCCEEEEE
Confidence            3589999999996 9999977889999887531  1122111 0000000           12588999999998 9999


Q ss_pred             eCCCCEEEEEcCC---C-ce---EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          152 DTLNLAIRKIGDA---G-VT---TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       152 D~~n~rIrkid~~---G-v~---tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      +..++.|..++.+   | +.   .+....   .++       .....|.+++ .+++| .||+++..++.|.+++.+
T Consensus       196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~---~~~-------~~~~~~~~i~-~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          196 NELNSSVDVWELKDPHGNIECVQTLDMMP---ENF-------SDTRWAADIH-ITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSC---TTC-------CSCCCEEEEE-ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEEecCCCCcEEEEeeccccC---ccc-------cccCCccceE-ECCCCCEEEEEecCCCEEEEEEEc
Confidence            9888999999864   3 22   121110   010       1123466787 45666 799999999999999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.93  E-value=0.00046  Score=73.80  Aligned_cols=137  Identities=9%  Similarity=0.049  Sum_probs=90.0

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcC--CCCcccccEEEecccCCccccCCCCcccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITP--PLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~--~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      ++...+..+.++..|..    |+++++++||+ ||+++.. +.|.++|.  ....  ....+..      |         
T Consensus       164 ~D~~t~~~~~~i~~g~~----~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~--~~~~i~~------g---------  221 (543)
T 1nir_A          164 VDGDSKKIVKVIDTGYA----VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPT--KVAEIKI------G---------  221 (543)
T ss_dssp             EETTTCCEEEEEECSTT----EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCE--EEEEEEC------C---------
T ss_pred             EECCCceEEEEEecCcc----cceEEECCCCCEEEEECCC-CeEEEEECcCCCCc--EEEEEec------C---------
Confidence            45555666666554433    89999999997 8999876 89999998  3211  1111111      1         


Q ss_pred             ccCCcceEEEcC----CCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeE
Q 011435          133 RFNHPKGVTMDD----KGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSL  204 (486)
Q Consensus       133 ~Ln~P~GIavD~----dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~L  204 (486)
                        ..|.+|++++    +|+ |||++...+.|..+|...   +.++......    .++.. -..-..+..|++...++.+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~~~~-~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQT-YHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCC-EESCCCEEEEEECSSSSEE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----cCccc-cccCCceEEEEECCCCCEE
Confidence              1589999999    998 999998789999998665   4444332100    00000 0001245677755556789


Q ss_pred             EEEeCCCCeEEEEECCC
Q 011435          205 LVIDRGNAALRQISLNQ  221 (486)
Q Consensus       205 YVaD~gn~rIr~id~~G  221 (486)
                      ||+...+++|+.++...
T Consensus       295 ~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             EEEETTTTEEEEEECTT
T ss_pred             EEEECCCCeEEEEEecC
Confidence            99999999999999874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.91  E-value=4.4e-05  Score=78.51  Aligned_cols=132  Identities=8%  Similarity=-0.089  Sum_probs=87.9

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCCccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQGYTG  123 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G  123 (486)
                      ++++...+.++.++..|..    | ++++++||. |||+++         ..+.|.+||+.+... ..++.+|.   .. 
T Consensus        49 svID~~t~~v~~~i~vG~~----P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~---~~-  118 (368)
T 1mda_H           49 WVSCAGCGVTLGHSLGAFL----S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPD---AP-  118 (368)
T ss_dssp             EEEETTTTEEEEEEEECTT----C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETT---SC-
T ss_pred             EEEECCCCeEEEEEeCCCC----C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCC---cc-
Confidence            4788889999999887754    9 999999987 999984         357899999975431 11222321   00 


Q ss_pred             cCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEE--EcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEc
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRK--IGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR  199 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrk--id~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd  199 (486)
                            .......|.+|++++||+ |||++.. .+.|.+  ||...+.++.-+     +             ...+  ..
T Consensus       119 ------~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~-----~-------------~~~~--~p  172 (368)
T 1mda_H          119 ------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA-----S-------------CFHI--HP  172 (368)
T ss_dssp             ------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS-----S-------------CCCC--EE
T ss_pred             ------ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECC-----C-------------ceEE--cc
Confidence                  001124799999999997 9999975 678888  887654444221     0             0111  23


Q ss_pred             CCCeEEEEeCCCCeEEEEECCC
Q 011435          200 PTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       200 ~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ....+|++...++++..++.+.
T Consensus       173 ~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          173 GAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCS
T ss_pred             CCCeEEEEEcCCCCEEEEECcc
Confidence            3345777777777777777764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.87  E-value=0.00051  Score=74.38  Aligned_cols=87  Identities=10%  Similarity=0.083  Sum_probs=63.7

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCC--CCcccccEEEecccCCccccCCCCccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPP--LSQYSRGRLVAGSFQGYTGHVDGKPNE  131 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~--g~~~~~~~~vaG~~~G~~G~~dG~~~~  131 (486)
                      +++...+.++.++..|.    .|+++++++||+ |||++. .+.|.+||..  ... -..++..|.              
T Consensus       181 viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~-~v~~i~~G~--------------  240 (567)
T 1qks_A          181 LIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPT-TVAEIKIGS--------------  240 (567)
T ss_dssp             EEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCC-EEEEEECCS--------------
T ss_pred             EEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCc-EeEEEecCC--------------
Confidence            36666677777776554    489999999998 899874 5699999984  211 011122221              


Q ss_pred             cccCCcceEEEc----CCCC-EEEEeCCCCEEEEEcCCC
Q 011435          132 ARFNHPKGVTMD----DKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       132 a~Ln~P~GIavD----~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                          .|.+|+++    +||+ |||++...+.|.+||...
T Consensus       241 ----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          241 ----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             ----EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             ----CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence                59999999    5997 999999999999999765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.85  E-value=0.00025  Score=70.21  Aligned_cols=118  Identities=11%  Similarity=0.088  Sum_probs=81.2

Q ss_pred             cEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEE
Q 011435           62 YLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT  141 (486)
Q Consensus        62 ~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa  141 (486)
                      .++.++.-...  .+-.||.++ ++.||++....++|.++|+.+...-. .+ .+.  ..              ...||+
T Consensus        44 ~Vv~~~phd~~--~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-~~-l~~--~~--------------FgeGit  102 (268)
T 3nok_A           44 HIIREYPHATN--AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-ME-RLG--NI--------------FAEGLA  102 (268)
T ss_dssp             EEEEEEECCTT--CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-EE-ECT--TC--------------CEEEEE
T ss_pred             EEEEEEcCCCc--cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-EE-CCC--Cc--------------ceeEEE
Confidence            45555543332  234799997 57999999999999999998654211 11 221  11              125788


Q ss_pred             EcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435          142 MDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       142 vD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id  218 (486)
                      ++. +.||++++.++++.++|.+.   +.+|.-.                 ..+.+++.  +.+.||++| ++++|+.+|
T Consensus       103 ~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-----------------~eGwGLt~--Dg~~L~vSd-Gs~~l~~iD  161 (268)
T 3nok_A          103 SDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-----------------GEGWGLCY--WNGKLVRSD-GGTMLTFHE  161 (268)
T ss_dssp             ECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-----------------SCCCCEEE--ETTEEEEEC-SSSEEEEEC
T ss_pred             EeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-----------------CceeEEec--CCCEEEEEC-CCCEEEEEc
Confidence            874 47999999999999999877   4455322                 12456763  357899999 689999999


Q ss_pred             CCC
Q 011435          219 LNQ  221 (486)
Q Consensus       219 ~~G  221 (486)
                      +..
T Consensus       162 p~T  164 (268)
T 3nok_A          162 PDG  164 (268)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.84  E-value=0.00049  Score=68.46  Aligned_cols=132  Identities=12%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccE----EEecccCCccccCCCCccccccCCcceEE-EcCCCC-
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGR----LVAGSFQGYTGHVDGKPNEARFNHPKGVT-MDDKGN-  147 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~----~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa-vD~dG~-  147 (486)
                      ..|.++++++||+ ||+++..++.|..++.+... +...    .+.....+..|. .+...  ....|.+|+ +++||+ 
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~-~~~~~--~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDR-DPETG--KGLYRADVCALTFSGKY  268 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCB-CTTTS--SBSEEEEEEEECTTSSE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCc-ccccc--cccccccEEEECCCCCE
Confidence            4599999999996 89999877887776543110 1111    111110011110 00000  122588999 999997 


Q ss_pred             EEEEeCCCC-----EEEEEcC--CC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc---CCCeEEEEeCCCCeEEE
Q 011435          148 LYVADTLNL-----AIRKIGD--AG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR---PTCSLLVIDRGNAALRQ  216 (486)
Q Consensus       148 LYVAD~~n~-----rIrkid~--~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd---~~G~LYVaD~gn~rIr~  216 (486)
                      ||+++...+     +|..++.  +| +..+.....            ..-..|.++++..   +...||+++..++.|..
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP------------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE------------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee------------cCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence            899987655     7777753  45 433211000            0012366777544   35689999988899999


Q ss_pred             EECCCC
Q 011435          217 ISLNQD  222 (486)
Q Consensus       217 id~~G~  222 (486)
                      ++.++.
T Consensus       337 ~~~~~~  342 (365)
T 1jof_A          337 YRWKDE  342 (365)
T ss_dssp             EEEETT
T ss_pred             EEEchh
Confidence            988753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.77  E-value=0.00015  Score=76.21  Aligned_cols=109  Identities=13%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             cCC-eEEEEECCC----CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC----
Q 011435           84 EDG-ELFAVDEVN----SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT----  153 (486)
Q Consensus        84 ~dG-~LYVaD~~n----~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~----  153 (486)
                      +++ .|||++...    +.|.+||...... ..++-.|.                  .| ||++++||+ |||++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-v~~I~vG~------------------~P-gia~SpDgk~lyVan~~~~~  141 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-LGMTDGGF------------------LP-HPVAAEDGSFFAQASTVFER  141 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEE-EEEEEECS------------------SC-EEEECTTSSCEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEE-EEEEECCC------------------CC-ceEECCCCCEEEEEeccccc
Confidence            344 499999865    7999999875321 11122221                  59 999999998 999996    


Q ss_pred             -----CCCEEEEEcCCC---ceEEc-CCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 011435          154 -----LNLAIRKIGDAG---VTTIA-GGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQD  222 (486)
Q Consensus       154 -----~n~rIrkid~~G---v~tia-Gg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G~  222 (486)
                           ..+.|.+||...   +.+|. ++..          .......|.++++..+.+.|||++.. ++.|.+||....
T Consensus       142 ~~~G~~~~~VsviD~~t~~vv~~I~v~g~~----------r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          142 IARGKRTDYVEVFDPVTFLPIADIELPDAP----------RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCC----------CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             cccCCCCCEEEEEECCCCcEEEEEECCCcc----------ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence                 356899999876   34442 2100          00012468899854444489999975 789999998853

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.74  E-value=0.00014  Score=71.24  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ..+.+|++|+ .|+|||....+++|+.+|.+|..    .-..--..|..|      ....+.+|.|||+|++|+|||+..
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~----~~~~~L~~g~~~------l~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV----IGEMSLTKGSRG------LSHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE----EEEEECSTTGGG------CSSCCCSEEEEEECTTCCEEEEET
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE----EEEEEcCCccCC------cccccCCCCeeEECCCCCEEEEcC
Confidence            4789999997 68899999999999999998643    211111012222      133478999999999999999976


Q ss_pred             CCCEEEEEcCC
Q 011435          154 LNLAIRKIGDA  164 (486)
Q Consensus       154 ~n~rIrkid~~  164 (486)
                      . |.+++|.+.
T Consensus       243 ~-n~~y~f~~~  252 (255)
T 3qqz_A          243 P-NRFYRFTPQ  252 (255)
T ss_dssp             T-TEEEEEEC-
T ss_pred             C-ceEEEEEec
Confidence            5 599999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.74  E-value=0.00099  Score=66.53  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=78.5

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      .|.+++++++|+ ||++...++.|..++.++..   .......                ...|.+++++++|. ||+++.
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK---VQKSIPV----------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE---EEEEEEC----------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCCCc---EEEEecC----------------CCCCCeEEEcCCCCEEEEEec
Confidence            578999999995 99999999999999987432   1111111                12578999999998 899887


Q ss_pred             CC--------------CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEE
Q 011435          154 LN--------------LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALR  215 (486)
Q Consensus       154 ~n--------------~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr  215 (486)
                      .+              +.|+.+|...   +..+.+.                 ..|.++++ .++| .|+++...++.|+
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~-s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-----------------NQPTGLDV-SPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-----------------SSEEEEEE-CTTSCEEEEEETTTTEEE
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecCC-----------------CCCceEEE-cCCCCEEEEEECCCCeEE
Confidence            64              4899999755   3344321                 23678875 5555 6788888889999


Q ss_pred             EEECCC
Q 011435          216 QISLNQ  221 (486)
Q Consensus       216 ~id~~G  221 (486)
                      .++.++
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.73  E-value=0.00042  Score=71.91  Aligned_cols=132  Identities=13%  Similarity=0.028  Sum_probs=84.7

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCCccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQGYTG  123 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G  123 (486)
                      .+++...+.++.++..|..    |. |++++||. |||++.         ..+.|.+||..+... ..++.++.  |.. 
T Consensus        62 ~ViD~~t~~v~~~I~vG~~----P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~v~~--g~r-  132 (386)
T 3sjl_D           62 FVIDGEAGRVIGMIDGGFL----PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIELPD--APR-  132 (386)
T ss_dssp             EEEETTTTEEEEEEEECSS----CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETT--CCC-
T ss_pred             EEEECCCCeEEEEEECCCC----Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEECCC--ccc-
Confidence            4577778888888876654    85 99999998 999984         245799999875431 11122221  000 


Q ss_pred             cCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCce---e
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFD---V  195 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~g---I  195 (486)
                             ...-..|.++++++||. |||++.. .+.|.+||...   +.+|.-.     |+        ....|.+   +
T Consensus       133 -------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-----g~--------~~~~P~g~~~~  192 (386)
T 3sjl_D          133 -------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----DC--------YHIFPTAPDTF  192 (386)
T ss_dssp             -------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SE--------EEEEEEETTEE
T ss_pred             -------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-----Cc--------ceeecCCCcee
Confidence                   00123799999999998 9999974 78999999876   4555321     11        0112333   2


Q ss_pred             EEEcCCCeEEEEeCCC-CeE
Q 011435          196 VYVRPTCSLLVIDRGN-AAL  214 (486)
Q Consensus       196 a~vd~~G~LYVaD~gn-~rI  214 (486)
                      +.+..+|.+++.+... +++
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCC
T ss_pred             EEECCCCCEEEEECCCCCeE
Confidence            2356677777777764 565

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.72  E-value=0.00084  Score=64.37  Aligned_cols=130  Identities=9%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEe-cccCCccccCCCCccccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~  133 (486)
                      ++...+..+.++..+..  ..|.++++++||+ +|+++..++.|.+++..+..  ....+. +.   ..        ...
T Consensus        26 ~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~~~---~~--------~~~   90 (349)
T 1jmx_B           26 VDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSS---VP--------GEV   90 (349)
T ss_dssp             EETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCC---ST--------TEE
T ss_pred             EECCCCcEEEEEecCCC--CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEccc---cc--------ccc
Confidence            55566666665543321  1489999999997 89999889999999986432  111111 11   00        001


Q ss_pred             cCCcceEEEcCCCC-EEEEeCC-----------CCEEEEEcCCC---c---eEEcCCCCCCCCcCCCCccccccCCCcee
Q 011435          134 FNHPKGVTMDDKGN-LYVADTL-----------NLAIRKIGDAG---V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDV  195 (486)
Q Consensus       134 Ln~P~GIavD~dG~-LYVAD~~-----------n~rIrkid~~G---v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gI  195 (486)
                      -..|.+++++++|+ ||+++..           ++.|.++|...   .   ..+...                 ..+.++
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~  153 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-----------------RQVYLM  153 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-----------------SSCCCE
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-----------------Ccccce
Confidence            23589999999997 8888854           57899998654   1   111110                 135567


Q ss_pred             EEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          196 VYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       196 a~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      + .+++|.||+++   +.|.+++...
T Consensus       154 ~-~s~dg~l~~~~---~~i~~~d~~~  175 (349)
T 1jmx_B          154 R-AADDGSLYVAG---PDIYKMDVKT  175 (349)
T ss_dssp             E-ECTTSCEEEES---SSEEEECTTT
T ss_pred             e-ECCCCcEEEcc---CcEEEEeCCC
Confidence            6 56777788853   3488888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.71  E-value=0.00017  Score=74.81  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             ccCCe-EEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC--
Q 011435           83 SEDGE-LFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL--  154 (486)
Q Consensus        83 d~dG~-LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~--  154 (486)
                      .++|+ |||+|..    .++|.+||...... ..++-.|.                  .| +|++++||. |||+++.  
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-~~~I~vG~------------------~P-~va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-IGMIDGGF------------------LP-NPVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-EEEEEECS------------------SC-EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeE-EEEEECCC------------------CC-cEEECCCCCEEEEEccccc
Confidence            36665 9999986    67999999874321 11111221                  47 499999998 9999852  


Q ss_pred             -------CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 011435          155 -------NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQD  222 (486)
Q Consensus       155 -------n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G~  222 (486)
                             .+.|.+||...   +.+|.-+. +.        ....-..|.++++..+...|||++.. .+.|.+||....
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~-g~--------r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPD-AP--------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETT-CC--------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCC-cc--------ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence                   46799999877   34442110 00        00012368999854444479999975 789999998853

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.67  E-value=0.0018  Score=65.04  Aligned_cols=50  Identities=8%  Similarity=-0.036  Sum_probs=34.6

Q ss_pred             EEccCCcEEEEEecCcc---cCccceeEEEccCCe-EEEEECC-CCEEEEEcCCC
Q 011435           56 LQFENGYLVETVIEGNE---IGVVPYKIRVSEDGE-LFAVDEV-NSNIVKITPPL  105 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~---~~~~P~GlAVd~dG~-LYVaD~~-n~rI~kid~~g  105 (486)
                      ++...+..+.++..+..   .+..|.+|++++||+ ||+++.. .+.|.+||.+.
T Consensus        86 ~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A           86 WDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             EETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             EECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence            45555556655543221   135699999999997 9999875 67898888764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.62  E-value=0.00035  Score=67.03  Aligned_cols=117  Identities=10%  Similarity=-0.014  Sum_probs=78.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n  155 (486)
                      +.|+++.+++.+|++...++.|.++|..+..  ....+...               ....|.+++++++|+ +||++..+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~---------------~~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMP---------------DKFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECS---------------SCCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCCCc--EEEEEecC---------------CCCCCceeEECCCCCEEEEEeCCC
Confidence            4688888899999999999999999986432  11111110               011488999999997 89999889


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCC-----------CCeEEEEECC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRG-----------NAALRQISLN  220 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g-----------n~rIr~id~~  220 (486)
                      +.|+++|..+   +.++.....          ....-..|.++++ +++| .||+++..           ++.|..+++.
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~----------~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSV----------PGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCS----------TTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             CcEEEEeCCCCcEEEEEEcccc----------cccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence            9999999765   233321100          0001134778874 5555 78888855           5799999986


Q ss_pred             C
Q 011435          221 Q  221 (486)
Q Consensus       221 G  221 (486)
                      .
T Consensus       134 ~  134 (349)
T 1jmx_B          134 D  134 (349)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.61  E-value=0.0039  Score=62.14  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             cceeEEEccCCe-EEEEEC-------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           76 VPYKIRVSEDGE-LFAVDE-------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~-------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      .|.+++++++|+ ||++..       .++.|+.++..+..   .....+.                -..|.+++++++|+
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~----------------~~~~~~~~~~~~g~  315 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTIGP----------------PGNKRHIVSGNTEN  315 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEEEE----------------EECEEEEEECSSTT
T ss_pred             CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeeccC----------------CCCcceEEECCCCC
Confidence            489999999986 777764       35688899876431   1111111                11578999999996


Q ss_pred             -EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCC-----------
Q 011435          148 -LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGN-----------  211 (486)
Q Consensus       148 -LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn-----------  211 (486)
                       ||++...+++|+.+|.++   +..+...                 ..|.+++ ..++| .||++...+           
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------------~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIPVF-----------------DKPNTIA-LSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEE-ECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEecCC-----------------CCCCeEE-EcCCCCEEEEEecCCCcccccccccc
Confidence             999999999999999875   3333211                 2366787 45556 588888764           


Q ss_pred             ---CeEEEEECCC
Q 011435          212 ---AALRQISLNQ  221 (486)
Q Consensus       212 ---~rIr~id~~G  221 (486)
                         +.|+.++...
T Consensus       378 ~~dg~v~~~d~~~  390 (433)
T 3bws_A          378 LVLGKVYVIDTTT  390 (433)
T ss_dssp             SSCCEEEEEETTT
T ss_pred             ccceEEEEEECCC
Confidence               4899999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.60  E-value=0.00045  Score=69.48  Aligned_cols=93  Identities=13%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEE-ecccCCccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLV-AGSFQGYTG  123 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~v-aG~~~G~~G  123 (486)
                      +++...+..+.++..|.    .| +|++++||+ ||+++.         ..+.|.+||.....  ....+ .+.  +.  
T Consensus        35 v~D~~t~~~~~~i~~g~----~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--~~~~i~~~~--~~--  103 (361)
T 2oiz_A           35 VYDYTNGKFLGMVPTAF----NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--FEKEISLPP--KR--  103 (361)
T ss_dssp             EEETTTCCEEEEEECCE----EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--EEEEEEECT--TB--
T ss_pred             EEECCCCeEEEEecCCC----CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--EEEEEEcCc--cc--
Confidence            45666777777766553    48 999999997 999974         23569999976422  11111 221  00  


Q ss_pred             cCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC
Q 011435          124 HVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG  165 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G  165 (486)
                             ...-..|.+|+++++|+ |||++.. .+.|.+||.+.
T Consensus       104 -------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A          104 -------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             -------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             -------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence                   00124799999999998 9999875 68999999776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.52  E-value=0.00095  Score=72.83  Aligned_cols=153  Identities=11%  Similarity=0.063  Sum_probs=93.2

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCC--------------CEEEEEcCC--------CCc--c
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVN--------------SNIVKITPP--------LSQ--Y  108 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n--------------~rI~kid~~--------g~~--~  108 (486)
                      ++++.+...++.++.-|.    +|.++++++||. +|++....              ..|.+++..        |..  .
T Consensus       178 tvID~~t~~v~~qI~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEETTTTEEEEEEEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEECCCCeEEEEEEeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            456777777777776543    499999999988 88888765              335555431        110  0


Q ss_pred             cccEEEecccCCccccCCCCc---cccccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCce-EEcCCCCCCCCcCCCC
Q 011435          109 SRGRLVAGSFQGYTGHVDGKP---NEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGVT-TIAGGKSNVAGFRDGP  183 (486)
Q Consensus       109 ~~~~~vaG~~~G~~G~~dG~~---~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv~-tiaGg~~g~~G~~DG~  183 (486)
                      +.+.++-+.    ..  .+..   .-..=..|.||.+++||. +||++...++|.+||.+... .+.|...    ..+-.
T Consensus       254 ~~V~VID~~----~~--~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~----~~~~v  323 (595)
T 1fwx_A          254 NGVKVVDGR----KE--ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD----PRSAV  323 (595)
T ss_dssp             TTEEEEECS----GG--GCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC----GGGGE
T ss_pred             CcEEEEeCc----cc--CCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC----cccce
Confidence            111111111    00  0111   000115899999999998 99999999999999977521 1111100    00000


Q ss_pred             -ccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          184 -SEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       184 -~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                       ..-..=..|.+++ .+++|++|++..-++.|.+++.+.
T Consensus       324 ~~~v~vG~gP~h~a-F~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          324 VAEPELGLGPLHTA-FDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECCBCCSCEEEEE-ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEcCCCCCcceEE-ECCCCeEEEEEecCCcEEEEEhhH
Confidence             0000003589998 578889999999999999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.51  E-value=0.002  Score=68.87  Aligned_cols=123  Identities=9%  Similarity=0.032  Sum_probs=82.5

Q ss_pred             ccceeEEEcc----CCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435           75 VVPYKIRVSE----DGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L  148 (486)
Q Consensus        75 ~~P~GlAVd~----dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L  148 (486)
                      ..|.+|++++    ||+ ||+++...+.|..+|..+..  ...++...  +...  ++... -.-..+.+|+++++|. +
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~--g~~~--~~~~~-~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTR--GMTV--DTQTY-HPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECC--EECS--SSCCE-ESCCCEEEEEECSSSSEE
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc--cceeeccc--Cccc--Ccccc-ccCCceEEEEECCCCCEE
Confidence            4599999999    987 89998878899999876432  12222221  0000  10000 0012577999999765 8


Q ss_pred             EEEeCCCCEEEEEcCCC---c--eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCCC
Q 011435          149 YVADTLNLAIRKIGDAG---V--TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       149 YVAD~~n~rIrkid~~G---v--~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G~  222 (486)
                      ||+....+.|+.+|...   +  .++..+                 ..|.+++ .+++|+ ||++....+.|.++|....
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~-----------------~~~~~~~-~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAA-----------------PFLHDGG-WDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECC-----------------SSCCCEE-ECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccC-----------------cCccCce-ECCCCCEEEEEecCCCeEEEEECCCC
Confidence            99999999999998654   2  233211                 2477887 567775 8999998999999998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.48  E-value=0.00066  Score=69.71  Aligned_cols=107  Identities=10%  Similarity=-0.047  Sum_probs=71.6

Q ss_pred             CeEEEEECCCC----EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC-------
Q 011435           86 GELFAVDEVNS----NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT-------  153 (486)
Q Consensus        86 G~LYVaD~~n~----rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~-------  153 (486)
                      ..+||++...+    +|.+||.++... ..++-.|.                  .| ||++++||. |||++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v-~~~i~vG~------------------~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVT-LGHSLGAF------------------LS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEE-EEEEEECT------------------TC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCeE-EEEEeCCC------------------CC-ceEECCCCCEEEEEccccccccc
Confidence            57999999887    899999875321 11122221                  58 999999997 999984       


Q ss_pred             --CCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEE--EECCC
Q 011435          154 --LNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQ--ISLNQ  221 (486)
Q Consensus       154 --~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~--id~~G  221 (486)
                        ..+.|.+||...   +.+|..+...  .+       .....|.++++..+...|||++.. ++.|.+  ||+..
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~--~~-------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAP--RF-------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSC--SC-------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcc--cc-------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence              368899999876   4555321000  00       012468999854444489999976 677888  77753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.37  E-value=0.0019  Score=68.32  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCe--EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGE--LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP  137 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~--LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P  137 (486)
                      .|+.++++++|   +..|.+|++++||.  |||++. .++|++++.++...  ...+++...-   ...|. .......+
T Consensus         2 ~gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~---~~~g~-~~~~e~Gl   71 (463)
T 2wg3_C            2 NCFCIQEVVSG---LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKL---VQSGI-KGGDERGL   71 (463)
T ss_dssp             CCEEEEEEEEE---ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTT---BCCCC-SSSCCCSE
T ss_pred             CceEEEEeccC---CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCcce---eccCc-cccCCCcc
Confidence            46778888876   45799999999996  999997 57999998765321  1111221000   00000 00112356


Q ss_pred             ceEEEcCC----CCEEEEeCCC------------CEEEEEcCCC----------ceEEcCCCCCCCCcCCCCccccccCC
Q 011435          138 KGVTMDDK----GNLYVADTLN------------LAIRKIGDAG----------VTTIAGGKSNVAGFRDGPSEDAKFSN  191 (486)
Q Consensus       138 ~GIavD~d----G~LYVAD~~n------------~rIrkid~~G----------v~tiaGg~~g~~G~~DG~~~~a~f~~  191 (486)
                      .|||++++    |.|||+-+..            ++|.++....          ...|......           ..--.
T Consensus        72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-----------~~~H~  140 (463)
T 2wg3_C           72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-----------HRKHL  140 (463)
T ss_dssp             EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-----------SSSSC
T ss_pred             eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-----------CCccc
Confidence            79999985    7899986421            4777775321          1222211000           00011


Q ss_pred             CceeEEEcCCCeEEEEe--CC---------------CCeEEEEECCCC
Q 011435          192 DFDVVYVRPTCSLLVID--RG---------------NAALRQISLNQD  222 (486)
Q Consensus       192 P~gIa~vd~~G~LYVaD--~g---------------n~rIr~id~~G~  222 (486)
                      -..|+ .+++|.|||+-  .+               .+.|.||+++|.
T Consensus       141 g~~l~-fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          141 GGQLL-FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             EEEEE-ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             CCcEe-ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCC
Confidence            23466 68999999983  33               357999999984

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.35  E-value=0.0023  Score=67.74  Aligned_cols=159  Identities=11%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEE--ccCCe-EEEEEC-----CCCEEEEEcCCCCcccccEEEecccCCccccC
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRV--SEDGE-LFAVDE-----VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHV  125 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAV--d~dG~-LYVaD~-----~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~  125 (486)
                      .++++..+.++.++.-|.. +..|..|.+  +++|. +||+..     ..+.|.++..+.+.+....+ +.....   ..
T Consensus       231 ~v~D~~~~k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v-Idi~~~---~v  305 (462)
T 2ece_A          231 HFWDLRKRKRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV-IEIPAE---PL  305 (462)
T ss_dssp             EEEETTTTEEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE-EEECCE---EC
T ss_pred             EEEECCCCcEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE-EeCCCc---cc
Confidence            3467777777777665522 345888877  89987 899887     77788776654322111111 111000   00


Q ss_pred             CCCcc------ccccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCC--C----ceEEcCCCCC-CCCcCCCCccccccCC
Q 011435          126 DGKPN------EARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDA--G----VTTIAGGKSN-VAGFRDGPSEDAKFSN  191 (486)
Q Consensus       126 dG~~~------~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~--G----v~tiaGg~~g-~~G~~DG~~~~a~f~~  191 (486)
                      .+...      .+.-+.|.+|.+++||+ |||++++.+.|.+||..  +    +..+.-++.. ..-+.+|.   .--..
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~---~~~gg  382 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH---KLTGA  382 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC---CCCSC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc---cCCCC
Confidence            01000      00024699999999998 99999999999999853  2    2222211000 00000000   01235


Q ss_pred             CceeEEEcCCCeEEEEeC-------------CCCeEEEEECC
Q 011435          192 DFDVVYVRPTCSLLVIDR-------------GNAALRQISLN  220 (486)
Q Consensus       192 P~gIa~vd~~G~LYVaD~-------------gn~rIr~id~~  220 (486)
                      |.++++..+...|||+++             .+..+.+++.+
T Consensus       383 Pr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd  424 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNAN  424 (462)
T ss_dssp             CCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEec
Confidence            999985444448999992             45667766555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.33  E-value=0.0023  Score=65.16  Aligned_cols=108  Identities=12%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             cCCe-EEEEEC-CCC---EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC---
Q 011435           84 EDGE-LFAVDE-VNS---NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL---  154 (486)
Q Consensus        84 ~dG~-LYVaD~-~n~---rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~---  154 (486)
                      ++|. +||+|. ..+   .|.+||.+...     ++ +...  .|           ..| +|++++||+ |||++..   
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~-----~~-~~i~--~g-----------~~p-~i~~spDg~~lyv~n~~~~~   89 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGS-----IL-GHVN--GG-----------FLP-NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCe-----EE-EEec--CC-----------CCC-CeEECCCCCEEEEEeccccc
Confidence            4555 999997 444   88999986422     21 2211  11           158 999999998 9999852   


Q ss_pred             ------CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCC
Q 011435          155 ------NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQ  221 (486)
Q Consensus       155 ------n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G  221 (486)
                            .+.|.+||...   +.++.-+...         ....-..|.++++..+...|||++.. ++.|.+|| ..
T Consensus        90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~---------~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPVTFLPIADIELPDAP---------RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             cccCCCCCeEEEEECCCCcEEEEEECCCcc---------ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence                  46789999865   2333211000         00001358889854445579999975 68999999 64

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.30  E-value=0.00012  Score=79.98  Aligned_cols=140  Identities=15%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             CcEEEccC--CcE-EEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcc-------cccEEEecccCCc
Q 011435           53 GNVLQFEN--GYL-VETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQY-------SRGRLVAGSFQGY  121 (486)
Q Consensus        53 gsvv~~~~--G~~-vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~-------~~~~~vaG~~~G~  121 (486)
                      .+|++...  +.. +.++..|.    +|+|+.+++||. +||++...+.|.+|+.+....       -...+++ ..  .
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v--~  328 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIAN----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EP--E  328 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEES----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CC--B
T ss_pred             EEEEeCcccCCceeEEEEecCC----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-Ec--C
Confidence            34566655  444 44554443    599999999998 999999999999999762100       0000111 11  0


Q ss_pred             cccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-------------ceEEcCCCCCCCCcCCCCccccc
Q 011435          122 TGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-------------VTTIAGGKSNVAGFRDGPSEDAK  188 (486)
Q Consensus       122 ~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G-------------v~tiaGg~~g~~G~~DG~~~~a~  188 (486)
                      -|           ..|.++++|++|++|++....+.|.++|.+.             +.++..+      |..     ..
T Consensus       329 vG-----------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~------yqp-----Gh  386 (595)
T 1fwx_A          329 LG-----------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH------YQP-----GH  386 (595)
T ss_dssp             CC-----------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS------SCE-----EE
T ss_pred             CC-----------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc------ccc-----cc
Confidence            11           2699999999999999999999999998543             2222221      111     11


Q ss_pred             cCCCceeEEEcCCC-eEEEEeCCC-CeE-----------EEEECCCC
Q 011435          189 FSNDFDVVYVRPTC-SLLVIDRGN-AAL-----------RQISLNQD  222 (486)
Q Consensus       189 f~~P~gIa~vd~~G-~LYVaD~gn-~rI-----------r~id~~G~  222 (486)
                      .....+++ ..++| .||+++... .|+           +.|+..|+
T Consensus       387 ~~~~~g~t-~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          387 LKTVMGET-LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             EEETTTTS-TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ceeccceE-eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence            22334555 34555 899999987 777           77887653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.19  E-value=0.0074  Score=61.90  Aligned_cols=117  Identities=20%  Similarity=0.278  Sum_probs=72.9

Q ss_pred             ccceeEEE--cc-CCe--EEEEECCCCEEEEEcC--CCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CC
Q 011435           75 VVPYKIRV--SE-DGE--LFAVDEVNSNIVKITP--PLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KG  146 (486)
Q Consensus        75 ~~P~GlAV--d~-dG~--LYVaD~~n~rI~kid~--~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG  146 (486)
                      ..|+||++  ++ .|.  +||++.. +++..+..  .+... ....++.++.      .|       ..|.|+++|+ .|
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~-~~~~lVR~f~------lg-------sq~EgcvvDd~~g  192 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGY-ISGKKVRAFK------MN-------SQTEGMAADDEYG  192 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSC-EEEEEEEEEE------CS-------SCEEEEEEETTTT
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCc-ccceEEEEec------CC-------CCcceEEEcCCCC
Confidence            67999999  76 454  7777765 67766443  11100 0111222110      00       1699999997 67


