Citrus Sinensis ID: 011440

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----

MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPLSNQQ

cccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEcccccccEEEEEEEccccEEEEEEccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccEEEEccccccccccccccHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccHHHHHHccccEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHccccccccccc

cccccccccccccEcccccHcccHcccccccccccHHHccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEEccccEEEEccccccccccccccccccccccccccccEEEEEEEccccccHHHHcccHHHHHHccccccccccccccHHHHHHHHHccEEEEccccHHHHHHHHHcHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHccccccccHHHHHHccccEEEEEcEEEcccccEEccHHHHHHHHHHHHHHHHHHHcccccHccc

madsllgpsisftFTLTFTRHLLFEkrkirprcssrksltksmsaathcrcfsnpthtqpsllvfsggtafNGVVEELKNITTRVAhvlpvsddggstAEIVRVLggpavgdirsrclrlsdestPEALAVRRLLghrlplhpqqaksewynivegehslwkgvskPYRETIRAFLSYFQNEIlrrpnesfcfsngsignfffAGARVFFQSLDAAIFLFSrvsdipsesqvlpvistndrltlgcelgdgtvirgqneishptngsmepvkkersavpalpsriKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTqqmvfptansavldqLNAVDCIIYAMGSLFTSICPSLVLLGIgeiissrscpkVLLLngledretsgfsaSCFVTAITDALNraygdpqkslknspsqyintilvpedgeipldIQCLASQGIFDVITVhsicdpkvgiifdpKSLIQAIADLLGRHmkttvreplsnqq

madsllgpsisftftLTFTrhllfekrkirprcssrksltksmSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVlpvsddggstAEIVRVlggpavgdIRSRCLRLSDESTPEALAVRRLLGHRlplhpqqaksewynIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVirgqneishptngsmepvkkersavpalpsrIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGdpqkslknspsqYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKttvreplsnqq

MADSLLGPSISftftltftrhllfEKRKIRPRCSSRKSLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVrrllghrlplhpQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPLSNQQ

*******PSISFTFTLTFTRHLLFEKRKI****************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSD***PEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIR****************************RIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYG***********QYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRH*************

****L**PSISFTFTLTFTRHLLF*************************************LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPT***********************VFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHM************

MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRC************ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPT**************PALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTV********

***SLLGPSISFTFTLTFTRHLLFEKRK****************************HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISH************RSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKTTVREPL****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		485	2.2.26 [Sep-21-2011]
P53980		444	Uncharacterized protein Y	yes	no	0.729	0.797	0.334	1e-51
Q9K706		322	UPF0052 protein BH3568 OS	yes	no	0.486	0.732	0.240	5e-12
O06974		317	UPF0052 protein YvcK OS=B	yes	no	0.531	0.813	0.243	2e-10
Q97LP2		451	UPF0052 protein CA_C0512	yes	no	0.486	0.523	0.238	3e-09
P38541		323	UPF0052 protein in amyB 5	N/A	no	0.486	0.730	0.245	5e-07
Q55575		462	UPF0052 protein sll0154 O	N/A	no	0.406	0.426	0.242	4e-06
P58588		322	UPF0052 protein lmo2473 O	yes	no	0.373	0.562	0.259	1e-05
O66974		328	UPF0052 protein aq_778 OS	yes	no	0.465	0.689	0.223	4e-05
Q9RUF1		467	UPF0052 protein DR_1435 O	yes	no	0.247	0.256	0.294	8e-05

>sp\|P53980\|YNB1_YEAST Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1	Back alignment and function desciption

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 212/422 (50%), Gaps = 68/422 (16%)

Query: 61  SLLVFSGGTAFNGVVEELKNITTRVAH----VLPVSDDGGSTAEIVRVLGGPAVGDIRSR 116
           +++V SGGTA N +     NI+    H    +LP+SD+GGST+EI+R++GGPA+GDIRSR
Sbjct: 2   NVVVCSGGTATNSLTPCFSNISILKGHELTYILPISDNGGSTSEILRIVGGPAIGDIRSR 61

Query: 117 CLRL-SDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAF 175
            +RL  DE   E      L GHRLP     AK EW  IVEG H +WK +S   +E  R+F
Sbjct: 62  IVRLLQDEQLVE------LFGHRLPNDKLLAKKEWNEIVEGSHPIWKNISIEVKEMCRSF 115

Query: 176 LSYFQNEILRRPNES--FCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVL 233
           + + Q E+L++   S  F F + SIGNFF  GAR+F  SLDA+I L  R+        V+
Sbjct: 116 IIHMQAELLKKIKHSNPFQFESASIGNFFLTGARLFLGSLDASIELMMRIGRCSPLVHVI 175

Query: 234 PVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSA---------------- 277
           P I+TN    +   L +G +I GQ++ISHP+    +      SA                
Sbjct: 176 PCINTNHTHHISALLTNGEMITGQSQISHPSKSVPKDNSIAHSAKFIHLLGSYDDHLKIL 235

Query: 278 ------------------VPALPSRIKRVFYMSSEGSNL---LHEVIAVVLFYWFSYLTQ 316
                             +P L +  +  F    E  NL   +H ++ +  +        
Sbjct: 236 LDDEEEEAEEEYANPIYILPELKNS-QLHFDKLDESQNLPAPVHRILYINPY-------G 287