Q ss_pred             CEEEEeCCCCEEEEEcCC--C---ceEE--cCCCCCCCCcCCCCccccccC-CCceeEEE-cCC--CeEEEEeCCCCeEE
Q 011435          147 NLYVADTLNLAIRKIGDA--G---VTTI--AGGKSNVAGFRDGPSEDAKFS-NDFDVVYV-RPT--CSLLVIDRGNAALR  215 (486)
Q Consensus       147 ~LYVAD~~n~rIrkid~~--G---v~ti--aGg~~g~~G~~DG~~~~a~f~-~P~gIa~v-d~~--G~LYVaD~gn~rIr  215 (486)
                      .|||++... .|++|+.+  +   -+.+  .+.              ..|. .+.||++. ..+  |.|++++.+++...
T Consensus       193 ~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~--------------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          193 RLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADG--------------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             EEEEEETTT-EEEEEECSTTSCSCCEEEEEBSS--------------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             eEEEecccc-eEEEEeCCcCCCCCceEEEEecC--------------CccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence            799999974 59999944  3   1122  221              1122 47788864 332  57999999999999


Q ss_pred             EEECCC
Q 011435          216 QISLNQ  221 (486)
Q Consensus       216 ~id~~G  221 (486)
                      +|+..+
T Consensus       258 Vydr~~  263 (355)
T 3amr_A          258 IYDRQG  263 (355)
T ss_dssp             EEESST
T ss_pred             EEECCC
Confidence            999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.0091  Score=63.25  Aligned_cols=148  Identities=13%  Similarity=-0.051  Sum_probs=84.5

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC------------------CCCEEEEEcCCCCcccccEEEec
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE------------------VNSNIVKITPPLSQYSRGRLVAG  116 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~------------------~n~rI~kid~~g~~~~~~~~vaG  116 (486)
                      ++...+.++.++..+......++++.+.++++ +|++++                  ..++|..++.+.... ..++-+|
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg  247 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLG  247 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESC
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecC
Confidence            33344566665553322223467788899988 566653                  378999999874310 0111122


Q ss_pred             ccCCccccCCCCccccccCCcceEEE--cCCCC-EEEEeC-----CCCEEEEEcCC-C----ceEEcCCCCC-CCCcCC-
Q 011435          117 SFQGYTGHVDGKPNEARFNHPKGVTM--DDKGN-LYVADT-----LNLAIRKIGDA-G----VTTIAGGKSN-VAGFRD-  181 (486)
Q Consensus       117 ~~~G~~G~~dG~~~~a~Ln~P~GIav--D~dG~-LYVAD~-----~n~rIrkid~~-G----v~tiaGg~~g-~~G~~D-  181 (486)
                      .    .|           ..|.+|.+  +++|. +||+..     .++.|.++..+ |    +.+|- .... ..+-.. 
T Consensus       248 ~----~g-----------~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~lp~  311 (462)
T 2ece_A          248 E----EN-----------RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNLPE  311 (462)
T ss_dssp             T----TE-----------EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSCCG
T ss_pred             C----CC-----------CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCccccccccc
Confidence            1    11           15888877  99998 899987     77788765432 3    12211 0000 000000 


Q ss_pred             CCc-cccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          182 GPS-EDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       182 G~~-~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .+. ..+.-..|.+|.+..++..|||++++.+.|.+|+..
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            000 000024689998655555899999999999999985

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.09  E-value=0.0056  Score=59.27  Aligned_cols=108  Identities=23%  Similarity=0.351  Sum_probs=69.1

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCc---ccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQ---YSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~---~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      .-..||++|||.||.+  .++.++++++....   +....+.+|+    .|.       ..|   ..|.+|++|+||++ 
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~----~Gw-------~~F---~a~~fD~~G~LYav-  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN----GGW-------NQF---QFLFFDPNGYLYAV-  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC----SCG-------GGC---SEEEECTTSCEEEE-
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc----ccc-------ccc---eEEEECCCCCEEEe-
Confidence            4579999999999999  56789999985321   0011233442    121       112   38999999999999 


Q ss_pred             CCCCEEEEEcC--CC----c--eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435          153 TLNLAIRKIGD--AG----V--TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       153 ~~n~rIrkid~--~G----v--~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id  218 (486)
                       .++.|+|+++  ++    +  .+..|.    .||.+       |   ..| +.+++|.||.++  ++++.+-.
T Consensus       105 -~dG~iyr~~pP~~~~~~Wl~~a~~vg~----~gw~~-------~---~~l-ff~p~G~Lyav~--dg~lyr~~  160 (236)
T 1tl2_A          105 -SKDKLYKASPPQSDTDNWIARATEVGS----GGWSG-------F---KFL-FFHPNGYLYAVH--GQQFYKAL  160 (236)
T ss_dssp             -ETTEEEEESCCCSTTCCHHHHSEEEEC----SSGGG-------E---EEE-EECTTSCEEEEE--TTEEEEEC
T ss_pred             -CCCEEEEeCCCcCCCCceeccccEecc----CCCCc-------e---EEE-EECCCceEEEEe--CCcEEecC
Confidence             3499999987  44    1  122221    12222       1   234 589999999999  55565543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.07  E-value=0.0033  Score=68.02  Aligned_cols=103  Identities=12%  Similarity=-0.018  Sum_probs=73.4

Q ss_pred             EccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEE
Q 011435           82 VSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRK  160 (486)
Q Consensus        82 Vd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrk  160 (486)
                      .|+++.+||+....+.|.+||.++..   +...+..     |           ..|.++++++||+ |||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-----g-----------~~p~~v~~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-----G-----------YAVHISRLSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCC---EEEEEEC-----S-----------SCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCe---EEEEEeC-----C-----------CCccceEECCCCCEEEEEcC-CCeEEE
Confidence            44556799999999999999987532   1111110     1           1588999999998 899985 579999


Q ss_pred             EcCC--C---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc---CCC-eEEEEeCCCCeEEEEECCC
Q 011435          161 IGDA--G---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR---PTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       161 id~~--G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd---~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      ||..  .   +.++..+                 ..|.++++..   ++| .|||++...+.|..||...
T Consensus       223 iD~~~~t~~~v~~i~~G-----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIG-----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EETTSSSCCEEEEEECC-----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             EECCCCCCcEeEEEecC-----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            9984  2   3444322                 1378898542   345 8999999999999998654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.01  E-value=0.016  Score=54.93  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             CcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeC-
Q 011435          136 HPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR-  209 (486)
Q Consensus       136 ~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~-  209 (486)
                      .|.+++++++|+ |||++..++.|+++|...   +.++.....+           ..-..|.+++ ++++| .||+++. 
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~s~dg~~l~~~~~~  102 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-----------ERVKSLFGAA-LSPDGKTLAIYESP  102 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-----------EEEECTTCEE-ECTTSSEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc-----------cccccccceE-ECCCCCEEEEEecc
Confidence            488999999996 899999889999999755   3334321000           0012477887 46666 7999863 


Q ss_pred             ----------CCCeEEEEECCCC
Q 011435          210 ----------GNAALRQISLNQD  222 (486)
Q Consensus       210 ----------gn~rIr~id~~G~  222 (486)
                                .++.|++++....
T Consensus       103 ~~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTT
T ss_pred             cccccccccccCceEEEEECCCC
Confidence                      3588999998753

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.97  E-value=0.0052  Score=67.08  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             ccCccceeEEEcc-CCeEEEEECCC---------------------CEEEEEcCCCCcc------cccEEEecccCCccc
Q 011435           72 EIGVVPYKIRVSE-DGELFAVDEVN---------------------SNIVKITPPLSQY------SRGRLVAGSFQGYTG  123 (486)
Q Consensus        72 ~~~~~P~GlAVd~-dG~LYVaD~~n---------------------~rI~kid~~g~~~------~~~~~vaG~~~G~~G  123 (486)
                      ..+..|+|+++++ +|.|||+-+.+                     +.|+++.+++...      ....+++|......+
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            3347899999996 89999997643                     5799997653211      112234443211110


Q ss_pred             ----cCCCCccccccCCcceEEEcCCCCEEEEeCC------------CCEEEEEcCC-C-ceEEcCCCCCCCCcCCCCcc
Q 011435          124 ----HVDGKPNEARFNHPKGVTMDDKGNLYVADTL------------NLAIRKIGDA-G-VTTIAGGKSNVAGFRDGPSE  185 (486)
Q Consensus       124 ----~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~------------n~rIrkid~~-G-v~tiaGg~~g~~G~~DG~~~  185 (486)
                          ..........|+.|.+|++|+.|+|||+.-+            |+.++.+++. | +..|+-+..+          
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----------  530 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----------  530 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----------
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----------
Confidence                0011113456999999999999999998643            5678888765 3 7777653211          


Q ss_pred             ccccCCCceeEEEcCCCeEEEE
Q 011435          186 DAKFSNDFDVVYVRPTCSLLVI  207 (486)
Q Consensus       186 ~a~f~~P~gIa~vd~~G~LYVa  207 (486)
                          ....|+++.++...|||.
T Consensus       531 ----aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          531 ----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             ----CEEEEEEECTTSSEEEEE
T ss_pred             ----ccCcCeeECCCCCEEEEE
Confidence                123577765544567765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.89  E-value=0.036  Score=56.84  Aligned_cols=128  Identities=15%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccC----C----eEEEEECC--CCEEEEE--cCCCCcccccEEEecccCCccc
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSED----G----ELFAVDEV--NSNIVKI--TPPLSQYSRGRLVAGSFQGYTG  123 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~d----G----~LYVaD~~--n~rI~ki--d~~g~~~~~~~~vaG~~~G~~G  123 (486)
                      +++ +|..+..+..|     .+++|.+-++    |    -+|++|..  +++|..|  +++..   .... ++...    
T Consensus        55 ydl-~G~~l~~~~~g-----~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~l~~-i~~~~----  120 (355)
T 3amr_A           55 YSL-DGKMLHSYNTG-----KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQS-MTDPD----  120 (355)
T ss_dssp             EET-TSCEEEEECCS-----CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---CEEE-CSCTT----
T ss_pred             EcC-CCcEEEEccCC-----CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---ceee-ccccc----
Confidence            444 67777766543     2566666542    2    25899988  8988777  54422   1222 22100    


Q ss_pred             cCCCCccccccCCcceEEE--cCC-CC--EEEEeCCCCEEEEEc----CCC------ceEEcCCCCCCCCcCCCCccccc
Q 011435          124 HVDGKPNEARFNHPKGVTM--DDK-GN--LYVADTLNLAIRKIG----DAG------VTTIAGGKSNVAGFRDGPSEDAK  188 (486)
Q Consensus       124 ~~dG~~~~a~Ln~P~GIav--D~d-G~--LYVAD~~n~rIrkid----~~G------v~tiaGg~~g~~G~~DG~~~~a~  188 (486)
                          ......+..|.|||+  ++. |.  +||.+.. +++..+.    .+|      +.++..+                
T Consensus       121 ----~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg----------------  179 (355)
T 3amr_A          121 ----HPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN----------------  179 (355)
T ss_dssp             ----SCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS----------------
T ss_pred             ----cCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC----------------
Confidence                000123578999999  874 54  7888875 7776643    233      2333221                


Q ss_pred             cCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          189 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       189 f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                       ..|.++++.+..|.|||++...+ ||+|+.+
T Consensus       180 -sq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~  209 (355)
T 3amr_A          180 -SQTEGMAADDEYGRLYIAEEDEA-IWKFSAE  209 (355)
T ss_dssp             -SCEEEEEEETTTTEEEEEETTTE-EEEEECS
T ss_pred             -CCcceEEEcCCCCeEEEecccce-EEEEeCC
Confidence             24678887778899999999855 9999966

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.89  E-value=0.011  Score=56.64  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      ....+++|++|+|||+.. ++.|.+++.+|  +..+....                ..+..++ ++.+|+|||+.. ++.
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~----------------~~~~~~~-~~~~g~l~v~t~-~gg  276 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK----------------RIESSPV-IGNTDTIYFGSY-DGH  276 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECSS----------------CCCSCCE-ECTTSCEEEECT-TCE
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC----------------Cccccce-EcCCCeEEEecC-CCC
Confidence            467889999999999975 56888998877  33332110                0122344 677899999875 457


Q ss_pred             EEEEECCCC
Q 011435          214 LRQISLNQD  222 (486)
Q Consensus       214 Ir~id~~G~  222 (486)
                      |.+++.+|.
T Consensus       277 l~~~d~~g~  285 (330)
T 3hxj_A          277 LYAINPDGT  285 (330)
T ss_dssp             EEEECTTSC
T ss_pred             EEEECCCCc
Confidence            888987664

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.78  E-value=0.0062  Score=60.63  Aligned_cols=105  Identities=11%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             EEEccCC-eEEEEE---CCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC-CEEEEeCC
Q 011435           80 IRVSEDG-ELFAVD---EVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLYVADTL  154 (486)
Q Consensus        80 lAVd~dG-~LYVaD---~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD~~  154 (486)
                      .++..+| .||++|   ..+..|++++.+|+.   .+.+....               .     ++++.+| .||++|.+
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~---------------~-----~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHY---------------L-----FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSC---------------C-----CCSEEETTEEEEECTT
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCC---------------c-----eEeeEECCEEEEEeCC
Confidence            3455544 599999   678899999999753   33343310               0     2234444 49999888


Q ss_pred             CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECCCCceee
Q 011435          155 NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLNQDDCEY  226 (486)
Q Consensus       155 n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~G~~~~~  226 (486)
                      ..+|.+++.+|  ..++..+                   +..+++++..+.||.++..+ .+|.+++++|.....
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~-------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~  221 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDC-------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV  221 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECS-------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE
T ss_pred             CceEEEEECCCCCEEEEeCC-------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE
Confidence            88999999887  3444321                   11122234567788888653 578888888754433

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.70  E-value=0.016  Score=63.04  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             ccccCCcceEEEcC-CCCEEEEeCCC---------------------CEEEEEcCCC-----------ceEEcCCCCCCC
Q 011435          131 EARFNHPKGVTMDD-KGNLYVADTLN---------------------LAIRKIGDAG-----------VTTIAGGKSNVA  177 (486)
Q Consensus       131 ~a~Ln~P~GIavD~-dG~LYVAD~~n---------------------~rIrkid~~G-----------v~tiaGg~~g~~  177 (486)
                      ...|.+|.+|++++ +|.||||=++|                     ++|+++..++           +..++|......
T Consensus       380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~  459 (592)
T 4a9v_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence            45688999999998 88999997653                     6788886432           122333211111


Q ss_pred             -C-cC--CCCccccccCCCceeEEEcCCCeEEE-EeCC-----------CCeEEEEECC
Q 011435          178 -G-FR--DGPSEDAKFSNDFDVVYVRPTCSLLV-IDRG-----------NAALRQISLN  220 (486)
Q Consensus       178 -G-~~--DG~~~~a~f~~P~gIa~vd~~G~LYV-aD~g-----------n~rIr~id~~  220 (486)
                       + |.  .+......|+.|++|+ ++++|+||| +|..           ++.|.+++++
T Consensus       460 ~~~~~g~~~~~~~~~fnsPDnL~-fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~  517 (592)
T 4a9v_A          460 GTPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA  517 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT
T ss_pred             cccccCccCccccCccCCCCceE-ECCCCCEEEEeCCCcCccccccccCCceEEEEeCC
Confidence             0 11  1122345799999998 799999999 7863           5578888874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.64  E-value=0.03  Score=55.63  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             EEcCCCC-EEEE-eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEE
Q 011435          141 TMDDKGN-LYVA-DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ  216 (486)
Q Consensus       141 avD~dG~-LYVA-D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~  216 (486)
                      .++++|. ||.+ |...+.|.+++.+|  ..++..+                  ....+.+  .++.||++|..++.|.+
T Consensus       229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~------------------~~~~i~i--~~d~Iy~td~~~~~i~~  288 (302)
T 3s25_A          229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG------------------EFCNINV--TSQYVYFTDFVSNKEYC  288 (302)
T ss_dssp             EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES------------------CEEEEEE--CSSEEEEEETTTCCEEE
T ss_pred             eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC------------------ccceEEE--eCCEEEEEECCCCeEEE
Confidence            3566555 7776 55567888888888  3444321                  0124542  56789999998888999


Q ss_pred             EECCCC
Q 011435          217 ISLNQD  222 (486)
Q Consensus       217 id~~G~  222 (486)
                      +.++|.
T Consensus       289 ~~~dGs  294 (302)
T 3s25_A          289 TSTQNP  294 (302)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            999885

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.60  E-value=0.046  Score=57.73  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=67.3

Q ss_pred             cceeEEEccC----CeEEEEECCC------------CEEEEEcCCCC---c--ccccEEEecccCCccccCCCCcccccc
Q 011435           76 VPYKIRVSED----GELFAVDEVN------------SNIVKITPPLS---Q--YSRGRLVAGSFQGYTGHVDGKPNEARF  134 (486)
Q Consensus        76 ~P~GlAVd~d----G~LYVaD~~n------------~rI~kid~~g~---~--~~~~~~vaG~~~G~~G~~dG~~~~a~L  134 (486)
                      .+.|||++++    |.|||+-+..            ++|.|+..+..   .  ....+++.......           .-
T Consensus        70 Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~-----------~~  138 (463)
T 2wg3_C           70 GLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH-----------RK  138 (463)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS-----------SS
T ss_pred             cceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC-----------Cc
Confidence            3678999985    8899985421            47888876421   1  11233443321111           11


Q ss_pred             CCcceEEEcCCCCEEEE--eCC---------------CCEEEEEcCCCce-----EEcCCCCCCCCcCCCC-----cccc
Q 011435          135 NHPKGVTMDDKGNLYVA--DTL---------------NLAIRKIGDAGVT-----TIAGGKSNVAGFRDGP-----SEDA  187 (486)
Q Consensus       135 n~P~GIavD~dG~LYVA--D~~---------------n~rIrkid~~Gv~-----tiaGg~~g~~G~~DG~-----~~~a  187 (486)
                      ..-..|++++||.|||+  |..               .+.|.||+++|-.     .|.....    |.+..     .-..
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNP----f~~~~~~~~eI~a~  214 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNP----HFNSTNQPPEVFAH  214 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTST----TTTCSSSCTTEEEE
T ss_pred             ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCC----CcCCCCCcccEEEE
Confidence            23468999999999999  332               3579999988721     2211100    11110     0111


Q ss_pred             ccCCCceeEEEcCC----C--eEEEEeC
Q 011435          188 KFSNDFDVVYVRPT----C--SLLVIDR  209 (486)
Q Consensus       188 ~f~~P~gIa~vd~~----G--~LYVaD~  209 (486)
                      -+.+|.++++...+    |  .||++|.
T Consensus       215 G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          215 GLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             CCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCCCcceEEECCCCCCcccceEEEeccc
Confidence            36689999954433    4  6788886

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.47  E-value=0.31  Score=50.30  Aligned_cols=147  Identities=9%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             EEccCC--cEEEEEecCccc---CccceeEEEc-c-------CCeEEEEECCCCEEEEEcCCCCcccccEEEecc-cCC-
Q 011435           56 LQFENG--YLVETVIEGNEI---GVVPYKIRVS-E-------DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGS-FQG-  120 (486)
Q Consensus        56 v~~~~G--~~vetv~~G~~~---~~~P~GlAVd-~-------dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~-~~G-  120 (486)
                      +++..+  .++.++.=....   ...-.+|+|| .       ++.+||+|.....|+++|.....   ...+... ..- 
T Consensus       128 ~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~---swRv~~~~~~pd  204 (381)
T 3q6k_A          128 YDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD---SWNVTHPTFKAE  204 (381)
T ss_dssp             EESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE---EEEEECGGGSCC
T ss_pred             EECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc---EEEEccCCCccc
Confidence            677777  777666432111   2345789999 2       45699999999999999987543   2222221 100 


Q ss_pred             ccc--cCCCCccccccCCcceEEEcCC----CC-EEEEeCCCCEEEEEcCC----C-----ceEEcCCCCCCCCcCCCCc
Q 011435          121 YTG--HVDGKPNEARFNHPKGVTMDDK----GN-LYVADTLNLAIRKIGDA----G-----VTTIAGGKSNVAGFRDGPS  184 (486)
Q Consensus       121 ~~G--~~dG~~~~a~Ln~P~GIavD~d----G~-LYVAD~~n~rIrkid~~----G-----v~tiaGg~~g~~G~~DG~~  184 (486)
                      ..+  ..+|..- .....-.|||++++    +. ||+.-....++.++...    .     +..+ |..    |    + 
T Consensus       205 ~~~~~~i~G~~~-~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~k----g----~-  273 (381)
T 3q6k_A          205 RPTKFDYGGKEY-EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNR----G----K-  273 (381)
T ss_dssp             SCEEEEETTEEE-EECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EEC----C----T-
T ss_pred             cCcceEECCEEe-EeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eec----C----C-
Confidence            000  0011100 01135679999986    44 99999988899998621    1     3332 210    0    0 


Q ss_pred             cccccCCCceeEEEc-CCCeEEEEeCCCCeEEEEECCC
Q 011435          185 EDAKFSNDFDVVYVR-PTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       185 ~~a~f~~P~gIa~vd-~~G~LYVaD~gn~rIr~id~~G  221 (486)
                          .+...+++ .| .+|+||+++..++.|.+++.++
T Consensus       274 ----~s~~~~~~-~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          274 ----YNDAIALA-YDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             ----TCCEEEEE-ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             ----CCCcceEE-EeCCCCeEEEEeccCCeEEEEeCCC
Confidence                01112344 54 8999999999999999999986

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.32  E-value=0.035  Score=57.45  Aligned_cols=106  Identities=10%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             cceeEEEccC----C-eEEEEECCCCEEEEEcCC----CCcccccEEEecccCCccccCCCCccccccCCcceEEEc-CC
Q 011435           76 VPYKIRVSED----G-ELFAVDEVNSNIVKITPP----LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD-DK  145 (486)
Q Consensus        76 ~P~GlAVd~d----G-~LYVaD~~n~rI~kid~~----g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD-~d  145 (486)
                      .-.|||++++    + .||+.-....++++|...    ......++ ..|.    .|         ......++++| .+
T Consensus       221 Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~-~~G~----kg---------~~s~~~~~~~D~~~  286 (381)
T 3q6k_A          221 GIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPE-LLGN----RG---------KYNDAIALAYDPKT  286 (381)
T ss_dssp             CEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCE-EEEE----CC---------TTCCEEEEEECTTT
T ss_pred             CceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceE-Eeee----cC---------CCCCcceEEEeCCC
Confidence            3578999876    4 499998888899999632    11111122 2222    01         01133478897 79


Q ss_pred             CCEEEEeCCCCEEEEEcCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC
Q 011435          146 GNLYVADTLNLAIRKIGDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG  210 (486)
Q Consensus       146 G~LYVAD~~n~rIrkid~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  210 (486)
                      |+||+++...++|.+.++++       +.+++-              +.+|..|.++. ++.+|.|||....
T Consensus       287 G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~--------------d~~l~~pd~~~-i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          287 KVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT--------------SSRFVFGTDIS-VDSKGGLWFMSNG  343 (381)
T ss_dssp             CEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE--------------CTTCCSEEEEE-ECTTSCEEEEECS
T ss_pred             CeEEEEeccCCeEEEEeCCCCccccCceEEEEE--------------CCCccccCeEE-ECCCCeEEEEECc
Confidence            99999999999999999875       244443              23688999997 7889999998844

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.23  E-value=0.039  Score=52.60  Aligned_cols=104  Identities=14%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      ..++++++|.|||+.. ++.|++++.++..   .......                -.....+++|.+|+|||+.   +.
T Consensus       140 ~~~~~~~~g~l~vgt~-~~~l~~~d~~g~~---~~~~~~~----------------~~~~~~~~~d~~g~l~v~t---~~  196 (330)
T 3hxj_A          140 ATPIVSEDGTIYVGSN-DNYLYAINPDGTE---KWRFKTN----------------DAITSAASIGKDGTIYFGS---DK  196 (330)
T ss_dssp             SCCEECTTSCEEEECT-TSEEEEECTTSCE---EEEEECS----------------SCCCSCCEECTTCCEEEES---SS
T ss_pred             eeeEEcCCCEEEEEcC-CCEEEEECCCCCE---eEEEecC----------------CCceeeeEEcCCCEEEEEe---CE
Confidence            4567777788888653 4678888876321   1111100                1134567899999999998   78


Q ss_pred             EEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          158 IRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       158 Irkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |.++|.+|  +..+...                -.....++ .+.+|.|||+.. ++.|.+++.+|.
T Consensus       197 l~~~d~~g~~~~~~~~~----------------~~~~~~~~-~~~~g~l~v~t~-~~gl~~~~~~g~  245 (330)
T 3hxj_A          197 VYAINPDGTEKWNFYAG----------------YWTVTRPA-ISEDGTIYVTSL-DGHLYAINPDGT  245 (330)
T ss_dssp             EEEECTTSCEEEEECCS----------------SCCCSCCE-ECTTSCEEEEET-TTEEEEECTTSC
T ss_pred             EEEECCCCcEEEEEccC----------------CcceeceE-ECCCCeEEEEcC-CCeEEEECCCCC
Confidence            99999777  2222111                01234555 678889999875 456778877665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.04  E-value=0.071  Score=51.54  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             cCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC--------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEE
Q 011435          134 FNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLL  205 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G--------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LY  205 (486)
                      +.+-..|+++++|.||++  .++.++++++..        ..+..|.    .|+.          . ++-+++|++|.||
T Consensus        40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~----~Gw~----------~-F~a~~fD~~G~LY  102 (236)
T 1tl2_A           40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN----GGWN----------Q-FQFLFFDPNGYLY  102 (236)
T ss_dssp             CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC----SCGG----------G-CSEEEECTTSCEE
T ss_pred             cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc----cccc----------c-ceEEEECCCCCEE
Confidence            456679999999999999  567899999732        2222222    1221          1 3445789999999


Q ss_pred             EEeCCCCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEee
Q 011435          206 VIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSR  263 (486)
Q Consensus       206 VaD~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~  263 (486)
                      ++  .+++|.|++.....      +.+.+.-.+.+|..-...--++..+..|.++...
T Consensus       103 av--~dG~iyr~~pP~~~------~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          103 AV--SKDKLYKASPPQSD------TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EE--ETTEEEEESCCCST------TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             Ee--CCCEEEEeCCCcCC------CCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            99  44899999874321      1122222445555333444666677888888777

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.89  E-value=0.13  Score=56.16  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             ccccCCcceEEEcC-CCCEEEEeCCC---------------------CEEEEEcCCC-----------ceEEcCCCCCCC
Q 011435          131 EARFNHPKGVTMDD-KGNLYVADTLN---------------------LAIRKIGDAG-----------VTTIAGGKSNVA  177 (486)
Q Consensus       131 ~a~Ln~P~GIavD~-dG~LYVAD~~n---------------------~rIrkid~~G-----------v~tiaGg~~g~~  177 (486)
                      ...|.+|.||++++ +|.||||-+.+                     ++|+++++++           +..++|......
T Consensus       380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~  459 (592)
T 3zwu_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccc
Confidence            45699999999997 88999998753                     4688886532           112222211100


Q ss_pred             C-cC---CCCccccccCCCceeEEEcCCCeEEEEeCC
Q 011435          178 G-FR---DGPSEDAKFSNDFDVVYVRPTCSLLVIDRG  210 (486)
Q Consensus       178 G-~~---DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  210 (486)
                      + ..   ........|+.|-+|+ +++.|+|||++-+
T Consensus       460 ~~~~~~~~~~~~~~~f~~PDNL~-fd~~G~LwI~eDg  495 (592)
T 3zwu_A          460 GTPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDG  495 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECC
T ss_pred             ccccccccccCCCCCccCCcceE-ECCCCCEEEEecC
Confidence            0 00   1123345699999998 7899999999764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.84  E-value=0.51  Score=48.60  Aligned_cols=110  Identities=13%  Similarity=0.173  Sum_probs=75.1

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.++++.+|+.++++-..++.|..++.++..   ...+.+.                -.....|+++++|.++++=..++
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---~~~~~~~----------------~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQL---LQTLTGH----------------SSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTSCE---EEEEECC----------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCE---EEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCCC
Confidence            4678999999877776777888888876432   2233331                11356899999999777666678


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|.+|  +.++.+..                .....++ ..++|.++++-..++.|+.++.+|.
T Consensus       490 ~i~iw~~~~~~~~~~~~h~----------------~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~~  540 (577)
T 2ymu_A          490 TVKLWNRNGQLLQTLTGHS----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNGQ  540 (577)
T ss_dssp             EEEEEETTSCEEEEEECCS----------------SCEEEEE-ECTTSSCEEEEETTSEEEEECTTSC
T ss_pred             EEEEEcCCCCEEEEEeCCC----------------CCEEEEE-EcCCCCEEEEEECcCEEEEEeCCCC
Confidence            999999888  55554421                1234566 4667776666667788888887764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.73  E-value=0.81  Score=42.76  Aligned_cols=111  Identities=7%  Similarity=-0.073  Sum_probs=72.4

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....++++++|+++++-..++.|..++.....   .......                -.....++++++|+++++-..+
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGR---QLQQHDF----------------TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEECCCCc---eEeeecC----------------CCceEEEEECCCCCEEEEEcCC
Confidence            35788999999876666677889999876321   1111110                1135789999999966665567


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|+.++...  ...+.+.                -.....++ ..+++.++++-..++.|+.++....
T Consensus       246 ~~i~~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLH----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             SCEEEEETTSSCEEEECCC----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcEEEEECCCCCeEEEcCC----------------ccceeEEE-ECCCCCEEEEecCCCcEEEEECCCC
Confidence            8899998766  3333221                11234565 5667777777777888888887754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.53  E-value=0.61  Score=45.16  Aligned_cols=129  Identities=12%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      .+...+..+..+..+..   ....++++++|+.+++-...+.|..++.....  ....+.+.                -.
T Consensus       107 Wd~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~----------------~~  165 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPV---DAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTR----------------GK  165 (321)
T ss_dssp             EETTTTEEEEEEECCTT---CCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECS----------------SS
T ss_pred             EECCCCCEEEEEeCCCc---cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCC----------------Cc
Confidence            34445555554443322   34678999999988888888889888876432  11112111                11


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA  212 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~  212 (486)
                      ....++++++|+++++=..++.|+.+|...   +.++.+..                .....++ ..+++.++++-..++
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~----------------~~v~~l~-~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA----------------MPIRSLT-FSPDSQLLVTASDDG  228 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------------SCCCEEE-ECTTSCEEEEECTTS
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC----------------CceeEEE-EcCCCCEEEEEcCCC
Confidence            346899999999766666678899998654   34443321                1124565 567787777777788


Q ss_pred             eEEEEECCCC
Q 011435          213 ALRQISLNQD  222 (486)
Q Consensus       213 rIr~id~~G~  222 (486)
                      .|+.++....
T Consensus       229 ~i~iwd~~~~  238 (321)
T 3ow8_A          229 YIKIYDVQHA  238 (321)
T ss_dssp             CEEEEETTTC
T ss_pred             eEEEEECCCc
Confidence            8888887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.39  E-value=0.73  Score=44.63  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+++++-..++.|..+|.....  ....+.+.                -..-..|+++++|.++++=..++
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~h----------------~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLHTLEGH----------------AMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCCCEEEECTTSCEEEEECTTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccc----------------CCceeEEEEcCCCCEEEEEcCCC
Confidence            4688999999987777778889999876421  11122221                11346899999999777767778


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC  224 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~  224 (486)
                      .|+.+|...   +.++.+..                .....++ ..+++.++++-..++.|+.++.....|
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~----------------~~v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHA----------------SWVLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCS----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eEEEEECCCcceeEEEcCCC----------------CceEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            899998654   34443321                1134565 566777777777788899998875433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.38  E-value=0.53  Score=44.07  Aligned_cols=107  Identities=10%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....++++++|.++++-..++.|..++.....   ...+.+.                -.....++++++|+++++-..+
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCC----------------ccceeEEEECCCCCEEEEecCC
Confidence            35788888888866666667788888876432   1222111                1246789999999976666668


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~  219 (486)
                      +.|+.++...   +......                 .....++ ..+++.++++-..++.|+.+++
T Consensus       287 g~i~~~~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          287 NLLNAWRTPYGASIFQSKES-----------------SSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECS-----------------SCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             CcEEEEECCCCeEEEEecCC-----------------CcEEEEE-ECCCCCEEEEecCCCeEEEEEE
Confidence            8999998655   2221111                 1234565 5666766666666777777663

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.24  E-value=0.33  Score=50.03  Aligned_cols=106  Identities=13%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ...+++++||.++++-..++.|..++.++..   ...+.+.                -...+.|+++++|.+.++=..++
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~~~~~---~~~~~~h----------------~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGH----------------SSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSCE---EEEEECC----------------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE---EEEEeCC----------------CCCEEEEEEcCCCCEEEEEECcC
Confidence            4789999999988877778889888876432   2333332                11357899999998555544578


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS  218 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id  218 (486)
                      .|+.+|.+|  +.++.|-.                ....+++ ..++|+.+++-..++.|+..|
T Consensus       531 ~v~lwd~~~~~~~~~~~h~----------------~~v~~~~-fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          531 TVKLWNRNGQLLQTLTGHS----------------SSVWGVA-FSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEECTTSCEEEEEECCS----------------SCEEEEE-ECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCCEEEEEcCCC----------------CCEEEEE-EcCCCCEEEEEeCCCEEEEeC
Confidence            899999887  55554421                1134666 466777667666667776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.14  E-value=0.8  Score=50.25  Aligned_cols=115  Identities=10%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ...+|+.|++|+|||+-..+ .|+++++++..   ...+...    .|.        .-+....|+.|++|+|||+-. +
T Consensus       496 ~i~~i~~d~~g~lWigt~~~-Gl~~~~~~~~~---~~~~~~~----~~l--------~~~~i~~i~~d~~g~lWi~T~-~  558 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGG-GVGIYTPDMQL---VRKFNQY----EGF--------CSNTINQIYRSSKGQMWLATG-E  558 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSS-CEEEECTTCCE---EEEECTT----TTC--------SCSCEEEEEECTTSCEEEEET-T
T ss_pred             eeEEEEEcCCCCEEEEEcCC-CEEEEeCCCCe---EEEccCC----CCC--------CCCeeEEEEECCCCCEEEEEC-C
Confidence            45789999999999987644 48889986432   2222211    110        112457899999999999976 4