Query: 317 QMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLLNGL 375
           + + P  N   + ++   D ++Y++GSL TS+ P L+L  + E+I  S +  KVLL+N  
Sbjct: 288 EEIKPMGNPRAISKVKKADMVVYSIGSLMTSLLPILILGNLAEVILESNNTKKVLLINNK 347

Query: 376 EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQ--------YINTILVPEDGEIP 427
            DRE  G     +V  I D+++RA    ++S K   S+        +I  I+  ++GEI 
Sbjct: 348 YDREVFGLDGLHYVQMIIDSMSRAIAGYRQS-KGVHSENDDFEWQDFITDIVYLKNGEIE 406

Query: 428 LD 429
           +D
Sbjct: 407 ID 408

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp\|Q9K706\|Y3568_BACHD UPF0052 protein BH3568 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH3568 PE=1 SV=1	Back alignment and function description

>sp\|O06974\|YVCK_BACSU UPF0052 protein YvcK OS=Bacillus subtilis (strain 168) GN=yvcK PE=3 SV=1	Back alignment and function description

>sp\|Q97LP2\|Y512_CLOAB UPF0052 protein CA_C0512 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0512 PE=3 SV=1	Back alignment and function description

>sp\|P38541\|YAMB_THETU UPF0052 protein in amyB 5'region OS=Thermoanaerobacter thermosulfurogenes PE=3 SV=1	Back alignment and function description

>sp\|Q55575\|Y154_SYNY3 UPF0052 protein sll0154 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0154 PE=3 SV=1	Back alignment and function description

>sp\|P58588\|Y2473_LISMO UPF0052 protein lmo2473 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo2473 PE=3 SV=1	Back alignment and function description

>sp\|O66974\|Y778_AQUAE UPF0052 protein aq_778 OS=Aquifex aeolicus (strain VF5) GN=aq_778 PE=3 SV=1	Back alignment and function description

>sp\|Q9RUF1\|Y1435_DEIRA UPF0052 protein DR_1435 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1435 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		485
225443825		462	PREDICTED: uncharacterized protein YNL01	0.936	0.982	0.736	0.0
224114696		417	predicted protein [Populus trichocarpa]	0.816	0.949	0.789	0.0
255563114		471	conserved hypothetical protein [Ricinus	0.839	0.864	0.783	0.0
356546589		472	PREDICTED: uncharacterized protein YNL01	0.948	0.974	0.715	0.0
357446981		460	hypothetical protein MTR_2g015860 [Medic	0.853	0.9	0.731	0.0
449509031		477	PREDICTED: uncharacterized protein YNL01	0.917	0.932	0.699	0.0
449462647		454	PREDICTED: uncharacterized protein YNL01	0.917	0.980	0.701	0.0
194706266		435	unknown [Zea mays]	0.832	0.928	0.741	1e-180
326520734		496	predicted protein [Hordeum vulgare subsp	0.890	0.870	0.705	1e-179
414881833		480	TPA: hypothetical protein ZEAMMB73_58781	0.832	0.841	0.741	1e-179

>gi\|225443825\|ref\|XP_002274261.1\| PREDICTED: uncharacterized protein YNL011C [Vitis vinifera] gi\|297740490\|emb\|CBI30672.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/485 (73%), Positives = 394/485 (81%), Gaps = 31/485 (6%)

Query: 1   MADSLLGPSISFTFTLTFTRHLLFEKRKIRPRCSSRKSLTKSMSAATHCRCFSNP----- 55
           MAD  LGP   F+  L F  H      +     S+ +SLT + +   H   FSNP     
Sbjct: 1   MADLGLGPP--FSKALPF--HFPISPSRFH---SAPRSLTMA-ADHPHSYSFSNPNPIPD 52

Query: 56  -THTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIR 114
            + +QPSLLVFSGGTAFNGVVEELK +TT VAHVLPVSDDGGSTAEIVRVLGGPAVGDIR
Sbjct: 53  PSTSQPSLLVFSGGTAFNGVVEELKKLTTCVAHVLPVSDDGGSTAEIVRVLGGPAVGDIR 112

Query: 115 SRCLRLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRA 174
           SRCLRLSD+ST EALAVR+LLGHRLPL  Q AK EWY IVEGEH+LW+GVSKPYRETIR+
Sbjct: 113 SRCLRLSDQSTSEALAVRKLLGHRLPLDAQAAKLEWYQIVEGEHALWEGVSKPYRETIRS 172

Query: 175 FLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLP 234
           FL+YFQN+ILRR  ESFCFSNGSIGNFFFAGAR+FF SLDAAIFLFSRVSDIP+ES +LP
Sbjct: 173 FLAYFQNQILRRSKESFCFSNGSIGNFFFAGARIFFDSLDAAIFLFSRVSDIPTESLILP 232

Query: 235 VISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSE 294
           VISTNDRLTLGCEL DG++IRGQNEISHPT+GSM+P+ KE S+VP LPS IKRVFYMSSE
Sbjct: 233 VISTNDRLTLGCELWDGSIIRGQNEISHPTSGSMQPINKEISSVPPLPSAIKRVFYMSSE 292