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +-|.++|+.+  +..+...        +|...    +...+++ .|.+|+||++-  ++.|.++++...
T Consensus       559 Glv~~~d~~~~~~~~~~~~--------~gl~~----~~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~  612 (781)
T 3v9f_A          559 GLVCFPSARNFDYQVFQRK--------EGLPN----THIRAIS-EDKNGNIWAST--NTGISCYITSKK  612 (781)
T ss_dssp             EEEEESCTTTCCCEEECGG--------GTCSC----CCCCEEE-ECSSSCEEEEC--SSCEEEEETTTT
T ss_pred             CceEEECCCCCcEEEcccc--------CCCCC----ceEEEEE-ECCCCCEEEEc--CCceEEEECCCC
Confidence            4338898765  4444211        22211    1134675 78999999995  445999998854

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.00  E-value=2.3  Score=41.04  Aligned_cols=112  Identities=10%  Similarity=0.063  Sum_probs=73.9

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..+++.++|.++++-..++.|..+|.....  ....+.+.                -...+.|+++++|+++++=..++
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGH----------------ESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCC----------------cCCEEEEEEcCCCCEEEEEcCCC
Confidence            4678888999888887778888888875321  11222221                11357899999999777777788


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...   +.++....              .......++ ..++|.++++-..++.|+.++...
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDN--------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTT--------------CCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cEEEEECCCCcEEEEEccCC--------------cccceEEEE-ECCCCCEEEEECCCCeEEEEEccc
Confidence            999998754   33332110              011123455 577888888888888899998764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.90  E-value=0.27  Score=54.03  Aligned_cols=117  Identities=6%  Similarity=-0.031  Sum_probs=73.8

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....|+.|++|.|||+-.  +.|.++++.+..   ...+....       +.   ...-+....|+.|++|+|||+-.+ 
T Consensus       451 ~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~---~~~~~~~~-------~~---~~~~~~i~~i~~d~~g~lWigt~~-  514 (781)
T 3v9f_A          451 DVRVFYEDKNKKIWIGTH--AGVFVIDLASKK---VIHHYDTS-------NS---QLLENFVRSIAQDSEGRFWIGTFG-  514 (781)
T ss_dssp             CEEEEEECTTSEEEEEET--TEEEEEESSSSS---CCEEECTT-------TS---SCSCSCEEEEEECTTCCEEEEESS-
T ss_pred             eEEEEEECCCCCEEEEEC--CceEEEeCCCCe---EEecccCc-------cc---ccccceeEEEEEcCCCCEEEEEcC-
Confidence            346788888999999875  579999876432   22222110       00   001245779999999999999764 


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|.++++++  +..+...        ++..    -+....|+ .|.+|+|||+-. ++-|.+++....
T Consensus       515 ~Gl~~~~~~~~~~~~~~~~--------~~l~----~~~i~~i~-~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          515 GGVGIYTPDMQLVRKFNQY--------EGFC----SNTINQIY-RSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             SCEEEECTTCCEEEEECTT--------TTCS----CSCEEEEE-ECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             CCEEEEeCCCCeEEEccCC--------CCCC----CCeeEEEE-ECCCCCEEEEEC-CCceEEECCCCC
Confidence            3488899876  4444321        1111    11234564 789999999976 444488887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.41  E-value=2  Score=38.89  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=45.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCC-CcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPL-SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g-~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ...++++++||+.+++.. .+.|++++.++ ..   ...+...   .           .-.....++++++|. |+++..
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---~~~~~~~---~-----------~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---PEKVDTG---F-----------ATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---CEECCCT---T-----------CCCBCSCCEECTTSSEEEEEEC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---ceEeccc---c-----------ccccccceEECCCCCEEEEEEe
Confidence            368999999999555543 56899999874 32   2221110   0           012356889999998 555442


Q ss_pred             ---CCCEEEEEcCCC
Q 011435          154 ---LNLAIRKIGDAG  165 (486)
Q Consensus       154 ---~n~rIrkid~~G  165 (486)
                         ...+|+.++.++
T Consensus       105 ~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTG  119 (297)
T ss_dssp             TTTSSCEEEEEETTC
T ss_pred             CCCCcceEEEEECCC
Confidence               257888888655

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.21  E-value=1.2  Score=42.06  Aligned_cols=109  Identities=12%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|+++++|+++++-..++.|..++.....  ....+.+.                -..-..|+++++|+++++-..++
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGH----------------TGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hhhhhhhc----------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            4789999999977766667788888865322  12222221                11346899999998666655678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-----CeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-----AALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-----~rIr~id~~G  221 (486)
                      .|+.+|...   +.++...                 .....++ ..+++..+++-..+     +.|+.++...
T Consensus        97 ~i~iwd~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWKSP-----------------VPVKRVE-FSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             EEEEEETTTCCEEEEEECS-----------------SCEEEEE-ECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             eEEEEECCCCcEEEEeecC-----------------CCeEEEE-EccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            999998654   3333211                 1234565 45666666655555     7788877654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.15  E-value=1.3  Score=43.68  Aligned_cols=113  Identities=7%  Similarity=-0.011  Sum_probs=70.1

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCC
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNL  156 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~  156 (486)
                      ..|++.+||+++++-...+.|...+.....  ....+.|.                -..-..+++.++|. ++++-..++
T Consensus       131 ~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--~~~~~~~h----------------~~~V~~~~~~~~~~~~l~s~s~D~  192 (344)
T 4gqb_B          131 STVSVLSSGTQAVSGSKDICIKVWDLAQQV--VLSSYRAH----------------AAQVTCVAASPHKDSVFLSCSEDN  192 (344)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCc----------------CCceEEEEecCCCCCceeeecccc
Confidence            678899999988877777889888876421  11222221                11346788988875 777666678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+..|...   +.++.....              -.....+++...++.++++-..++.|+.+|....
T Consensus       193 ~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          193 RILLWDTRCPKPASQIGCSAP--------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             CEEEEETTSSSCEEECC------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             ccccccccccceeeeeeccee--------------eccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            899888654   333321100              0123456644456677777777788888887643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.99  E-value=1.7  Score=42.74  Aligned_cols=121  Identities=11%  Similarity=0.029  Sum_probs=76.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|++.++|..+++-...+.|..+|.....  ...++...    ...     .......-..++++++|.+.++-..++
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~----~~~-----~~~~~~~v~~~~~s~~g~~l~~g~~dg  320 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNRE----PDR-----NDNELPIVTSVAFSISGRLLFAGYSNG  320 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCC----CSS-----SCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEeccc----ccc-----cccccCceEEEEECCCCCEEEEEECCC
Confidence            4578888888888887778888888875321  11122211    000     011122346899999999888877889


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...   +..+.....   +         .-..-..++ ..++|.++++-..++.|+..+..+
T Consensus       321 ~i~vwd~~~~~~~~~~~~~~~---~---------h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          321 DCYVWDTLLAEMVLNLGTLQN---S---------HEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CEEEEETTTCCEEEEECCSCS---S---------CCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEECCCCceEEEEecccC---C---------CCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCC
Confidence            999998644   333321100   1         111235676 678888888888889999998875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.86  E-value=4.3  Score=38.06  Aligned_cols=111  Identities=10%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+++++-..++.|..++.....  ....+.+.                -..-..++++++|+++++=..++
T Consensus       110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A          110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAH----------------SDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--EEEEecCC----------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            3677888888877777777888888875321  11111111                11246789999998666666678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCC-ceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSND-FDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P-~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|...   +..+....                ..+ ..++ ..+++..+++-..++.|+.++....
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDD----------------NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSS----------------CCCEEEEE-ECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             cEEEEECCCCceeeEEeccC----------------CCceEEEE-ECCCCCEEEEEcCCCeEEEEECCCC
Confidence            899998654   33332210                011 2344 5666766666666777888887654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.84  E-value=2.6  Score=41.37  Aligned_cols=133  Identities=13%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             EEccCCcEEEEEe-cCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEE-ecccCCccccCCCCccccc
Q 011435           56 LQFENGYLVETVI-EGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLV-AGSFQGYTGHVDGKPNEAR  133 (486)
Q Consensus        56 v~~~~G~~vetv~-~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~v-aG~~~G~~G~~dG~~~~a~  133 (486)
                      .+...+..+.++. .+..  .....++++++|+++++-..++.|..++.....  ....+ .+.    .+          
T Consensus       159 wd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~----~~----------  220 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHP--DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--VVAEKDRPH----EG----------  220 (402)
T ss_dssp             EETTTTEEEEEECTTTCC--SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECSS----CS----------
T ss_pred             EECCCCCccEEEecCCCC--CceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--eeeeeccCC----CC----------
Confidence            4444555444442 1111  235789999999876666677899999976421  11111 111    11          


Q ss_pred             cCCcceEEEcCCCCEEEEe---CCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEE
Q 011435          134 FNHPKGVTMDDKGNLYVAD---TLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLV  206 (486)
Q Consensus       134 Ln~P~GIavD~dG~LYVAD---~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYV  206 (486)
                       ..+..++++++|.++++-   ..++.|+.+|...    +.......               -.....+++......|++
T Consensus       221 -~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~  284 (402)
T 2aq5_A          221 -TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT---------------SSGVLLPFFDPDTNIVYL  284 (402)
T ss_dssp             -SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC---------------CSSCEEEEEETTTTEEEE
T ss_pred             -CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC---------------CCceeEEEEcCCCCEEEE
Confidence             136789999999877765   5678899998765    22221110               012345665444446777


Q ss_pred             EeCCCCeEEEEECCCC
Q 011435          207 IDRGNAALRQISLNQD  222 (486)
Q Consensus       207 aD~gn~rIr~id~~G~  222 (486)
                      +...++.|+.++....
T Consensus       285 ~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          285 CGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EETTCSCEEEEEECSS
T ss_pred             EEcCCCeEEEEEecCC
Confidence            8877888999988753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.64  E-value=2  Score=42.53  Aligned_cols=109  Identities=12%  Similarity=0.021  Sum_probs=70.3

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      ..+++++||+++++-..++.|..++.....  ....+.|.                -..-..|++.++|+.+++-..++.
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~p~~~~l~s~s~d~~  188 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDRT  188 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccC----------------CCCEEEEEEcCCCCEEEEecCCCc
Confidence            578999999988877778889999876431  11222221                113468999999997777667789


Q ss_pred             EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      |+.+|...   +.++...                 .....+++...++.++++-..++.|+.++...
T Consensus       189 v~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          189 VRIWDLRTGQCSLTLSIE-----------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             EEEEETTTTEEEEEEECS-----------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             EEEEECCCCeeEEEEEcC-----------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            99998654   2333211                 01234553333677777777777888888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.63  E-value=4.9  Score=40.37  Aligned_cols=110  Identities=22%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             ceeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           77 PYKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ...+++++||+ |+++...  +..|+.++..+..   ...+.+.    .            .....++++++|+ |+++-
T Consensus       181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~---~~~l~~~----~------------~~~~~~~~spdg~~la~~~  241 (415)
T 2hqs_A          181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASF----P------------RHNGAPAFSPDGSKLAFAL  241 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEECC----S------------SCEEEEEECTTSSEEEEEE
T ss_pred             ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc---EEEeecC----C------------CcccCEEEcCCCCEEEEEE
Confidence            57889999998 5544433  3589999987532   3333331    0            1356899999998 66454


Q ss_pred             C--CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeC--CCCeEEEEECCCC
Q 011435          153 T--LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDR--GNAALRQISLNQD  222 (486)
Q Consensus       153 ~--~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~--gn~rIr~id~~G~  222 (486)
                      .  ++..|+.+|..+  +..+.+..                .....++ ..++|. |+++..  +..+|+.++..+.
T Consensus       242 ~~~g~~~i~~~d~~~~~~~~l~~~~----------------~~~~~~~-~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQIRQVTDGR----------------SNNTEPT-WFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCS----------------SCEEEEE-ECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             ecCCCceEEEEECCCCCEEeCcCCC----------------CcccceE-ECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            3  245799998765  44433210                0123455 355554 555543  3347888887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.56  E-value=4.9  Score=37.68  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+++++-..++.|..++.....  ....+.+.                -..-..++++++|+++++=..++
T Consensus        68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~d~  129 (312)
T 4ery_A           68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGH----------------SNYVFCCNFNPQSNLIVSGSFDE  129 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             eEEEEEcCCCCEEEEECCCCEEEEEECCCCc--EEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCCC
Confidence            4789999999988877778899999876432  12222221                11245788999998777666678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|...   +.++.+..                ..-..++ ..+++.++++-..++.|+.++....
T Consensus       130 ~i~iwd~~~~~~~~~~~~~~----------------~~v~~~~-~~~~~~~l~~~~~d~~i~~wd~~~~  181 (312)
T 4ery_A          130 SVRIWDVKTGKCLKTLPAHS----------------DPVSAVH-FNRDGSLIVSSSYDGLCRIWDTASG  181 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCS----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cEEEEECCCCEEEEEecCCC----------------CcEEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Confidence            899998654   34443210                0123454 4667776666667778888887643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.50  E-value=3.4  Score=41.63  Aligned_cols=110  Identities=15%  Similarity=0.069  Sum_probs=62.8

Q ss_pred             ceeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           77 PYKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ...+++++||+ |+++...  +..|+.++..+..   ...+.+.                -.....++++++|+ |+++-
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~----------------~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDG----------------RSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCC----------------SSCEEEEEECTTSSEEEEEE
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCC----------------CCcccceEECCCCCEEEEEE
Confidence            56889999998 6545432  4569999886432   2222221                01346789999998 55554


Q ss_pred             C--CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCC--CCeEEEEECCCC
Q 011435          153 T--LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRG--NAALRQISLNQD  222 (486)
Q Consensus       153 ~--~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g--n~rIr~id~~G~  222 (486)
                      .  +..+|+.+|.++  +..+....                .....++ ..++| .|+++...  ...|+.+++++.
T Consensus       286 ~~~g~~~i~~~d~~~~~~~~l~~~~----------------~~~~~~~-~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAPQRITWEG----------------SQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             CTTSSCEEEEEETTSSCCEECCCSS----------------SEEEEEE-ECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CCCCCcEEEEEECCCCCEEEEecCC----------------CcccCeE-ECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            3  234888888766  33332210                0122344 34555 35555433  357778887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.43  E-value=1.6  Score=42.20  Aligned_cols=139  Identities=14%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             cceeEEEccCCeEEEEECCC---CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435           76 VPYKIRVSEDGELFAVDEVN---SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n---~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD  152 (486)
                      ....++++++|.++++-..+   +.|..++.....  ....+.+......-. -+  ..+.-.....|+++++|+++++-
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQAS-LG--EFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC---------C--CBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCccccccc-cc--ccccCCcEEEEEECCCCCEEEEE
Confidence            35789999999977766666   789999876322  122222200000000 00  00011245789999999977766


Q ss_pred             CCCCEEEEEcCCC---ceEEcCCCCCCCCc-CC---CCc--cccccCCCceeEEEcCCC----------eEEEEeCCCCe
Q 011435          153 TLNLAIRKIGDAG---VTTIAGGKSNVAGF-RD---GPS--EDAKFSNDFDVVYVRPTC----------SLLVIDRGNAA  213 (486)
Q Consensus       153 ~~n~rIrkid~~G---v~tiaGg~~g~~G~-~D---G~~--~~a~f~~P~gIa~vd~~G----------~LYVaD~gn~r  213 (486)
                      ..++.|+.+|...   +.++...... .+. .|   |..  ....-.....++ ..++|          .++++-..++.
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~~~~-~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGVFDVK-FLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCEEEEE-EECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCceeEEE-eccccccccccccccceEEEecCCCc
Confidence            6788999999754   4455411000 000 00   000  000012245676 45665          67777777888


Q ss_pred             EEEEECCC
Q 011435          214 LRQISLNQ  221 (486)
Q Consensus       214 Ir~id~~G  221 (486)
                      |+.++..+
T Consensus       388 i~iw~~~~  395 (397)
T 1sq9_A          388 IRWFREAG  395 (397)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEcCC
Confidence            88888753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.42  E-value=3.3  Score=38.93  Aligned_cols=109  Identities=10%  Similarity=0.041  Sum_probs=67.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCE-EEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNL-YVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~L-YVAD~~n  155 (486)
                      ..+++++++|.++++-..++.|..++.....  ....+..                 -.....++++++|.. +++...+
T Consensus       221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYET-----------------DCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEEC-----------------SSCEEEEEECSSSSEEEEEECCC
T ss_pred             eeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeecC-----------------CCCceeEEecCCCceEEEeecCC
Confidence            5789999999977776677899999876432  1111111                 113568899998884 4444332


Q ss_pred             C-------------EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435          156 L-------------AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       156 ~-------------rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~  219 (486)
                      .             .|+.+|...   +..+.+.                -.....++ ..+++.++++-..++.|+.++.
T Consensus       282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH----------------FGPLNTVA-ISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             -------------CEEEEEETTTCCEEEEEECC----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEEE
T ss_pred             CceEEEEecCCCcceeEEEecCCCcchhheecc----------------cCcEEEEE-ECCCCCEEEEEcCCCeEEEEEC
Confidence            2             566666543   3333221                11234566 5678887777777888998887


Q ss_pred             CC
Q 011435          220 NQ  221 (486)
Q Consensus       220 ~G  221 (486)
                      +.
T Consensus       345 ~~  346 (369)
T 3zwl_B          345 EK  346 (369)
T ss_dssp             CH
T ss_pred             cc
Confidence            74

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.40  E-value=3  Score=40.32  Aligned_cols=108  Identities=7%  Similarity=0.023  Sum_probs=70.6

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n  155 (486)
                      ...+++.++|.++++-..++.|..++.++.   ....+.+.                -.....|+++++|. ++++-..+
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGLDGH---EIFKEKLH----------------KAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTSC---EEEEEECS----------------SSCEEEEEECSSCTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEECCCC---EEEEeccC----------------CCcEEEEEECCCCCCEEEEEeCC
Confidence            467888888887777667788888887532   12222221                12457899999998 77776677


Q ss_pred             CEEEEEcCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC-CCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP-TCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~-~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...       +.++ +.                -.....++ ..+ ++.++++-..++.|+.++...
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~-~~----------------~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEM-PH----------------EKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEE-EC----------------SSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CEEEEEeCCCCCcccceEEEe-cC----------------CCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCC
Confidence            8899888542       2222 21                01234566 455 777777777778899998764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.28  E-value=1.4  Score=48.45  Aligned_cols=114  Identities=7%  Similarity=0.031  Sum_probs=72.2

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ...|..|++|.|||+..  +.|.++++++..   . .+... ....+        -.-+....|+.|++|+|||+-..  
T Consensus       500 i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~---~-~~~~~-~~~~~--------l~~~~i~~i~~d~~g~lWigT~~--  562 (795)
T 4a2l_A          500 ITTLFRDSHKRLWIGGE--EGLSVFKQEGLD---I-QKASI-LPVSN--------VTKLFTNCIYEASNGIIWVGTRE--  562 (795)
T ss_dssp             EEEEEECTTCCEEEEES--SCEEEEEEETTE---E-EECCC-SCSCG--------GGGSCEEEEEECTTSCEEEEESS--
T ss_pred             EEEEEECCCCCEEEEeC--CceEEEeCCCCe---E-EEecC-CCCCC--------CCCCeeEEEEECCCCCEEEEeCC--
Confidence            46788999999999886  468888875422   1 11110 00001        01134568999999999999763  


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|.++|+..  +..+...        +|...    +...+|+ .|.+|+||++-  ++.|.++++...
T Consensus       563 Gl~~~d~~~~~~~~~~~~--------~gl~~----~~i~~i~-~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          563 GFYCFNEKDKQIKRYNTT--------NGLPN----NVVYGIL-EDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             CEEEEETTTTEEEEECGG--------GTCSC----SCEEEEE-ECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             CceeECCCCCcEEEeCCC--------CCCch----hheEEEE-ECCCCCEEEEc--CCceEEEcCCCC
Confidence            788998765  4444211        12211    1124564 78999999997  467999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.25  E-value=2.1  Score=42.10  Aligned_cols=112  Identities=12%  Similarity=0.057  Sum_probs=67.0

Q ss_pred             ceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcc-----cccEEEecccCCccccCCCCccccccCCcceEEEcCCC-CEE
Q 011435           77 PYKIRVSE-DGELFAVDEVNSNIVKITPPLSQY-----SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLY  149 (486)
Q Consensus        77 P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~-----~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LY  149 (486)
                      -.++++++ +++++++-..++.|..++......     .....+.+.                -.....|+++++| +++
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~l  147 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----------------TKRVGIVAWHPTAQNVL  147 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----------------SSCEEEEEECSSBTTEE
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----------------CCeEEEEEECcCCCCEE
Confidence            47899999 888888777788999988764311     012222221                1245789999998 566


Q ss_pred             EEeCCCCEEEEEcCCC---ceEE--cCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          150 VADTLNLAIRKIGDAG---VTTI--AGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       150 VAD~~n~rIrkid~~G---v~ti--aGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++-..++.|+.+|...   +.++  .+..                .....++ ..+++.++++-..++.|+.+++..
T Consensus       148 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGTGAAVLTLGPDVHP----------------DTIYSVD-WSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECTTTCC----------------SCEEEEE-ECTTSSCEEEEETTSEEEEEETTT
T ss_pred             EEEcCCCEEEEEECCCCCccEEEecCCCC----------------CceEEEE-ECCCCCEEEEEecCCcEEEEeCCC
Confidence            6655678888888654   3444  2110                1123444 344555555544556666666654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.94  E-value=2.8  Score=46.01  Aligned_cols=117  Identities=12%  Similarity=0.059  Sum_probs=72.9

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      -.+|+.|.+|+ |||+-.. +.|.++++.+..   ...+...        +..   -.-+....|+.|++|+|||+-.  
T Consensus       408 v~~i~~d~~g~~lWigt~~-~Gl~~~d~~~~~---~~~~~~~--------~~~---l~~~~v~~i~~d~~g~lwigt~--  470 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHA-GGLSILHRNSGQ---VENFNQR--------NSQ---LVNENVYAILPDGEGNLWLGTL--  470 (795)
T ss_dssp             EEEEEEETTTTEEEEEETT-TEEEEEETTTCC---EEEECTT--------TSC---CSCSCEEEEEECSSSCEEEEES--
T ss_pred             EEEEEEcCCCCEEEEEeCc-CceeEEeCCCCc---EEEeecC--------CCC---cCCCeeEEEEECCCCCEEEEec--
Confidence            45788899999 9998643 469999986432   2333211        000   0112467899999999999975  


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|.++++..  +..+.... ..    .+.    .-.....++ .|++|+|||+-.  +.|.+++....
T Consensus       471 ~Gl~~~~~~~~~~~~~~~~~-~~----~~~----~~~~i~~i~-~d~~g~lWigt~--~Gl~~~~~~~~  527 (795)
T 4a2l_A          471 SALVRFNPEQRSFTTIEKEK-DG----TPV----VSKQITTLF-RDSHKRLWIGGE--EGLSVFKQEGL  527 (795)
T ss_dssp             SCEEEEETTTTEEEECCBCT-TC----CBC----CCCCEEEEE-ECTTCCEEEEES--SCEEEEEEETT
T ss_pred             CceeEEeCCCCeEEEccccc-cc----ccc----CCceEEEEE-ECCCCCEEEEeC--CceEEEeCCCC
Confidence            5688998765  33332110 00    000    012234564 799999999987  46888887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=92.92  E-value=1.9  Score=40.69  Aligned_cols=113  Identities=10%  Similarity=0.028  Sum_probs=69.1

Q ss_pred             ceeEEEccC---CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           77 PYKIRVSED---GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~d---G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      -..|+++++   |+++++-..++.|..++...........+.+.                -..-..|+++++|+++++=.
T Consensus        42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH----------------TGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC----------------SSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc----------------cCCEEEEEECcCCCEEEEEc
Confidence            478899988   68777766778888888763110111222221                11356899999998655555


Q ss_pred             CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEE-cCCCeEEEEeCCCCeEEEEECCC
Q 011435          154 LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV-RPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       154 ~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v-d~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .++.|+.+|...  ...+.+..                .....+++. .+++.++++-..++.|+.++...
T Consensus       106 ~dg~v~iwd~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQIAQHD----------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             TTSEEEEEETTTTEEEEEEECS----------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             CCCcEEEEEcCCCCceeecccc----------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            678999998766  32232210                112345421 56677666666677788888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.84  E-value=1.1  Score=44.77  Aligned_cols=111  Identities=16%  Similarity=0.110  Sum_probs=72.4

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.+|+++++|+++++-..++.|..++..+..  ....+.|       +         -..-..++++++|+.+++=..++
T Consensus       153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~~-------h---------~~~V~~v~~~p~~~~l~s~s~D~  214 (410)
T 1vyh_C          153 VQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMHG-------H---------DHNVSSVSIMPNGDHIVSASRDK  214 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCCC-------C---------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcC-------C---------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            4678888888887777777788888775321  0111111       1         11346899999999777666778


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|...   +.++.+..                ..-..++ ..++|.++++-..++.|+.++....
T Consensus       215 ~i~~wd~~~~~~~~~~~~h~----------------~~v~~~~-~~~~g~~l~s~s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKTFTGHR----------------EWVRMVR-PNQDGTLIASCSNDQTVRVWVVATK  266 (410)
T ss_dssp             EEEEEETTTCCEEEEEECCS----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             eEEEEECCCCcEEEEEeCCC----------------ccEEEEE-ECCCCCEEEEEcCCCeEEEEECCCC
Confidence            999998654   45554321                0112344 5677888888878888998887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.84  E-value=2.2  Score=41.73  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=68.0

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.++++.++|+++++-...+.|..+|.....  ....+...              ........++++++|.+.++-..++
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~--------------~~~~~~~~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKE--------------SIIFGASSVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCT--------------TCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCC--------------CcccceeEEEEeCCCCEEEEEECCC
Confidence            4678888998887777777888888875321  11111110              0112356889999999777766678


Q ss_pred             EEEEEcCC-C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435          157 AIRKIGDA-G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI  217 (486)
Q Consensus       157 rIrkid~~-G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i  217 (486)
                      .|+.+|.. +  +.++.+..                .....++ ..++|..+++-..++.|+.+
T Consensus       307 ~i~vwd~~~~~~~~~l~~h~----------------~~v~~l~-~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          307 TINVWDVLKGSRVSILFGHE----------------NRVSTLR-VSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CEEEEETTTCSEEEEECCCS----------------SCEEEEE-ECTTSSCEEEEETTSEEEEE
T ss_pred             cEEEEECCCCceEEEEECCC----------------CcEEEEE-ECCCCCEEEEEcCCCCEEec
Confidence            89999863 3  44444321                1234566 56777777777677777765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=92.79  E-value=2.7  Score=40.51  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=67.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ..+|++.++|+++++-..++.|..+|.....   .......             ......-..++++++|.++++=..++
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~-------------~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSH-------------DNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECC-------------TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---EEEEEcc-------------CCcccceEEEEECCCCCEEEEECCCC
Confidence            5788999999988887778889988875321   1111110             00111346789999999777777788


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI  217 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i  217 (486)
                      .|+.+|...   +.++.+..                ..-..++ ..++|.++++-..++.|+..
T Consensus       293 ~i~vwd~~~~~~~~~~~~h~----------------~~v~~~~-~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          293 NCNVWDALKADRAGVLAGHD----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEEETTTCCEEEEEECCS----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             eEEEEEcccCcEeeEeecCC----------------CcEEEEE-EcCCCCEEEEEcCCccEEec
Confidence            999998644   44454321                1123455 46667666666666666654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.79  E-value=0.84  Score=43.58  Aligned_cols=114  Identities=11%  Similarity=-0.019  Sum_probs=67.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+++++-..++.|..++.++........+.+.                -.....|+++++|+++++=..++
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC----------------CCcccEEEEeCCCCEEEEEcCCC
Confidence            47889999999777777788999888764311112222221                11357899999998666555567


Q ss_pred             EEEEEcCCC--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...  . ..+.-..              .-.....++ ..+++.++++-..++.|+.++.+.
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~--------------~~~~v~~~~-~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILR--------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCC--------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             eEEEEECCCCeeeeeEEeec--------------CCCceeEEE-ECCCCCEEEEEeCCCEEEEEEecC
Confidence            788887543  1 1221110              001234565 455665555555667777766654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.65  E-value=4  Score=36.85  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=60.0

Q ss_pred             ceeEEEccCCe-EEEEEC---CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           77 PYKIRVSEDGE-LFAVDE---VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~---~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..++++++||. |+++..   ...+|+.++.++..   ...+...                 .....++++++|+ |+++
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~-----------------~~~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT---PRLMTKN-----------------LPSYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC---CEECCSS-----------------SSEEEEEECTTSSEEEEE
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc---eEEeecC-----------------CCccceEECCCCCEEEEE
Confidence            46789999998 444442   25688888876432   2222211                 1256789999998 5544


Q ss_pred             eCCCC--EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEe--CCCCeEEEEECCC
Q 011435          152 DTLNL--AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVID--RGNAALRQISLNQ  221 (486)
Q Consensus       152 D~~n~--rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD--~gn~rIr~id~~G  221 (486)
                      ...++  +|+.++.++  +..+...                -.....++ ..++|. |+++.  .+..+|+.++..+
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~-~s~dg~~l~~~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHG----------------EGRNDGPD-YSPDGRWIYFNSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCS----------------SSCEEEEE-ECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             ECCCCceEEEEEECCCCcceEcccC----------------CCccccce-ECCCCCEEEEEecCCCCccEEEECCCC
Confidence            43344  566666654  3333221                01234565 455554 56554  3456677777554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.64  E-value=2.7  Score=39.90  Aligned_cols=110  Identities=8%  Similarity=0.020  Sum_probs=73.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.+|+++++|.++++-...+.|...+.....  ....+.+.                -..-..+++.++|+++++=..++
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVT----------------ETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECC----------------SSCEEEEEEEGGGTEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeecc----------------CCcEEEEEEeCCCCEEEEECCCC
Confidence            4789999999987777778899999876432  12222221                00235788888999777666778


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...   +.++.+..                ..-..++ ..+++.++++-..++.|+.++...
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~----------------~~v~~~~-~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHP----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCS----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             EEEEEECCCCcEEEEEeCCC----------------CcEEEEE-EcCCCCEEEEECCCCeEEEEECCC
Confidence            999998654   44443321                1124565 567777777777888888888764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.61  E-value=5.7  Score=38.92  Aligned_cols=114  Identities=7%  Similarity=-0.048  Sum_probs=68.3

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      .++++.+|+.|.++. .++.|...+.+............     .|+         -..-+.|+++++|+++++=..++.
T Consensus        86 ~~~~~s~d~~l~~~s-~dg~v~lWd~~~~~~~~~~~~~~-----~~H---------~~~V~~v~~spdg~~l~sgs~d~~  150 (344)
T 4gqb_B           86 ADLTWVGERGILVAS-DSGAVELWELDENETLIVSKFCK-----YEH---------DDIVSTVSVLSSGTQAVSGSKDIC  150 (344)
T ss_dssp             EEEEEETTTEEEEEE-TTSEEEEEEECTTSSCEEEEEEE-----ECC---------SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEeCCCeEEEEE-CCCEEEEEeccCCCceeEeeccc-----cCC---------CCCEEEEEECCCCCEEEEEeCCCe
Confidence            568888888776654 56788888875432111111111     111         112468999999997776666788


Q ss_pred             EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      |+..|...   +.++.+..                ..-..+++...+..++++-..++.|+.+|....
T Consensus       151 i~iwd~~~~~~~~~~~~h~----------------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~  202 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHA----------------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP  202 (344)
T ss_dssp             EEEEETTTTEEEEEECCCS----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred             EEEEECCCCcEEEEEcCcC----------------CceEEEEecCCCCCceeeecccccccccccccc
Confidence            99998654   45554321                112345543333467777777788888887643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.40  E-value=1.7  Score=41.89  Aligned_cols=109  Identities=5%  Similarity=-0.041  Sum_probs=68.2

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|.++++-..++.|..++.....  ....+.+.                -.....++++++| ++++-..++
T Consensus       250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~-~l~~~~~d~  310 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--SQNCFYGH----------------SQSIVSASWVGDD-KVISCSMDG  310 (425)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEECSSSBS--CSEEECCC----------------SSCEEEEEEETTT-EEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCc--cceEecCC----------------CccEEEEEECCCC-EEEEEeCCC
Confidence            3567787887766666666778777765321  11222211                1135689999998 666666778


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...   +..+.+..                .....++ ..+++.++++-..++.|+.++...
T Consensus       311 ~i~i~d~~~~~~~~~~~~~~----------------~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          311 SVRLWSLKQNTLLALSIVDG----------------VPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEEEEETTTTEEEEEEECTT----------------CCEEEEE-ECTTSSEEEEEETTSCEEEEECHH
T ss_pred             cEEEEECCCCcEeEecccCC----------------ccEEEEE-EcCCCCEEEEEECCCeEEEEECCC
Confidence            999999754   33443210                1234565 566777777777778888888764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.37  E-value=1.6  Score=42.39  Aligned_cols=112  Identities=11%  Similarity=0.057  Sum_probs=74.3

Q ss_pred             ceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      -.++++.+ +++++++-..++.|..++..+.   ....+.+.    .+         .-.....++++++|+++++-..+
T Consensus       121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~----~~---------~~~~v~~~~~~~~~~~l~~~~~d  184 (383)
T 3ei3_B          121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKT----DS---------WDYWYCCVDVSVSRQMLATGDST  184 (383)
T ss_dssp             EEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECC----CC---------SSCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEecc----CC---------CCCCeEEEEECCCCCEEEEECCC
Confidence            57889988 6777777667788999988742   23333331    01         01235789999999966666667


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|..+  +.++.+..                .....++ ..+++. ++++-..++.|+.++...
T Consensus       185 ~~i~i~d~~~~~~~~~~~h~----------------~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          185 GRLLLLGLDGHEIFKEKLHK----------------AKVTHAE-FNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             SEEEEEETTSCEEEEEECSS----------------SCEEEEE-ECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCEEEEECCCCEEEEeccCC----------------CcEEEEE-ECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            8999999877  45554321                1234566 456665 777777788888888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.23  E-value=0.99  Score=45.20  Aligned_cols=111  Identities=13%  Similarity=0.181  Sum_probs=73.0

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..+++.++|.++++-..++.|..++.....  ...++.|.                -..-..|+++++|+++++=..++
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h----------------~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGH----------------TDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecc----------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            4678999999988888888899999876432  12233321                11346899999999777766778


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|..+   +.++.+..                ..-..++ ..+++..+++-..++.|+.++....
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~----------------~~V~~v~-~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHD----------------HNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCS----------------SCEEEEE-ECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEeCCCCceeEEEcCCC----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCC
Confidence            888888766   23332210                1123455 4566766677777788888887643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=92.05  E-value=9.7  Score=37.26  Aligned_cols=118  Identities=9%  Similarity=0.048  Sum_probs=75.9

Q ss_pred             ceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      -..+++.+ +++++++-..++.|..+|..... .....+.|.                -..-+.|+++++|+++++=..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH----------------EGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC----------------SSCCCEEEECTTSSEEEEECSS
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc----------------CCCeEEEEEecCCCeEEEEcCC
Confidence            35677765 78888888888889988875211 112233331                1135689999999988887888


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...   +.++.....    .     ..........++ ..++|.++++-..++.|+.++...
T Consensus       271 ~~i~lwd~~~~~~~~~~~~~~~----~-----~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          271 GTCRLFDMRTGHQLQVYNREPD----R-----NDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             SCEEEEETTTTEEEEEECCCCS----S-----SCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTT
T ss_pred             CeEEEEECCCCcEEEEeccccc----c-----cccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCC
Confidence            9999998754   334332110    0     001112235666 577888888888889999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=91.94  E-value=5.8  Score=38.29  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|+++++|+++++-..++.|...+.+.........+.|.                -..-..|+++++|+++++=..++
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCCCCEEEEEECCC
Confidence            47899999999777766677777776543211011122221                11346899999999777666667


Q ss_pred             EEEEEcCCC------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+..|...      +..+.+..                ..-..++ ..+++.++++-..++.|+.++...
T Consensus       128 ~v~iwd~~~~~~~~~~~~~~~h~----------------~~v~~~~-~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          128 SVWVWEVDEEDEYECVSVLNSHT----------------QDVKHVV-WHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             CEEEEEECTTSCEEEEEEECCCC----------------SCEEEEE-ECSSSSCEEEEETTSCEEEEEEET
T ss_pred             eEEEEECCCCCCeEEEEEecCcC----------------CCeEEEE-ECCCCCEEEEEeCCCcEEEEEecC
Confidence            788777532      12222110                1123455 456676666666677788777654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.93  E-value=5.4  Score=38.83  Aligned_cols=128  Identities=10%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      .-..++++++|+++++-..++.|..++.....  ....+.+.                -.....|+++++|+++++-..+
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGH----------------RATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECC----------------SSCEEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCC----------------CCcEEEEEEcCCCCEEEEEcCC
Confidence            35788999999877777777889988876332  12233221                1135689999999866665567


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCC-----cC-CCC--ccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAG-----FR-DGP--SEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G-----~~-DG~--~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|+.+|...   +.++.+.......     +. ++.  .....-.....++ ..++|.++++-..++.|+.++....
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE-FGTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCTTEEEEEEETTSCEEEEETTTC
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE-EcCCCCEEEEEcCCCeEEEEECCCC
Confidence            8888888654   4444331100000     00 000  0000011223343 4567766666667777888887643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=91.91  E-value=8.5  Score=36.30  Aligned_cols=129  Identities=9%  Similarity=0.023  Sum_probs=78.6

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      .+...+..+..+.....   .-..+++.++|+++++-...+.|..++.....  ....+.+.                -.
T Consensus        40 Wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h----------------~~   98 (304)
T 2ynn_A           40 WNYETQVEVRSIQVTET---PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAH----------------PD   98 (304)
T ss_dssp             EETTTTEEEEEEECCSS---CEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SS
T ss_pred             EECCCCceeEEeeccCC---cEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--EEEEEeCC----------------CC
Confidence            45555555554432211   13577888999988877788899999976432  12222221                11


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC---c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG---V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      .-..|+++++|.++++=..++.|+..|...   + .++.+..                ..-..+++...++.++++-..+
T Consensus        99 ~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~----------------~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE----------------HFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC----------------SCEEEEEECTTCTTEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC----------------CcEEEEEECCCCCCEEEEEeCC
Confidence            346899999999777766778888888543   2 2332210                1123555433356777777777


Q ss_pred             CeEEEEECCC
Q 011435          212 AALRQISLNQ  221 (486)
Q Consensus       212 ~rIr~id~~G  221 (486)
                      +.|+.++...
T Consensus       163 ~~v~iwd~~~  172 (304)
T 2ynn_A          163 RTVKVWSLGQ  172 (304)
T ss_dssp             SEEEEEETTC
T ss_pred             CeEEEEECCC
Confidence            8888888754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.70  E-value=2.5  Score=40.79  Aligned_cols=130  Identities=12%  Similarity=0.033  Sum_probs=72.5

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....++++++| ++++-..++.|..++.....  ....+.+.    .++.      ..-.....|+++++|+++++-..+
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----~~h~------~~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFESQ----HSMI------NNSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEECC----C---------CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CceEEEECCCc-eEEEEeCCCcEEEEECCCCc--eeEEEecc----cccc------ccCCccceEEECCCCCEEEEEecC
Confidence            36789999999 88888888899999976321  11122210    0000      001145789999999966665555


Q ss_pred             ---CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 ---LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ---~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                         +.|+.+|...   +..+.+............   +.-.....++ ..+++.++++-..++.|+.++....
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEF---AHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCB---SBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCceEEEEECCCCcccceeccCccccccccccc---ccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence               7899998654   444443100000000000   0011234555 4566766666667778888887643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.65  E-value=8.2  Score=41.37  Aligned_cols=129  Identities=9%  Similarity=0.013  Sum_probs=74.4

Q ss_pred             EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      .+...+..+.++.....   .-.+++++++|.++++-..++.|..++.....  ....+.+.                -.
T Consensus        40 wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~----------------~~   98 (814)
T 3mkq_A           40 WNYETQVEVRSIQVTET---PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAH----------------PD   98 (814)
T ss_dssp             EETTTTEEEEEEECCSS---CEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SS
T ss_pred             EECCCCceEEEEecCCC---cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecC----------------CC
Confidence            45556666665542211   25789999999966666668899999876432  12222221                11


Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      ....++++++|...++=..++.|+.++...    ...+.+..                .....+++...++.++++-..+
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----------------~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE----------------HFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS----------------SCEEEEEEETTEEEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC----------------CcEEEEEEEcCCCCEEEEEeCC
Confidence            457899999998544444567888887543    23333211                0123444332255555555566


Q ss_pred             CeEEEEECCC
Q 011435          212 AALRQISLNQ  221 (486)
Q Consensus       212 ~rIr~id~~G  221 (486)
                      +.|+.++...
T Consensus       163 g~v~vwd~~~  172 (814)
T 3mkq_A          163 RTVKVWSLGQ  172 (814)
T ss_dssp             SEEEEEETTC
T ss_pred             CeEEEEECCC
Confidence            6676666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=91.50  E-value=3.8  Score=39.55  Aligned_cols=72  Identities=15%  Similarity=0.057  Sum_probs=42.3

Q ss_pred             ceeEEEcc-CCe-E-EEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435           77 PYKIRVSE-DGE-L-FAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L  148 (486)
Q Consensus        77 P~GlAVd~-dG~-L-YVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L  148 (486)
                      ...+++++ ||. | |+.+..    ..+|+.++.++..   ...+...   .    .+       .....+++++||+ |
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~---~----~~-------~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTH---A----EG-------ESCTHEFWVPDGSAL  252 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCC---C----TT-------EEEEEEEECTTSSCE
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeC---C----CC-------cccccceECCCCCEE
Confidence            46788999 987 4 444422    4478888876532   2222221   0    00       0123568999998 5


Q ss_pred             -EEEeCCCC---EEEEEcCCC
Q 011435          149 -YVADTLNL---AIRKIGDAG  165 (486)
Q Consensus       149 -YVAD~~n~---rIrkid~~G  165 (486)
                       |+++....   .|+++|.++
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTT
T ss_pred             EEEecCCCCCcceEEEEecCC
Confidence             66664332   399999765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=91.44  E-value=6.6  Score=38.21  Aligned_cols=111  Identities=9%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             eeEEEcc--CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           78 YKIRVSE--DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        78 ~GlAVd~--dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ..+++.+  +|+++++-..++.|..+|.....  ....+.+.                -..-+.|+++++|+++++=..+
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETH----------------ESDVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC----------------CCCeEEEEEeCCCCEEEEEeCC
Confidence            4566654  56777776677888888875322  11222221                1134689999999977776677


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...   +..+....              .......++ ..++|.++++-..++.|+.++...
T Consensus       262 ~~v~lwd~~~~~~~~~~~~~~--------------~~~~~~~~~-~s~~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSKES--------------IIFGASSVD-FSLSGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             SCEEEEETTTTEEEEEECCTT--------------CCSCEEEEE-ECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEECCCCcEEEEEcCCC--------------cccceeEEE-EeCCCCEEEEEECCCcEEEEECCC
Confidence            8899998654   23332110              011223455 567787777777788899998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.43  E-value=2.6  Score=42.17  Aligned_cols=115  Identities=11%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             eeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeCCC
Q 011435           78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADTLN  155 (486)
Q Consensus        78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~n  155 (486)
                      ..|++.| +++++++-..++.|...+.+...  ....+..     .|+         -..-++|++++ +|+++++=..+
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~-----~gH---------~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKG-----IGA---------GGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECC-----CSS---------SCCCCEEEECSSCTTEEEEECSS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEc-----cCC---------CCCEEEEEEeCCCCCEEEEEeCC
Confidence            6789987 56777776777889988876432  1112111     111         01246899997 68877776777


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|+..|..+  +..+.....             .-..-..++ ..+++.++++-..++.|+.++.++.
T Consensus       187 ~~v~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~l~~g~~dg~i~~wd~~~~  241 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFASSDT-------------INIWFCSLD-VSASSRMVVTGDNVGNVILLNMDGK  241 (435)
T ss_dssp             SCEEEEETTSCEEEEEECCSS-------------CSCCCCCEE-EETTTTEEEEECSSSBEEEEESSSC
T ss_pred             CEEEEeeccCCceeEEeccCC-------------CCccEEEEE-ECCCCCEEEEEeCCCcEeeeccCcc
Confidence            8899999876  444433210             001123455 4667777777778888999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.40  E-value=3.4  Score=40.05  Aligned_cols=114  Identities=7%  Similarity=0.008  Sum_probs=71.4

Q ss_pred             cceeEEEccCC-eEEEEECCCC---EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           76 VPYKIRVSEDG-ELFAVDEVNS---NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        76 ~P~GlAVd~dG-~LYVaD~~n~---rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      ....++++++| .++++-..++   .|..++..... .....+.      .+         .-.....|++++ +|++++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~------~~---------~~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN------QG---------HQKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC------SC---------CSSCEEEEEECSSCSSCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee------cC---------ccCceeEEEeCCCCCCeEE
Confidence            35788888887 4666655555   78888765321 0000110      01         112457899998 888666


Q ss_pred             EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCCC
Q 011435          151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G~  222 (486)
                      +-..++.|+.+|...   +.++.+..                .....++ ..+++ .++++-..++.|+.+++...
T Consensus       280 s~~~dg~v~~wd~~~~~~~~~~~~~~----------------~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQLSQFPARG----------------NWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EEESSSEEEEECSSSCCEEEEEECSS----------------SCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             EEeCCCCEEEeeCCCCccceeecCCC----------------CceEEEE-ECCCCCCEEEEEecCCcEEEEEccCC
Confidence            666678999998654   44443321                1234676 45666 78888888899999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.27  E-value=4.6  Score=39.85  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=70.2

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~n  155 (486)
                      -..+++.++|+.+++-...+.|..++.....   .......                -.....+++.+ +|+++++-..+
T Consensus       168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~s~d  228 (393)
T 1erj_A          168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSI----------------EDGVTTVAVSPGDGKYIAAGSLD  228 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEEC----------------SSCEEEEEECSTTCCEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEEEc----------------CCCcEEEEEECCCCCEEEEEcCC
Confidence            4678899999877777778889888876422   1111110                01356788888 88877776677


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...   +..+........+.         -.....++ ..++|.++++-..++.|+.+++..
T Consensus       229 ~~v~iwd~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~-~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          229 RAVRVWDSETGFLVERLDSENESGTGH---------KDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCC---------SSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEECCCCcEEEeecccccCCCCC---------CCCEEEEE-ECCCCCEEEEEeCCCEEEEEECCC
Confidence            8899998654   33332110000010         11234565 567777777777788888888764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.24  E-value=4.1  Score=38.35  Aligned_cols=113  Identities=18%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             ceeEEEccC----CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435           77 PYKIRVSED----GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA  151 (486)
Q Consensus        77 P~GlAVd~d----G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA  151 (486)
                      -..+++.++    |.++++-..++.|..++.....  ....+.+.                -.....|++++ +++++++
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGH----------------GNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--EEEEEESC----------------CSCEEEEEECSSCTTEEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--EeeeecCC----------------CCcEEEEEECCCCCCEEEE
Confidence            477888887    6777777778899999976432  12222221                11457899999 8886666


Q ss_pred             eCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          152 DTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       152 D~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      =..++.|+.+|...   +..+... .   +         .-.....++ ..+++.++++-..++.|+.++...
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~-~---~---------~~~~v~~~~-~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGV-E---G---------HRDEVLSAD-YDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECST-T---S---------CSSCEEEEE-ECTTSSEEEEEETTSCEEEEESCS
T ss_pred             EeCCCeEEEEEeecCeEEEEeccc-c---c---------ccCceeEEE-ECCCCCEEEEecCCCCEEEEECCC
Confidence            55678899998654   3343210 0   0         011245666 466777777777778899999875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.02  E-value=5  Score=43.69  Aligned_cols=112  Identities=18%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ...|..|.+|+|||+...++.|.++++...   ....+...  +..          .-+.+..|+.|.+|+|||+-.  +
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~---~~~~~~~~--~~~----------~~~~~~~i~~d~~g~lWigt~--~  536 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRTR---EVTKLFAD--ELT----------GEKSPNYLLCDEDGLLWVGFH--G  536 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTTT---EEEEECTT--TSC----------GGGCEEEEEECTTSCEEEEET--T
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCCC---ceEEecCC--CcC----------CCcccceEEECCCCCEEEEec--C
Confidence            467889999999994333456999998643   22322210  000          013577999999999999963  5


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      -|.++++..  +..+.-         ++..    -+...+|+ . ++|+|||+-  ++-|.++++...
T Consensus       537 Gl~~~~~~~~~~~~~~~---------~gl~----~~~i~~i~-~-~~g~lWi~t--~~Gl~~~~~~~~  587 (758)
T 3ott_A          537 GVMRINPKDESQQSISF---------GSFS----NNEILSMT-C-VKNSIWVST--TNGLWIIDRKTM  587 (758)
T ss_dssp             EEEEECC--CCCCBCCC---------CC-------CCEEEEE-E-ETTEEEEEE--SSCEEEEETTTC
T ss_pred             ceEEEecCCCceEEecc---------cCCC----ccceEEEE-E-CCCCEEEEC--CCCeEEEcCCCc
Confidence            699999765  332210         1111    12234554 3 489999987  345899998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.97  E-value=3.4  Score=39.74  Aligned_cols=122  Identities=11%  Similarity=-0.033  Sum_probs=65.6

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcC----CCCcc-c---ccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITP----PLSQY-S---RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~----~g~~~-~---~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      -.+++++++|. ++++-..++.|..++.    ..... .   ....+.....+...      ....-..-..|+++++|+
T Consensus        48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS------SGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------------CBCEEEEEECTTSS
T ss_pred             eEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc------ccCCCCceEEEEEcCCCC
Confidence            57899999998 7777667788888876    43210 0   01112211100000      000112457899999998


Q ss_pred             EEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          148 LYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       148 LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++++=..++.|+.++.++  +..+.+..                .....++ ..+++..+++-..++.|+.++...
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~----------------~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVLNFHR----------------APIVSVK-WNKDGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCC----------------SCEEEEE-ECTTSSEEEEEETTCCEEEEETTT
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeeccCCC----------------ccEEEEE-ECCCCCEEEEEecCCeEEEEECCC
Confidence            655555678899998777  44443321                1123454 344554444444456666666653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=90.83  E-value=2.3  Score=42.68  Aligned_cols=113  Identities=10%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             cceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcc-cccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           76 VPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQY-SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~-~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ...++++.+ ++.++++...++.|..++...... .....+.+.                -..++.|+++++|. ++++-
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~v~~i~~~p~~~~~l~tg  296 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH----------------TAEVNCLSFNPYSEFILATG  296 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC----------------SSCEEEEEECSSCTTEEEEE
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC----------------CCCeEEEEeCCCCCCEEEEE
Confidence            357889988 677888888889999999764310 011122111                12467999999886 77776


Q ss_pred             CCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          153 TLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       153 ~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      ..++.|+.+|...    +.++.+..                .....+++ .+++ .++++-..+++|+.+++..
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~~h~----------------~~v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFESHK----------------DEIFQVQW-SPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEECCS----------------SCEEEEEE-CSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eCCCeEEEEeCCCCCCCeEEeecCC----------------CCEEEEEE-CCCCCCEEEEEeCCCcEEEEeCCC
Confidence            6788999998653    44443321                12345664 4555 6888888888999998864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.75  E-value=1.8  Score=43.40  Aligned_cols=112  Identities=11%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             ceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      =.+|++.+ +|+++++-...+.|...|..+..   ...+....    .         .-..-..++++++|+++++=..+
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~----~---------~~~~~~~~~~~~~~~~l~~g~~d  230 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---LRVFASSD----T---------INIWFCSLDVSASSRMVVTGDNV  230 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCE---EEEEECCS----S---------CSCCCCCEEEETTTTEEEEECSS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---eeEEeccC----C---------CCccEEEEEECCCCCEEEEEeCC
Confidence            36899986 78888887778889999876432   23333210    0         01123578999999977776677


Q ss_pred             CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|.++  +.++.+.                -..-..+++ .+++ .++++-..++.|+.+++..
T Consensus       231 g~i~~wd~~~~~~~~~~~h----------------~~~v~~v~~-~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          231 GNVILLNMDGKELWNLRMH----------------KKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SBEEEEESSSCBCCCSBCC----------------SSCEEEEEE-CTTCSSEEEEEETTSBCCEEETTT
T ss_pred             CcEeeeccCcceeEEEecc----------------cceEEeeee-cCCCceEEEEecCcceeeEEeccc
Confidence            8999999776  3332221                011245654 4444 4666666777888888764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.73  E-value=3.6  Score=40.24  Aligned_cols=114  Identities=7%  Similarity=-0.049  Sum_probs=68.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n  155 (486)
                      -..|++.++|+++++-..++.|..++.....  ....+-+.                -...+.|++.+++. ++++-..+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h----------------~~~v~~v~~s~~~~~~~~s~~~d  203 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--VLKSYNAH----------------SSEVNCVAACPGKDTIFLSCGED  203 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTCSSCEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCC----------------CCCEEEEEEccCCCceeeeeccC
Confidence            3678899999977777777888888876321  11111111                11356888988775 66666667


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|+.+|...   +..+....              .-..+..+++.+.++.++++-..++.|+.++....
T Consensus       204 g~v~~wd~~~~~~~~~~~~~~--------------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFCA--------------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCTT--------------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             CceEEEECCCCceeeeeeecc--------------ccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence            8888888643   21111100              01123456654445667766666778888887653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=90.72  E-value=2.4  Score=41.75  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       137 P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      -+.|+++++|+++++=..++.|+.+|...   +.++..+.               -..-+.|+ ..++|.++++-+..+.
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH---------------~~~V~~v~-fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH---------------SFAITEVT-ISPDSTYVASVSAANT  335 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS---------------SSCEEEEE-ECTTSCEEEEEETTSE
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc---------------cCCEEEEE-ECCCCCEEEEEeCCCe
Confidence            46789999999776655678899999755   44443221               11235677 5789999999999999


Q ss_pred             EEEEECCC
Q 011435          214 LRQISLNQ  221 (486)
Q Consensus       214 Ir~id~~G  221 (486)
                      |+++++..
T Consensus       336 vrvw~ip~  343 (365)
T 4h5i_A          336 IHIIKLPL  343 (365)
T ss_dssp             EEEEECCT
T ss_pred             EEEEEcCC
Confidence            99999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=90.58  E-value=10  Score=34.74  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....+++.++|.|+ +-..++.|..++.....  ....+.+.                -.....|+++++|.|+.+. .+
T Consensus       186 ~i~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~l~~~~-~d  245 (313)
T 3odt_A          186 VVRHLAVVDDGHFI-SCSNDGLIKLVDMHTGD--VLRTYEGH----------------ESFVYCIKLLPNGDIVSCG-ED  245 (313)
T ss_dssp             CEEEEEEEETTEEE-EEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECTTSCEEEEE-TT
T ss_pred             cEEEEEEcCCCeEE-EccCCCeEEEEECCchh--hhhhhhcC----------------CceEEEEEEecCCCEEEEe-cC
Confidence            35778888888844 44456789988876321  11222221                1245789999999776665 46


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +.|+.+|...   +.++.+..                .....++ ..+++.+++ -..++.|+.++....
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~----------------~~i~~~~-~~~~~~~~~-~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPA----------------ISIWSVD-CMSNGDIIV-GSSDNLVRIFSQEKS  297 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSS----------------SCEEEEE-ECTTSCEEE-EETTSCEEEEESCGG
T ss_pred             CEEEEEECCCCceeEEEeccC----------------ceEEEEE-EccCCCEEE-EeCCCcEEEEeCCCC
Confidence            8899998654   34443321                1134565 567777554 445678888888753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=90.51  E-value=3.1  Score=41.83  Aligned_cols=113  Identities=12%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccc--cEEEecccCCccccCCCCccccccCCcceEEEcCC---CCEEE
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSR--GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK---GNLYV  150 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~--~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d---G~LYV  150 (486)
                      .+.+|+++++|..+++-...+.|+.++........  ...+.       +         .......|+++++   |.+++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-------~---------h~~~v~~~~~sp~~~~~~~l~  214 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-------G---------HVSMLTDVHLIKDSDGHQFII  214 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-------E---------CSSCEEEEEEEECTTSCEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-------c---------ccCceEEEEEcCCCCCCcEEE
Confidence            46899999999855544457789888864321000  00001       1         1224678999998   86544


Q ss_pred             EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +=..++.|+.+|...   +.++..+.               -.....+++ . ++.++++-..++.|+.++...
T Consensus       215 s~~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~~~~-s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQCFIVDKWLFGH---------------KHFVSSICC-G-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEETTSCEEEEEESCTTCEEEECCCC---------------SSCEEEEEE-C-STTEEEEEESSSEEEEEETTT
T ss_pred             EEcCCCcEEEEECCCCceeeeeecCC---------------CCceEEEEE-C-CCCEEEEEeCCCeEEEEECCC
Confidence            444567888887543   33332110               012345654 4 666666666777888888764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.50  E-value=12  Score=36.63  Aligned_cols=139  Identities=11%  Similarity=0.057  Sum_probs=70.5

Q ss_pred             ceeEEEccCC-eEEEEECCCCEEEEEcCCCCccc--ccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           77 PYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYS--RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~--~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ...++++++| +++++-..++.|..++.......  ....+.+..    +.............-..|+++++|.++++-.
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  304 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRD  304 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEee
Confidence            5789999998 77777777888999987643210  023333210    0000000000111456899999999666555


Q ss_pred             CCCEEEEEcCC--C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          154 LNLAIRKIGDA--G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~--G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      . +.|+.+|..  +  +.++.+.........+ ......+.....++ ..++|..+++-..++.|+.++....
T Consensus       305 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          305 Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCS-LYENDCIFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             S-SEEEEEETTCCSSCSCCEESCGGGTTTHHH-HHHTSGGGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             C-CeEEEEeCCCCccccceeeccccccccccc-cccccccccceEEE-ECCCCCEEEEeccCCEEEEEEcCCC
Confidence            5 899999864  3  4444432100000000 00000011112344 4556665566666677777776643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.46  E-value=12  Score=35.69  Aligned_cols=115  Identities=9%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCccccc-EEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRG-RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ...++++++|.++++-..++.|..+|.....  .. ..+.+      ++         -..-..|+++++|.+.++=.. 
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~~------~h---------~~~v~~l~fs~~g~~l~s~~~-  234 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPD--QASSRFPV------DE---------EAKIKEVKFADNGYWMVVECD-  234 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTT--SCCEECCC------CT---------TSCEEEEEECTTSSEEEEEES-
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCC--CCccEEec------cC---------CCCEEEEEEeCCCCEEEEEeC-
Confidence            5788999999988887778899999876432  11 11111      01         124578999999985444333 


Q ss_pred             CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCC
Q 011435          156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G  221 (486)
                      +.|+.+|...   +.++..       +.+.   ...+.. ..++ .+++|..+++-.+ ++.|+.++.+.
T Consensus       235 ~~v~iwd~~~~~~~~~~~~-------~~~~---~~~~~~-~~~~-~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          235 QTVVCFDLRKDVGTLAYPT-------YTIP---EFKTGT-VTYD-IDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SBEEEEETTSSTTCBSSCC-------CBC--------CC-EEEE-ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CeEEEEEcCCCCcceeecc-------cccc---cccccc-eEEE-ECCCCCEEEEecCCCCcEEEEEEcc
Confidence            3899998654   222211       0000   000111 2365 5777776666444 77788887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.37  E-value=13  Score=36.45  Aligned_cols=111  Identities=9%  Similarity=0.030  Sum_probs=69.8

Q ss_pred             cceeEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEE-
Q 011435           76 VPYKIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA-  151 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA-  151 (486)
                      ....+++.++|. ++++..  .++.|..++.....  ....+..                 -.....++++++|..+++ 
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--RVNTVDA-----------------GSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--EEEEEEC-----------------SSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--EEEEEeC-----------------CCcEEEEEECCCCCeEEEE
Confidence            357889988764 777644  57889989876432  1111111                 013678999999986655 


Q ss_pred             -eCCCCEEEEEcCCC--ceE---EcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          152 -DTLNLAIRKIGDAG--VTT---IAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       152 -D~~n~rIrkid~~G--v~t---iaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                       -..++.|+.++...  ...   +.+.                -.....++ ..++|.++++-..++.|+.++....
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h----------------~~~v~~~~-~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPAH----------------DTRVLYSA-LSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEECC----------------SSCCCEEE-ECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             eecCCCcEEEEecCCccceeEEEecCC----------------CCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCC
Confidence             33578888887544  221   2121                11245666 5778888888888889999988753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=90.36  E-value=3.5  Score=41.27  Aligned_cols=120  Identities=12%  Similarity=0.018  Sum_probs=73.0

Q ss_pred             cceeEEEccC-CeEEEEECCCCEEEEEcCCCCc--------ccccEEEecccCCccccCCCCccccccCCcceEEEcCCC
Q 011435           76 VPYKIRVSED-GELFAVDEVNSNIVKITPPLSQ--------YSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        76 ~P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~--------~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      .+..|++.++ ++++++-..++.|..++.....        ......+.+.                -....+|++++++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~l~~~~~~  193 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----------------QKEGYGLSWNPNL  193 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----------------SSCCCCEEECTTS
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----------------CCCeEEEEeCCCC
Confidence            4788999997 6788777778888888865210        0111122221                1246789999988


Q ss_pred             C-EEEEeCCCCEEEEEcCCC---c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          147 N-LYVADTLNLAIRKIGDAG---V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       147 ~-LYVAD~~n~rIrkid~~G---v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      . ++++-..++.|+.++...   . ..+....    .+      ...-....++++...++.++++...++.|+.++...
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~------~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKN----IF------TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSE----EE------CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccce----ee------cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            7 777767778888888654   1 1110000    00      000112456765444778888888889999999874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=90.24  E-value=1.3  Score=46.15  Aligned_cols=116  Identities=10%  Similarity=-0.036  Sum_probs=66.5

Q ss_pred             eeEEEccCCeEEE-E-E-CCC-CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           78 YKIRVSEDGELFA-V-D-EVN-SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        78 ~GlAVd~dG~LYV-a-D-~~n-~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..+++++||+.++ + + ..+ ..|++++.+++   ..+.+.+.    .+            ....+++++||. |+.++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g---~~~~l~~~----~~------------~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG---GLRVFDSG----EG------------SFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC---CCEEECCS----SC------------EEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC---CceEeecC----CC------------ccccceECCCCCEEEEcc
Confidence            6788999998444 2 2 222 56899997653   24444432    11            236899999998 66555


Q ss_pred             CCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      ..+ .+|+++|.++  .. +..+..   +......    -..+...+ .+++|.||++-..+++++.++. |.
T Consensus       214 ~~~~~~i~~~d~~~~~~~-~~~~~~---~~~~~~~----~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~-g~  276 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE-DLELPS---KDFSSYR----PTAITWLG-YLPDGRLAVVARREGRSAVFID-GE  276 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE-ECCCSC---SHHHHHC----CSEEEEEE-ECTTSCEEEEEEETTEEEEEET-TE
T ss_pred             CCCeeEEEEEcCCCCcEE-EccCCC---cChhhhh----hcccccee-EcCCCcEEEEEEcCCcEEEEEE-CC
Confidence            433 3899999876  33 322110   0000000    00011222 4677788888877788888887 54

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=90.19  E-value=3.5  Score=43.52  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             ceeEEEccCCe-EEEEECC-------CCEEEEEcCCC-CcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           77 PYKIRVSEDGE-LFAVDEV-------NSNIVKITPPL-SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~-------n~rI~kid~~g-~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      ..++++++||+ |+++...       ...|+.++.++ +.......+....               -.....+++++||.
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------~~~~~~~~~spdg~  254 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------EEAIAQAEWAPDGS  254 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---------------TBCEEEEEECTTSC
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---------------CceEcceEECCCCe
Confidence            35678999997 6555432       24788888762 2111233333210               11456889999999


Q ss_pred             EEEEeCCCC--EEEEEcCCC
Q 011435          148 LYVADTLNL--AIRKIGDAG  165 (486)
Q Consensus       148 LYVAD~~n~--rIrkid~~G  165 (486)
                      ||++-..++  +|++++.++
T Consensus       255 l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTT
T ss_pred             EEEEECCCCCeEEEEEECCC
Confidence            766654444  899998744

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=90.17  E-value=9.9  Score=35.38  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=68.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|+++++|+++++-..++.|..++.....  ....+.+.                 .....+++.+++.+.++- .++
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~-~d~  277 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGG-----------------DIINALCFSPNRYWLCAA-TGP  277 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECS-----------------SCEEEEEECSSSSEEEEE-ETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCc--eeeeecCC-----------------ceEEeeecCCCCceeecc-CCC
Confidence            4688999999988877778899998876421  11111111                 124577888887766554 357


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .|+.+|..+   +..+.....   ..    .....-..-..++ ..++|+++++-..++.|+.+++.
T Consensus       278 ~i~iwd~~~~~~~~~~~~~~~---~~----~~~~h~~~v~~l~-~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          278 SIKIWDLEGKIIVDELKQEVI---ST----SSKAEPPQCTSLA-WSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEEETTTTEEEEEECCC--------------CCCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEEECCCCeEEEeccccce---ee----eccCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEeCC
Confidence            888888766   233322100   00    0000111224565 57788877777777888888765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=89.99  E-value=2.3  Score=40.48  Aligned_cols=123  Identities=11%  Similarity=0.056  Sum_probs=67.8

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccc--cCCCCc---cccccCCcceEEEcCCCCEEE
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTG--HVDGKP---NEARFNHPKGVTMDDKGNLYV  150 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G--~~dG~~---~~a~Ln~P~GIavD~dG~LYV  150 (486)
                      ....+++.++|+++++-..++.|..++..........   .  ....+  ...+..   ....-.....|+++++|++++
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP---A--PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC---C--CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccc---c--ccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            3578899999987777667778888885311000000   0  00000  000000   001112457899999998666


Q ss_pred             EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +=..++.|+.+|...   +.++.+..                .....++ ..+++.++++- .++.|+.++...
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~----------------~~v~~~~-~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASET----------------LPLLAVT-FITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSS----------------CCEEEEE-EEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCC----------------CCeEEEE-EecCCCEEEEE-eCCeEEEEEccC
Confidence            655678999998653   44443321                1134565 45567666665 667777777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=89.76  E-value=14  Score=35.19  Aligned_cols=110  Identities=9%  Similarity=0.057  Sum_probs=66.1

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC------CCCEEE
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD------KGNLYV  150 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~------dG~LYV  150 (486)
                      -..++++++|.++++-...+.|..++..+..   ...+.+.    .            ..-..+++.+      ++.+++
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~---~~~~~~h----~------------~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LATLLGH----N------------DWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTSCE---EEEECCC----S------------SCEEEEEECCC------CCEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEecc----C------------CcEEEEEEccCCCCCCCccEEE
Confidence            4678898999888887778888888876421   2222221    0            0123445544      344555


Q ss_pred             EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +-..++.|+..|...   ...+.+..                ..-..++ ..++|.++++-..++.|+.++....
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~----------------~~v~~~~-~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHN----------------SNINTLT-ASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCC----------------SCEEEEE-ECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEeCCCEEEEEECCcchhheeecCCC----------------CcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Confidence            555677888888665   23333210                1123455 5677777777777788888887754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.71  E-value=5.9  Score=38.67  Aligned_cols=114  Identities=6%  Similarity=-0.029  Sum_probs=64.2

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|++.++|.++++.. .+.|...+..............     .++         -..-..|++.++|+++++=..++
T Consensus        97 V~~~~~s~d~~~l~~s~-dg~v~lWd~~~~~~~~~~~~~~-----~~h---------~~~V~~v~~spdg~~l~sgs~dg  161 (357)
T 4g56_B           97 VTDVAWVSEKGILVASD-SGAVELWEILEKESLLVNKFAK-----YEH---------DDIVKTLSVFSDGTQAVSGGKDF  161 (357)
T ss_dssp             EEEEEEETTTEEEEEET-TSCEEEC--------CCCCEEE-----CCC---------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEC-CCEEEEeeccccceeEEEeecc-----CCC---------CCCEEEEEECCCCCEEEEEeCCC
Confidence            35788999998887754 5677777754221000000000     011         11346899999999766655678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.+|...   +..+.+..                .....+++...+..++++-..++.|+.++...
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~----------------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHS----------------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCS----------------SCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             eEEEEECCCCcEEEEEcCCC----------------CCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            899998765   34443210                11345654333345777777778888888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.67  E-value=11  Score=40.40  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=65.5

Q ss_pred             ceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEeC
Q 011435           77 PYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD~  153 (486)
                      ...+++++ +|+++++-..++.|..++.....  ....+.+.               .-.....+++.+  +|.++++-.
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--PNFTLTTG---------------QERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSS--CSEEEECC---------------CTTCCCEEEECCSTTCCEEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeEEecC---------------CCCCEEEEEEEECCCCCEEEEEe
Confidence            47788888 78777777777888888875332  11222211               012356788888  888777767


Q ss_pred             CCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          154 LNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       154 ~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .++.|+.+|...   +.++.+..                .....++ ..++|.++++-..++.|+.++...
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~~~----------------~~v~~~~-~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEGHM----------------SNVSFAV-FHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCS----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEECCCCcEEEEEcCCC----------------CCEEEEE-EcCCCCEEEEEeCCCeEEEEECCC
Confidence            788999998654   44443321                1122343 345555555555555666666553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=89.58  E-value=4.1  Score=37.54  Aligned_cols=112  Identities=9%  Similarity=0.022  Sum_probs=65.1