Query: 295 GSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVL 354
           G NLLHE                 VFPTAN AVLDQL+ VDCI+YAMGSLFTSICPSLVL
Sbjct: 293 GRNLLHE-----------------VFPTANPAVLDQLSNVDCIVYAMGSLFTSICPSLVL 335

Query: 355 LGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQY 414
           LGIGEIISS SC KVLLLNG  DRETSGFSAS FV+AITDALNR YGDPQ  LKN PSQY
Sbjct: 336 LGIGEIISSSSCLKVLLLNGTHDRETSGFSASRFVSAITDALNRTYGDPQNRLKNPPSQY 395

Query: 415 INTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMK 474
           INT+LVP+DG+IP+D+QCLASQGIF VITV SICDP +GIIFDPKSLI+A+ADL+GR   
Sbjct: 396 INTLLVPKDGQIPVDVQCLASQGIFHVITVDSICDPDMGIIFDPKSLIRALADLIGRQTT 455

Query: 475 TTVRE 479
           T V E
Sbjct: 456 TNVIE 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224114696\|ref\|XP_002316832.1\| predicted protein [Populus trichocarpa] gi\|222859897\|gb\|EEE97444.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255563114\|ref\|XP_002522561.1\| conserved hypothetical protein [Ricinus communis] gi\|223538252\|gb\|EEF39861.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356546589\|ref\|XP_003541707.1\| PREDICTED: uncharacterized protein YNL011C-like [Glycine max]	Back alignment and taxonomy information

>gi\|357446981\|ref\|XP_003593766.1\| hypothetical protein MTR_2g015860 [Medicago truncatula] gi\|355482814\|gb\|AES64017.1\| hypothetical protein MTR_2g015860 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449509031\|ref\|XP_004163474.1\| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449462647\|ref\|XP_004149052.1\| PREDICTED: uncharacterized protein YNL011C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|194706266\|gb\|ACF87217.1\| unknown [Zea mays]	Back alignment and taxonomy information

>gi\|326520734\|dbj\|BAJ92730.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|414881833\|tpg\|DAA58964.1\| TPA: hypothetical protein ZEAMMB73_587810 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		485
TAIR\|locus:2055455		471	MEE18 "AT2G34090" [Arabidopsis	0.542	0.558	0.760	1.2e-149
CGD\|CAL0000122		477	orf19.6905 [Candida albicans (	0.449	0.457	0.393	4.8e-58
UNIPROTKB\|Q59S47		477	CaO19.6905 "Putative uncharact	0.449	0.457	0.393	4.8e-58
SGD\|S000004956		444	YNL011C "Putative protein of u	0.408	0.445	0.417	2e-49
UNIPROTKB\|Q81X60		317	BAS5003 "Uncharacterized prote	0.181	0.277	0.318	2.6e-13
TIGR_CMR\|BA_5383		317	BA_5383 "conserved hypothetica	0.181	0.277	0.318	2.6e-13
UNIPROTKB\|Q71WV4		322	LMOf2365_2446 "Putative unchar	0.197	0.298	0.358	1.9e-11
UNIPROTKB\|Q3AFD9		408	CHY_0273 "Putative uncharacter	0.144	0.171	0.338	1.4e-09
TIGR_CMR\|CHY_0273		408	CHY_0273 "conserved hypothetic	0.144	0.171	0.338	1.4e-09

TAIR\|locus:2055455 MEE18 "AT2G34090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1012 (361.3 bits), Expect = 1.2e-149, Sum P(2) = 1.2e-149
 Identities = 200/263 (76%), Positives = 215/263 (81%)

Query:    44 SAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVR 103
             S +    C S+ T   PSLLVFSGGT FNGVVEELK +TTRVAHVLPVSDDGGSTAEIVR
Sbjct:    36 STSLMAECLSSSTVEPPSLLVFSGGTGFNGVVEELKKLTTRVAHVLPVSDDGGSTAEIVR 95

Query:   104 VLGGPAVGDIRSRCLRLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKG 163
             VLGGPAVGDIRSRCLRLSDEST EALAV             QAK +WY+IVEG HSLW G
Sbjct:    96 VLGGPAVGDIRSRCLRLSDESTSEALAVRRLLGHRLPIDAHQAKKDWYDIVEGNHSLWDG 155

Query:   164 VSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRV 223
             VS+PY ETIRAFL YFQNEI RRPNE FCFSNGSIGNFFFAGAR+FFQSLDAAIFLFSRV
Sbjct:   156 VSRPYSETIRAFLIYFQNEIHRRPNERFCFSNGSIGNFFFAGARIFFQSLDAAIFLFSRV 215

Query:   224 SDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPS 283
             S+IP +S VLPVISTNDRLTLGCEL DGT+IRGQNEISHPT G+ + V K   +  ALPS
Sbjct:   216 SEIPCDSLVLPVISTNDRLTLGCELQDGTIIRGQNEISHPTTGTTQTVDKRHCSTSALPS 275