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcc--cccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEe
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQY--SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVAD  152 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~--~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD  152 (486)
                      -..|+++++|+++++-..++.|..++......  .....+.+.                -.....|++.+  +|+++++=
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----------------DSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----------------SSCEEEEEECCGGGCSEEEEE
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----------------CCcEEEEEEcCCCCCCEEEEE
Confidence            47889999999777767778888887653210  001111121                11356888887  57766655


Q ss_pred             CCCCEEEEEcCCC------------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC--CeEEEEeCCCCeEEEEE
Q 011435          153 TLNLAIRKIGDAG------------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT--CSLLVIDRGNAALRQIS  218 (486)
Q Consensus       153 ~~n~rIrkid~~G------------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gn~rIr~id  218 (486)
                      ..++.|+.+|...            +..+.+.                -.....++ ..++  +.++++-..++.|+.++
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS----------------KGSLYSVK-FAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCC----------------SSCEEEEE-ECCGGGCSEEEEEETTCEEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeeccc----------------CCceeEEE-EcCCCCCcEEEEecCCCcEEEec
Confidence            5567777777543            1122111                01134555 4555  66666666677888888


Q ss_pred             CCC
Q 011435          219 LNQ  221 (486)
Q Consensus       219 ~~G  221 (486)
                      ...
T Consensus       141 ~~~  143 (351)
T 3f3f_A          141 ALE  143 (351)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=89.40  E-value=2.3  Score=41.30  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|+++++|.++++-..++.|...+..+... .......     .|+         -..-..|+++++|+++++=..++
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~-----~~h---------~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLS-----EGH---------QRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEEC-----SSC---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeec-----ccc---------CCcEEEEEECCCCCEEEEEECCC
Confidence            36789999999888777778888887653210 0011111     111         11346899999999666555556


Q ss_pred             EEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+..+.+.     +.++.+..                ..-..++ ..++|+++++-..++.|+.++...
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~----------------~~v~~v~-~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHE----------------NEVKSVA-WAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCS----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEEECT
T ss_pred             cEEEEEccCCCeEEEEEccCCC----------------CCceEEE-EeCCCCEEEEEECCCeEEEEECCC
Confidence            666665332     23333210                1124565 466777777777777888887754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.31  E-value=16  Score=35.67  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=41.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC--C
Q 011435          136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR--G  210 (486)
Q Consensus       136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~--g  210 (486)
                      ...+++++++|+++++-..++.|+.+|...   +.++.+..                .....+++...+..|+++-.  .
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~----------------~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN----------------AAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS----------------SCCCEEEECTTSTTEEEEECCTT
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc----------------ceEEEEEECCCCCCEEEEecCCC
Confidence            457899999998666655678899998765   33443221                11234553333345555543  4


Q ss_pred             CCeEEEEECCC
Q 011435          211 NAALRQISLNQ  221 (486)
Q Consensus       211 n~rIr~id~~G  221 (486)
                      ++.|+.++...
T Consensus       283 d~~i~i~d~~~  293 (401)
T 4aez_A          283 DKQIHFWNAAT  293 (401)
T ss_dssp             TCEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            56666666654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=89.04  E-value=5.3  Score=38.88  Aligned_cols=107  Identities=7%  Similarity=0.114  Sum_probs=66.4

Q ss_pred             EEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEE
Q 011435           81 RVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRK  160 (486)
Q Consensus        81 AVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrk  160 (486)
                      ++.++|+++++-..++.|..++.....   ......      +         .-.....|+++++|+++++=..++.|+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~------~---------h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNL---QREIDQ------A---------HVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCE---EEEETT------S---------SSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcc---eeeecc------c---------ccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            556788877776677788888876321   111110      1         1124578999999986666566788999


Q ss_pred             EcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          161 IGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       161 id~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      +|...   +.++.+..                .....++ ..+++.++++-..++.|+.++....
T Consensus       166 wd~~~~~~~~~~~~h~----------------~~v~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          166 WSVKDGSNPRTLIGHR----------------ATVTDIA-IIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EETTTCCCCEEEECCS----------------SCEEEEE-EETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EeCCCCcCceEEcCCC----------------CcEEEEE-EcCCCCEEEEEcCCCcEEEeECCCC
Confidence            98654   45553321                1134565 3556666666666777888887643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=88.76  E-value=17  Score=34.79  Aligned_cols=111  Identities=10%  Similarity=0.027  Sum_probs=65.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC----------
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG----------  146 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG----------  146 (486)
                      -..++++++|+.+++-...+.|..++..+.    .......   ..++         -..-..+++++++          
T Consensus       121 v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~---~~~~---------~~~v~~~~~~~~~~~~~~~~~~~  184 (343)
T 2xzm_R          121 VYSVAFSPDNRQILSAGAEREIKLWNILGE----CKFSSAE---KENH---------SDWVSCVRYSPIMKSANKVQPFA  184 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSCEEEEESSSC----EEEECCT---TTSC---------SSCEEEEEECCCCCSCSCCCSSC
T ss_pred             EEEEEECCCCCEEEEEcCCCEEEEEeccCC----ceeeeec---ccCC---------CceeeeeeeccccccccccCCCC
Confidence            467889999887776666778888886521    1111110   0010         0112355555554          


Q ss_pred             CEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          147 NLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       147 ~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .++++=..++.|+.+|..+  ..++.+..                .....++ ..++|.++++-..++.|+.++..
T Consensus       185 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~----------------~~v~~~~-~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          185 PYFASVGWDGRLKVWNTNFQIRYTFKAHE----------------SNVNHLS-ISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CEEEEEETTSEEEEEETTTEEEEEEECCS----------------SCEEEEE-ECTTSSEEEEEETTCEEEEEESS
T ss_pred             CEEEEEcCCCEEEEEcCCCceeEEEcCcc----------------ccceEEE-ECCCCCEEEEEcCCCeEEEEECC
Confidence            5555555678888888665  33333210                1134565 57788877777788889999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=88.48  E-value=16  Score=33.98  Aligned_cols=76  Identities=9%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             ceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      =.+|+++|+ |+++++-...+.|...+....... ........   .|+         -.....++++++|++.++=..+
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-~~~~~~~l---~~h---------~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-YGIPQRAL---RGH---------SHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-SEEEEEEE---CCC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-cceeeEEE---eCC---------CCCEEEEEECCCCCEEEEEccc
Confidence            478999986 678887777777877775432110 11111110   011         1245689999999966665567


Q ss_pred             CEEEEEcCCC
Q 011435          156 LAIRKIGDAG  165 (486)
Q Consensus       156 ~rIrkid~~G  165 (486)
                      +.|+..+...
T Consensus       108 ~~i~~~~~~~  117 (340)
T 4aow_A          108 GTLRLWDLTT  117 (340)
T ss_dssp             SEEEEEETTT
T ss_pred             ccceEEeecc
Confidence            8888887665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=88.37  E-value=8.7  Score=41.03  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC--CEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG--NLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG--~LYVAD~~  154 (486)
                      -.+++++++|+.+++-...+.|...+..+..   ...+..   ...++         -..-..+++++++  .++++-..
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~---~~~~h---------~~~v~~~~~~~~~~~~~l~s~s~  539 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---KYTISE---GGEGH---------RDWVSCVRFSPNTLQPTIVSASW  539 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECS---STTSC---------SSCEEEEEECSCSSSCEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---ceeecc---CCCCC---------CCcEEEEEEeCCCCcceEEEEeC
Confidence            3577888888876766667778887764321   111111   01111         1124578888876  45565556


Q ss_pred             CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435          155 NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC  224 (486)
Q Consensus       155 n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~  224 (486)
                      ++.|+.+|...   +.++.+..                .....++ ..++|+++++-..++.|+.++.....+
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~----------------~~v~~v~-~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHT----------------GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCS----------------SCEEEEE-ECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCC----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            77888888655   34443320                1124565 577888888888888899998875433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.93  E-value=18  Score=34.58  Aligned_cols=111  Identities=8%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             ceeEEEcc--CCeEEEEECCCCEEEEEcCCCCcccccEEEe-cccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           77 PYKIRVSE--DGELFAVDEVNSNIVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~--dG~LYVaD~~n~rI~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      -..+++++  +|+++++-..++.|..+|.....   ...+. +.               .-.....++++++|.++++=.
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~---------------~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS---QYIVHSAK---------------SDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSC---EEEEECCC---------------SSCCCCEEEECTTSCEEEEEC
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEEecC---------------CCCceEEEEECCCCCEEEEEc
Confidence            47788889  89988877778889999876432   21111 11               011356899999999888766


Q ss_pred             CCCEEEEEcCCC---c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          154 LNLAIRKIGDAG---V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~G---v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .++.|+.+|...   + .++.++.               -.....++ ..++|..+++-..+ .|+.+++...
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~l~-fs~~g~~l~s~~~~-~v~iwd~~~~  245 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDE---------------EAKIKEVK-FADNGYWMVVECDQ-TVVCFDLRKD  245 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCT---------------TSCEEEEE-ECTTSSEEEEEESS-BEEEEETTSS
T ss_pred             CCCEEEEEECCCCCCCccEEeccC---------------CCCEEEEE-EeCCCCEEEEEeCC-eEEEEEcCCC
Confidence            778999998654   2 3443210               01234666 45666555554444 8999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=87.84  E-value=9.9  Score=38.00  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=68.4

Q ss_pred             ceeEEEccCCeE-EEEECCCCEEEEEcCC--CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           77 PYKIRVSEDGEL-FAVDEVNSNIVKITPP--LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        77 P~GlAVd~dG~L-YVaD~~n~rI~kid~~--g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..+++++++|.. +++-..++.|..++..  +..  ....+.+.     +         .-..+..|+++++|+ |++++
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~-----~---------~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRF-----C---------FSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEE-----E---------CSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecc-----c---------CCCCceEEEEcCCCCEEEEEe
Confidence            578999999985 5776667888888765  321  12222211     0         012468999999998 56665


Q ss_pred             CCCCEEEEEcCCC---ce----EEcCCCCCCCCcCCCCccccccCCCceeEEEcCC---CeEEEEeCCCCeEEEEECCCC
Q 011435          153 TLNLAIRKIGDAG---VT----TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT---CSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n~rIrkid~~G---v~----tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~---G~LYVaD~gn~rIr~id~~G~  222 (486)
                      . .+.|+.++...   ..    ++.+                .-.....+++ .++   +.++++-..++.|+.++....
T Consensus       169 ~-~g~v~~~~~~~~~~~~~~~~~~~~----------------h~~~v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          169 K-FGDVYSIDINSIPEEKFTQEPILG----------------HVSMLTDVHL-IKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             T-TSEEEEEETTSCCCSSCCCCCSEE----------------CSSCEEEEEE-EECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             C-CCcEEEEecCCcccccccceeeec----------------ccCceEEEEE-cCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            4 67888887543   11    1111                1122456664 455   666666666788888887643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=87.81  E-value=7.9  Score=41.09  Aligned_cols=116  Identities=9%  Similarity=0.044  Sum_probs=63.9

Q ss_pred             cceeEEEccCCe-EEEEECCC----CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC--CCC-
Q 011435           76 VPYKIRVSEDGE-LFAVDEVN----SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGN-  147 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n----~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~-  147 (486)
                      .+..+++++||+ |+++....    ..|+.++..+..  ....+...  ...+         ..+....+++++  +|. 
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~--~~~~---------~~~~~~~~~~sp~~dg~~  325 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVE--TDKH---------YVEPLHPLTFLPGSNNQF  325 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEE--ECSS---------CCCCCSCCEECTTCSSEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEc--cCCC---------eECccCCceeecCCCCEE
Confidence            357899999998 66644322    378889887531  22333221  0000         111235789998  888 


Q ss_pred             EEEEeCC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCce-eEEEcCCC-eEEEEeCCCC----eEEEEE
Q 011435          148 LYVADTL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFD-VVYVRPTC-SLLVIDRGNA----ALRQIS  218 (486)
Q Consensus       148 LYVAD~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~g-Ia~vd~~G-~LYVaD~gn~----rIr~id  218 (486)
                      ||+++.. ..+|+.++.++  +..+.++..                .-.. ++ .+++| .||++...++    +|++++
T Consensus       326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~----------------~v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEW----------------EVTNFAG-FDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             EEEECTTSSCEEEEEETTSCEEEECCCSSS----------------CEEEEEE-ECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             EEEEccCCccEEEEEECCCCEEEecCCCCe----------------EEEeeeE-EcCCCCEEEEEecCCCCceEEEEEEE
Confidence            4555443 35788888655  445433210                0112 33 44554 5777665544    777777


Q ss_pred             CCC
Q 011435          219 LNQ  221 (486)
Q Consensus       219 ~~G  221 (486)
                      .++
T Consensus       389 ~~~  391 (706)
T 2z3z_A          389 IKG  391 (706)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=87.70  E-value=19  Score=34.11  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=68.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..+++.++|.++++-...+.|...|.....  ....+.|.                -..-..|+++++|.++++=..++
T Consensus        68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~s~D~  129 (319)
T 3frx_A           68 VQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGH----------------KSDVMSVDIDKKASMIISGSRDK  129 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECC----------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCC--eeEEEccC----------------CCcEEEEEEcCCCCEEEEEeCCC
Confidence            3678899999988877778899999976432  12233332                11346889999999777766778


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEE-----cCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV-----RPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v-----d~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+..|..+  +.++.+...                .-..+.+.     +.++.++++-..++.|+.+++..
T Consensus       130 ~i~vwd~~~~~~~~~~~h~~----------------~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          130 TIKVWTIKGQCLATLLGHND----------------WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             CEEEEETTSCEEEEECCCSS----------------CEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             eEEEEECCCCeEEEEeccCC----------------cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence            899998877  455543210                01122211     12344556666667777777764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=87.26  E-value=15  Score=35.68  Aligned_cols=125  Identities=10%  Similarity=-0.010  Sum_probs=71.6

Q ss_pred             ceeEEEccCCeEEEEECCCCE-EEEEcCCCCcccccEEEe-cccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSN-IVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~r-I~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      -..|++++||.++++-...+. |..+|.....  ....+. |.      +         -..-..|+++++|+++++=..
T Consensus       198 v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~------h---------~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGL------D---------RADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             EEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTT------C---------CSCEEEEEECTTSCEEEEEET
T ss_pred             eEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC------C---------CCcEEEEEECCCCCEEEEEEC
Confidence            478999999998888777887 8888876322  122222 20      0         113568999999997777667


Q ss_pred             CCEEEEEcCCC-----ceEEcCCCCCCCCcCCCCc--cccccC----CCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          155 NLAIRKIGDAG-----VTTIAGGKSNVAGFRDGPS--EDAKFS----NDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       155 n~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~--~~a~f~----~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      ++.|+.+|...     ...+.+-  ....+.+...  ....+.    .+..++...++|+.+++-..++++++++..
T Consensus       261 d~~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          261 KWTLHVFEIFNDQDNKRHALKGW--INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             TCEEEEEESSCCSCCCSEETTTT--EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEEccCCCCcccccccce--eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            78898888543     1111110  0000100000  000011    111333467888777777778888887754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=87.24  E-value=3.1  Score=39.06  Aligned_cols=113  Identities=7%  Similarity=-0.026  Sum_probs=67.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCccc-ccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYS-RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~-~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~  154 (486)
                      -.+++++++|.++++-..++.|..++.+..... ......+.                -.....++++++|+ ++++=..
T Consensus        14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~~~   77 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY----------------KHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC----------------SSCEEEEEEEESSSEEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec----------------CCceEEEEECCCCCcEEEEEcC
Confidence            477889899886666666778888776532100 01222221                11457899999999 5555445


Q ss_pred             CCEEEEEcC-CC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGD-AG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~-~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++.|+.++. .+  ...+.+..     .         -.....+++..  +.++++-..++.|+.++...
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~-----~---------~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNE-----A---------NLGICRICKYG--DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCC-----C---------CSCEEEEEEET--TTEEEEEETTSEEEEECHHH
T ss_pred             CCeEEEEEeccCCceEeccccC-----C---------CCceEEEEeCC--CCEEEEEcCCCeEEEEcccc
Confidence            788999987 65  33332200     0         01234566444  66666666778888888653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=87.21  E-value=7.3  Score=41.11  Aligned_cols=117  Identities=13%  Similarity=0.030  Sum_probs=73.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....+++++||.++++-..++.|..++..+........ .+.                -...+.|+++++|.+.++-..+
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h----------------~~~v~~v~fspdg~~las~s~d  512 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVH----------------PAEITSVAFSNNGAFLVATDQS  512 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCC----------------CCceEEEEECCCCCEEEEEcCC
Confidence            46789999999988887788888888865321000111 111                1135789999999976666667


Q ss_pred             CEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.++... ...+...   ..+        ..-..-..++ ..++|.++++-...+.|+..+.+.
T Consensus       513 ~~v~~w~~~~~~~~~~~~---~~~--------~H~~~V~~v~-fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          513 RKVIPYSVANNFELAHTN---SWT--------FHTAKVACVS-WSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             SCEEEEEGGGTTEESCCC---CCC--------CCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CCEEEEEcCCCCceeeee---eee--------ecccceeEEE-ECCCCCEEEEEECCCcEEEEECCC
Confidence            8888887543 1111100   000        0011234676 578888888888888999999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.98  E-value=15  Score=38.60  Aligned_cols=84  Identities=10%  Similarity=0.080  Sum_probs=48.4

Q ss_pred             cceeEEEccCCeEEEEECCCC--EEEEEcCCCCcccccEEEecccCCccccCCCCccccccC-CcceEEEcCCCCEEEEe
Q 011435           76 VPYKIRVSEDGELFAVDEVNS--NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN-HPKGVTMDDKGNLYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~--rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln-~P~GIavD~dG~LYVAD  152 (486)
                      ....+++++||+||++...++  +|++++.+++   ....+...   ...     .....+. ....+++.++|.++++-
T Consensus       243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~---~~~-----~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---AATQLCRR---EEE-----FAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             CEEEEEECTTSCEEEEECTTSSCEEEEECTTTC---CEEESSCC---SSB-----SSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             eEcceEECCCCeEEEEECCCCCeEEEEEECCCC---ceeecccc---ccc-----ccCccccccCceEeEeCCCEEEEEE
Confidence            367889999999777665555  8999987543   22222221   000     0000010 13468888888866554


Q ss_pred             C-CCCEEEEEcCCC--ceEEc
Q 011435          153 T-LNLAIRKIGDAG--VTTIA  170 (486)
Q Consensus       153 ~-~n~rIrkid~~G--v~tia  170 (486)
                      . +..+|+.+|.++  +.++.
T Consensus       312 ~~~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          312 GKGAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             BSSSCEEEEEETTTTEEEECC
T ss_pred             EcCccEEEEEECCCCcEEEec
Confidence            3 455778888764  55543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=86.80  E-value=4.5  Score=38.29  Aligned_cols=112  Identities=10%  Similarity=0.028  Sum_probs=60.0

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC--CCEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK--GNLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d--G~LYVAD~~  154 (486)
                      -..++++++|.++++-..++.|..++.+.........+.+.                -..-..|++.++  |+++++=..
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----------------EGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECCGGGCSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC----------------CCcEEEEEeCCCCCCCEEEEecc
Confidence            47788999998777666677788877642110111112221                112357788755  775554445


Q ss_pred             CCEEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC--CeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT--CSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++.|+.+|...     +..+.+.                -.....++ ..++  +.++++-..++.|+.++...
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVH----------------SASVNSVQ-WAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCC----------------SSCEEEEE-ECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEEcCCCceeEeeeecCC----------------CcceEEEE-eCCCCCCCEEEEecCCCcEEEEecCC
Confidence            67777776543     1222111                01123454 3444  55555555666777777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=86.57  E-value=21  Score=33.34  Aligned_cols=75  Identities=8%  Similarity=0.033  Sum_probs=50.0

Q ss_pred             cceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .-.++++.+ +|+++++-..++.|..++....   .........   .+         .-.....|+++++|+++++=..
T Consensus       117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~---~~---------~~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTD---TLVAIFGGV---EG---------HRDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTT---EEEEEECST---TS---------CSSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEEeecC---eEEEEeccc---cc---------ccCceeEEEECCCCCEEEEecC
Confidence            357899998 8887777777788999987632   122222110   01         1124678999999986666556


Q ss_pred             CCEEEEEcCCC
Q 011435          155 NLAIRKIGDAG  165 (486)
Q Consensus       155 n~rIrkid~~G  165 (486)
                      ++.|+.+|...
T Consensus       182 dg~i~i~d~~~  192 (366)
T 3k26_A          182 DHSLKLWRINS  192 (366)
T ss_dssp             TSCEEEEESCS
T ss_pred             CCCEEEEECCC
Confidence            78899998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=86.48  E-value=23  Score=37.74  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.+++++++|+++++-...+.|+.++.....  ....+.|.                -..-..|+++++|+.+++=..++
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~s~D~  494 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGV--STRRFVGH----------------TKDVLSVAFSLDNRQIVSASRDR  494 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECC----------------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ceeEEeCC----------------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            4678999999988887788899999976432  12223332                11346889999998666666678


Q ss_pred             EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC--eEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC--SLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G--~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+..|..+  ..++.....   ++.         ..-..++ ..+++  .++++-..++.|+.+++...
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~---~h~---------~~v~~~~-~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGE---GHR---------DWVSCVR-FSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTT---SCS---------SCEEEEE-ECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEECCCCcceeeccCCC---CCC---------CcEEEEE-EeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            899998766  233322111   110         1122344 23333  45555556677777777643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.44  E-value=25  Score=35.71  Aligned_cols=114  Identities=11%  Similarity=-0.005  Sum_probs=66.5

Q ss_pred             cceeEEEccCCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VPYKIRVSEDGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .+..+++.  |.++++-.. ++.|..++....     ........   +         .-.....|+++++|.++++=..
T Consensus       448 ~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~-----~~~~~~~~---~---------~~~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          448 PGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL-----EVSFDLKT---P---------LRAKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             CEEEEEEC--SSEEEEEETTTSCEEEEETTEE-----EEEEECSS---C---------CSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEc--CCEEEEeecCCCeEEEEECCCc-----cccccccC---C---------ccCceEEEEECCCCCEEEEcCC
Confidence            46778887  554444444 677888887531     11111110   1         1224678999999996666656


Q ss_pred             CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC----------CCeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP----------TCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~----------~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++.|+.++...-..+..-.    +.        .-.....++ ..+          ++.++++-..++.|+.++...
T Consensus       509 dg~i~iw~~~~~~~~~~~~----~~--------h~~~v~~~~-~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  572 (615)
T 1pgu_A          509 MGKILLYDLQSREVKTSRW----AF--------RTSKINAIS-WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  572 (615)
T ss_dssp             TSCEEEEETTTTEEEECCS----CC--------CSSCEEEEE-ECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             CCeEEEeeCCCCcceeEee----cC--------CCCceeEEE-EcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence            7889999875522221100    00        011234565 455          777777777778899998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=86.00  E-value=24  Score=33.50  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=48.5

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      -.++++.++|. ++++-..++.|..++..... .....+... .+......-......-.....|+++++|+.+++-..+
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQH-NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTT-TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-ccccccccc-ccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            46788999887 67666677788888875322 011111110 0000000000001122345789999999866655567


Q ss_pred             CEEEEEcCCC
Q 011435          156 LAIRKIGDAG  165 (486)
Q Consensus       156 ~rIrkid~~G  165 (486)
                      +.|+.+|...
T Consensus       267 g~i~vwd~~~  276 (408)
T 4a11_B          267 NRMRLWNSSN  276 (408)
T ss_dssp             SCEEEEETTT
T ss_pred             CeEEEEECCC
Confidence            8899888654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=85.91  E-value=2.9  Score=40.33  Aligned_cols=125  Identities=15%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             eeEEEccCCe-E-EEEECCCC---EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           78 YKIRVSEDGE-L-FAVDEVNS---NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        78 ~GlAVd~dG~-L-YVaD~~n~---rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..+++++||+ | |+++....   .|++++.+++.   .+.+... .+..         .....+.++++.++|. |+++
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~-~~~~---------~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE---NRQLTSM-PACS---------HLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC---EEEEEEE-CCEE---------EEEECTTSSEEEEEECCC---
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCc---eEEEEcC-CCce---------eeeecCCCCeEccCCCcceeE
Confidence            3567889998 5 55554332   39999987543   2222211 1100         0112356667888887 4443


Q ss_pred             e--------CCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeC--CCCeEEEEE
Q 011435          152 D--------TLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR--GNAALRQIS  218 (486)
Q Consensus       152 D--------~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~--gn~rIr~id  218 (486)
                      -        ..+..|+++|.++  +..+..... ......+    .+......++ ..++| .|+++..  +...|++++
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~----~~~~~~~~~~-~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT-SWKVFEG----DRQVTHPHPS-FTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEECCC-CCCCBTT----BSSTTCCCCE-ECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEeccccC-ccccccc----ccccCCCCcc-CCCCCCEEEEEecCCCceeEEEEE
Confidence            1        4567899998776  444543211 0000000    0001133455 35555 5665543  345677777


Q ss_pred             CCC
Q 011435          219 LNQ  221 (486)
Q Consensus       219 ~~G  221 (486)
                      +..
T Consensus       382 l~~  384 (388)
T 3pe7_A          382 LPE  384 (388)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=85.70  E-value=12  Score=35.03  Aligned_cols=111  Identities=10%  Similarity=0.083  Sum_probs=64.4

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEeCCC
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVADTLN  155 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD~~n  155 (486)
                      ..++++++|+++++-..++.|..++.++.......++.|.    .+            .-..|++.+  +|+++++=..+
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~~------------~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH----EG------------PVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC----SS------------CEEEEEECCGGGCSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc----cC------------CeEEEEecCCCcCCEEEEEcCC
Confidence            6789999999888877788888888653211112233331    01            234677754  47776665667


Q ss_pred             CEEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC--CeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT--CSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+..|...     +.++.+..                ..-..+++ .++  |.++++-..++.|+.++...
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~----------------~~v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHS----------------ASVNSVQW-APHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCS----------------SCEEEEEE-CCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CEEEEEEcCCCceEEEEEeecCC----------------CceeEEEe-CcCCCCcEEEEEECCCcEEEEEecC
Confidence            8888887543     22222210                01234553 333  55666666677788887764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.34  E-value=9  Score=43.65  Aligned_cols=77  Identities=10%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -.++++++||.++++-..++.|..++.....  ....+.+.                -..-..|+++++|++.++=..++
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~~~d~  679 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAH----------------EDEVLCCAFSSDDSYIATCSADK  679 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccC----------------CCCEEEEEEecCCCEEEEEeCCC
Confidence            4788999999977776777889999876432  12222221                11356899999998666655678


Q ss_pred             EEEEEcCCC---ceEEcC
Q 011435          157 AIRKIGDAG---VTTIAG  171 (486)
Q Consensus       157 rIrkid~~G---v~tiaG  171 (486)
                      .|+.+|...   +.++.+
T Consensus       680 ~v~vwd~~~~~~~~~~~~  697 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDE  697 (1249)
T ss_dssp             EEEEEETTTCCEEEEEEC
T ss_pred             eEEEEECCCCceEEEEcC
Confidence            899998654   445443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=85.31  E-value=8.8  Score=37.01  Aligned_cols=122  Identities=10%  Similarity=0.049  Sum_probs=69.4

Q ss_pred             ceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccc---cEEEecccCCccccCCCCccccccCCcceEEEcCC-CCEEEE
Q 011435           77 PYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSR---GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYVA  151 (486)
Q Consensus        77 P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~---~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVA  151 (486)
                      -..++++++ ++++++-..++.|..++........   .....+..            ...-.....|+++++ +.++++
T Consensus       116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS------------MSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS------------CCSSCCCCEEEECSSCTTEEEE
T ss_pred             eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc------------cCCCCCeeEEEeCCCCCcEEEE
Confidence            467888887 6777776677788888775321000   00000000            011224578999998 677777


Q ss_pred             eCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCC---eEEEEECCC
Q 011435          152 DTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNA---ALRQISLNQ  221 (486)
Q Consensus       152 D~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~---rIr~id~~G  221 (486)
                      -..++.|+.+|...   +.++..... ..+         .-.....++ ..+++ .++++-..++   .|+.++...
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~---------~~~~v~~~~-~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSP-NSG---------IKQQLSVVE-WHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCC-SSC---------CCCCEEEEE-ECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EcCCCCEEEEECCCCCcceEEecccc-ccc---------cCCceEEEE-ECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            77788899998765   334432100 000         011245666 45554 5666666655   888888875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=84.55  E-value=23  Score=37.67  Aligned_cols=69  Identities=12%  Similarity=0.023  Sum_probs=43.7

Q ss_pred             ceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC
Q 011435           77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~  154 (486)
                      ...+++++||+ |+++..  +.|+.++.++........+.+.                -.....+++++||+ |+++.  
T Consensus       111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~~SPDG~~la~~~--  170 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG----------------EGFATDAKLSPKGGFVSFIR--  170 (741)
T ss_dssp             SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS----------------SSCEEEEEECTTSSEEEEEE--
T ss_pred             cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC----------------CcccccccCCCCCCEEEEEe--
Confidence            46889999998 555553  7899998875300011111110                11467899999998 55554  


Q ss_pred             CCEEEEEcCCC
Q 011435          155 NLAIRKIGDAG  165 (486)
Q Consensus       155 n~rIrkid~~G  165 (486)
                      ++.|+.+|.++
T Consensus       171 ~~~i~~~d~~~  181 (741)
T 2ecf_A          171 GRNLWVIDLAS  181 (741)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCcEEEEecCC
Confidence            35888888765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=84.42  E-value=33  Score=33.79  Aligned_cols=109  Identities=9%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+.+++-..++.|..++.....  ....+.+.                -.....++++  ++.+++=..++
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGE--LMYTLQGH----------------TALVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEEC--SSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCC----------------CCcEEEEEEc--CCEEEEEeCCC
Confidence            5688899999877777777889999875321  11122221                1123567776  45555545568


Q ss_pred             EEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          157 AIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       157 rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .|+.+|... ...+....                ..+..++...+++.++++-. ++.|+.++....
T Consensus       373 ~v~vwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSYHH----------------TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             EEEEEETTTCCEEEEEEC----------------TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             cEEEEECCCCceeeeecC----------------CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            888888765 22211110                01112223455565555554 578888887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=84.33  E-value=18  Score=35.60  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=60.4

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      =..|++.+||+++++-..++.|..++.....  ....+.+.    .              -.-.+++.++.+.++-...+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h----~--------------~~v~~~s~~~~~l~sgs~d~  209 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSH----S--------------ARVGSLSWNSYILSSGSRSG  209 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----S--------------SCEEEEEEETTEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCC----C--------------CceEEEeeCCCEEEEEeCCC
Confidence            3789999999988777778889888876432  12222221    0              11223344566666666677


Q ss_pred             EEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          157 AIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       157 rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      .|+..+...    +.++.+..                .....+. ..++|..+++-..++.|+.++..
T Consensus       210 ~i~~~d~~~~~~~~~~~~~h~----------------~~~~~~~-~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          210 HIHHHDVRVAEHHVATLSGHS----------------QEVCGLR-WAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEEEETTSSSCEEEEEECCS----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEESS
T ss_pred             ceeEeeecccceeeEEecccc----------------cceeeee-ecCCCCeeeeeeccccceEEeec
Confidence            787777544    34443321                1122333 45556655555556666666654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=84.22  E-value=3.2  Score=39.90  Aligned_cols=112  Identities=7%  Similarity=-0.068  Sum_probs=63.7

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCc-ccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQ-YSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~-~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      -..+++.++|+++++-..++.|..++..... ......+.+.                -.....++++++|+++++=..+
T Consensus        58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------------NRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC----------------SSCEEEEECCTTSSCCEEEESS
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------------CCceEEEEECCCCCEEEEEecC
Confidence            4789999999977766667788888875321 0011111111                1135688999988854444456


Q ss_pred             CEEEEEcCCC------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          156 LAIRKIGDAG------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       156 ~rIrkid~~G------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      +.|+.+|.+.      +..+.+..               -.....++ ..+++.++++-..++.|+.++..
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h---------------~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPL---------------RSTILSLD-WHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSC---------------CSCEEEEE-ECTTSSEEEEEESSSCEEEEEEC
T ss_pred             CeEEEEEECCcccceeeeEeeccc---------------CCCeEEEE-EcCCCCEEEEEeCCCEEEEEEEE
Confidence            7788877554      23332210               11234566 56677777777777888888875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=84.18  E-value=9.4  Score=40.68  Aligned_cols=82  Identities=13%  Similarity=0.012  Sum_probs=46.0

Q ss_pred             cceeEEEccCCe-EEEEECCCC-----EEEEEcCCCCcccccEEEecccCCccccCCCCc-------c--cccc---CCc
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNS-----NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKP-------N--EARF---NHP  137 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~-----rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~-------~--~a~L---n~P  137 (486)
                      .+..+++++||+ |+++....+     .|+.++.++..   ...+.... +  ...+|..       .  ..++   ...
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~---~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TRLLVDSK-V--VLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC---EEEEECGG-G--TC--------------------CCEES
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc---eeEccchh-h--cccccccccchhhhhhhhhhhccccCc
Confidence            478899999998 666554234     79999887542   22222210 0  0000000       0  0000   124


Q ss_pred             ceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435          138 KGVTMDDKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       138 ~GIavD~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                      ..+++++||+ |+++..  +.|+.+|.++
T Consensus       112 ~~~~~SpDg~~l~~~~~--~~i~~~d~~~  138 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG--GELYLYDLKQ  138 (741)
T ss_dssp             CCCEECTTSSEEEEEET--TEEEEEESSS
T ss_pred             ceeEECCCCCEEEEEeC--CcEEEEECCC
Confidence            6889999998 666654  7888888654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=84.14  E-value=20  Score=40.78  Aligned_cols=109  Identities=10%  Similarity=0.041  Sum_probs=65.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD~~  154 (486)
                      -.+++++++|+++++-..++.|..++.....  ....+.+.                -..-..+++.+  ++.++++-..
T Consensus       660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          660 VLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEH----------------SEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSCCEEEEEET
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCC----------------CCcEEEEEEecCCCceEEEEEeC
Confidence            5789999999977777778899999876432  12222221                11345778877  4446666666


Q ss_pred             CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          155 NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       155 n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      ++.|+.+|...   +.++.+..                .....++ ..+++.++++-..++.|+.++..
T Consensus       722 d~~v~vwd~~~~~~~~~~~~h~----------------~~v~~~~-~sp~~~~l~s~s~dg~v~vwd~~  773 (1249)
T 3sfz_A          722 DFFLKLWDLNQKECRNTMFGHT----------------NSVNHCR-FSPDDELLASCSADGTLRLWDVR  773 (1249)
T ss_dssp             TSCEEEEETTSSSEEEEECCCS----------------SCEEEEE-ECSSTTEEEEEESSSEEEEEEGG
T ss_pred             CCeEEEEECCCcchhheecCCC----------------CCEEEEE-EecCCCEEEEEECCCeEEEEeCC
Confidence            77888888654   34443321                1123444 45556555555566666666654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=84.02  E-value=4  Score=38.39  Aligned_cols=104  Identities=15%  Similarity=0.070  Sum_probs=63.6

Q ss_pred             EccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC---CCCEEEEeCCCCEE
Q 011435           82 VSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD---KGNLYVADTLNLAI  158 (486)
Q Consensus        82 Vd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~---dG~LYVAD~~n~rI  158 (486)
                      ++++|+++++-..++.|..++.....   .....+.                -.....+++++   +|+++++-..++.|
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~----------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMA---LRWETNI----------------KNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTE---EEEEEEC----------------SSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCc---eeeecCC----------------CCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            56788877777777899999986432   1111111                11457899998   78866655667889


Q ss_pred             EEEcCCC---ceEEc-----CCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCC
Q 011435          159 RKIGDAG---VTTIA-----GGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       159 rkid~~G---v~tia-----Gg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G  221 (486)
                      +.+|...   +..+.     +.                -.....++ ..+++. ++++-..++.|+.++...
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKAH----------------KSTVWQVR-HLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEECC----------------SSCEEEEE-EETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEEeCcCCCcccceeeeccCCC----------------cCCEEEEE-ECCCCCcEEEEEeCCCcEEEeecCC
Confidence            8888543   22221     11                01234565 455665 677777777888887653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=83.95  E-value=15  Score=35.07  Aligned_cols=112  Identities=7%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             eeEEE-----cc-CCeEEEEECCCCEEEEEcCCCCc----cccc-EEEecccCCccccCCCCccccccCCcceEEEcCCC
Q 011435           78 YKIRV-----SE-DGELFAVDEVNSNIVKITPPLSQ----YSRG-RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        78 ~GlAV-----d~-dG~LYVaD~~n~rI~kid~~g~~----~~~~-~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      ..|++     .+ ||.++++-...+.|...+.....    .+.. ..+.|.                -..-..|+++++|
T Consensus        25 ~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h----------------~~~V~~~~~~~~~   88 (343)
T 2xzm_R           25 TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH----------------NHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC----------------SSCEEEEEECSST
T ss_pred             hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC----------------CCceEEEEECCCC
Confidence            56777     55 88888887777788877754211    0000 111111                1124688999999


Q ss_pred             CEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          147 NLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       147 ~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+.++-..++.|+..|...   +.++.+..                ..-..++ ..++++.+++-...+.|+.++..+.
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~----------------~~v~~v~-~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQ----------------SEVYSVA-FSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCC----------------SCEEEEE-ECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCC----------------CcEEEEE-ECCCCCEEEEEcCCCEEEEEeccCC
Confidence            9777777788999998654   44554321                1124565 4667766666667788888887653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=83.89  E-value=5.5  Score=40.76  Aligned_cols=110  Identities=12%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC----------C
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD----------K  145 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~----------d  145 (486)
                      ....++++++|.++++-..++.|..++....     ..+.- ..+           ..-...+.|++++          +
T Consensus       490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~-~~~-----------~h~~~v~~~~~sp~~~~~~~~~~~  552 (615)
T 1pgu_A          490 KPSYISISPSETYIAAGDVMGKILLYDLQSR-----EVKTS-RWA-----------FRTSKINAISWKPAEKGANEEEIE  552 (615)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEC-CSC-----------CCSSCEEEEEECCCC------CCS
T ss_pred             ceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-----cceeE-eec-----------CCCCceeEEEEcCccccccccccC
Confidence            4578999999997777777788998887532     22221 111           0112467899999          8


Q ss_pred             CCEEEEeCCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          146 GNLYVADTLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       146 G~LYVAD~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      |.++++=..++.|+.++...    +.++.+.                -.....+++ .+++. +++-..++.|+.++++
T Consensus       553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h----------------~~~v~~l~~-s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAH----------------KDGVNNLLW-ETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSS----------------TTCEEEEEE-EETTE-EEEEETTSCEEEEEEC
T ss_pred             CCEEEEEcCCCcEEEEECCCCceechhhhcC----------------ccceEEEEE-cCCCC-eEEecCCceEEEEeee
Confidence            98666655677888888654    2222211                112356764 55666 5666666777777765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=83.79  E-value=26  Score=32.06  Aligned_cols=147  Identities=12%  Similarity=0.129  Sum_probs=80.1

Q ss_pred             ccceecccCCCCCCCCCCcE--EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEE
Q 011435           36 SLLKWTTRSSSKAPQADGNV--LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRL  113 (486)
Q Consensus        36 ~~~~w~~~s~t~t~~~~gsv--v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~  113 (486)
                      ..+.|.... .-+...++.|  .+...|..+.++.. ......=..|++.++|+++++-..++.|...+.....  ....
T Consensus        29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~-~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--~~~~  104 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRN  104 (318)
T ss_dssp             BCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEEC-CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEE
T ss_pred             eEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEe-cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--eEEE
Confidence            346675421 1122234555  45566766665532 1111123689999999988887888899999876432  1222


Q ss_pred             EecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC----ceEEcCCCCCCCCcCCCCcccccc
Q 011435          114 VAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKF  189 (486)
Q Consensus       114 vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f  189 (486)
                      +.+.                  ...-.++..++.+.++-...+.++..+...    +.++.+..                
T Consensus       105 ~~~h------------------~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  150 (318)
T 4ggc_A          105 MTSH------------------SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS----------------  150 (318)
T ss_dssp             EECC------------------SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS----------------
T ss_pred             ecCc------------------cceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc----------------
Confidence            2221                  112234444566666555566666665443    23333321                


Q ss_pred             CCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          190 SNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       190 ~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .....++ ...++.++++-..++.|+.++...
T Consensus       151 ~~~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          151 QEVCGLR-WAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             SCEEEEE-ECTTSSEEEEEETTSCEEEEESSC
T ss_pred             CceEEEE-EcCCCCEEEEEecCcceeEEECCC
Confidence            1122343 566777777777777888888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=83.39  E-value=16  Score=36.09  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             EEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEE
Q 011435           81 RVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRK  160 (486)
Q Consensus        81 AVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrk  160 (486)
                      +++++|+++++-..++.|..++.....  ....+.+.                -.....++++++|+.+++-..++.|+.
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILSGH----------------TDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC----------------CCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            345566766666667788888875321  11122111                123568999999997666667788999


Q ss_pred             EcCCC---ceEEc
Q 011435          161 IGDAG---VTTIA  170 (486)
Q Consensus       161 id~~G---v~tia  170 (486)
                      +|...   +.++.
T Consensus       337 wd~~~~~~~~~~~  349 (464)
T 3v7d_B          337 WDLENGELMYTLQ  349 (464)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             EECCCCcEEEEEe
Confidence            99653   44543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.32  E-value=3.6  Score=40.47  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      ..|++++||.++++-...+.|..+|.....  ....+.      .|+         -..-+.|++++||.++++=...+.
T Consensus       273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~~~~~~------~gH---------~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          273 TSMDVDMKGELAVLASNDNSIALVKLKDLS--MSKIFK------QAH---------SFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEET------TSS---------SSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeEEECCCCCceEEEcCCCEEEEEECCCCc--EEEEec------Ccc---------cCCEEEEEECCCCCEEEEEeCCCe
Confidence            578899999988877777889999876321  111111      111         124579999999998888778889


Q ss_pred             EEEEcC
Q 011435          158 IRKIGD  163 (486)
Q Consensus       158 Irkid~  163 (486)
                      |++++.
T Consensus       336 vrvw~i  341 (365)
T 4h5i_A          336 IHIIKL  341 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            998884

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=83.25  E-value=23  Score=32.28  Aligned_cols=68  Identities=12%  Similarity=0.018  Sum_probs=43.6

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|++ ++|+++++-..++.|..++.....  ....+.+.                -.....|+++++|+++++-..++
T Consensus        21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A           21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--LGTVVYTG----------------QGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             EEEEEE-EETTEEEEEETTSEEEEEEESSSE--EEEEEEEC----------------SSCEEEEEEETTTTEEEEEETTS
T ss_pred             cEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--EEEEeecC----------------CccEEEEEECCCCCEEEEecCCC
Confidence            467888 777766666677888888875321  11122211                11356899999999666655677


Q ss_pred             EEEEEcC
Q 011435          157 AIRKIGD  163 (486)
Q Consensus       157 rIrkid~  163 (486)
                      .|+.++.
T Consensus        82 ~i~~~~~   88 (313)
T 3odt_A           82 MINGVPL   88 (313)
T ss_dssp             CEEEEET
T ss_pred             eEEEEEe
Confidence            7877764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.24  E-value=16  Score=34.89  Aligned_cols=119  Identities=15%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             ceeEEEccCCe-EEEEEC--CCCE--EEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEE
Q 011435           77 PYKIRVSEDGE-LFAVDE--VNSN--IVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYV  150 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~--~n~r--I~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYV  150 (486)
                      +..+++++||+ |+++..  ....  |++++..+..   ...+...    .+          .    .+++++ +|.+++
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~----~~----------~----~~~~s~~dg~~l~  298 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVM----PP----------C----SHLMSNFDGSLMV  298 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEEC----CS----------E----EEEEECSSSSEEE
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeC----CC----------C----CCCccCCCCceEE
Confidence            45678999998 555432  2334  9999876432   2222211    00          1    167888 898766


Q ss_pred             EeC----------------CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeC--
Q 011435          151 ADT----------------LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR--  209 (486)
Q Consensus       151 AD~----------------~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~--  209 (486)
                      +..                ++..|+++|.++  +..+...... .+..++    ........+++ .++| .|+++..  
T Consensus       299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~----~~~~~~~~~~~-s~dg~~l~~~s~~~  372 (396)
T 3c5m_A          299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS-WDVLDG----DRQITHPHPSF-TPNDDGVLFTSDFE  372 (396)
T ss_dssp             EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC-CCCBTT----BSSTTCCCCEE-CTTSSEEEEEECTT
T ss_pred             EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc-cccccc----cccCCCCCceE-ccCCCeEEEEecCC
Confidence            532                347899998765  4444332100 000000    00011233443 4455 5666553  


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      +...|..+++++.
T Consensus       373 ~~~~l~~~~~~~~  385 (396)
T 3c5m_A          373 GVPAIYIADVPES  385 (396)
T ss_dssp             SSCEEEEEECCTT
T ss_pred             CCceEEEEEEccc
Confidence            3346888887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=83.08  E-value=28  Score=36.72  Aligned_cols=69  Identities=14%  Similarity=0.049  Sum_probs=41.6

Q ss_pred             eeEEEcc--CCeEEE-EEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcce-EEEcCCCC-EEEE
Q 011435           78 YKIRVSE--DGELFA-VDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKG-VTMDDKGN-LYVA  151 (486)
Q Consensus        78 ~GlAVd~--dG~LYV-aD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~G-IavD~dG~-LYVA  151 (486)
                      .++++.+  ||.+++ ++. +..+|+.++.++..   ...+.+.   .             ..-.. ++++++|+ ||++
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l~~~---~-------------~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL---IRQVTKG---E-------------WEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE---EEECCCS---S-------------SCEEEEEEECTTSSEEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCE---EEecCCC---C-------------eEEEeeeEEcCCCCEEEEE
Confidence            5678999  998544 433 23478888765421   2222221   0             01123 78999997 7777


Q ss_pred             eCCCC----EEEEEcCCC
Q 011435          152 DTLNL----AIRKIGDAG  165 (486)
Q Consensus       152 D~~n~----rIrkid~~G  165 (486)
                      -..++    +|++++.++
T Consensus       374 ~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          374 STEASPLERHFYCIDIKG  391 (706)
T ss_dssp             ESSSCTTCBEEEEEETTC
T ss_pred             ecCCCCceEEEEEEEcCC
Confidence            66554    899998755

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=83.01  E-value=2.4  Score=40.80  Aligned_cols=130  Identities=10%  Similarity=-0.049  Sum_probs=64.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcc-cccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQY-SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~-~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ...+++.++|+++++-..++.|..++.+.... .....+.+.               .-.....|+++++|+++++=..+
T Consensus       103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------------LRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---------------CCSCEEEEEECTTSSEEEEEESS
T ss_pred             eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---------------cCCCeEEEEEcCCCCEEEEEeCC
Confidence            46777878887555555566777777653210 001222210               11245789999999866665566


Q ss_pred             CEEEEEcCCC--ceEE-cCCCCCCCCcCCCC--ccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          156 LAIRKIGDAG--VTTI-AGGKSNVAGFRDGP--SEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       156 ~rIrkid~~G--v~ti-aGg~~g~~G~~DG~--~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                      +.|+.+|...  +..- .....+.. ...+.  ..-..-.....++ ..++|.++++-..++.|+.++.....
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSR-LPFNTVCAEYPSGGWVHAVG-FSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSC-CCEEEEEECCCCSSSEEEEE-ECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             CEEEEEEEEecccCCCccccccccc-cchhhhhhcccCCceEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            7788887531  1000 00000000 00000  0000011234565 56777777776777888888887543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=82.70  E-value=13  Score=34.67  Aligned_cols=76  Identities=4%  Similarity=-0.072  Sum_probs=44.9

Q ss_pred             cceeEEEcc---CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           76 VPYKIRVSE---DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        76 ~P~GlAVd~---dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ....+++++   +|+++++-..++.|..++........ ....-..   .+         .-.....++++++|. ++++
T Consensus       211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~---~~---------~~~~v~~~~~~~~~~~~l~~  277 (357)
T 3i2n_A          211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK-GFASVSE---KA---------HKSTVWQVRHLPQNRELFLT  277 (357)
T ss_dssp             CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT-EEEEEEE---EC---------CSSCEEEEEEETTEEEEEEE
T ss_pred             ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc-ceeeecc---CC---------CcCCEEEEEECCCCCcEEEE
Confidence            357888988   78866666677888888764221000 0000000   01         112456899999988 6666


Q ss_pred             eCCCCEEEEEcCC
Q 011435          152 DTLNLAIRKIGDA  164 (486)
Q Consensus       152 D~~n~rIrkid~~  164 (486)
                      -..++.|+.+|..
T Consensus       278 ~~~dg~i~iwd~~  290 (357)
T 3i2n_A          278 AGGAGGLHLWKYE  290 (357)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCcEEEeecC
Confidence            5567788877743

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=82.69  E-value=32  Score=32.23  Aligned_cols=113  Identities=11%  Similarity=0.059  Sum_probs=67.1

Q ss_pred             cceeEEEccC--CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC---------
Q 011435           76 VPYKIRVSED--GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD---------  144 (486)
Q Consensus        76 ~P~GlAVd~d--G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~---------  144 (486)
                      ....+++.++  |.++++-..++.|..++...........+.+.                -..-..+++++         
T Consensus       103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC----------------TTCEEEEEECCCC-------
T ss_pred             ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC----------------CCceEEEEEcCccccccccc
Confidence            3578888887  77777666777888888764321111112111                11245777777         


Q ss_pred             ----CCCEEEEeCCCCEEEEEcCCC---c----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC---CeEEEEeCC
Q 011435          145 ----KGNLYVADTLNLAIRKIGDAG---V----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT---CSLLVIDRG  210 (486)
Q Consensus       145 ----dG~LYVAD~~n~rIrkid~~G---v----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~---G~LYVaD~g  210 (486)
                          +++++++-..++.|+.+|...   .    .++.+.                -.....++ ..++   +.++++-..
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h----------------~~~v~~~~-~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH----------------SDWVRDVA-WSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC----------------SSCEEEEE-ECCCCSSSEEEEEEET
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc----------------cCcEeEEE-ECCCCCCCCeEEEEeC
Confidence                577666666677888887432   1    122211                01234566 4566   777777777


Q ss_pred             CCeEEEEECCC
Q 011435          211 NAALRQISLNQ  221 (486)
Q Consensus       211 n~rIr~id~~G  221 (486)
                      ++.|+.++...
T Consensus       230 dg~i~iwd~~~  240 (379)
T 3jrp_A          230 DRTCIIWTQDN  240 (379)
T ss_dssp             TSCEEEEEESS
T ss_pred             CCEEEEEeCCC
Confidence            78888888775

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=82.05  E-value=36  Score=35.73  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..+++.+||.++++-..++.|..++.....  ....+........+         .-....+|+++++|.++++=..++
T Consensus       193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~---------h~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVA---------HSGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCS---------SSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCc--Eeeeeccccccccc---------cCCCEEEEEECCCCCEEEEEeCCC
Confidence            4678888888888877777788888754221  01111000000001         122467899999999777766778


Q ss_pred             EEEEEcCCC
Q 011435          157 AIRKIGDAG  165 (486)
Q Consensus       157 rIrkid~~G  165 (486)
                      .|+..|...
T Consensus       262 ~v~lWd~~~  270 (611)
T 1nr0_A          262 TIKIWNVAT  270 (611)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEeCCC
Confidence            899888653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=81.94  E-value=20  Score=34.83  Aligned_cols=127  Identities=11%  Similarity=0.031  Sum_probs=70.8

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEec-ccCCccccCCCCccccccCCcceEEEcCCC-CEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAG-SFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG-~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYVAD~~  154 (486)
                      -..+++.++|+++++- ..+.|..++.....  ....+.. ......+         .-.....++++++| +++++=..
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEE---------LTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGG---------CCCCEEEEEECSSCTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccc---------cCcceEEEEECCCCCcEEEEEeC
Confidence            5789999999987776 68899999876211  1111110 0000011         11245789999998 77776666


Q ss_pred             CCEEEEEcCCC--c-----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGDAG--V-----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~G--v-----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++.|+.+|...  .     .++.+....    ............-..++ ..++|.++++-.. +.|+.++...
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDP----SNRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTC
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCc----cccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCC
Confidence            78899998654  2     333221000    00000000001234566 5667776666656 8999999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=81.92  E-value=18  Score=38.25  Aligned_cols=72  Identities=15%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             cceeEEEccCCe-EEEEECC--------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC
Q 011435           76 VPYKIRVSEDGE-LFAVDEV--------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~--------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      ....+++++||+ |.++...        .+.|+.++.++..   ...+...    .+         .-.....+++++||
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~----~~---------~~~~~~~~~~SPdG  125 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD---PQSLDPP----EV---------SNAKLQYAGWGPKG  125 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC---CEECCCT----TC---------CSCCCSBCCBCSST
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc---eEeccCC----cc---------ccccccccEECCCC
Confidence            368899999999 4444221        2578888876432   2222211    00         00124567888888


Q ss_pred             C-EEEEeCCCCEEEEEcCCC
Q 011435          147 N-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       147 ~-LYVAD~~n~rIrkid~~G  165 (486)
                      + |.++..  +.|++++.++
T Consensus       126 ~~la~~~~--~~i~~~~~~~  143 (723)
T 1xfd_A          126 QQLIFIFE--NNIYYCAHVG  143 (723)
T ss_dssp             TCEEEEET--TEEEEESSSS
T ss_pred             CEEEEEEC--CeEEEEECCC
Confidence            6 444432  5788887665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.82  E-value=26  Score=33.39  Aligned_cols=72  Identities=8%  Similarity=-0.148  Sum_probs=40.4

Q ss_pred             ceeEEEcc-CCe-EEE-EECCC----CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435           77 PYKIRVSE-DGE-LFA-VDEVN----SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L  148 (486)
Q Consensus        77 P~GlAVd~-dG~-LYV-aD~~n----~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L  148 (486)
                      ...+++++ ||. |++ ++...    .+|+.++.++..   ...+...   .           .-..+..++++++|+ |
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~---~-----------~~~~~~~~~~spdg~~l  252 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEH---A-----------EGESCTHEFWIPDGSAM  252 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCC---C-----------TTEEEEEEEECTTSSCE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeecc---C-----------CCccccceEECCCCCEE
Confidence            46778888 676 544 43222    478888876432   2222110   0           001245689999998 5


Q ss_pred             EEE-eC-CCCE--EEEEcCCC
Q 011435          149 YVA-DT-LNLA--IRKIGDAG  165 (486)
Q Consensus       149 YVA-D~-~n~r--Irkid~~G  165 (486)
                      +++ +. +...  |+++|..+
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTT
T ss_pred             EEEecCCCCccceEEEEECCC
Confidence            554 32 3334  99998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=80.57  E-value=17  Score=34.66  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=46.1

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCC-cccc-cEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLS-QYSR-GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~-~~~~-~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      -.+++++++|+++++-...+.|..++.+.. .... ...+.+.                -..-..|+++++|+++++=..
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH----------------SQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC----------------SSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC----------------CCceEEEEECCCCCEEEEEcC
Confidence            467899999998887777788888887321 1001 1112221                113468999999997777666


Q ss_pred             CCEEEEEcC
Q 011435          155 NLAIRKIGD  163 (486)
Q Consensus       155 n~rIrkid~  163 (486)
                      ++.|+..+.
T Consensus       174 D~~i~iW~~  182 (330)
T 2hes_X          174 DDTVRIWKD  182 (330)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEC
Confidence            778887764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=80.52  E-value=19  Score=34.30  Aligned_cols=111  Identities=15%  Similarity=0.155  Sum_probs=66.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcc----cc-cEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEE
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQY----SR-GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA  151 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~----~~-~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA  151 (486)
                      -..|++.++|+++++-...+.|...+......    .. ..++.|       +         -..-..|+++++|+++++
T Consensus        61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-------h---------~~~V~~v~~sp~g~~las  124 (330)
T 2hes_X           61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-------H---------ENEVKGVAWSNDGYYLAT  124 (330)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------CEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-------C---------CCcEEEEEECCCCCEEEE
Confidence            46899999999888777778888887642110    00 111111       1         113468999999997766


Q ss_pred             eCCCCEEEEEcCC--C-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435          152 DTLNLAIRKIGDA--G-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN  220 (486)
Q Consensus       152 D~~n~rIrkid~~--G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~  220 (486)
                      =..++.|+..|..  +     +.++.+..                .....++ ..+++.++++-..++.|+.++..
T Consensus       125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~----------------~~v~~v~-~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          125 CSRDKSVWIWETDESGEEYECISVLQEHS----------------QDVKHVI-WHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             EETTSCEEEEECCTTCCCCEEEEEECCCS----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEEE
T ss_pred             EeCCCEEEEEeccCCCCCeEEEEEeccCC----------------CceEEEE-ECCCCCEEEEEcCCCeEEEEECC
Confidence            6667888888862  1     12222210                1123555 46677777777777888887754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=80.18  E-value=8.9  Score=39.83  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=22.0

Q ss_pred             ceEEEcCCCCEEE-E-e-CCC-CEEEEEcCCC--ceEEcC
Q 011435          138 KGVTMDDKGNLYV-A-D-TLN-LAIRKIGDAG--VTTIAG  171 (486)
Q Consensus       138 ~GIavD~dG~LYV-A-D-~~n-~rIrkid~~G--v~tiaG  171 (486)
                      ..+++++||...+ + + ..+ ..|+++|.++  +.++.+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence            6889999999433 2 2 222 5688998654  566644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	486
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	5e-06
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	2e-05

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 120 GYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAG 178
           G  G ++G+     F  P GV ++ + ++ VADT N  I+     G      G       
Sbjct: 13  GEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS 67

Query: 179 FRDGPSEDAKFSNDFDVVYVRPTC 202
               P+  A   N  D++    + 
Sbjct: 68  QLLYPNRVAVVRNSGDIIVTERSP 91

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 134 FNHPKGVTMDDKGNLYVADTLNLAIRKI 161
            N P  V +D    +YVAD  N  + K+
Sbjct: 223 LNTPLAVAVDSDRTVYVADRGNDRVVKL 250

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	486
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.34
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.27
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.17
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.23
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.16
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.07
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.05
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.73
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.59
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.21
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.21
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.04
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.89
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.36
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.35
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.29
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.99
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.97
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.17
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.38
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.25
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.21
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	91.23
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.31
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.63
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	87.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	87.79
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.42
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	85.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	85.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	83.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	82.09
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	80.94

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1e-15  Score=145.83  Aligned_cols=116  Identities=20%  Similarity=0.331  Sum_probs=96.7

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      +..|.||+++++|++|++|..+++|.+++.++..    .....              ...|..|.||++|++|+|||+|.
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~----~~~~~--------------~~~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----QVVLP--------------FTDITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC----EEECC--------------CSSCCSEEEEEECTTCCEEEEET
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccce----eeeee--------------ccccCCCccceeeeeeeeeeeec
Confidence            3689999999999999999999999999988542    22222              12477899999999999999999


Q ss_pred             CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          154 LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       154 ~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+++|.++++++ ..++...              ..|..|.+|+ ++++|+|||+|.+++||++|+..++
T Consensus       201 ~~~~i~~~~~~~~~~~~~~~--------------~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         201 NTNQVVKLLAGSTTSTVLPF--------------TGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCC--------------CSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCEEEEEeCCCCeEEEEcc--------------CCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCCCC
Confidence            999999999988 5444432              2377899998 7899999999999999999998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=9.8e-15  Score=140.32  Aligned_cols=161  Identities=15%  Similarity=0.197  Sum_probs=113.7

Q ss_pred             cCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEeccc--------------------------CCccc---
Q 011435           73 IGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSF--------------------------QGYTG---  123 (486)
Q Consensus        73 ~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~--------------------------~G~~G---  123 (486)
                      .+..|.|||||++|+|||+|..|+||++++++|..    ....+..                          .+..+   
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCE----EEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence            36789999999999999999999999999998642    1111110                          00000   


Q ss_pred             --cCCCCc----cccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCcee
Q 011435          124 --HVDGKP----NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDV  195 (486)
Q Consensus       124 --~~dG~~----~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gI  195 (486)
                        ..+|..    ....++.|.++++|++|++|++|..+++|.+++++|  +.++...              ..+..|.++
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~--------------~~~~~~~~i  162 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--------------KHLEFPNGV  162 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--------------TTCSSEEEE
T ss_pred             cccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc--------------cccccccee
Confidence              012221    234578999999999999999999999999999999  4555321              346789999


Q ss_pred             EEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEeec
Q 011435          196 VYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRT  264 (486)
Q Consensus       196 a~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~  264 (486)
                      + ++++|+|||+|..+++|++++.+|......+..          |....+.++|+  +..|++++++.
T Consensus       163 ~-~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~----------g~~~~P~giav--D~~G~i~Vad~  218 (279)
T d1q7fa_         163 V-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE----------GITNYPIGVGI--NSNGEILIADN  218 (279)
T ss_dssp             E-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT----------TTSCSEEEEEE--CTTCCEEEEEC
T ss_pred             e-eccceeEEeeeccccceeeeecCCceeeeeccc----------ccccCCccccc--ccCCeEEEEEC
Confidence            7 799999999999999999999998632221111          11223345555  56677888765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.1e-14  Score=138.48  Aligned_cols=147  Identities=16%  Similarity=0.242  Sum_probs=111.2

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      +..|.||++|++|+||++|..++++.+++..+..    ..+..              ...++.|.||++|++|+|||+|.
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLP--------------FTGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS----CEECC--------------CCSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeecccccccccceeEeeccccccccccccccce----eeeee--------------ecccCCcceeeecCCCCEeeecc
Confidence            3679999999999999999999999999987532    12222              12367899999999999999999


Q ss_pred             CCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCC
Q 011435          154 LNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSIS  232 (486)
Q Consensus       154 ~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~  232 (486)
                      .+++|.+++.++ .......              ..+..|.+|+ +|++|+|||+|..+++|.+++.++..+......  
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~--------------~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~--  221 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPF--------------TDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--  221 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCC--------------SSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCC--
T ss_pred             ccccccccccccceeeeeec--------------cccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC--
Confidence            999999999988 3333221              3467899997 789999999999999999999987643332111  


Q ss_pred             CcceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          233 PTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       233 ~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                               .+..+.++|+  +..|.+++++.++
T Consensus       222 ---------~~~~P~~i~~--d~~g~l~vad~~~  244 (260)
T d1rwia_         222 ---------GLNTPLAVAV--DSDRTVYVADRGN  244 (260)
T ss_dssp             ---------SCCCEEEEEE--CTTCCEEEEEGGG
T ss_pred             ---------CCCCeEEEEE--eCCCCEEEEECCC
Confidence                     1123455666  5567888887754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=2.8e-14  Score=137.12  Aligned_cols=147  Identities=15%  Similarity=0.250  Sum_probs=110.6

Q ss_pred             CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      +..|.++++|++|.+|++|..+++|.++++++..    ....|.             ...+..|.+|++|++|+|||+|.
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~----~~~~g~-------------~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV----LHKFGC-------------SKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE----EEEEEC-------------TTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccCCce----eecccc-------------cccccccceeeeccceeEEeeec
Confidence            4679999999999999999999999999998542    222221             23477899999999999999999


Q ss_pred             CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCCCceeecccC
Q 011435          154 LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQDDCEYQYNS  230 (486)
Q Consensus       154 ~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G~~~~~~~~~  230 (486)
                      .+++|+++|.+|  +.++..              ...+..|.+|+ +|++|+|||+|.. +++|.+++.+|+.       
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~--------------~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~~G~~-------  233 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGG--------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQL-------  233 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESC--------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCE-------
T ss_pred             cccceeeeecCCceeeeecc--------------cccccCCcccc-cccCCeEEEEECCCCcEEEEECCCCCE-------
Confidence            999999999999  555532              13578899997 8999999999986 4589999998861       


Q ss_pred             CCCcceEEEEeee--eecceEeeeccCCcceEEeecCC
Q 011435          231 ISPTDILMVVGAV--LVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       231 ~~~~~i~t~~g~~--~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                           +.++....  ..++.+|+.  ..|.+++++.++
T Consensus       234 -----~~~~~~~~~~~~p~~vav~--~dG~l~V~~~n~  264 (279)
T d1q7fa_         234 -----ISALESKVKHAQCFDVALM--DDGSVVLASKDY  264 (279)
T ss_dssp             -----EEEEEESSCCSCEEEEEEE--TTTEEEEEETTT
T ss_pred             -----EEEEeCCCCCCCEeEEEEe--CCCcEEEEeCCC
Confidence                 11121111  134566664  446788876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.44  E-value=2.2e-13  Score=133.94  Aligned_cols=123  Identities=11%  Similarity=0.136  Sum_probs=91.0

Q ss_pred             CccceeEEEccCCeEEEEECCC------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           74 GVVPYKIRVSEDGELFAVDEVN------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~n------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      ...|+++++|++|+|||+|..+      +.|+++++++..   ...+..                .+..|+||+++++|+
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~----------------~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQ----------------NISVANGIALSTDEK  189 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEE----------------EESSEEEEEECTTSS
T ss_pred             ccCCcceeEEeccceeecccccccccCcceeEEEecccce---eEEEee----------------ccceeeeeeeccccc
Confidence            4679999999999999999754      359999988642   333333                256899999999997


Q ss_pred             -EEEEeCCCCEEEEEcC--CC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          148 -LYVADTLNLAIRKIGD--AG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       148 -LYVAD~~n~rIrkid~--~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                       |||+|+.+++|++++.  +| .....+..        .......+..|.||+ +|.+|+|||++.++++|++|+++|+.
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~--------~~~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~V~~~~p~G~~  260 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGAT--------IPYYFTGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGYP  260 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEE--------EEEECCSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccce--------eeeccCCccceeeee-EcCCCCEEEEEcCCCEEEEECCCCcE
Confidence             9999999999999974  33 21111100        000111234588997 89999999999999999999999973


Q ss_pred             e
Q 011435          224 C  224 (486)
Q Consensus       224 ~  224 (486)
                      .
T Consensus       261 l  261 (319)
T d2dg1a1         261 I  261 (319)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.42  E-value=3.9e-12  Score=125.00  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             EEEEecCcccCccceeEEEccCCeEEEEECC-------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435           64 VETVIEGNEIGVVPYKIRVSEDGELFAVDEV-------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH  136 (486)
Q Consensus        64 vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~-------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~  136 (486)
                      ++.+.++-   ..|+|+++|++|+|||+|..       +++|+++++++..   ...+......           ..-..
T Consensus        10 ~~~v~~~~---~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~---~~~~~~~~~~-----------~~~g~   72 (314)
T d1pjxa_          10 FTKVTEDI---PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVN-----------GYGGI   72 (314)
T ss_dssp             CEEEECCC---TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEET-----------TEECC
T ss_pred             eEEeecCC---CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc---EEEEECCccc-----------cCCCc
Confidence            34444442   35999999999999999865       4689999998643   3333321000           01126


Q ss_pred             cceEEEcCCCC-EEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC----
Q 011435          137 PKGVTMDDKGN-LYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG----  210 (486)
Q Consensus       137 P~GIavD~dG~-LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g----  210 (486)
                      |+||++|++|+ |||+|.. ++|++++++| ..+++...          .....|+.|++++ ++++|+|||+|..    
T Consensus        73 P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~----------~~g~~~~~pndl~-~d~~G~lyvtd~~~~~~  140 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKD----------SEGRRMQGCNDCA-FDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBC----------TTSCBCBCCCEEE-ECTTSCEEEEECBCBCT
T ss_pred             ceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEecc----------ccccccCCCcEEE-ECCCCCEEEecCccCcc
Confidence            99999999997 8999964 7899999998 54443321          1124588899998 7999999999964    


Q ss_pred             -----------CCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCc---ceEEeecC
Q 011435          211 -----------NAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFG---PFFFSRTQ  265 (486)
Q Consensus       211 -----------n~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g---~~~~a~~~  265 (486)
                                 .++|.+++.+|.             +..+......++++++..++.+   .+++++..
T Consensus       141 ~~~~~~~~~~~~G~v~~~~~dg~-------------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         141 PADYTRSMQEKFGSIYCFTTDGQ-------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTTSC-------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             cccccceeccCCceEEEEeecCc-------------eeEeeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence                       347888888874             3334444445567777655432   46666553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.34  E-value=2.1e-11  Score=119.55  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             ccceeEEEccCCeEEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEE
Q 011435           75 VVPYKIRVSEDGELFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYV  150 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYV  150 (486)
                      ..|.||++++||+|||++..    ...|++++..+..   ...+...             ....+.|+++++|++|+|||
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~---~~~~~~~-------------~~~~~~~nd~~~d~~G~l~v  145 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN---LQDIIED-------------LSTAYCIDDMVFDSKGGFYF  145 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS---CEEEECS-------------SSSCCCEEEEEECTTSCEEE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce---eeeeccC-------------CCcccCCcceeEEeccceee
Confidence            46999999999999999864    4568888887543   3333321             12356799999999999999


Q ss_pred             EeCCC------CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          151 ADTLN------LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       151 AD~~n------~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                      +|..+      +.|+++++++  +..+..+                +..|+||+ +++++ .|||+|+.+++|++|+.+.
T Consensus       146 td~~~~~~~~~g~v~~~~~dg~~~~~~~~~----------------~~~pnGia-~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         146 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------------ISVANGIA-LSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEEEEEE----------------ESSEEEEE-ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cccccccccCcceeEEEecccceeEEEeec----------------cceeeeee-eccccceEEEecccCCceEEEEEcC
Confidence            99764      3589999887  4555432                56799998 56665 6999999999999999875