Query:   284 RIKRVFYMSSEGSNLLHEVIAVV 306
             +IKRVFYMSSEG+NLLHEV   V
Sbjct:   276 KIKRVFYMSSEGNNLLHEVFPPV 298

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

CGD\|CAL0000122 orf19.6905 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59S47 CaO19.6905 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

SGD\|S000004956 YNL011C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81X60 BAS5003 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_5383 BA_5383 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71WV4 LMOf2365_2446 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3AFD9 CHY_0273 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0273 CHY_0273 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110745	hypothetical protein (417 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		485
cd07187		308	cd07187, YvcK_like, family of mostly uncharacteriz	1e-87
pfam01933		291	pfam01933, UPF0052, Uncharacterized protein family	7e-60
TIGR04357		368	TIGR04357, CofD_rel_GAK, CofD-related protein, GAK	5e-56
TIGR01826		310	TIGR01826, CofD_related, conserved hypothetical pr	2e-21
cd07044		309	cd07044, CofD_YvcK, Family of CofD-like proteins a	5e-14
COG0391		323	COG0391, COG0391, Uncharacterized conserved protei	6e-13

>gnl\|CDD\|132873 cd07187, YvcK_like, family of mostly uncharacterized proteins similar to B	Back alignment and domain information

 Score =  270 bits (693), Expect = 1e-87
 Identities = 103/419 (24%), Positives = 154/419 (36%), Gaps = 124/419 (29%)

Query: 62  LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS 121
           ++ F GGT  + ++  LK  T  +  ++ V+DDGGS+  + R LG PA GDIR+R + L+
Sbjct: 1   IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALA 60

Query: 122 DESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQN 181
           D+ +                                                        
Sbjct: 61  DDESLAQKLF-------------------------------------------------- 70

Query: 182 EILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDR 241
             L R    F     S+GN   A   +   S   AI L SR+  +    +VLPV  TND 
Sbjct: 71  -FLYRRFGDFDLRGHSLGNLILAALTLITGSFAEAILLLSRLLGVRG--RVLPV--TNDP 125

Query: 242 LTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
           L L  EL DGT++RG++ ISH                  L S IKRVF    +       
Sbjct: 126 LHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPPD------- 162

Query: 302 VIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEII 361
                              P AN   L+ +   D I+Y  GSL+TSI P+L++ GI E I
Sbjct: 163 -------------------PKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAI 203

Query: 362 SSRSCPKVLLLNGLEDR-ETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILV 420
            +   PKV + N +    ET GF+ S  V A+   L                  ++ +LV
Sbjct: 204 RASKAPKVYICNLMTQPGETDGFTLSDHVRALLRHLG--------------EGLLDVVLV 249

Query: 421 PEDGEIPLDIQCLASQGIFDVITVHSICDPKV------------GIIFDPKSLIQAIAD 467
             +      ++      +   +    +    +            GI  DP+ L  A+ +
Sbjct: 250 NSERPPEEVLRRYEEGSLPVELDEELLEKLGIRVIEADLLSEESGIRHDPEKLAAALLE 308

subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site. Length = 308

>gnl\|CDD\|216795 pfam01933, UPF0052, Uncharacterized protein family UPF0052	Back alignment and domain information

>gnl\|CDD\|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system	Back alignment and domain information

>gnl\|CDD\|211689 TIGR01826, CofD_related, conserved hypothetical protein, cofD-related	Back alignment and domain information

>gnl\|CDD\|132871 cd07044, CofD_YvcK, Family of CofD-like proteins and proteins related to YvcK	Back alignment and domain information

>gnl\|CDD\|223468 COG0391, COG0391, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		485
TIGR01826		310	CofD_related conserved hypothetical protein, cofD-	100.0
cd07044		309	CofD_YvcK Family of CofD-like proteins and protein	100.0
cd07187		308	YvcK_like family of mostly uncharacterized protein	100.0
PF01933		300	UPF0052: Uncharacterised protein family UPF0052; I	100.0
COG0391		323	Uncharacterized conserved protein [Function unknow	100.0
cd07186		303	CofD_like LPPG:FO 2-phospho-L-lactate transferase;	100.0
TIGR01819		297	F420_cofD LPPG:FO 2-phospho-L-lactate transferase.	100.0
PRK13606		303	LPPG:FO 2-phospho-L-lactate transferase; Provision	100.0

>TIGR01826 CofD_related conserved hypothetical protein, cofD-related	Back alignment and domain information

Probab=100.00  E-value=2e-81  Score=634.20  Aligned_cols=307  Identities=28%  Similarity=0.422  Sum_probs=280.8

Q ss_pred             EEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 011440           62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL  141 (485)
Q Consensus        62 IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf~~Rf~~  141 (485)
                      ||+||||||++++++|||+++.++|+||||+|||||||+||+++|+++|||+||||.+||+.+.    .|.+||+|||+.
T Consensus         1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGGSSg~lr~~~g~~~~GDiRn~L~aLa~~~~----~~~~lf~yRf~~   76 (310)
T TIGR01826         1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADDGGSSGRLREELDVPPPGDLRNCLAALSDDPS----LLSKLFQYRFGG   76 (310)
T ss_pred             CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcCCcchHHHHHhcCCCCCcHHHHHHHHhCcCCh----HHHHHHhccCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999873    799999999963


Q ss_pred             ChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 011440          142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS  221 (485)
Q Consensus       142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai~~~s  221 (485)
                                                                      ++||++||+|||+|+|+..++|+|.+||+.+|
T Consensus        77 ------------------------------------------------~~dl~gh~~GNl~Laal~~~~g~~~~Ai~~~~  108 (310)
T TIGR01826        77 ------------------------------------------------GGELSGHSLGNLMLAALSEISGSFLEAINLLS  108 (310)
T ss_pred             ------------------------------------------------CCcccCCcHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                                                            25899999999999999999999999999999


Q ss_pred             hhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCCcchhH
Q 011440          222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE  301 (485)
Q Consensus       222 ~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~~~~~~  301 (485)
                      ++++|+  ++|+||  |+++++|+|+++||+++.||++|+.                  ...+|++|||.+.        
T Consensus       109 ~~l~v~--g~VlP~--t~~~v~L~a~~~dG~~v~Ge~~i~~------------------~~~~I~~v~l~~~--------  158 (310)
T TIGR01826       109 KILKVK--GRVLPM--SEHPVTLVAEFEDGREVRGESNIPK------------------MGGKIDRVRLEPE--------  158 (310)
T ss_pred             HHhCCC--CEEECC--CCCceEEEEEECCCCEEEEEEhhhc------------------CCCCceEEEEeCC--------
Confidence            999998  899999  8999999999999999999999974                  2567999999873        


Q ss_pred             HHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-CCCCcC
Q 011440          302 VIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRET  380 (485)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t~dgET  380 (485)
                                        .|+++|++++||++||+||||||||||||+|||+++||++||++++||||||||+ +|+|||
T Consensus       159 ------------------~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt  220 (310)
T TIGR01826       159 ------------------DVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGET  220 (310)
T ss_pred             ------------------CCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCC
Confidence                              5789999999999999999999999999999999999999999999999999999 899999


Q ss_pred             CCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCCccCHH
Q 011440          381 SGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPK  459 (485)
Q Consensus       381 ~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~rhD~~  459 (485)
                      +||+++|||++|.+|+|....|.++ +....|.++++.|......+|..|.+.++++|++ |+..+.+...+...||||+
T Consensus       221 ~g~~~~dhv~~i~~~~g~~~~D~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~~~~~g~~-vi~~~l~~~~~~~~rHD~~  299 (310)
T TIGR01826       221 DGFSLEDHVDALHRHLGKPFIDTVLVNTEKVPLEVLRNYFEEGSEQVEHDAEGLQKLGIE-VIFEDLLRAENGTIRHDPQ  299 (310)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCEEEECCCCCChHHHHHHHhccCCcccccHHHHHhCCCE-EEeccccccCCCCcccCHH
Confidence            9999999999999999987667654 5566788889888655556788899999999999 5577755444446899999


Q ss_pred             HHHHHHHHHH
Q 011440          460 SLIQAIADLL  469 (485)
Q Consensus       460 ~La~aL~~l~  469 (485)
                      +||++|++++
T Consensus       300 ~La~~l~~l~  309 (310)
T TIGR01826       300 KLADALERIL  309 (310)
T ss_pred             HHHHHHHHHh
Confidence            9999999876

This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.

>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK	Back alignment and domain information

>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B	Back alignment and domain information

>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052	Back alignment and domain information

>COG0391 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis	Back alignment and domain information

>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase	Back alignment and domain information

>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		485
2o2z_A		323	Crystal Structure Of A Protein Member Of The Upf005		2e-12
2hzb_A		333	X-Ray Crystal Structure Of Protein Bh3568 From Baci		2e-12
2p0y_A		341	Crystal Structure Of Q88yi3_lacpl From Lactobacillu		3e-08
2ppv_A		332	Crystal Structure Of A Protein Belonging To The Upf		4e-06

>pdb|2O2Z|A Chain A, Crystal Structure Of A Protein Member Of The Upf0052 Family (Bh3568) From Bacillus Halodurans At 2.60 A Resolution Length = 323

Back alignment and structure

Iteration: 1

Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/337 (23%), Positives = 130/337 (38%), Gaps = 101/337 (29%) Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118 + +++VF GGT + ++ LK + ++ V+DDGGS+ + + L P GD+R+ + Sbjct: 4 KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63 Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178 LS+ +P E + F Sbjct: 64 ALSE------------------------------------------VEPLLEQL--FQHR 79 Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238 F+N S S+GN AG I S+V ++ +VLP ++ Sbjct: 80 FEN--------GNGLSGHSLGNLLLAGXTSITGDFARGISEXSKVLNV--RGKVLP--AS 127 Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298 N + L E DGT++ G+ S++P +IKRVF Sbjct: 128 NRSIILHGEXEDGTIVTGE------------------SSIPKAGKKIKRVF--------- 160 Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358 LT + P L+ + D I+ GSL+TS+ P+L++ GI Sbjct: 161 ---------------LTPKDTKPLREG--LEAIRKADVIVIGPGSLYTSVLPNLLVPGIC 203 Query: 359 EIISSRSCPKVLLLN-GLEDRETSGFSASCFVTAITD 394 E I + KV + N ++ ET G++AS + AI D Sbjct: 204 EAIKQSTARKVYICNVXTQNGETDGYTASDHLQAIXD 240