Q ss_pred             C
Q 011435          222 D  222 (486)
Q Consensus       222 ~  222 (486)
                      .
T Consensus       209 ~  209 (319)
T d2dg1a1         209 D  209 (319)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.34  E-value=6.7e-12  Score=123.23  Aligned_cols=138  Identities=16%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             CCcEEEccCCcEEEEEecCcccCccceeEEEccCC-----eEEEEECCCCEEEEEcCCCCc-ccccEEEecccCCccccC
Q 011435           52 DGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDG-----ELFAVDEVNSNIVKITPPLSQ-YSRGRLVAGSFQGYTGHV  125 (486)
Q Consensus        52 ~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG-----~LYVaD~~n~rI~kid~~g~~-~~~~~~vaG~~~G~~G~~  125 (486)
                      .+.++.+........+..+   +..|+||++++++     .|||+|+.+++|++++.+... ....++++..    .   
T Consensus       152 ~G~v~~~~~dg~~~~~~~~---~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~----~---  221 (314)
T d1pjxa_         152 FGSIYCFTTDGQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI----P---  221 (314)
T ss_dssp             CEEEEEECTTSCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC----C---
T ss_pred             CceEEEEeecCceeEeeCC---cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc----c---
Confidence            4455544433233333332   3469999998876     399999999999998754211 0111122211    0   


Q ss_pred             CCCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC
Q 011435          126 DGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC  202 (486)
Q Consensus       126 dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G  202 (486)
                           ......|.||++|.+|+||||+..+++|++||+++  + .++...                ...|.++++ ++++
T Consensus       222 -----~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p----------------~~~~t~~af-g~d~  279 (314)
T d1pjxa_         222 -----GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP----------------FEKPSNLHF-KPQT  279 (314)
T ss_dssp             -----CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS----------------SSCEEEEEE-CTTS
T ss_pred             -----ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC----------------CCCEEEEEE-eCCC
Confidence                 01133599999999999999999999999999886  3 444321                235788986 6666


Q ss_pred             -eEEEEeCCCCeEEEEECCC
Q 011435          203 -SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       203 -~LYVaD~gn~rIr~id~~G  221 (486)
                       .|||++..+++|++++..-
T Consensus       280 ~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         280 KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEECCCCcEEEEECCC
Confidence             6999999999999999764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5e-11  Score=114.65  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD  152 (486)
                      ..|.|||+|. .++||++|..+++|.+++.+|..   ...+..               ..+..|.+|++|+ +|.||++|
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~---------------~~~~~P~~l~vd~~~g~ly~~~  138 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFR---------------ENGSKPRAIVVDPVHGFMYWTD  138 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEE---------------CTTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEc---------------CCCCCcceEEEEcccCeEEEec
Confidence            5699999995 67899999999999999998653   222221               1256899999998 77899999


Q ss_pred             CCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 011435          153 TLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE  225 (486)
Q Consensus       153 ~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~  225 (486)
                      .+. .+|.+.+.+|  ..++...               .+..|++|++...++.||++|..+++|.+++++|..+.
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECS---------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cCCCcceeEeccCCCceeccccc---------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence            864 5899999999  4555432               25679999965567899999999999999999986443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=8e-11  Score=113.26  Aligned_cols=129  Identities=19%  Similarity=0.208  Sum_probs=97.9

Q ss_pred             CCcEEEEEecCcccCccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK  138 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~  138 (486)
                      +|...+++....  ...|.|||+|. .++||++|...++|.++++++..   .++++..               .+..|.
T Consensus        66 ~g~~~~~v~~~~--~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~---~~~l~~~---------------~l~~p~  125 (263)
T d1npea_          66 HGGEPTTIIRQD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDT---------------GLVNPR  125 (263)
T ss_dssp             SSCCCEEEECTT--CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECS---------------SCSSEE
T ss_pred             ccCCcEEEEEec--cccccEEEEeccCCeEEEeccCCCEEEEEecCCce---EEEEecc---------------cccCCc
Confidence            344445555432  24699999995 77899999999999999998653   2344431               256899


Q ss_pred             eEEEcC-CCCEEEEeCCC--CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          139 GVTMDD-KGNLYVADTLN--LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       139 GIavD~-dG~LYVAD~~n--~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      +|++|+ .|.||++|.+.  .+|.+.+.+|  ...+...               .+..|.+|++...++.||++|.+.++
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------------~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------------NLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------------TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---------------cccccceEEEeecCcEEEEEeCCCCE
Confidence            999998 66699999863  4799999998  4444321               25679999965577899999999999


Q ss_pred             EEEEECCCCc
Q 011435          214 LRQISLNQDD  223 (486)
Q Consensus       214 Ir~id~~G~~  223 (486)
                      |.+++.+|..
T Consensus       191 I~~~~~~g~~  200 (263)
T d1npea_         191 AECLNPAQPG  200 (263)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCCCC
Confidence            9999999853

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.27  E-value=2e-11  Score=117.89  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=89.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      +|++||+++||+|||+|..+++|++++++|.    ...++..                -..|.||+++++|+|||++..+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~----------------~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATV----------------EGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEEC----------------SSEEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcC----------------CCCcceEEEcCCCCeEEEecCC
Confidence            5899999999999999999999999999854    3344332                1268999999999999999988


Q ss_pred             CEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435          156 LAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD  223 (486)
Q Consensus       156 ~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~  223 (486)
                      +.|.+++..+    ...++..              .....|++++ ++++|++||+|..+++|++++..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTL--------------PDAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEEC--------------TTCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEEecccccceeecccc--------------CCccccceeE-EccCCCEEeeccccccceeeeccCCc
Confidence            8888776433    3444332              1134588997 79999999999999999999988753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=4.1e-10  Score=108.19  Aligned_cols=111  Identities=20%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             ccceeEEEcc-CCeEEEEECCC--CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVN--SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV  150 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n--~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV  150 (486)
                      ..|.+|++|+ .|.||++|.+.  .+|.+++++|..   ...++..               .+..|+|||+|..++ ||+
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~~~i~~~---------------~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQD---------------NLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECT---------------TCSCEEEEEEETTTTEEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---ceeeeee---------------cccccceEEEeecCcEEEE
Confidence            5799999997 67799999764  479999998753   2333321               255899999997554 999


Q ss_pred             EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          151 ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       151 AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +|...++|.+++.+|  ..+++.+                +..|.+|++ + ++.||++|.++++|.++++.+
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~~----------------~~~P~~lav-~-~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLEG----------------LQYPFAVTS-Y-GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEEC----------------CCSEEEEEE-E-TTEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCEEEEEECCCCCeEEEECC----------------CCCcEEEEE-E-CCEEEEEECCCCEEEEEECCC
Confidence            999999999999999  5555432                457999984 4 689999999999999999974

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-09  Score=105.30  Aligned_cols=114  Identities=21%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             ccceeEEEcc-CCeEEEEECCC-CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVN-SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n-~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      ..|.+|++|+ +|.||++|.+. .+|.+.+++|+.   ...++..               .+..|+||++|..++ ||++
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~---------------~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTE---------------NIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---eeccccc---------------ccceeeEEEeeccccEEEEe
Confidence            5699999997 78899999764 589999999753   3334431               256899999998554 9999


Q ss_pred             eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          152 DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       152 D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      |...++|.+++.+|  ...+....             ..+..|.+|+ ++ ++.||++|..+++|.++++.+
T Consensus       182 d~~~~~I~~~~~dG~~~~~~~~~~-------------~~~~~p~~la-v~-~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         182 DSKLHSISSIDVNGGNRKTILEDE-------------KRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECT-------------TTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTT
T ss_pred             cCCcCEEEEEECCCCCEEEEEeCC-------------CcccccEEEE-EE-CCEEEEEECCCCeEEEEECCC
Confidence            99999999999998  44443321             2356799998 45 589999999999999999764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=2.6e-09  Score=102.73  Aligned_cols=159  Identities=12%  Similarity=-0.017  Sum_probs=104.6

Q ss_pred             ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      ..|.||++++||+|||++..++.|.+++..+.. +....++..              .....|++|+++++|++||+|..
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL--------------PDAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC--------------TTCSCEEEEEESSSSEEEEEETT
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccc-cceeecccc--------------CCccccceeEEccCCCEEeeccc
Confidence            469999999999999999999888888765332 223333332              12346899999999999999999


Q ss_pred             CCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCC
Q 011435          155 NLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSIS  232 (486)
Q Consensus       155 n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~  232 (486)
                      +++|++++.++ . ..+........     ......+..|+++.. + .+.||+++..+++|++++.++.....      
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ngi~~-~-~~~l~~~~~~~~~i~~~~~~~~~~~~------  199 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLAR-----SNSESVFPAANGLKR-F-GNFLYVSNTEKMLLLRIPVDSTDKPG------  199 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSC-----SSTTCCSCSEEEEEE-E-TTEEEEEETTTTEEEEEEBCTTSCBC------
T ss_pred             cccceeeeccCCcceeEecCCccce-----eeccCcccccccccc-c-CCceeeecCCCCeEEecccccccccc------
Confidence            99999999877 3 22222111100     011233557788864 3 57899999999999999988642111      


Q ss_pred             CcceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          233 PTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       233 ~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                        ... ....+..+.++++  +..|.++++....
T Consensus       200 --~~~-~~~~~~~pdgia~--d~dG~l~va~~~~  228 (302)
T d2p4oa1         200 --EPE-IFVEQTNIDDFAF--DVEGNLYGATHIY  228 (302)
T ss_dssp             --CCE-EEEESCCCSSEEE--BTTCCEEEECBTT
T ss_pred             --ccc-cccCCCCCcceEE--CCCCCEEEEEcCC
Confidence              111 1112223456666  4556778777543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=8.8e-09  Score=99.66  Aligned_cols=121  Identities=13%  Similarity=0.123  Sum_probs=85.1

Q ss_pred             CccceeEEEccCCeEEEEECC------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435           74 GVVPYKIRVSEDGELFAVDEV------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN  147 (486)
Q Consensus        74 ~~~P~GlAVd~dG~LYVaD~~------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~  147 (486)
                      .+.|+++++|++|+|||++..      .+.+++++..     ..+.+..                .+..|+|++++++++
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-----~~~~~~~----------------~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-----KVTKLFA----------------DISIPNSICFSPDGT  160 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-----EEEEEEE----------------EESSEEEEEECTTSC
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecCC-----cEEEEee----------------ccCCcceeeecCCCc
Confidence            467899999999999999853      2356666532     2333332                256799999999988


Q ss_pred             -EEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          148 -LYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       148 -LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                       +||+|+.+++|++++.+. ...+.+..   ..+.+..   .....|.|++ +|.+|+|||+..++++|.+|+++|+
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~---~~~~~~~---~~~g~pdG~~-vD~~GnlWva~~~~g~V~~~dp~G~  230 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKA---EVFIDST---GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDTDGN  230 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCC---EEEEECT---TSSSEEEEEE-ECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             eEEEeecccceeeEeeecccccccccce---EEEeccC---cccccccceE-EcCCCCEEeeeeCCCceEEecCCCc
Confidence             999999999999997654 11111100   0000000   1123588997 8999999999999999999999986

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=1.4e-07  Score=90.86  Aligned_cols=154  Identities=11%  Similarity=0.072  Sum_probs=102.3

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC-
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL-  154 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~-  154 (486)
                      .|.+++.+.+|.|||+..  +.|+++++++.   +.+.++....           ....+.|+++++|++|+|||++.. 
T Consensus        60 ~~~~i~~~~dg~l~va~~--~gl~~~d~~tg---~~~~l~~~~~-----------~~~~~~~nd~~vd~~G~iw~~~~~~  123 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASD--DGLFLRDTATG---VLTLHAELES-----------DLPGNRSNDGRMHPSGALWIGTMGR  123 (295)
T ss_dssp             CEEEEEEEETTEEEEEET--TEEEEEETTTC---CEEEEECSST-----------TCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcEEEEEecCCCEEEEEe--CccEEeecccc---eeeEEeeeec-----------CCCcccceeeEECCCCCEEEEeccc
Confidence            478999999999999974  58999998753   3455554211           123567999999999999999854 


Q ss_pred             -----CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeeccc
Q 011435          155 -----NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYN  229 (486)
Q Consensus       155 -----n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~  229 (486)
                           .+.+++++.+.++.+...                +..|+++++......|||+|+.+++|++++.+.......+.
T Consensus       124 ~~~~~~g~l~~~~~g~~~~~~~~----------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~  187 (295)
T d2ghsa1         124 KAETGAGSIYHVAKGKVTKLFAD----------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  187 (295)
T ss_dssp             TCCTTCEEEEEEETTEEEEEEEE----------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             cccccceeEeeecCCcEEEEeec----------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence                 235666654435554432                56789998666666799999999999999987642222111


Q ss_pred             CCCCcceEEEEeeeeecceEeeeccCCcceEEeecCC
Q 011435          230 SISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQ  266 (486)
Q Consensus       230 ~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~  266 (486)
                      .     ...+-.....|...++..+..|+++++....
T Consensus       188 ~-----~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         188 A-----EVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             C-----EEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             e-----EEEeccCcccccccceEEcCCCCEEeeeeCC
Confidence            0     1111112223444444557888888887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.23  E-value=6.1e-05  Score=68.07  Aligned_cols=129  Identities=17%  Similarity=0.308  Sum_probs=90.9

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++...+.++.++..|.    .|.+|++++||+ |||++..+++|.++|..+..  ....+..                
T Consensus        15 ~v~D~~t~~~~~~i~~g~----~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~----------------   72 (301)
T d1l0qa2          15 SVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPA----------------   72 (301)
T ss_dssp             EEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEEC----------------
T ss_pred             EEEECCCCeEEEEEECCC----CceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeec----------------
Confidence            457888888888776553    499999999998 89999999999999986432  1122211                


Q ss_pred             ccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435          133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD  208 (486)
                       ...|.+++++++|. ++++...+..+..++...   +..+...                 ..|..+++......++++.
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          73 -GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------------KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEE
T ss_pred             -cccccccccccccccccccccccceeeecccccceeeeecccc-----------------ccceEEEeecCCCeeeeee
Confidence             12589999999998 888888888898888765   2333221                 2355666433344577777


Q ss_pred             CCCCeEEEEECCCC
Q 011435          209 RGNAALRQISLNQD  222 (486)
Q Consensus       209 ~gn~rIr~id~~G~  222 (486)
                      ..+..+..++....
T Consensus       135 ~~~~~~~~~~~~~~  148 (301)
T d1l0qa2         135 NGDKTVSVINTVTK  148 (301)
T ss_dssp             TTTTEEEEEETTTT
T ss_pred             ccccceeeeecccc
Confidence            77777887777643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.16  E-value=2.7e-05  Score=70.51  Aligned_cols=100  Identities=19%  Similarity=0.274  Sum_probs=73.6

Q ss_pred             eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435           87 ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus        87 ~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                      .+||++..++.|.++|.+...   ....+..     |           ..|.+|+++++|+ |||++..+++|+++|...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~---~~~~i~~-----g-----------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNK---VTATIPV-----G-----------SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTE---EEEEEEC-----S-----------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECCCCe---EEEEEEC-----C-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            489999999999999986432   1111110     1           2699999999998 899999999999999765


Q ss_pred             ---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435          166 ---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       166 ---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~  222 (486)
                         +.++...                 ..|.++++......++++...+..+..++....
T Consensus        64 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          64 NNVIATVPAG-----------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             TEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             Cceeeeeecc-----------------ccccccccccccccccccccccceeeecccccc
Confidence               4454332                 247788755555578899999999999988754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.09  E-value=2.8e-05  Score=76.64  Aligned_cols=117  Identities=10%  Similarity=0.093  Sum_probs=78.2

Q ss_pred             ccceeEEE--ccCCe--EEEEEC--CCCEEE--EEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCC
Q 011435           75 VVPYKIRV--SEDGE--LFAVDE--VNSNIV--KITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG  146 (486)
Q Consensus        75 ~~P~GlAV--d~dG~--LYVaD~--~n~rI~--kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG  146 (486)
                      ..|+||.+  +.||.  |||++.  .+.+|-  +++.++.    ..+..+..           ....+..|++|++..+|
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~----~l~~~~~v-----------~~~~~~~pNDv~~~~~g  161 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLHLKTI-----------RHKLLPSVNDIVAVGPE  161 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEEEEEE-----------CCTTCSSEEEEEEEETT
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC----eEEEEeec-----------CCccccCccceEEecCC
Confidence            47999977  45665  888875  445554  4444322    22333321           12357789999999999


Q ss_pred             CEEEEeCC-----------------CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          147 NLYVADTL-----------------NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       147 ~LYVAD~~-----------------n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      .+|++|..                 ...|..++.+....++.                .+..|+||++..+...|||+++
T Consensus       162 ~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~----------------~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         162 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE----------------GFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE----------------EESSEEEEEECTTSSEEEEEEG
T ss_pred             CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC----------------CCCccceeEECCCCCEEEEEeC
Confidence            99999732                 23455555544444433                2678999985444458999999


Q ss_pred             CCCeEEEEECCCC
Q 011435          210 GNAALRQISLNQD  222 (486)
Q Consensus       210 gn~rIr~id~~G~  222 (486)
                      ..++|+++++++.
T Consensus       226 ~~~~i~~y~~~~~  238 (340)
T d1v04a_         226 LAHKIHVYEKHAN  238 (340)
T ss_dssp             GGTEEEEEEECTT
T ss_pred             CCCeEEEEEeCCC
Confidence            9999999998864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.07  E-value=4.3e-05  Score=74.89  Aligned_cols=132  Identities=17%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      ..|+++++++||+ ||++|.+.++|++++.+..  +....+........|           ..|.+|+++++|+ +||++
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~~~~g-----------~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDAPDPG-----------DHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEECSSTT-----------CCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCC--CceeeccceeecCCC-----------CceEEEEECCCCceEEEec
Confidence            3579999999998 9999999999888754321  112211111001111           2699999999998 89999


Q ss_pred             CCCCEEEEEcCCC-----ceEEcCCCCCCCCcC-CCCccccccCCCceeEEEcCCC-eEEEEeCCCCe-----EEEEECC
Q 011435          153 TLNLAIRKIGDAG-----VTTIAGGKSNVAGFR-DGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAA-----LRQISLN  220 (486)
Q Consensus       153 ~~n~rIrkid~~G-----v~tiaGg~~g~~G~~-DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~r-----Ir~id~~  220 (486)
                      ...+.|..++.+.     +..+........+.. ...........+.+|+ +.++| .|||++++++.     |..++.+
T Consensus       212 e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE-ECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            9999998887543     112111000001111 1111122334567787 45666 79999876544     6666654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4.1e-05  Score=70.50  Aligned_cols=118  Identities=9%  Similarity=0.011  Sum_probs=78.5

Q ss_pred             cceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435           76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      .|.+|++++||+ ||++....++|..++.+...  ....+.+..             ..-..|.+|++++||+ |||++.
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~--~~~~~~~~~-------------~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAES-------------ALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEE-------------ECSSCCSEEEECTTSSEEEEEET
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC--CcEEEeeec-------------ccCCCceEEEEcCCCCEEeeccc
Confidence            489999999998 89999888888776544221  122222210             0123699999999998 999999


Q ss_pred             CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          154 LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       154 ~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .+..|..++.+.  ........             ..-..|.++++......+++++.....|..++...
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVV-------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEE-------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCceeeeccccccceeccccc-------------CCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            888888776544  11111100             01124677774444446899999999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.81  E-value=7.7e-05  Score=68.44  Aligned_cols=104  Identities=9%  Similarity=-0.043  Sum_probs=69.6

Q ss_pred             eEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCCE
Q 011435           79 KIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLA  157 (486)
Q Consensus        79 GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~r  157 (486)
                      |+|++++|+.+++-...+.|.++|.+....  ..++.-.    .+           ..|.+|++++||. |||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~--~~t~~~~----~~-----------~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTV--YKSCVMP----DK-----------FGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE--EEEEECS----SC-----------CSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCE--EEEEEcC----CC-----------CCcceEEECCCCCEEEEEECCCCc
Confidence            678889999888777778999999975321  1111110    00           1589999999998 8999999999


Q ss_pred             EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      |..+|...   +.++....          ........|.++++..+...|||++.
T Consensus        64 v~~~d~~t~~~~~~~~~~~----------~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSS----------VPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEETTTTEEEEEEESCC----------STTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             EEEEeCccCeeeeeecccc----------cccccCCceEEEEEecCCCEEEEEec
Confidence            99999766   33333221          11123446888985444447888874

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.81  E-value=0.00012  Score=74.42  Aligned_cols=44  Identities=9%  Similarity=0.285  Sum_probs=36.9

Q ss_pred             CCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCC
Q 011435           60 NGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLS  106 (486)
Q Consensus        60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~  106 (486)
                      .++.+++++++   +..|.+|++.+||+|||++...++|++++.++.
T Consensus        15 ~~f~~~~ia~~---L~~P~~la~~pdg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          15 ENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             TTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCcEEEEEECC---CCCceEEEEeCCCeEEEEEecCCEEEEEECCCC
Confidence            45778888876   457999999999999999987889999987643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.76  E-value=8e-05  Score=73.24  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=67.7

Q ss_pred             cCccceeEEEccCCeEEEEEC-----------------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435           73 IGVVPYKIRVSEDGELFAVDE-----------------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN  135 (486)
Q Consensus        73 ~~~~P~GlAVd~dG~LYVaD~-----------------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln  135 (486)
                      ....|++|++..+|.+|+++.                 ..+.|+.++..     ..++++.                .|.
T Consensus       148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-----~~~~~~~----------------~l~  206 (340)
T d1v04a_         148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAE----------------GFD  206 (340)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-----CEEEEEE----------------EES
T ss_pred             cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-----ceEEEcC----------------CCC
Confidence            347899999999999999963                 12355566543     2334433                266


Q ss_pred             CcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc-CCCeEEEEe
Q 011435          136 HPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-PTCSLLVID  208 (486)
Q Consensus       136 ~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd-~~G~LYVaD  208 (486)
                      .|+||++++|++ ||||++...+|++++.++   ++...--  ..            -..|.+|. +| .+|.+|++-
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~--~l------------~~~pDNi~-~d~~~g~lwva~  269 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SF------------DTLVDNIS-VDPVTGDLWVGC  269 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EC------------SSEEEEEE-ECTTTCCEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe--cC------------CCCCCccE-EecCCCEEEEEE
Confidence            899999999987 999999999999987554   2221100  00            01366676 55 578899985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00033  Score=64.14  Aligned_cols=103  Identities=10%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             eEEEEECCCCEEEEEcCCCCcccccEEE--ecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEEEc-
Q 011435           87 ELFAVDEVNSNIVKITPPLSQYSRGRLV--AGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIG-  162 (486)
Q Consensus        87 ~LYVaD~~n~rI~kid~~g~~~~~~~~v--aG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid-  162 (486)
                      .|||+....+.|++++.+...  ....+  ...                -..|.+|++++||+ |||+...+++|+.++ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~--~l~~~~~~~~----------------~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEG--ALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTS--CEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCC--CeEEEEEEcC----------------CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            589999999999988865321  12221  121                12689999999998 999999888888765 


Q ss_pred             -CCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435          163 -DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       163 -~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G  221 (486)
                       .++ ..++.+..             ..-..|.+++ ++++| .||+++.++..|+.++...
T Consensus        67 ~~~~~~~~~~~~~-------------~~~~~p~~l~-~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          67 APDDGALTFAAES-------------ALPGSLTHIS-TDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CTTTCCEEEEEEE-------------ECSSCCSEEE-ECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             eCCCCcEEEeeec-------------ccCCCceEEE-EcCCCCEEeecccCCCceeeecccc
Confidence             333 33332210             1123588898 55665 6999999999998887664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.73  E-value=0.00017  Score=70.58  Aligned_cols=138  Identities=14%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccC-CccccC-CCCccccccCCcceEEEcCCCC-EE
Q 011435           74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQ-GYTGHV-DGKPNEARFNHPKGVTMDDKGN-LY  149 (486)
Q Consensus        74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~-G~~G~~-dG~~~~a~Ln~P~GIavD~dG~-LY  149 (486)
                      +..|.++++++||+ +||+....+.|.+++.+......... .+... ...+.. ...........|.+|+++++|. ||
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEE-eeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            46799999999998 89999999999888766432111111 11100 000000 0111123345678999999998 99


Q ss_pred             EEeCCCCE-----EE--EEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435          150 VADTLNLA-----IR--KIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN  220 (486)
Q Consensus       150 VAD~~n~r-----Ir--kid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~  220 (486)
                      |+.++.+.     |.  +++.+| +........          ....-..|.++++.+.+| .|||++..++.|..++.+
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~----------~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP----------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE----------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeE----------EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            99865332     44  444555 322111000          001123588998544355 599999999999999877


Q ss_pred             CC
Q 011435          221 QD  222 (486)
Q Consensus       221 G~  222 (486)
                      ++
T Consensus       341 ~~  342 (365)
T d1jofa_         341 DE  342 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0024  Score=63.30  Aligned_cols=140  Identities=8%  Similarity=0.033  Sum_probs=87.8

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCccccc-EEEecccCCccccCCCCccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRG-RLVAGSFQGYTGHVDGKPNE  131 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~-~~vaG~~~G~~G~~dG~~~~  131 (486)
                      .+++...+.++.++..|.    .|+++++++||+ ||+++. .+.|.+++.++...... .+-.|               
T Consensus        45 ~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~---------------  104 (432)
T d1qksa2          45 ALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG---------------  104 (432)
T ss_dssp             EEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC---------------
T ss_pred             EEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecC---------------
Confidence            346777888888887664    499999999998 787764 56899999764321111 11111               


Q ss_pred             cccCCcceEEEc----CCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe
Q 011435          132 ARFNHPKGVTMD----DKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS  203 (486)
Q Consensus       132 a~Ln~P~GIavD----~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~  203 (486)
                         ..|.+++++    +||+ |||+....+.|+.+|..+   +.++.+.....    +. ..-..-..+..|++..+...
T Consensus       105 ---~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~----~~-~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         105 ---SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY----DE-QEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             ---SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT----TT-CCEESCCCEEEEEECSSSSE
T ss_pred             ---CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc----cc-eeccCCCceeEEEECCCCCE
Confidence               246777765    4898 899999899999999765   34443321100    00 00001112344553333446


Q ss_pred             EEEEeCCCCeEEEEECCC
Q 011435          204 LLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       204 LYVaD~gn~rIr~id~~G  221 (486)
                      ++|+....+.|..++...
T Consensus       177 ~~vs~~~~~~i~~~d~~~  194 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTD  194 (432)
T ss_dssp             EEEEETTTTEEEEEETTC
T ss_pred             EEEEEccCCeEEEEEccC
Confidence            788888889999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.0019  Score=58.49  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++...+..+.++..... +..|.+|++++||+ |||+...++.|.++|.....   ........   .       ...
T Consensus        14 ~v~D~~s~~~~~~i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~---~~~~~~~~---~-------~~~   79 (337)
T d1pbyb_          14 VVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE---TLGRIDLS---T-------PEE   79 (337)
T ss_dssp             EEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC---EEEEEECC---B-------TTE
T ss_pred             EEEECCCCeEEEEEECCCC-CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecC---C-------Ccc
Confidence            4578888888887754322 34699999999997 78999989999999987532   22111100   0       011


Q ss_pred             ccCCcceEEEcCCCC-EEEEeC
Q 011435          133 RFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ....|.+++++++|+ +|++..
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEE
T ss_pred             cccceeeEEEcCCCcEEEEeec
Confidence            234688999999998 788764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.39  E-value=0.0016  Score=59.26  Aligned_cols=86  Identities=9%  Similarity=0.101  Sum_probs=59.4

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++...+.++.++.-...  ..|.+|++++||. |||++..++.|..+|.....  ....+...          .....
T Consensus        21 ~v~D~~t~~~~~t~~~~~~--~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~--~~~~~~~~----------~~~~~   86 (346)
T d1jmxb_          21 HVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLS----------SVPGE   86 (346)
T ss_dssp             EEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESC----------CSTTE
T ss_pred             EEEECCCCCEEEEEEcCCC--CCcceEEECCCCCEEEEEECCCCcEEEEeCccCe--eeeeeccc----------ccccc
Confidence            4588888888877643221  2499999999997 89999999999999987432  11111110          00112


Q ss_pred             ccCCcceEEEcCCCC-EEEEeC
Q 011435          133 RFNHPKGVTMDDKGN-LYVADT  153 (486)
Q Consensus       133 ~Ln~P~GIavD~dG~-LYVAD~  153 (486)
                      ....|.++++++||. |||++.
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEE
T ss_pred             cCCceEEEEEecCCCEEEEEec
Confidence            344799999999998 899874

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.30  E-value=0.033  Score=51.51  Aligned_cols=135  Identities=10%  Similarity=-0.051  Sum_probs=79.5

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECC---------CCEEEEEcCCCCcccccEEEecccCCcccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEV---------NSNIVKITPPLSQYSRGRLVAGSFQGYTGH  124 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~---------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~  124 (486)
                      +++.+.|..+.++..+.     +.++++++||. ||++...         .+.|..+|..+..   .......       
T Consensus        51 v~D~~tg~~~~~~~~~~-----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~~-------  115 (373)
T d2madh_          51 VLDAGSGSILGHVNGGF-----LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIEL-------  115 (373)
T ss_pred             EEECCCCCEEEEEeCCC-----CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc---EEEEEec-------
Confidence            46677888887765543     34799999998 7887643         3567777776432   1111110       


Q ss_pred             CCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC
Q 011435          125 VDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC  202 (486)
Q Consensus       125 ~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G  202 (486)
                       ...........|.+++++++|. +||+... .+.+..++........                 ....|.++++.....
T Consensus       116 -~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~g~  177 (373)
T d2madh_         116 -PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ-----------------LLSSPTCYHIHPGAP  177 (373)
T ss_pred             -CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE-----------------EeccceeEEEecCCC
Confidence             0001122345789999999887 7777643 3455555544411111                 122355666444444


Q ss_pred             eEEEEeCCCCeEEEEECCCC
Q 011435          203 SLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       203 ~LYVaD~gn~rIr~id~~G~  222 (486)
                      .+|++...++.+..++....
T Consensus       178 ~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         178 STFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             cEEEEEcCCCeEEEEEcCCc
Confidence            67788888888888877653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.21  E-value=0.0037  Score=63.37  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=81.3

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEE------------------EEcCCCCcccccEEE
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIV------------------KITPPLSQYSRGRLV  114 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~------------------kid~~g~~~~~~~~v  114 (486)
                      +++++..+.+...+.-.+  +..|+|++++++|+ +||+....+.+-                  .+|..+... ...+.
T Consensus        97 avIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-~~qI~  173 (441)
T d1qnia2          97 ARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-AWQVI  173 (441)
T ss_dssp             EEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-EEEEE
T ss_pred             EEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee-eEEEe
Confidence            446666666655443211  23599999999998 798876555442                  234332110 00111


Q ss_pred             ecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEEEc----------------------CCC-ceEEc
Q 011435          115 AGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIG----------------------DAG-VTTIA  170 (486)
Q Consensus       115 aG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid----------------------~~G-v~tia  170 (486)
                      ++                  ..|.+++++++|. +|++..+.+.+..++                      ++| ...+.
T Consensus       174 v~------------------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         174 VD------------------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             ES------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             cC------------------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence            11                  2689999999998 888886644333222                      112 11111


Q ss_pred             CCCCCCCCcCCCCcccc------ccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCCCcee
Q 011435          171 GGKSNVAGFRDGPSEDA------KFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQDDCE  225 (486)
Q Consensus       171 Gg~~g~~G~~DG~~~~a------~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G~~~~  225 (486)
                      +.  +..- .++.....      .=.+|.|++ ++++| .|||+....+.|.+|+.+...+.
T Consensus       236 ~~--~v~v-vd~~~~~~v~~~IPvgksPhGv~-vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         236 DS--KVPV-VDGRGESEFTRYIPVPKNPHGLN-TSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             TC--CCCE-EECSSSCSSEEEECCBSSCCCEE-ECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             CC--CcEE-EEcccCCceEEEEeCCCCccCce-ECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence            10  0000 01100000      013699998 56666 58999999999999998754333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.012  Score=56.97  Aligned_cols=141  Identities=9%  Similarity=0.021  Sum_probs=85.8

Q ss_pred             cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435           54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA  132 (486)
Q Consensus        54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a  132 (486)
                      .+++...+..+.++..|.    .|.+|+++|||+ ||+++. .+.|.++|.++..   ...++--              .
T Consensus        45 ~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~---~~~~~~i--------------~  102 (426)
T d1hzua2          45 ALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGR-DARIDMIDLWAKE---PTKVAEI--------------K  102 (426)
T ss_dssp             EEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEET-TSEEEEEETTSSS---CEEEEEE--------------E
T ss_pred             EEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeC-CCCEEEEEccCCc---eeEEEEE--------------e
Confidence            347788888888877654    499999999999 677764 5689999987543   1111100              0


Q ss_pred             ccCCcceEEEc----CCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeE
Q 011435          133 RFNHPKGVTMD----DKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSL  204 (486)
Q Consensus       133 ~Ln~P~GIavD----~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~L  204 (486)
                      ....|.+++++    +||+ ||++...++.|+.+|...   +..+.+.........  .   ..-..+..++.......+
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT--Y---HPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC--E---ESCCCEEEEEECSSSSEE
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcccee--e---cCCCceeEEEECCCCCEE
Confidence            11246677665    4788 789988889999998765   333333211000000  0   000112345544455578


Q ss_pred             EEEeCCCCeEEEEECCC
Q 011435          205 LVIDRGNAALRQISLNQ  221 (486)
Q Consensus       205 YVaD~gn~rIr~id~~G  221 (486)
                      ++++.+++.|..+....
T Consensus       178 ~~~~~~~~~i~~~~~~~  194 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKD  194 (426)
T ss_dssp             EEEETTTTEEEEEECSS
T ss_pred             EEecCCCCeEEEEEecc
Confidence            88888888888777653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.04  E-value=0.0042  Score=58.87  Aligned_cols=95  Identities=7%  Similarity=-0.148  Sum_probs=62.8

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECC---------CCEEEEEcCCCCcccccEEEecccCCcccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEV---------NSNIVKITPPLSQYSRGRLVAGSFQGYTGH  124 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~---------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~  124 (486)
                      +++...+..+.++..+..    | ++++.+||. ||++...         .+.|..+|..+..   ....+....+.   
T Consensus        50 ~~d~~~~~~~~~~~~~~~----~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~---~~~~i~~p~~~---  118 (368)
T d1mdah_          50 VSCAGCGVTLGHSLGAFL----S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PIADIELPDAP---  118 (368)
T ss_dssp             EEETTTTEEEEEEEECTT----C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EEEEEEETTSC---
T ss_pred             EEeCCCCcEEEEEeCCCC----C-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc---EeeeecCCccc---
Confidence            356777777776655432    4 799999997 8887642         3459999987532   21111110000   