PyMOL of 2o2z

>pdb|2HZB|A Chain A, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus Halodurans. Northeast Structural Genomics Consortium Bhr60. Length = 333

Back alignment and structure

>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target Lpr6 Length = 341

Back alignment and structure

>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052 (Se_0549) From Staphylococcus Epidermidis Atcc 12228 At 2.00 A Resolution Length = 332

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		485
2o2z_A		323	Hypothetical protein; structural genomics, joint c	3e-51
2q7x_A		326	UPF0052 protein SP_1565; structural genomics, join	4e-49
2p0y_A		341	Hypothetical protein LP_0780; structural genomics,	6e-48
2ppv_A		332	Uncharacterized protein; putative phosphotransfera	2e-46
3c3d_A		311	2-phospho-L-lactate transferase; alpha-beta protei	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A Length = 323	Back alignment and structure

 Score =  175 bits (446), Expect = 3e-51
 Identities = 85/419 (20%), Positives = 150/419 (35%), Gaps = 103/419 (24%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 4   KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 64  ALSEVEP----LLEQLFQHRF--------------------------------------- 80

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 81  ---------ENGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRG--KVLPA--S 127

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G+                  S++P    +IKRVF    +    
Sbjct: 128 NRSIILHGEMEDGTIVTGE------------------SSIPKAGKKIKRVFLTPKD---- 165

Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358
                                        L+ +   D I+   GSL+TS+ P+L++ GI 
Sbjct: 166 ----------------------TKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGIC 203

Query: 359 EIISSRSCPKVLLLN-GLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINT 417
           E I   +  KV + N   ++ ET G++AS  + AI D       D         S  +  
Sbjct: 204 EAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKA 263

Query: 418 ILVPEDGE-IPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIADLLGRHMKT 475
               E  E + +D   L + G+   I+ + + +    +  +   + +AI +   R   +
Sbjct: 264 KYAKEKAEPVIVDEHKLKALGV-GTISDYFVLEQDDVLRHNASKVSEAILEGKPRTSSS 321

PyMOL of 2o2z

>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae} Length = 326	Back alignment and structure

>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Length = 341	Back alignment and structure

>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis} Length = 332	Back alignment and structure

>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A Length = 311	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		485
2o2z_A		323	Hypothetical protein; structural genomics, joint c	100.0
2ppv_A		332	Uncharacterized protein; putative phosphotransfera	100.0
2q7x_A		326	UPF0052 protein SP_1565; structural genomics, join	100.0
2p0y_A		341	Hypothetical protein LP_0780; structural genomics,	100.0
3c3d_A		311	2-phospho-L-lactate transferase; alpha-beta protei	100.0

>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A	Back alignment and structure

Probab=100.00  E-value=3.7e-82  Score=641.99  Aligned_cols=317  Identities=26%  Similarity=0.377  Sum_probs=281.5

Q ss_pred             CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhc
Q 011440           57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLG  136 (485)
Q Consensus        57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf~  136 (485)
                      .++||||+||||||++++++|||+++.++|+||||+|||||||+||++||+++||||||||++||+.++    .+.+||+
T Consensus         2 ~~~~kiv~lgGGtGl~~ll~gL~~~~~~iT~IVtv~DdGgssG~LR~~~~~~~pGDir~~l~aLa~~~~----~~~~L~~   77 (323)
T 2o2z_A            2 MKKKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQ   77 (323)
T ss_dssp             CCCEEEEEEECSHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHHTSCCCHHHHHHHHHHCCCCH----HHHHHHH
T ss_pred             CCCCeEEEECCcccHHHHHHHHHhcCCCeEEEEECCcCCccchhhHhhcCCCCCchHHHHHHHhCCCcH----HHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999864    6899999


Q ss_pred             CcCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHH
Q 011440          137 HRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAA  216 (485)
Q Consensus       137 ~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~A  216 (485)
                      |||+.                                                ++||++||+|||||+|++.+.|+|.+|
T Consensus        78 ~Rf~~------------------------------------------------~~dlagh~~GNl~L~al~~~~g~~~~a  109 (323)
T 2o2z_A           78 HRFEN------------------------------------------------GNGLSGHSLGNLLLAGMTSITGDFARG  109 (323)
T ss_dssp             CBCCC------------------------------------------------C-CCTTCBHHHHHHHHHHHHHTCHHHH
T ss_pred             hCCCC------------------------------------------------CCccccCcHHHHHHHHHHHccCCHHHH
Confidence            99974                                                368999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCC
Q 011440          217 IFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGS  296 (485)
Q Consensus       217 i~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~  296 (485)
                      |+.+|++++|+  ++|+||  |+++++|+|+++||++++||++|+++                  ..+|++|||.+.   
T Consensus       110 i~~~~~~l~v~--g~VlP~--s~~~v~l~a~~~dG~~v~ge~~I~~~------------------~~~i~~v~~~p~---  164 (323)
T 2o2z_A          110 ISEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK---  164 (323)
T ss_dssp             HHHHHHHTTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTGGGG------------------CSCEEEEEEEST---
T ss_pred             HHHHHHHhCCC--CEEEcC--CCCceEEEEEECCCCEEEEeEcccCC------------------CCCceEEEEeCC---
Confidence            99999999998  899999  89999999999999999999999873                  579999999863   