Q ss_pred             CCCCccccccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435          125 VDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG  165 (486)
Q Consensus       125 ~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G  165 (486)
                           .......|.+|++++||. |||++...+.|+.+|...
T Consensus       119 -----~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         119 -----RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             -----SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             -----eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                 011123689999999998 999998889999999766

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.90  E-value=0.015  Score=52.12  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=43.3

Q ss_pred             CcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435          136 HPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR  209 (486)
Q Consensus       136 ~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~  209 (486)
                      .|.+|++++||+ |||+...++.|.++|...   +.++....           .......+.++++......||++..
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~-----------~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-----------PEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-----------TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC-----------CcccccceeeEEEcCCCcEEEEeec
Confidence            689999999998 789998899999999765   33332210           1112345678876555557777764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.89  E-value=0.011  Score=54.28  Aligned_cols=142  Identities=13%  Similarity=0.006  Sum_probs=82.7

Q ss_pred             EEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECC---------CCEEEEEcCCCCcccccEEEecccCCcccc
Q 011435           55 VLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEV---------NSNIVKITPPLSQYSRGRLVAGSFQGYTGH  124 (486)
Q Consensus        55 vv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~---------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~  124 (486)
                      +++...|..+.++..|..    | ++++++||+ |||++..         .+.|.++|..+...  ...+... ...   
T Consensus        32 v~D~~tg~~~~~~~~g~~----~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~--~~~~~~~-~~~---  100 (355)
T d2bbkh_          32 VIDGEAGRVIGMIDGGFL----P-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADIELP-DAP---  100 (355)
T ss_dssp             EEETTTTEEEEEEEECSS----C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEET-TCC---
T ss_pred             EEECCCCcEEEEEECCCC----C-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE--EEEEecC-Ccc---
Confidence            467778888887765543    5 799999998 8988642         35788999875321  1111111 000   


Q ss_pred             CCCCccccccCCcceEEEcCCCC-EEEEeCCC-CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc
Q 011435          125 VDGKPNEARFNHPKGVTMDDKGN-LYVADTLN-LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR  199 (486)
Q Consensus       125 ~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n-~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd  199 (486)
                           .......|.+++++++|+ +||++... ..+..++...   +.++..... ...        .....+..+++..
T Consensus       101 -----~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~  166 (355)
T d2bbkh_         101 -----RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHI--------FPTAPDTFFMHCR  166 (355)
T ss_dssp             -----CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEE--------EEEETTEEEEEET
T ss_pred             -----eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc-ceE--------eecCCcceEEEcC
Confidence                 111234799999999998 89998653 5566666654   344432110 000        0011233455444


Q ss_pred             CCCeEEEEeCCCCeEEEEECCC
Q 011435          200 PTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       200 ~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ....+++.......+..++...
T Consensus       167 dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         167 DGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             TSCEEEEECCSSSCCEEEECCC
T ss_pred             CCCEEEEEecCCCeEEEEeccc
Confidence            4456777777777777776553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.41  E-value=0.011  Score=54.16  Aligned_cols=116  Identities=12%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             ceeE-EEccCCe-EEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE
Q 011435           77 PYKI-RVSEDGE-LFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY  149 (486)
Q Consensus        77 P~Gl-AVd~dG~-LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY  149 (486)
                      |..+ |..+||. |||++..    .+.|+.+|.++..     .+. +..  .|            ...++++++||+ ||
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~-----~~~-~~~--~g------------~~~~~a~SpDg~~l~   62 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-----VIG-MID--GG------------FLPNPVVADDGSFIA   62 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-----EEE-EEE--EC------------SSCEEEECTTSSCEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc-----EEE-EEE--CC------------CCCceEEcCCCCEEE
Confidence            4444 3457887 8998853    3469999886432     111 100  11            123799999998 99


Q ss_pred             EEeCC---------CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEE
Q 011435          150 VADTL---------NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQ  216 (486)
Q Consensus       150 VAD~~---------n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~  216 (486)
                      |++..         .+.|+++|...   +.++.....         ........|.++++....+.+||++... ..+..
T Consensus        63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  133 (355)
T d2bbkh_          63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV  133 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC---------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred             EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc---------ceeecCCCCceEEEecCCCeeEEecCCCCceeee
Confidence            98742         35788998766   333332110         0112234678888666666789988654 56666


Q ss_pred             EECCC
Q 011435          217 ISLNQ  221 (486)
Q Consensus       217 id~~G  221 (486)
                      ++...
T Consensus       134 ~~~~~  138 (355)
T d2bbkh_         134 VDLEG  138 (355)
T ss_dssp             EETTT
T ss_pred             eecCC
Confidence            77654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.36  E-value=0.0074  Score=61.12  Aligned_cols=67  Identities=18%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             cceeEEEc--cCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435           76 VPYKIRVS--EDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA  151 (486)
Q Consensus        76 ~P~GlAVd--~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA  151 (486)
                      .|....++  +||. |||+|..+++|.+||.+...   ..-++...              ....|.|++++++|+ +||+
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k---~~~ii~iP--------------~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK---TDKITHIP--------------NVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE---EEEEEECT--------------TCCCEEEEEECCSSBCCEEE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc---EeeEEecC--------------CCCCccceEEeccCCEEEEE
Confidence            36666655  6887 99999999999999987532   22222110              012699999999998 8999


Q ss_pred             eCCCCEEE
Q 011435          152 DTLNLAIR  159 (486)
Q Consensus       152 D~~n~rIr  159 (486)
                      ....+.+.
T Consensus       134 ~~~~~~v~  141 (441)
T d1qnia2         134 CNAEFVIP  141 (441)
T ss_dssp             EEECSCEE
T ss_pred             eccCCccc
Confidence            87666553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.35  E-value=0.056  Score=54.07  Aligned_cols=70  Identities=11%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             ceeEEEccCCeEEEEECC--------------------------------CCEEEEEcCCCCcccccEEEecccCCcccc
Q 011435           77 PYKIRVSEDGELFAVDEV--------------------------------NSNIVKITPPLSQYSRGRLVAGSFQGYTGH  124 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~--------------------------------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~  124 (486)
                      =..|++++||.|||+-..                                .+.|+|++++++...      ++. ...+ 
T Consensus       146 gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~------dnP-~~~~-  217 (450)
T d1crua_         146 SGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK------DNP-SFNG-  217 (450)
T ss_dssp             EEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT------TCC-EETT-
T ss_pred             ccceeEcCCCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccc------ccc-cccc-
Confidence            357999999999997432                                368999998865311      110 0000 


Q ss_pred             CCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435          125 VDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus       125 ~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .....-...+++|.|+++|++|+||++|.+
T Consensus       218 ~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         218 VVSHIYTLGHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             EECSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             ccceEEEeccccccceeecccceeeecccc
Confidence            000112334889999999999999999976

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.29  E-value=0.067  Score=52.36  Aligned_cols=123  Identities=11%  Similarity=-0.021  Sum_probs=81.3

Q ss_pred             ccceeEEEc----cCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435           75 VVPYKIRVS----EDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L  148 (486)
Q Consensus        75 ~~P~GlAVd----~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L  148 (486)
                      ..|.++++.    +||+ ||++....+.|..+|..+..  ...++.+.....    +. .....-..+.+|+++++|. +
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~--~~~~~~~~~~~~----~~-~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTY----DE-QEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECT----TT-CCEESCCCEEEEEECSSSSEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc--ceeeeccCCccc----cc-eeccCCCceeEEEECCCCCEE
Confidence            458888876    4897 88999989999999987543  122222210000    00 0011122456789999887 7


Q ss_pred             EEEeCCCCEEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCCC
Q 011435          149 YVADTLNLAIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       149 YVAD~~n~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G~  222 (486)
                      ||+-...+.|..++...     +.++..+                 ..|.+++ .+++| .+|++....+.|..++....
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-----------------~~~~~~~-~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAE-----------------RFLHDGG-LDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECC-----------------SSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEccc-----------------Cccccce-ECCCCCEEEEeccccceEEEeecccc
Confidence            88888889999998654     2333322                 1377887 56666 48999999999999998864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.99  E-value=0.024  Score=54.75  Aligned_cols=110  Identities=13%  Similarity=-0.051  Sum_probs=69.6

Q ss_pred             cceeEEEccCC--eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435           76 VPYKIRVSEDG--ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD  152 (486)
Q Consensus        76 ~P~GlAVd~dG--~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD  152 (486)
                      .|..+.++.|.  .++|+...++.|..+|..+..  ...++-+      |           ..|.+|++++||+ ||++.
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~--~~~~l~~------g-----------~~~~~vafSPDGk~l~~~~   80 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT------G-----------YAVHISRMSASGRYLLVIG   80 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCS--EEEEEEC------C-----------SSEEEEEECTTSCEEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCc--EEEEEeC------C-----------CCeeEEEECCCCCEEEEEe
Confidence            35666665543  367888899999999987543  1222221      1           1589999999999 88887


Q ss_pred             CCCCEEEEEcCCC--c---eEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCC-eEEEEeCCCCeEEEEECCCC
Q 011435          153 TLNLAIRKIGDAG--V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTC-SLLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       153 ~~n~rIrkid~~G--v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G-~LYVaD~gn~rIr~id~~G~  222 (486)
                      . .+.|+++|.+.  .   ..+..+                 ..|.++++.   .++| .||++...++.|+.++....
T Consensus        81 ~-d~~v~vwd~~t~~~~~~~~i~~~-----------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          81 R-DARIDMIDLWAKEPTKVAEIKIG-----------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             T-TSEEEEEETTSSSCEEEEEEECC-----------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             C-CCCEEEEEccCCceeEEEEEeCC-----------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            6 46899998754  2   222211                 124444421   1244 57788877788888876654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.97  E-value=0.12  Score=47.43  Aligned_cols=116  Identities=10%  Similarity=-0.011  Sum_probs=65.5

Q ss_pred             ceeEEEccCCe-EEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435           77 PYKIRVSEDGE-LFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV  150 (486)
Q Consensus        77 P~GlAVd~dG~-LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV  150 (486)
                      ...+++.+||. ||+++..    ..+|+.+|..+..  ....+.+      |            .+.++++++||. |||
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--~~~~~~~------~------------~~~~~a~SpDG~~l~v   82 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNG------G------------FLPNPVAAHSGSEFAL   82 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--EEEEEeC------C------------CCccEEEcCCCCEEEE
Confidence            36667778876 7777542    2467888765322  1111111      1            233799999998 899


Q ss_pred             EeCCC---------CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEE
Q 011435          151 ADTLN---------LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQI  217 (486)
Q Consensus       151 AD~~n---------~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~i  217 (486)
                      +....         +.|+.+|...   +..+....         .........|.++++......+||.... ++.+..+
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~---------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD---------APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCC---------cceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            87543         5677777665   22332210         0111223457788766666677777643 4556666


Q ss_pred             ECCC
Q 011435          218 SLNQ  221 (486)
Q Consensus       218 d~~G  221 (486)
                      +...
T Consensus       154 ~~~~  157 (373)
T d2madh_         154 VQGG  157 (373)
T ss_pred             eccC
Confidence            5543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.81  E-value=0.14  Score=47.86  Aligned_cols=75  Identities=12%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             eEEEcCCCC-EEEEeCC---------CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEE
Q 011435          139 GVTMDDKGN-LYVADTL---------NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLL  205 (486)
Q Consensus       139 GIavD~dG~-LYVAD~~---------n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LY  205 (486)
                      ++++.+||. |||+...         .+.|+.+|..+   +..+.... .        ........|.++++..+...||
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~-~--------~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD-A--------PRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT-S--------CSCCBSCCTTSEEECTTSSCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc-c--------ceecccCCccceEECCCCCEEE
Confidence            799999998 9998742         35699999876   22332110 0        0001123588898554444799


Q ss_pred             EEeCCCCeEEEEECCCC
Q 011435          206 VIDRGNAALRQISLNQD  222 (486)
Q Consensus       206 VaD~gn~rIr~id~~G~  222 (486)
                      |++...+.|+.+++...
T Consensus       140 va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             EEECSSSCEEEEEETTT
T ss_pred             EEeCCCCeEEEEECCCC
Confidence            99998899999998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.46  E-value=0.45  Score=41.84  Aligned_cols=108  Identities=12%  Similarity=0.024  Sum_probs=66.5

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ...|+++++|+++++-..++.|..++.....  ....+...              .....-..++++++|++.++=..++
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~--------------~~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHD--------------NIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCT--------------TCCSCEEEEEECSSSCEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeecccc--cccccccc--------------cccCceEEEEECCCCCEEEEEECCC
Confidence            4788999999977776677788888875321  11111110              0112346789999999777666678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI  217 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i  217 (486)
                      .|+.+|...   +.++.+-.                ..-..++ ..+++.++++-..++.|+..
T Consensus       293 ~i~iwd~~~~~~~~~~~~H~----------------~~V~~l~-~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGHD----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CEEEEETTTCCEEEEECCCS----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCC----------------CCEEEEE-EeCCCCEEEEEccCCEEEEe
Confidence            899998654   45554320                1124565 46677666665566667664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.28  E-value=0.39  Score=44.59  Aligned_cols=115  Identities=12%  Similarity=0.021  Sum_probs=66.7

Q ss_pred             cc-eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435           76 VP-YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL  154 (486)
Q Consensus        76 ~P-~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~  154 (486)
                      .| ..+++++||+++++-..++.|..++.++........+-|.        .        ..-+.|+++++|++.++=..
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH--------~--------~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--------N--------GQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--------S--------SCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC--------C--------CCEEEEEECCCCCEEEEEEC
Confidence            35 7899999999887777788888888764321112222221        1        12468999999996554444


Q ss_pred             CCEEEEEcCCC--ce-EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          155 NLAIRKIGDAG--VT-TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       155 n~rIrkid~~G--v~-tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      ++.|+..|.+.  .. .+.-..              .-.....++ ..++++.+++-..++.|+.++.+.
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~--------------~~~~v~~i~-~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILR--------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCC--------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CCeEEEEeeccccccccccccc--------------ccccccccc-cccccccceeecccCcceeeeeec
Confidence            56777776543  21 211100              001234565 456676666666667666665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.23  E-value=0.37  Score=43.10  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             CcceEEEcCCCC-EEE-EeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435          136 HPKGVTMDDKGN-LYV-ADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       136 ~P~GIavD~dG~-LYV-AD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      ....+++++||+ |++ ++.....|+.+|.++  +..+.+.                -.....++ ..++|..+++-...
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~----------------~~~v~~~~-~spdg~~l~~~~~~  106 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN----------------LGNVFAMG-VDRNGKFAVVANDR  106 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC----------------CCSEEEEE-ECTTSSEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC----------------CceEEeee-ecccccccceeccc
Confidence            457899999997 444 444445677888666  4443322                11234565 56777777777777


Q ss_pred             CeEEEEECCCC
Q 011435          212 AALRQISLNQD  222 (486)
Q Consensus       212 ~rIr~id~~G~  222 (486)
                      +.++.++.++.
T Consensus       107 ~~~~~~~~~~~  117 (360)
T d1k32a3         107 FEIMTVDLETG  117 (360)
T ss_dssp             SEEEEEETTTC
T ss_pred             ccccccccccc
Confidence            78888887764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.7  Score=41.91  Aligned_cols=106  Identities=10%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      ...++++++|+++++-..++.|..++.+...   .....+.                -..-+.|+++++|+++++=..++
T Consensus       227 i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~----------------~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEcccccccceeccccccccccccccc---ccccccc----------------ccccceEEECCCCCEEEEEeCCC
Confidence            4678888888866665566778888876322   1111110                11346899999999777655678


Q ss_pred             EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435          157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL  219 (486)
Q Consensus       157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~  219 (486)
                      .|+.+|...   +.++...                 .....++ ..++++++++-..++.|+.+++
T Consensus       288 ~i~iwd~~~~~~~~~~~~~-----------------~~v~~~~-~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         288 LLNAWRTPYGASIFQSKES-----------------SSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTTCCEEEEEECS-----------------SCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEccCC-----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEEE
Confidence            899888654   3333211                 1234565 5677777777667777877764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.38  E-value=0.97  Score=40.13  Aligned_cols=71  Identities=10%  Similarity=0.047  Sum_probs=47.5

Q ss_pred             cceeEEEccCCe-EEEEE-CCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435           76 VPYKIRVSEDGE-LFAVD-EVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        76 ~P~GlAVd~dG~-LYVaD-~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      ...++++++||+ |+++. ...+.|+.++..+..   ...+.+.                -.....++++++|+..++-.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~----------------~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---AEKFEEN----------------LGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---EEECCCC----------------CCSEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---EEEeeCC----------------CceEEeeeecccccccceec
Confidence            368899999998 44443 333467777776432   2222221                12457899999999777666


Q ss_pred             CCCEEEEEcCCC
Q 011435          154 LNLAIRKIGDAG  165 (486)
Q Consensus       154 ~n~rIrkid~~G  165 (486)
                      ..+.|+.++.++
T Consensus       105 ~~~~~~~~~~~~  116 (360)
T d1k32a3         105 DRFEIMTVDLET  116 (360)
T ss_dssp             TTSEEEEEETTT
T ss_pred             cccccccccccc
Confidence            778899888776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.25  E-value=0.98  Score=39.53  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=68.8

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....+++.++|+++++-..++.|..++..+...........                 -...+.|+++++|+++++-..+
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH-----------------PAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC-----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccccccc
Confidence            45778888999877776677888888865322111111111                 1135789999999866555557


Q ss_pred             CEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          156 LAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       156 ~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      +.|+.+|...-..+.-.. ...+.         -..-..++ ..+++.++++-..++.|+.++++.
T Consensus       201 ~~i~~~~~~~~~~~~~~~-~~~~h---------~~~v~~l~-~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         201 RKVIPYSVANNFELAHTN-SWTFH---------TAKVACVS-WSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SCEEEEEGGGTTEESCCC-CCCCC---------SSCEEEEE-ECTTSSEEEEEETTSCEEEEETTC
T ss_pred             cccccccccccccccccc-ccccc---------cccccccc-ccccccceEEEcCCCEEEEEECCC
Confidence            788888754311111000 00000         01124565 567777777666778899988764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.21  E-value=2.7  Score=36.42  Aligned_cols=134  Identities=15%  Similarity=0.225  Sum_probs=73.5

Q ss_pred             CCCcE--EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCC
Q 011435           51 ADGNV--LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGK  128 (486)
Q Consensus        51 ~~gsv--v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~  128 (486)
                      .++.+  .+...|....++..+..  ..-.++++.++|.++++.. .+.|..++..+........+              
T Consensus        32 ~Dg~v~vWd~~~~~~~~~~~~~h~--~~v~~v~~~~~g~~~~~~~-d~~v~~~~~~~~~~~~~~~~--------------   94 (299)
T d1nr0a2          32 AEGHINSWDISTGISNRVFPDVHA--TMITGIKTTSKGDLFTVSW-DDHLKVVPAGGSGVDSSKAV--------------   94 (299)
T ss_dssp             TTSCEEEEETTTCCEEECSSCSCS--SCEEEEEECTTSCEEEEET-TTEEEEECSSSSSSCTTSCC--------------
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCC--CcEEEEEeeccceeecccc-eeeEEEeccCCccccccccc--------------
Confidence            34444  45556665555443322  1236889999999888765 46788887653221000000              


Q ss_pred             ccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435          129 PNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID  208 (486)
Q Consensus       129 ~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD  208 (486)
                       ....-..+..+++.++|.+.++... +.|..++......+....                 ....++ ..+++.++++-
T Consensus        95 -~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~~~~~~~~~~-----------------~~~~~~-~s~~~~~l~~g  154 (299)
T d1nr0a2          95 -ANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHGKLTEVPISY-----------------NSSCVA-LSNDKQFVAVG  154 (299)
T ss_dssp             -EEECSSCEEEEEECTTSSCEEEEES-SEEEEEETTEEEEEECSS-----------------CEEEEE-ECTTSCEEEEE
T ss_pred             -ccccccccccccccccccccccccc-cccccccccccccccccc-----------------cccccc-ccccccccccc
Confidence             0111235789999999987666543 567777755432222110                 112343 45556555555


Q ss_pred             CCCCeEEEEECCC
Q 011435          209 RGNAALRQISLNQ  221 (486)
Q Consensus       209 ~gn~rIr~id~~G  221 (486)
                      ..++.|+.++..+
T Consensus       155 ~~dg~i~~~d~~~  167 (299)
T d1nr0a2         155 GQDSKVHVYKLSG  167 (299)
T ss_dssp             ETTSEEEEEEEET
T ss_pred             ccccccccccccc
Confidence            5566777777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.23  E-value=2.4  Score=38.29  Aligned_cols=83  Identities=19%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..++++++|+++++-...+.|..++.....  ....+-....-..|+         -..-..|+++++|++.++=..++
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h---------~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccCcccccccccccccccccccccccc--ccccccccccccccc---------cccccccccCCCCCEEEEEeCCC
Confidence            3688999999877766566778888765321  111111100000111         11235889999999666655567


Q ss_pred             EEEEEcCCC---ceEEc
Q 011435          157 AIRKIGDAG---VTTIA  170 (486)
Q Consensus       157 rIrkid~~G---v~tia  170 (486)
                      .|+.+|...   +.++-
T Consensus       261 ~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         261 TIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEE
Confidence            899988654   45553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.18  E-value=1.8  Score=41.74  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEc----CCCCEE
Q 011435           75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD----DKGNLY  149 (486)
Q Consensus        75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~LY  149 (486)
                      ..++|+++|. ++.|||++- +-.|++++.+-.......++... .+  +        .-..-|.||++=    .+|.|+
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~-~g--~--------~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRA-DG--R--------HLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEEC-SS--S--------SCCSCEEEEEEEECGGGCEEEE
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecc-cC--c--------cccCCccccEEEEcCCCCeEEE
Confidence            5689999997 578999986 45899997653221122332221 00  0        013368999863    356799


Q ss_pred             EEeCCCCEEEEEcCCC
Q 011435          150 VADTLNLAIRKIGDAG  165 (486)
Q Consensus       150 VAD~~n~rIrkid~~G  165 (486)
                      |++.++++..+++..+
T Consensus       248 vSsQG~n~f~vydr~~  263 (353)
T d1h6la_         248 ASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCeEEEEecCC
Confidence            9999999999998765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.17  E-value=1  Score=43.43  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CcceEEEcCC-CCEEEEeCCCCEEEEEcCC--C---ceEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCCeEEE
Q 011435          136 HPKGVTMDDK-GNLYVADTLNLAIRKIGDA--G---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLV  206 (486)
Q Consensus       136 ~P~GIavD~d-G~LYVAD~~n~rIrkid~~--G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G~LYV  206 (486)
                      .+.|+++|.+ +.|||++. +..|++++.+  +   ...+.... +  +   .     -..-|-||++.   +.+|.|++
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~-g--~---~-----l~~D~EGlaiy~~~~~~Gyliv  248 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD-G--R---H-----LTPDIEGLTIYYAADGKGYLLA  248 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS-S--S---S-----CCSCEEEEEEEECGGGCEEEEE
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc-C--c---c-----ccCCccccEEEEcCCCCeEEEE
Confidence            6789999984 56999997 5689999743  2   12221110 0  0   0     01235677754   34678999


Q ss_pred             EeCCCCeEEEEECCC
Q 011435          207 IDRGNAALRQISLNQ  221 (486)
Q Consensus       207 aD~gn~rIr~id~~G  221 (486)
                      ++-++++...++..+
T Consensus       249 SsQG~n~f~vydr~~  263 (353)
T d1h6la_         249 SSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEGGGTEEEEEESST
T ss_pred             EcCCCCeEEEEecCC
Confidence            999999999999765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.31  E-value=2.7  Score=41.74  Aligned_cols=90  Identities=11%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCc-eEEcCCCCCCCCcCCCCcccccc-CCCceeEEEcCCCeEEEEeCCC
Q 011435          135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGV-TTIAGGKSNVAGFRDGPSEDAKF-SNDFDVVYVRPTCSLLVIDRGN  211 (486)
Q Consensus       135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv-~tiaGg~~g~~G~~DG~~~~a~f-~~P~gIa~vd~~G~LYVaD~gn  211 (486)
                      ++|.|+.+++||. +||+....+.+-+||-.-+ ..+++....    .+....+..+ -.|...+ .|..|+.|.+-.-.
T Consensus       275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~----~~~~~~e~elglgPLht~-fd~~g~aytslfid  349 (459)
T d1fwxa2         275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP----RSAVVAEPELGLGPLHTA-FDGRGNAYTSLFLD  349 (459)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-G----GGGEEECCBCCSCEEEEE-ECTTSEEEEEETTT
T ss_pred             CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCc----cccEEeecccCcCccccc-cCCCceEEEEeecc
Confidence            6899999999999 9999998999999986431 111111000    0000000001 2477777 47789999999999


Q ss_pred             CeEEEEECCCCceeeccc
Q 011435          212 AALRQISLNQDDCEYQYN  229 (486)
Q Consensus       212 ~rIr~id~~G~~~~~~~~  229 (486)
                      .+|.+.+.+.....+.+.
T Consensus       350 s~v~kw~~~~~~~~~~~~  367 (459)
T d1fwxa2         350 SQVVKWNIEDAIRAYAGE  367 (459)
T ss_dssp             TEEEEEEHHHHHHHHHTC
T ss_pred             ceEEEEecchhhhhhccc
Confidence            999999986544444333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=3.8  Score=36.64  Aligned_cols=72  Identities=8%  Similarity=-0.053  Sum_probs=45.0

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      .+|++.+||+++++-..++.|..++...........+.+.                -..-..+++++++.++++-..+..
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~d~~  164 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS----------------APACYALAISPDSKVCFSCCSDGN  164 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS----------------SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEcCCCCEEEEeecccccccccccccccccccccccc----------------cccccccccccccccccccccccc
Confidence            5789999999777666678898888653210001111111                112357788888887776666778


Q ss_pred             EEEEcCCC
Q 011435          158 IRKIGDAG  165 (486)
Q Consensus       158 Irkid~~G  165 (486)
                      |+.++...
T Consensus       165 i~~~~~~~  172 (337)
T d1gxra_         165 IAVWDLHN  172 (337)
T ss_dssp             EEEEETTT
T ss_pred             cccccccc
Confidence            88887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.88  E-value=3.6  Score=37.92  Aligned_cols=132  Identities=12%  Similarity=0.043  Sum_probs=70.9

Q ss_pred             cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435           76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN  155 (486)
Q Consensus        76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n  155 (486)
                      ....+++.+||.| ++-..++.|..++.....  ....+-.. ....|+         -..-+.|+++++|++.++=...
T Consensus       186 ~~~~v~~s~dg~l-asgs~Dg~i~iwd~~~~~--~~~~~~~~-~~l~~h---------~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         186 FATSVDISERGLI-ATGFNNGTVQISELSTLR--PLYNFESQ-HSMINN---------SNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             CCCEEEECTTSEE-EEECTTSEEEEEETTTTE--EEEEEECC-C---CC---------CCCEEEEEECSSTTEEEEEEEE
T ss_pred             cEEEEEECCCCEE-EEEeCCCcEEEEeecccc--cccccccc-cccccc---------cceEEEcccccccceeeeecCC
Confidence            3567888888844 555677889999876422  11111110 000111         1234689999999966664332


Q ss_pred             ---CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435          156 ---LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC  224 (486)
Q Consensus       156 ---~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~  224 (486)
                         ..|+.+|...   +.++.......   .......+.-..-+.|+ ..++|+++++-..++.|+..+.....|
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~---~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSLSVPTHSS---QASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCcceeeecccccceeeeeeccccccc---cceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCE
Confidence               3577777543   44443211000   00000001111224566 577888888888899999999875433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.79  E-value=5.8  Score=34.15  Aligned_cols=70  Identities=10%  Similarity=0.050  Sum_probs=44.7

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       137 P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      .+.|+++++|+++++=..++.|+.++...   +.++....              ....-..++ ..+++.++++-..++.
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~-~s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--------------IICGITSVS-FSKSGRLLLAGYDDFN  293 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------------CCSCEEEEE-ECSSSCEEEEEETTSC
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc--------------ccCceEEEE-ECCCCCEEEEEECCCE
Confidence            46899999998666655678888888665   23332210              001123454 5677777777777788


Q ss_pred             EEEEECCC
Q 011435          214 LRQISLNQ  221 (486)
Q Consensus       214 Ir~id~~G  221 (486)
                      |+.++...
T Consensus       294 i~iwd~~~  301 (340)
T d1tbga_         294 CNVWDALK  301 (340)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            88888764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.42  E-value=3.9  Score=36.72  Aligned_cols=113  Identities=10%  Similarity=-0.029  Sum_probs=62.7

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC--
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL--  154 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~--  154 (486)
                      -..+++.++|+++++-...+.|..++...........+.+.                -.....|+++++|+++++-..  
T Consensus        61 v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----------------SGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----------------SSCEEEEEECTTSCEEEEEECCS
T ss_pred             EEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccc----------------cCccccccccccccccccccccc
Confidence            47889999999887777778999888764321111122221                013468999999986555332  


Q ss_pred             CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCCC
Q 011435          155 NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQD  222 (486)
Q Consensus       155 n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G~  222 (486)
                      ...+++++.+.   +.++.+.                ......++ ..+++. ++++-..++.|+.++....
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h----------------~~~v~~v~-~~~~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQ----------------ARAMNSVD-FKPSRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCC----------------SSCEEEEE-ECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             ccccccccccccccccccccc----------------cccccccc-ccccceeeeccccccccccccccccc
Confidence            22344444332   2222211                01123455 344443 4555556677777777653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.98  E-value=1.6  Score=40.07  Aligned_cols=116  Identities=12%  Similarity=-0.027  Sum_probs=64.6

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL  156 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~  156 (486)
                      -..|+++++|+++++-..++.|...+.+.... .......      +         .-.....|+++++|+.+++-..++
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~------~---------~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-KPTLVIL------R---------INRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETTEE-EEEEECC------C---------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeeccccc-ccccccc------c---------ccccccccccccccccceeecccC
Confidence            37899999999777665667788877653221 1111111      0         012357899999998555544556


Q ss_pred             EEEEEc--CCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435          157 AIRKIG--DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ  221 (486)
Q Consensus       157 rIrkid--~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G  221 (486)
                      .|+.++  ... ...+.....   +.         -.....++ ..+++.++++-..++.|+.++...
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~---~~---------~~~v~~v~-~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKK---PI---------RSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECT---TC---------CSCEEEEE-ECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cceeeeeeccccccccccccc---cc---------cccccccc-ccccccceeccccCcEEEEEeecc
Confidence            555544  333 111111000   00         01123455 467777777777778888888764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.94  E-value=6.5  Score=35.09  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             ceeEEEccC-CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEc---CCCCEEEEe
Q 011435           77 PYKIRVSED-GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD---DKGNLYVAD  152 (486)
Q Consensus        77 P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD---~dG~LYVAD  152 (486)
                      -..+++.+| |.++++-..++.|..++.....  ....+.+.    ..            ...++.+.   ++|.++++=
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~~----~~------------~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDD----QE------------PVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECCBT----TB------------CCCSCEEEEEESSSSEEEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeecccc--cccccccc----cc------------ccccceeeeeccCCCEEEEE
Confidence            467888886 5677766677788888865321  11122111    00            11222322   567766665


Q ss_pred             CCCCEEEEEcCCC
Q 011435          153 TLNLAIRKIGDAG  165 (486)
Q Consensus       153 ~~n~rIrkid~~G  165 (486)
                      ..++.|+.+|...
T Consensus       270 s~D~~i~iwd~~~  282 (325)
T d1pgua1         270 GADATIRVWDVTT  282 (325)
T ss_dssp             ETTSEEEEEETTT
T ss_pred             eCCCeEEEEECCC
Confidence            6678888888654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.51  E-value=6.2  Score=35.18  Aligned_cols=85  Identities=12%  Similarity=0.041  Sum_probs=45.6

Q ss_pred             ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcc---ccccCCcceEEEcCCCCEEEEeC
Q 011435           77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPN---EARFNHPKGVTMDDKGNLYVADT  153 (486)
Q Consensus        77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~---~a~Ln~P~GIavD~dG~LYVAD~  153 (486)
                      =..|++++||+++++-. ++.|..++.....  ....+.+....... ......   ...-..=..|+++++|++.++=.
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--LVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCC--EEEEECC------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccc--eEeeeccccccccc-ccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            37899999999877754 5678888765321  11122111000000 000000   00011124789999999666655


Q ss_pred             CCCEEEEEcCCC
Q 011435          154 LNLAIRKIGDAG  165 (486)
Q Consensus       154 ~n~rIrkid~~G  165 (486)
                      .++.|+.++...
T Consensus       141 ~dg~v~i~~~~~  152 (388)
T d1erja_         141 EDRLIRIWDIEN  152 (388)
T ss_dssp             TTSCEEEEETTT
T ss_pred             cccccccccccc
Confidence            677888888654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.09  E-value=9.8  Score=33.75  Aligned_cols=70  Identities=13%  Similarity=0.052  Sum_probs=43.6

Q ss_pred             eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435           78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA  157 (486)
Q Consensus        78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r  157 (486)
                      ..|++.++|+++++-..++.|..++.....  ......+.                -..-..+++.+++...++=...+.
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCCCCcceecccccccccccccccc--cccccccc----------------ccccccccccccccccccccccee
Confidence            468899999987777777888888875321  11111110                112357778887774444445677


Q ss_pred             EEEEcCCC
Q 011435          158 IRKIGDAG  165 (486)
Q Consensus       158 Irkid~~G  165 (486)
                      |+.+|...
T Consensus       187 i~~~d~~~  194 (388)
T d1erja_         187 VRIWDLRT  194 (388)
T ss_dssp             EEEEETTT
T ss_pred             eeeeeccc
Confidence            88887665

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.94  E-value=7.6  Score=32.53  Aligned_cols=64  Identities=11%  Similarity=0.130  Sum_probs=40.3

Q ss_pred             cceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435          137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA  213 (486)
Q Consensus       137 P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r  213 (486)
                      -..++++++|+++++=..++.|+.+|...   +.++.+..                ..-+.++ ..+++.++++-..++.
T Consensus       250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----------------~~V~~~~-~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE----------------HFVTSLD-FHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS----------------SCEEEEE-ECSSSSCEEEEETTSE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC----------------CCEEEEE-EcCCCCEEEEEeCCCe
Confidence            46899999998655544578899998654   55554321                1124565 4566666666556667


Q ss_pred             EEEE
Q 011435          214 LRQI  217 (486)
Q Consensus       214 Ir~i  217 (486)
                      |+.+
T Consensus       313 i~iW  316 (317)
T d1vyhc1         313 VKVW  316 (317)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7665