Q ss_pred             cchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-C
Q 011440          297 NLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-L  375 (485)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t  375 (485)
                                             +|+++|+|++||++||+||||||||||||+|||+++||++||++++||||||||+ +
T Consensus       165 -----------------------~~~~~p~~l~AI~~AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl~t  221 (323)
T 2o2z_A          165 -----------------------DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMT  221 (323)
T ss_dssp             -----------------------TCCCCHHHHHHHHHCSEEEECSSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBC
T ss_pred             -----------------------CCCCCHHHHHHHHhCCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCCC
Confidence                                   5889999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCCcCCCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCC
Q 011440          376 EDRETSGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGI  454 (485)
Q Consensus       376 ~dgET~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~  454 (485)
                      |+|||+||+++||++++.+|++....|.++ +....+.++++.|.-+...++.+|.+.++++|+++ +..+.++..+...
T Consensus       222 q~GET~g~s~~dhv~ai~~~~~~~~iD~vlv~~~~~~~~~~~~Y~~~~~~pv~~d~~~l~~~G~~v-i~~~l~~~~~~~~  300 (323)
T 2o2z_A          222 QNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGT-ISDYFVLEQDDVL  300 (323)
T ss_dssp             CTTTSTTCCHHHHHHHHHHHHCSSSCSEEEEECSCCCHHHHHHHHTTTCCBCCCCHHHHHHTTCEE-EEECCEEEC--CE
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCcEEEECCCcCCHHHHHHHHhcCCCccccCHHHHHhCCCEE-EEecccccCCCCC
Confidence            999999999999999999999987777654 44456778888764333346788999999999994 5788777654668


Q ss_pred             ccCHHHHHHHHHHHHhhccc
Q 011440          455 IFDPKSLIQAIADLLGRHMK  474 (485)
Q Consensus       455 rhD~~~La~aL~~l~~~~~~  474 (485)
                      +||+++|+++|++++.+...
T Consensus       301 rhD~~~La~al~~l~~~~~~  320 (323)
T 2o2z_A          301 RHNASKVSEAILEGKPRTSS  320 (323)
T ss_dssp             EECHHHHHHHHHC-------
T ss_pred             ccCHHHHHHHHHHHHhhccc
Confidence            99999999999999987543

PyMOL of 2o2z

>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}	Back alignment and structure

>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}	Back alignment and structure

>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}	Back alignment and structure

>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		485
d2hzba1		311	c.143.1.1 (A:2-312) Hypothetical protein BH3568 {B	5e-49
d2ffea1		309	c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate tr	1e-27

>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]} Length = 311	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

 Score =  168 bits (427), Expect = 5e-49
 Identities = 83/411 (20%), Positives = 146/411 (35%), Gaps = 103/411 (25%)

Query: 59  QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
           + +++VF GGT  + ++  LK     +  ++ V+DDGGS+  + + L  P  GD+R+  +
Sbjct: 2   KKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 61

Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
            LS+        + +L  HR                                        
Sbjct: 62  ALSEVEP----LLEQLFQHRFE-------------------------------------- 79

Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
                          S  S+GN   AG           I   S+V ++    +VLP   +
Sbjct: 80  ----------NGNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNVRG--KVLPA--S 125

Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
           N  + L  E+ DGT++ G++ I                       +IKRVF    +    
Sbjct: 126 NRSIILHGEMEDGTIVTGESSIPK------------------AGKKIKRVFLTPKD---- 163

Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358
                                        L+ +   D I+   GSL+TS+ P+L++ GI 
Sbjct: 164 ----------------------TKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGIC 201

Query: 359 EIISSRSCPKVLLLN-GLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINT 417
           E I   +  KV + N   ++ ET G++AS  + AI D       D         S  +  
Sbjct: 202 EAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKA 261

Query: 418 ILVPEDGE-IPLDIQCLASQGIFDVITVHSICDPKVGIIFDPKSLIQAIAD 467
               E  E + +D   L + G+   I+ + + +    +  +   + +AI +
Sbjct: 262 KYAKEKAEPVIVDEHKLKALGV-GTISDYFVLEQDDVLRHNASKVSEAILE 311

PyMOL of d2hzba1

>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]} Length = 309	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		485
d2hzba1		311	Hypothetical protein BH3568 {Bacillus halodurans [	100.0
d2ffea1		309	LPPG:FO 2-phospho-L-lactate transferase CofD {Meth	100.0
d2iida1		370	L-aminoacid oxidase {Malayan pit viper (Calloselas	85.46

>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CofD-like
superfamily: CofD-like
family: CofD-like
domain: Hypothetical protein BH3568
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=1.9e-74  Score=582.26  Aligned_cols=309  Identities=26%  Similarity=0.392  Sum_probs=279.7

Q ss_pred             CCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcC
Q 011440           58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGH  137 (485)
Q Consensus        58 ~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf~~  137 (485)
                      ++++||+||||||++++++||++++.++|+||||+|||||||+||++|+++|+||+|+||++|++.++    .|.++|+|
T Consensus         1 ~~~~Iv~l~GGtG~~~ll~gl~~~~~~lt~IVn~~DDggssG~Lr~~~~i~p~gD~r~~l~al~~~~~----~~~~l~~~   76 (311)
T d2hzba1           1 KKKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLVALSEVEP----LLEQLFQH   76 (311)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHTCSCCCHHHHHHHHHHCCSCH----HHHHHHHC
T ss_pred             CCCcEEEECCcccHHHHHHHHHhCCCCeEEEEECccCCccchhhhhhcCCCCchHHHHHHHhcCCCcH----HHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999998764    57889999


Q ss_pred             cCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHH
Q 011440          138 RLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAI  217 (485)
Q Consensus       138 Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai  217 (485)
                      ||+.                                                .|++.+|++||++++++...+++|.+||
T Consensus        77 rf~~------------------------------------------------~~~~~~~~lGn~~la~~~~~~~~l~~ai  108 (311)
T d2hzba1          77 RFEN------------------------------------------------GNGLSGHSLGNLLLAGMTSITGDFARGI  108 (311)
T ss_dssp             BCCC------------------------------------------------CSSSTTCBHHHHHHHHHHHHHSCHHHHH
T ss_pred             hccc------------------------------------------------cCCcccchHHHHHHHHHHHhcCCHHHHH
Confidence            9974                                                2679999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCCc
Q 011440          218 FLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSN  297 (485)
Q Consensus       218 ~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~~  297 (485)
                      +.+|+++||+  ++|+||  |+++++|+|+++||++++||++|.+.                  ..++.++++.+.    
T Consensus       109 ~~~~~~lgi~--~~VlP~--t~~~v~l~~~~~dG~~~~ge~~i~~~------------------~~~~~~~~~~~~----  162 (311)
T d2hzba1         109 SEMSKVLNVR--GKVLPA--SNRSIILHGEMEDGTIVTGESSIPKA------------------GKKIKRVFLTPK----  162 (311)
T ss_dssp             HHHHHHHTCS--SEEEES--CSSCCEEEEEETTSCEEESTTTSGGG------------------CSCEEEEEEEST----
T ss_pred             HHHHHHhCCC--CEEEec--CCCceEEEEEECCCCcccCcchhhhc------------------CCcceEeecccC----
Confidence            9999999998  899999  89999999999999999999999863                  457788887764    


Q ss_pred             chhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-CC
Q 011440          298 LLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LE  376 (485)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t~  376 (485)
                                            .|+++|++++||++||+||||||||||||+|||+++||++||++++|+||||+|+ +|
T Consensus       163 ----------------------~~~~~~~~~~aI~~AD~IiigPgs~~tSI~P~L~v~gi~~AI~~s~a~~v~V~ni~~~  220 (311)
T d2hzba1         163 ----------------------DTKPLREGLEAIRKADVIVIGPGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQ  220 (311)
T ss_dssp             ----------------------TCCCCHHHHHHHHHCSEEEECSSCCCCCCHHHHTSTTHHHHHHHCCSEEEEECCSBCC
T ss_pred             ----------------------CCcCChhHHHHHHhCCcEEEcCCcHHHHhhhheecHHHHHHHhcCCCCEEEEecCCCC
Confidence                                  5789999999999999999999999999999999999999999999999999998 89


Q ss_pred             CCcCCCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCCc
Q 011440          377 DRETSGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGII  455 (485)
Q Consensus       377 dgET~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~r  455 (485)
                      +|||+||+++||++++.+|++....|.++ +....+...+..|......+|.+|.+.++++|+++ +..+.++..+...|
T Consensus       221 ~gET~g~~~~d~v~~i~~~l~~~~~D~vlvn~~~~~~~~~~~y~~~~~~~V~~d~~~~~~~g~~v-i~~~~~~~~~~~~r  299 (311)
T d2hzba1         221 NGETDGYTASDHLQAIMDHCGVGIVDDILVHGEPISDTVKAKYAKEKAEPVIVDEHKLKALGVGT-ISDYFVLEQDDVLR  299 (311)
T ss_dssp             TTTSTTCCHHHHHHHHHHHHCSSSCSEEEEECSCCCHHHHHHHHTTTCCBCCCCHHHHHHTTCEE-EEECCCEESSSSEE
T ss_pred             cccccCcCHHHHHHHHHHHhCcCCCCEEEECCCCCCHHHHHHHHHccCCcccCCHHHHHhCCCEE-EeeceEecCCCCcc
Confidence            99999999999999999999987666554 44456666777775444557889999999999995 58888888777789


Q ss_pred             cCHHHHHHHHHH
Q 011440          456 FDPKSLIQAIAD  467 (485)
Q Consensus       456 hD~~~La~aL~~  467 (485)
                      ||+++||++|++
T Consensus       300 HD~~kLa~~lle  311 (311)
T d2hzba1         300 HNASKVSEAILE  311 (311)
T ss_dssp             CCHHHHHHHHTC
T ss_pred             cCHHHHHHHHhC
Confidence            999999999863

PyMOL of d2hzba1

>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}	Back information, alignment and structure